BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62] (141 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62] gi|254040068|gb|ACT56864.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62] Length = 141 Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 141/141 (100%), Positives = 141/141 (100%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG Sbjct: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS Sbjct: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 Query: 121 LEWGRAHWRSLKNSGYAPDVI 141 LEWGRAHWRSLKNSGYAPDVI Sbjct: 121 LEWGRAHWRSLKNSGYAPDVI 141 >gi|315122197|ref|YP_004062686.1| DNA polymerase III subunit chi [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495599|gb|ADR52198.1| DNA polymerase III subunit chi [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 141 Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 86/136 (63%), Positives = 117/136 (86%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M LF RFK++W+ + L+LL+ EY+ G R+S+QCGSER+RD+LNE LWTWKKD F+PHG Sbjct: 1 MTDFLFCRFKHNWQNDFLILLESEYQNGLRISIQCGSERIRDALNERLWTWKKDSFMPHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 +DVG+E +SFQP+LLT+SS NAN S +RF VD+ASMHIGD+D+Y+K++FII+TDDQ S Sbjct: 61 IDVGEEEALASFQPILLTVSSNNANASMVRFFVDQASMHIGDMDHYKKIIFIIDTDDQAS 120 Query: 121 LEWGRAHWRSLKNSGY 136 L+WGRA+W++LK++GY Sbjct: 121 LKWGRANWKNLKSNGY 136 >gi|209548674|ref|YP_002280591.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534430|gb|ACI54365.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 149 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDVLFYHLTETKLEDALPPLIDKSVERGWRVAVQTREAARRDALDAHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DEGDF+ QPVLLT++S NAN +T+RF++D A +D YE+VVF+ + DQ Sbjct: 61 GT---DEGDFAENQPVLLTVTSGNANAATVRFIIDGAE--PPPLDAYERVVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKKLKGEGH 132 >gi|327188013|gb|EGE55243.1| DNA polymerase III subunit chi [Rhizobium etli CNPAF512] Length = 149 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT+++D FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKRLKGEGH 132 >gi|218509824|ref|ZP_03507702.1| DNA polymerase III subunit chi [Rhizobium etli Brasil 5] Length = 149 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT+++D FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W LK G+ Sbjct: 116 QLEAARAQWNRLKGEGH 132 >gi|190891139|ref|YP_001977681.1| DNA polymerase III protein, chi subunit [Rhizobium etli CIAT 652] gi|190696418|gb|ACE90503.1| probable DNA polymerase III protein, chi subunit [Rhizobium etli CIAT 652] Length = 149 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEP--PPADPYERIVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKRLKGEGH 132 >gi|241203952|ref|YP_002975048.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857842|gb|ACS55509.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 149 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 83/137 (60%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+++LWT++++ FLPH Sbjct: 1 MTDVLFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPADA--YERIVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKKLKGEGH 132 >gi|116251338|ref|YP_767176.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. viciae 3841] gi|115255986|emb|CAK07067.1| putative DNA polymerase III subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 149 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L L+ E+G RV+VQ RD+L+++LWT++++ FLPH Sbjct: 1 MTDVLFYHLTESRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPADA--YERIVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ RA W+ LK G+ Sbjct: 116 QLDTARAQWKKLKGEGH 132 >gi|86357095|ref|YP_468987.1| DNA polymerase III subunit chi [Rhizobium etli CFN 42] gi|86281197|gb|ABC90260.1| putative DNA polymerase III, chi subunit protein [Rhizobium etli CFN 42] Length = 149 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL E+G RV VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLLDKSIERGWRVVVQTSEAARRDALDAHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D DF+ QPVLLT++S NAN +T+RF+VD A D YE+VVF+ + DQ Sbjct: 61 GTDT---ADFAENQPVLLTVTSDNANAATVRFIVDGAEPPPADA--YERVVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ L+ G+ Sbjct: 116 QLEAARAQWKKLRGEGH 132 >gi|218459999|ref|ZP_03500090.1| DNA polymerase III subunit chi [Rhizobium etli Kim 5] Length = 149 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETKLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTFREETFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAENQPVLLTVTPDNANAATVRFIVDGAEP--PPADSYERIVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKRLKGEGH 132 >gi|222085456|ref|YP_002543986.1| DNA polymerase III [Agrobacterium radiobacter K84] gi|221722904|gb|ACM26060.1| DNA polymerase III [Agrobacterium radiobacter K84] Length = 149 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 83/137 (60%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L L+ E+G +V++Q + RD+L+ +LWT+++D FLPH Sbjct: 1 MTDVLFYHLTESKLEDALPPLIDKSVERGWQVAIQTREQARRDALDTHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE + + QPVLLT+S N N +++RF +D A D+D Y++VVFI + DQ Sbjct: 61 GT---DESEMADRQPVLLTVSPDNLNNASVRFFIDGAEA--SDIDTYQRVVFIFDGYDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ LK G+ Sbjct: 116 QLEGARAQWKKLKGEGH 132 >gi|110634106|ref|YP_674314.1| DNA polymerase III subunit chi [Mesorhizobium sp. BNC1] gi|110285090|gb|ABG63149.1| DNA polymerase III, chi subunit [Chelativorans sp. BNC1] Length = 172 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M L ++ ++ E L L++ E+G RV +Q SE RD+L+ LWT++ D F+PH Sbjct: 16 MEVLFYHLTESTLEEALPPLVEKSLERGWRVGIQTASEERRDALDACLWTFRDDSFVPHA 75 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 D ++ QPV+LT + N N ++IRFLV+ A G +D Y++ VF+ + D Sbjct: 76 T---DREPHAAEQPVILTTAPANPNGASIRFLVEGAE--PGSLDGYQRAVFLFDGHDTSQ 130 Query: 121 LEWGRAHWRSLKNSGY 136 L+ RAHW+++K +G+ Sbjct: 131 LDAARAHWKAMKAAGH 146 >gi|209885472|ref|YP_002289329.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5] gi|209873668|gb|ACI93464.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5] Length = 154 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L L++ E+G RV VQ GSE ++L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQDMRLEAVLPPLIEKSLERGWRVVVQAGSEERAEALDSHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G E D ++ QPV+LT+ N N +T+RFLVD A++ D Y+++V I + DD G Sbjct: 61 G--TWRESD-AAEQPVVLTVRDDNPNDATVRFLVDGATVP-EDCTAYQRIVLIFDGDDDG 116 Query: 120 SLEWGRAHWRSLKNSGY 136 +L+ RA W K GY Sbjct: 117 ALQAARAAWTDCKARGY 133 >gi|13476528|ref|NP_108098.1| DNA polymerase III subunit chi [Mesorhizobium loti MAFF303099] gi|14027289|dbj|BAB54243.1| mlr7869 [Mesorhizobium loti MAFF303099] Length = 149 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ ++G R VQ G+E RD+L+++LWT++ D FL H Sbjct: 1 MADVLFYHLTESTLEEALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D + QP+LLT S N N + IRFLVD A D+ YE+ VF+ + D Sbjct: 61 AT---DREAYPDEQPILLTTSDGNPNEAKIRFLVDGAV--PSDLAGYERAVFLFDGHDAA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 +E R HW+++K++G+A Sbjct: 116 QVEAARGHWKTMKDAGHA 133 >gi|299133715|ref|ZP_07026909.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2] gi|298591551|gb|EFI51752.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2] Length = 155 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ N+L LL+ E+G RV VQ GSE D L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQDMKLENVLPPLLEKSLERGWRVVVQVGSEERADMLDSHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G E D +S +PV+LT+S N N +++ FLVD A + I D Y++VV I N DD Sbjct: 61 G--TWREADAAS-EPVVLTVSDANPNGASVCFLVDGAPVPI-DCSAYQRVVLIFNGDDDE 116 Query: 120 SLEWGRAHWRSLKNSGY 136 +L RA W K G+ Sbjct: 117 ALGAARAAWTDCKARGF 133 >gi|163759138|ref|ZP_02166224.1| putative DNA polymerase III, chi subunit protein [Hoeflea phototrophica DFL-43] gi|162283542|gb|EDQ33827.1| putative DNA polymerase III, chi subunit protein [Hoeflea phototrophica DFL-43] Length = 149 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G RVSV GSE +L+ +LWT++++ FLPH Sbjct: 1 MAEILFYHLTESRLEDALPPLLEKSLERGWRVSVHLGSEERLAALDAHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ D QPVLLT+S AN +T+RF+ D A + + E++V + + DQ Sbjct: 61 GSDMAAHAD---RQPVLLTLSQEAANAATVRFVADGAD--LPALAGVERLVLMFDGHDQD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE RA W+ LK+ G+ Sbjct: 116 QLEAARAQWKRLKSDGH 132 >gi|325292489|ref|YP_004278353.1| DNA polymerase III chi subunit [Agrobacterium sp. H13-3] gi|325060342|gb|ADY64033.1| putative DNA polymerase III chi subunit [Agrobacterium sp. H13-3] Length = 149 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G +V++Q E RD L+ +LWT++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDEERRDFLDTHLWTFRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D QP+LLT S+ N N +++RFLVD A V+ YE++VF+ + D Sbjct: 61 ATDTSAA---PQNQPILLTASNANGNEASVRFLVDGAEPPA--VEGYERIVFMFDGYDAY 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R HW+ LK G+A Sbjct: 116 QLEMARNHWKRLKTEGHA 133 >gi|227821478|ref|YP_002825448.1| DNA polymerase III subunit chi [Sinorhizobium fredii NGR234] gi|227340477|gb|ACP24695.1| DNA polymerase III, chi subunit protein [Sinorhizobium fredii NGR234] Length = 149 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTADAERRDALDTHLWIYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D G+F++ QP+L+ N N +T+RFLVD A + YE+VVF+ + DQ Sbjct: 61 GTDA---GEFAAEQPILIVAGDGNQNGATVRFLVDGAEPP--PLSDYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE R W+ LK G+ Sbjct: 116 QLESARGQWKRLKGEGH 132 >gi|15964909|ref|NP_385262.1| DNA polymerase III subunit chi [Sinorhizobium meliloti 1021] gi|307300979|ref|ZP_07580748.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C] gi|15074088|emb|CAC45735.1| Putative DNA polymerase III chi subunit [Sinorhizobium meliloti 1021] gi|306903934|gb|EFN34520.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C] Length = 149 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D G+F++ QP+L+ N N +T+RF+VD A V YE+VVF+ + DQ Sbjct: 61 GTDA---GEFAAVQPILVVADDGNRNAATVRFVVDGAEP--PPVSEYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE R W+ LK G+ Sbjct: 116 QLEAARDQWKRLKGEGH 132 >gi|150395991|ref|YP_001326458.1| DNA polymerase III subunit chi [Sinorhizobium medicae WSM419] gi|150027506|gb|ABR59623.1| DNA polymerase III chi subunit HolC [Sinorhizobium medicae WSM419] Length = 149 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEVLFYHLTESKLEDALPPLLDKSIERGWRVVVQTVDAERRDALDTHLWVYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D GDF++ QP+L+ N N +T+RFLVD A V YE+VVF+ + DQ Sbjct: 61 GTDA---GDFATEQPILVVADHGNQNAATVRFLVDGAEP--PPVSDYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W+ LK G+ Sbjct: 116 QLDAARDQWKRLKGEGH 132 >gi|159184617|ref|NP_354131.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58] gi|159139915|gb|AAK86916.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58] Length = 149 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G +V++Q + RD L+ +LWT++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDDERRDFLDTHLWTFRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D QP+LLT SS N N + +RFLVD A V+ YE+VVF+ + D Sbjct: 61 ATDASSA---PQNQPILLTASSENGNAANVRFLVDGAEPLA--VETYERVVFMFDGYDAY 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R HW++LK G++ Sbjct: 116 QLEMARNHWKTLKAEGHS 133 >gi|260466944|ref|ZP_05813126.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum WSM2075] gi|259029241|gb|EEW30535.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum WSM2075] Length = 149 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ ++G R VQ G++ RD+L+++LWT++ D FL H Sbjct: 1 MAEVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTDERRDALDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D + QPVLLT N N + IRFLVD A+ D+ YE+ VF+ + D Sbjct: 61 AT---DREAYPGEQPVLLTTGDGNPNEAKIRFLVDGAA--PPDLSGYERAVFLFDGHDAA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ RAHW+++K++G++ Sbjct: 116 QVDAARAHWKTMKDAGHS 133 >gi|307317714|ref|ZP_07597152.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83] gi|306896476|gb|EFN27224.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83] Length = 149 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D G+F++ QP+L+ N N +T+RF+VD A V YE+VVF+ + DQ Sbjct: 61 GTDA---GEFAAEQPILVVADDGNRNAATVRFVVDGAEP--PPVSEYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE R W+ LK G+ Sbjct: 116 QLEAARDQWKRLKGEGH 132 >gi|222148156|ref|YP_002549113.1| hypothetical protein Avi_1546 [Agrobacterium vitis S4] gi|221735144|gb|ACM36107.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 149 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+G +V V+ D L+++LWT++ D FL H Sbjct: 1 MTEVLFYHLTETRLEDALPALLEKSVERGWKVGVEMRDPERCDRLDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ +G++ + QP+LL +SS N N +T+RF +D A + V Y+++VF+ + DQG Sbjct: 61 GISIGEQAE---AQPILLCLSSDNPNGATVRFYIDGAVPDLPLV--YDRIVFVFDGHDQG 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R W+ LK G+A Sbjct: 116 ELETARGEWKRLKGEGHA 133 >gi|158422164|ref|YP_001523456.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571] gi|158329053|dbj|BAF86538.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571] Length = 149 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L VLL+ E+G R VQ GS RD+L+ +LWT+ FLPH Sbjct: 1 MTEVLFYHLERRPLEDALPVLLEKSLERGWRCVVQAGSPERRDALDAHLWTYNDASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + QPVLLT+ N N + +RFLVD A I D Y +VV + + D+ Sbjct: 61 GTDAQPRPE---RQPVLLTLDEANPNDAQVRFLVDGA--RIADASPYVRVVHMFDGRDET 115 Query: 120 SLEWGRAHWRSLKNSGY 136 ++ R WR K +G+ Sbjct: 116 AVAAARERWREAKAAGH 132 >gi|218659074|ref|ZP_03515004.1| DNA polymerase III subunit chi [Rhizobium etli IE4771] Length = 121 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 6/126 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDVHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ N N +T+RF+VD A YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTPDNPNAATVRFIVDGAEP--PPAASYERIVFMFDGHDQE 115 Query: 120 SLEWGR 125 LE R Sbjct: 116 QLEAAR 121 >gi|90423818|ref|YP_532188.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB18] gi|90105832|gb|ABD87869.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB18] Length = 150 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 7/139 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ ++G RV VQ +E D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMTVEKVLPSLLEKSLQRGWRVVVQATTEERADALDTHLWTYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D +S QP++LT N N + +RFL+D A++ DV Y+++V + N DD+ Sbjct: 61 ATWRVAD----ASQQPIVLTADEANPNGAKVRFLIDNAALPT-DVALYDRLVLVFNGDDE 115 Query: 119 GSLEWGRAHWRSLKNSGYA 137 S+ RA W K+ G+A Sbjct: 116 DSVVMARAAWTDSKSRGFA 134 >gi|218682145|ref|ZP_03529746.1| DNA polymerase III subunit chi [Rhizobium etli CIAT 894] Length = 102 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 63/90 (70%), Gaps = 5/90 (5%) Query: 47 YLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY 106 +LWT++++ FLPHG+D EGDF+ QPVLLT++S NAN +T+RF++D A V+ Y Sbjct: 1 HLWTFREESFLPHGID---EGDFAESQPVLLTVTSGNANAATVRFIIDGAEP--PPVEAY 55 Query: 107 EKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 E++VF+ + DQ LE RA W+ LK G+ Sbjct: 56 ERIVFMFDGHDQEQLEAARAQWKKLKGEGH 85 >gi|254473341|ref|ZP_05086738.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062] gi|211957457|gb|EEA92660.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062] Length = 149 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY+ K E L LL+ E+ V+VQ G+E D+++ YLWT+ DGFLPH Sbjct: 1 MSEVLFYQLSKFPLERALPTLLEKCLERDWVVTVQFGTEERCDAIDSYLWTYSDDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G EG FQP+ LT S N N + +RFLVD A + D Y++VV++ + +DQ Sbjct: 61 G--TKKEG-HPEFQPIYLTTESDNPNEAIVRFLVDRAPL--PDPAQYQRVVYMFDGNDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 +L+ R W +KNS + Sbjct: 116 ALQEARQRWLEVKNSDH 132 >gi|75675867|ref|YP_318288.1| DNA polymerase III subunit chi [Nitrobacter winogradskyi Nb-255] gi|74420737|gb|ABA04936.1| DNA polymerase III, chi subunit [Nitrobacter winogradskyi Nb-255] Length = 150 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ +E+G R V SE D+L+ +LW+++ D FLPH Sbjct: 1 MTEVLFYHLQNMSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 + D G+ QP++LT+ N N +T+RFL+D A + ++D YE++V I + DD Sbjct: 61 ATWRIEDAGE----QPIVLTVDGRNPNRATVRFLIDNAPLP-ENLDTYERLVLIFDGDDG 115 Query: 119 GSLEWGRAHWRSLKNSG 135 +L+ RA W K+ G Sbjct: 116 AALDAARAIWTECKSRG 132 >gi|319784421|ref|YP_004143897.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170309|gb|ADV13847.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 149 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ ++G R VQ G+E RD+L+++LWT++ D FL H Sbjct: 1 MADVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D QP+LLT N N + IRFLVD A D+ YE+ VF+ + D Sbjct: 61 AT---DREAHPGEQPILLTTGDGNPNDAKIRFLVDGAV--PPDLGGYERAVFLFDGHDAA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE R HW+ +K++G+ Sbjct: 116 QLEAARGHWKVMKSAGH 132 >gi|27379220|ref|NP_770749.1| DNA polymerase III subunit chi [Bradyrhizobium japonicum USDA 110] gi|27352371|dbj|BAC49374.1| blr4109 [Bradyrhizobium japonicum USDA 110] Length = 150 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N N+L LL+ E+G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMTVENVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D D QP++L I N N + +RFLVD A++ D YE++V + N DD Sbjct: 61 ATWRVNDAAD----QPIVLAIEEDNPNGAHVRFLVDNAALP-QDAQGYERMVLLFNGDDP 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 +L R+ W K G+ Sbjct: 116 DALALARSAWTDCKARGF 133 >gi|146340306|ref|YP_001205354.1| DNA polymerase III subunit chi [Bradyrhizobium sp. ORS278] gi|146193112|emb|CAL77123.1| putative DNA polymerase III, chi subunit, HolC [Bradyrhizobium sp. ORS278] Length = 150 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQSMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D + QP++L I N N + +RFLVD A + D YE++V + N DD Sbjct: 61 ATWRVADVAE----QPIVLAIEESNPNRANVRFLVDNAPLP-SDSQSYERMVLVFNGDDP 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 +L R+ W KN G+ Sbjct: 116 DALAAARSAWTDCKNRGF 133 >gi|154253773|ref|YP_001414597.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans DS-1] gi|154157723|gb|ABS64940.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans DS-1] Length = 149 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ E+G R V+ G D+LN LWT+ D FLPH Sbjct: 1 MTEVLFYHLQNAPLEQVLPQLLERSLERGWRAIVRAGGPERLDALNNVLWTYSDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+G ++ +PV LT+ N N + + FLVD A+ G++ YE+ V + + D+ Sbjct: 61 G--TLDDGP-AALEPVFLTVDDENPNNANVLFLVDGAA--PGNIGPYERCVLMFDGRDEA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 +L R HW++LK G+ Sbjct: 116 ALAAAREHWKTLKAEGH 132 >gi|170743501|ref|YP_001772156.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46] gi|168197775|gb|ACA19722.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46] Length = 150 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+ RV VQ SE +L+++LWT+ ++ FLPH Sbjct: 1 MTEILFYHMQRQPLESVLPNLLEKSLERRWRVVVQAASEERLAALDDHLWTFSEESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D E D + QPV+LT+ N N +TIRFLV+ A++ D YE++ + + DQ Sbjct: 61 GTD--REPDAGT-QPVVLTLRDANPNGATIRFLVEGAALP-ADAGRYERICVLFDGSDQE 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR+ K +G++ Sbjct: 117 ALLLAREQWRAAKEAGHS 134 >gi|154245406|ref|YP_001416364.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus Py2] gi|154159491|gb|ABS66707.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus Py2] Length = 153 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+G R VQCGS RD+L+ +LWT+ + FLPH Sbjct: 1 MTEILFYHLERRPLEQVLPTLLEKSLERGWRCVVQCGSAERRDALDAHLWTYNEASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + QPVLL + N N + +RFLVD ++ + D Y +VV + + D Sbjct: 61 GTEA---QPVPERQPVLLATTEANPNGAQVRFLVD--AVPLADAAPYVRVVHLFDGRDDE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 + R WR K + A Sbjct: 116 QVAAARERWREAKAAATA 133 >gi|170749513|ref|YP_001755773.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans JCM 2831] gi|170656035|gb|ACB25090.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans JCM 2831] Length = 150 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L++ ++G + ++Q SE +L+++LWT+ + FLPH Sbjct: 1 MTEILFYHMQRQPLEKVLPNLVERSLDRGWQAAIQAASEERLQALDDHLWTYSDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D E D +S QPV+LT+ +N NT++IRFLV+ A + D YE++ + + DQ Sbjct: 61 GTDR--EPDAAS-QPVVLTLRDVNPNTASIRFLVEGADL-PPDAGQYERICILFDGTDQD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R W+ K++G+A Sbjct: 117 ALLRAREQWKQAKDAGHA 134 >gi|85716327|ref|ZP_01047300.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A] gi|85696843|gb|EAQ34728.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A] Length = 150 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ +E+G R V SE D+L+ +LW+++ D FLPH Sbjct: 1 MTEVLFYHLQNTSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 + D +S QP++LT+ N N +T+RFL+D A + D YE++V I + DD Sbjct: 61 ATWRIED----ASEQPIVLTVDGRNPNGATVRFLIDSAPLP-ESPDTYERLVLIFDGDDS 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 +L+ RA W K+ G+ Sbjct: 116 VALDAARAVWTECKSRGF 133 >gi|86749602|ref|YP_486098.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris HaA2] gi|86572630|gb|ABD07187.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris HaA2] Length = 150 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ GSE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQAGSEERADTLDAHLWTYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D + QP++LT N N +T+RFL+D A++ D + YE++V + + DD+ Sbjct: 61 ATWRVAD----AMHQPIVLTAEESNPNAATVRFLLDNAALP-ADAEGYERMVLLFDGDDE 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 ++ R W+ K+ G+ Sbjct: 116 DAVGMARDMWKQSKSRGF 133 >gi|92117861|ref|YP_577590.1| DNA polymerase III subunit chi [Nitrobacter hamburgensis X14] gi|91800755|gb|ABE63130.1| DNA polymerase III, chi subunit [Nitrobacter hamburgensis X14] Length = 151 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ E+G R V SE D+L+ YLWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMALESVLPPLLEKTIERGWRAVVHTTSEERADALDAYLWTYRDDAFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 + D +S QP+LLTI N N +T+RFL+D A + + + YE++V + + DD Sbjct: 61 ATWRIED----ASEQPILLTIDGHNPNRATVRFLIDSAPLP-ENPEAYERLVLVFDGDDG 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 +L+ R+ W K G+ Sbjct: 116 IALDAARSVWTECKARGF 133 >gi|115525292|ref|YP_782203.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisA53] gi|115519239|gb|ABJ07223.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisA53] Length = 150 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ ++G RV VQ SE D+L+ +LWT+++D FLPH Sbjct: 1 MTEVLFYHLQGVTVEKVLPSLLEKSLQRGWRVVVQSTSEERTDALDTHLWTYREDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D ++ QP++L N N +T+RFL+D A++ D+ Y+++V + N DD Sbjct: 61 ATWRVAD----AAQQPIVLVADEGNPNGATVRFLIDNAALP-ADIASYDRMVLVFNGDDD 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 ++ RA W + K G+ Sbjct: 116 EAIALARAAWTASKAKGF 133 >gi|220925407|ref|YP_002500709.1| DNA polymerase III subunit chi HolC [Methylobacterium nodulans ORS 2060] gi|219950014|gb|ACL60406.1| DNA polymerase III chi subunit HolC [Methylobacterium nodulans ORS 2060] Length = 150 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+ RV++Q SE +L+++LWT+ + FLPH Sbjct: 1 MTEILFYHMQRQPLESVLPSLLEKSLERRWRVAIQATSEERLQALDDHLWTFSDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D E D ++ QPV+LT+ N N ++IRFLVD A + D Y ++ + + DQ Sbjct: 61 GTD--REPDPAT-QPVVLTLREANPNGASIRFLVDGAPLP-EDAGSYARICILFDGTDQD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L + R WR+ K +G++ Sbjct: 117 ALLFAREQWRAAKGAGHS 134 >gi|218516793|ref|ZP_03513633.1| DNA polymerase III subunit chi [Rhizobium etli 8C-3] Length = 104 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 6/109 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEK 108 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE+ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YER 104 >gi|91977432|ref|YP_570091.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB5] gi|91683888|gb|ABE40190.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB5] Length = 150 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ GSE ++L+ +LWT++ D FLPH Sbjct: 1 MTDVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSGSEERTETLDAHLWTYRDDSFLPH 60 Query: 60 GVD-VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D ++ QP++LT N N + +RFL+D ++ D + YE++V + + DD Sbjct: 61 ATSRVAD----AAHQPIVLTAEEGNPNAAMVRFLLDNVALP-ADAESYERMVLLFDGDDD 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 ++ R W+ K+ G+ Sbjct: 116 DAVAMARVAWKQSKSRGF 133 >gi|298291098|ref|YP_003693037.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506] gi|296927609|gb|ADH88418.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506] Length = 148 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY ++ E L LL+ E+G R +VQ S ++L++ LWT+ + FLPH Sbjct: 1 MTEVFFYHLQSRPLEAALPQLLEKCLERGWRCTVQSSSPERIEALDQLLWTYDEASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + S QP+LLT S N N +T+RF +D AS D+ Y +V+ + + +D Sbjct: 61 GTDRQPD---SGRQPILLTTSESNPNGATVRFFIDSASA--PDLSPYARVIHLFDGNDSD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 +L+ R WR +++G+ Sbjct: 116 ALDHARTAWREARSAGH 132 >gi|316933710|ref|YP_004108692.1| DNA polymerase III subunit chi HolC [Rhodopseudomonas palustris DX-1] gi|315601424|gb|ADU43959.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris DX-1] Length = 150 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ SE D+L+ +LWT+++D FLPH Sbjct: 1 MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDGHLWTYREDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D ++ QP+LLT N N + +RFLVD A++ D D YE++V + N DD Sbjct: 61 ATWRVAD----AAQQPILLTAGDGNPNGAKVRFLVDNAALP-EDSDSYERMVLLFNGDDD 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 ++ R W+ K + Sbjct: 116 EAVAMARDAWKQCKARAF 133 >gi|148255230|ref|YP_001239815.1| DNA polymerase III subunit chi [Bradyrhizobium sp. BTAi1] gi|146407403|gb|ABQ35909.1| DNA polymerase III, chi subunit [Bradyrhizobium sp. BTAi1] Length = 150 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ E+G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D D QP++L + N N + +RFLVD A + D YE++V + N DD Sbjct: 61 ATWRVADVAD----QPIVLAVEESNPNQANVRFLVDNAPL-PSDAHTYERMVLVFNGDDD 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 +L RA W K G+ Sbjct: 116 EALAAARAAWTDCKTRGF 133 >gi|39936122|ref|NP_948398.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris CGA009] gi|192291840|ref|YP_001992445.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris TIE-1] gi|39649976|emb|CAE28500.1| hypothetical protein RPA3059 [Rhodopseudomonas palustris CGA009] gi|192285589|gb|ACF01970.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris TIE-1] Length = 150 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDSHLWTYRDDSFLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D ++ QP+LLT N N + +RFLVD A++ D YE++V + N DD Sbjct: 61 ATWRVAD----AAHQPILLTTGEGNPNGAKVRFLVDNAAL-PEDSGSYERMVLLFNGDDD 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 ++ R W+ K + Sbjct: 116 EAVAMARDAWKQCKAKAF 133 >gi|323137701|ref|ZP_08072777.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242] gi|322396998|gb|EFX99523.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242] Length = 159 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 13/143 (9%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY N E L VLL+ +G RV +Q SE L++YLW+++ + FLPH Sbjct: 1 MPEIAFYHHTNSTLEQTLPVLLEKSLARGWRVVIQAASEARLRRLDQYLWSYRPESFLPH 60 Query: 60 GVDVGDEGDFSS-FQPVLLTISSLNANTSTIRFLVDEASMHIG-----DVDYYEKVVFII 113 G + D S QP+ LT ++ N N + +RF V+ A HI D E+ V + Sbjct: 61 GT----KADASPQTQPIYLTCAADNPNGADVRFFVEGA--HIAPVLQSDAAPRERAVLLF 114 Query: 114 NTDDQGSLEWGRAHWRSLKNSGY 136 + +D+ L RA W+ L+++G+ Sbjct: 115 SGEDEAELAGARAQWKELRDAGH 137 >gi|121602532|ref|YP_988824.1| DNA polymerase III subunit chi [Bartonella bacilliformis KC583] gi|120614709|gb|ABM45310.1| DNA polymerase III, chi subunit [Bartonella bacilliformis KC583] Length = 149 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY N+L VL++ RV++QC +E RD+++++LW + F+ H Sbjct: 1 MVDILFYHLTQSTPENVLPVLVERALNNFDRVTIQCINEERRDAMDKHLWVYADGAFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ QPV LT + N N STIRFL++ A D+ Y+++V + ++ D+ Sbjct: 61 GTEC---DEYPDLQPVFLTTGNENPNNSTIRFLIEGAV--CSDIHSYQRLVVMFDSRDET 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L RA W++ K + Sbjct: 116 QLNTARAQWKNYKAQNH 132 >gi|239831523|ref|ZP_04679852.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301] gi|239823790|gb|EEQ95358.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301] Length = 149 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV++Q SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLARGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT S N N +T+RFLV+ A + D YE++V + + DQ Sbjct: 61 GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLEQADA--YERLVVMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W+S K + Sbjct: 116 QLDIARGQWKSFKAENH 132 >gi|188584381|ref|YP_001927826.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001] gi|179347879|gb|ACB83291.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001] Length = 150 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+G + ++Q SE +L++ LWT+ + FLPH Sbjct: 1 MTEILFYHLQRQPLEKVLPNLLEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + ++ QPV+LT+ N N ++IRFLV+ A + D Y+++ + + D Sbjct: 61 GTDRDTD---AASQPVVLTLRETNPNAASIRFLVEGAEL-PEDAGSYQRICILFDGTDTD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR K +G+A Sbjct: 117 ALLHAREQWRGAKAAGHA 134 >gi|163854052|ref|YP_001642095.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens PA1] gi|218532995|ref|YP_002423811.1| DNA polymerase III chi subunit HolC [Methylobacterium chloromethanicum CM4] gi|254564020|ref|YP_003071115.1| hypothetical protein METDI5706 [Methylobacterium extorquens DM4] gi|163665657|gb|ABY33024.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens PA1] gi|218525298|gb|ACK85883.1| DNA polymerase III chi subunit HolC [Methylobacterium chloromethanicum CM4] gi|254271298|emb|CAX27310.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 150 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L++ E+G + ++Q SE +L++ LWT+ + FLPH Sbjct: 1 MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + ++ QPV+LT+ N N ++IRFLV+ A + D + Y+++ + + D Sbjct: 61 GTDRDTD---AASQPVVLTLRETNPNGASIRFLVEGAELP-EDAESYQRICILFDGTDTD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR K +G+A Sbjct: 117 ALLHAREQWRGAKAAGHA 134 >gi|254502537|ref|ZP_05114688.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii DFL-11] gi|222438608|gb|EEE45287.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii DFL-11] Length = 150 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 5/111 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 E+ +V VQ GS+ ++L+ +LWT++ D FLPHG ++ QP+ LT N N Sbjct: 28 ERNWKVVVQTGSQERCNALDAHLWTYQDDSFLPHGTKA---DGYAEHQPIYLTFEQDNPN 84 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 + +RFLVD A+ +D Y++ +++ + +DQG+++ R W+ K+SG+ Sbjct: 85 EADVRFLVDRAAPPT--LDPYKRAIYMFDGNDQGAVDEARTAWKEAKSSGF 133 >gi|240141506|ref|YP_002965986.1| hypothetical protein MexAM1_META1p5105 [Methylobacterium extorquens AM1] gi|240011483|gb|ACS42709.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 150 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L++ E+G + ++Q SE +L++ LWT+ + FLPH Sbjct: 1 MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + ++ QPV+LT+ N N ++IRFLV+ A + D + Y+++ + + D Sbjct: 61 GTDRDTD---AARQPVVLTLRETNPNGASIRFLVEGAELP-EDAESYQRICILFDGTDTD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR K +G+A Sbjct: 117 ALLHAREQWRGAKAAGHA 134 >gi|90419504|ref|ZP_01227414.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas manganoxydans SI85-9A1] gi|90336441|gb|EAS50182.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas manganoxydans SI85-9A1] Length = 150 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 7/139 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ +G RV VQ SE RD+L+ +LW ++ + FLPH Sbjct: 1 MTEVLFYHLTQSRLEEALPDLLEKSLGRGWRVVVQFSSEERRDALDHHLWVYRDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G D G + QP+LLT+ + AN +RFLVD A ++ Y + V++ + D Sbjct: 61 GSDSDSSG---ALQPILLTVEAEQKANDPQVRFLVDGAVP--ASLEGYVRAVYLFDGHDA 115 Query: 119 GSLEWGRAHWRSLKNSGYA 137 L+ R+ W+ K +G+A Sbjct: 116 EQLDLARSRWKVEKAAGHA 134 >gi|114704777|ref|ZP_01437685.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506] gi|114539562|gb|EAU42682.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506] Length = 150 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LLQ +G RV VQC SE RDSL+ LWT+ ++ FLPH Sbjct: 1 MAEVLFYHLTESRLEDALPELLQRSLARGWRVVVQCTSEERRDSLDNVLWTFSEESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLN-ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G D E S QP+LLT + AN +RF+VD A+ GD+ Y + V++ + D Sbjct: 61 GTDA--EAHPES-QPILLTTRADQFANKPDVRFMVDGAT--PGDLTGYIRGVYMFDAFDT 115 Query: 119 GSLEWGRAHWRSLKNSGY 136 + R W+ K++G+ Sbjct: 116 DQMAHAREQWQVEKSAGH 133 >gi|153009926|ref|YP_001371141.1| DNA polymerase III subunit chi [Ochrobactrum anthropi ATCC 49188] gi|151561814|gb|ABS15312.1| DNA polymerase III chi subunit HolC [Ochrobactrum anthropi ATCC 49188] Length = 149 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV++Q SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT S N N +T+RFLV+ A + D YE++V + + DQ Sbjct: 61 GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLE--QADAYERLVVMFDGHDQD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 116 QLDIARGQWKNFKAGSH 132 >gi|225627187|ref|ZP_03785225.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo] gi|225618022|gb|EEH15066.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo] Length = 165 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 8/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+LN LWT+ F+ H Sbjct: 17 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 76 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118 G D + QPVLLT + N N +T+RFLV+ A + GD YE++V + + DQ Sbjct: 77 GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 130 Query: 119 GSLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 131 DQLDIARTQWKAFKAENH 148 >gi|256159415|ref|ZP_05457193.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1] gi|256254710|ref|ZP_05460246.1| DNA polymerase III subunit chi [Brucella ceti B1/94] gi|260168441|ref|ZP_05755252.1| DNA polymerase III subunit chi [Brucella sp. F5/99] gi|261221890|ref|ZP_05936171.1| DNA polymerase III subunit chi [Brucella ceti B1/94] gi|261757903|ref|ZP_06001612.1| DNA polymerase III chi subunit [Brucella sp. F5/99] gi|265997853|ref|ZP_06110410.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1] gi|260920474|gb|EEX87127.1| DNA polymerase III subunit chi [Brucella ceti B1/94] gi|261737887|gb|EEY25883.1| DNA polymerase III chi subunit [Brucella sp. F5/99] gi|262552321|gb|EEZ08311.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1] Length = 149 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 8/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+LN LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118 G D + QPVLLT + N N +T+RFLV+ A + GD YE++V + + DQ Sbjct: 61 GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 114 Query: 119 GSLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 115 DQLDIARTQWKAFKAENH 132 >gi|217978369|ref|YP_002362516.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2] gi|217503745|gb|ACK51154.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2] Length = 151 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M ++ + + L L++ EKG RV VQ SE +L+++LWT++ D FL HG Sbjct: 1 MEIWFYHLQRQSLDQALPALIEKSLEKGWRVVVQATSEERLAALDQHLWTYRDDSFLAHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQG 119 V +GD QPV L+ + N N + +R ++ A + D YE+ + N +D Sbjct: 61 RSVDGDGD---LQPVYLSTGAENPNGARLRIFIEGAPIAASLDAGPYERALSAFNGNDAD 117 Query: 120 SLEWGRAHWRSLKNSGYA 137 L R W+ LK+ G+A Sbjct: 118 ELAAARTQWKELKDRGFA 135 >gi|17987543|ref|NP_540177.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. 16M] gi|237815141|ref|ZP_04594139.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A] gi|17983245|gb|AAL52441.1| DNA polymerase iii, chi subunit [Brucella melitensis bv. 1 str. 16M] gi|237789978|gb|EEP64188.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A] Length = 165 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 8/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 17 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118 G D + QPVLLT + N N +T+RFLV+ A + GD YE++V + + DQ Sbjct: 77 GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 130 Query: 119 GSLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 131 DQLDIARTQWKAFKAENH 148 >gi|306838748|ref|ZP_07471582.1| DNA polymerase III subunit chi [Brucella sp. NF 2653] gi|306842044|ref|ZP_07474717.1| DNA polymerase III subunit chi [Brucella sp. BO2] gi|306287885|gb|EFM59305.1| DNA polymerase III subunit chi [Brucella sp. BO2] gi|306406150|gb|EFM62395.1| DNA polymerase III subunit chi [Brucella sp. NF 2653] Length = 165 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 8/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 17 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118 G D + QPVLLT + N N +T+RFLV+ A + GD YE++V + + DQ Sbjct: 77 GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 130 Query: 119 GSLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 131 DQLDIARTQWKAFKAENH 148 >gi|23501577|ref|NP_697704.1| DNA polymerase III subunit chi [Brucella suis 1330] gi|62289652|ref|YP_221445.1| DNA polymerase III subunit chi [Brucella abortus bv. 1 str. 9-941] gi|82699579|ref|YP_414153.1| DNA polymerase III subunit chi [Brucella melitensis biovar Abortus 2308] gi|148559893|ref|YP_001258671.1| DNA polymerase III subunit chi [Brucella ovis ATCC 25840] gi|161618659|ref|YP_001592546.1| DNA polymerase III subunit chi [Brucella canis ATCC 23365] gi|163842960|ref|YP_001627364.1| DNA polymerase III subunit chi [Brucella suis ATCC 23445] gi|189023901|ref|YP_001934669.1| DNA polymerase III subunit chi [Brucella abortus S19] gi|225852210|ref|YP_002732443.1| DNA polymerase III subunit chi [Brucella melitensis ATCC 23457] gi|254688961|ref|ZP_05152215.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870] gi|254693443|ref|ZP_05155271.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya] gi|254697096|ref|ZP_05158924.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str. 86/8/59] gi|254701473|ref|ZP_05163301.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513] gi|254704020|ref|ZP_05165848.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686] gi|254707607|ref|ZP_05169435.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10] gi|254709811|ref|ZP_05171622.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94] gi|254718825|ref|ZP_05180636.1| DNA polymerase III subunit chi [Brucella sp. 83/13] gi|254729991|ref|ZP_05188569.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292] gi|256031302|ref|ZP_05444916.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1] gi|256044382|ref|ZP_05447286.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. Rev.1] gi|256060815|ref|ZP_05450975.1| DNA polymerase III subunit chi [Brucella neotomae 5K33] gi|256113225|ref|ZP_05454093.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str. Ether] gi|256257210|ref|ZP_05462746.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68] gi|256264282|ref|ZP_05466814.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str. 63/9] gi|256369124|ref|YP_003106632.1| DNA polymerase III subunit chi [Brucella microti CCM 4915] gi|260545597|ref|ZP_05821338.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038] gi|260563734|ref|ZP_05834220.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M] gi|260566732|ref|ZP_05837202.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40] gi|260754451|ref|ZP_05866799.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870] gi|260757670|ref|ZP_05870018.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292] gi|260761497|ref|ZP_05873840.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str. 86/8/59] gi|260883480|ref|ZP_05895094.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68] gi|261213697|ref|ZP_05927978.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya] gi|261315096|ref|ZP_05954293.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10] gi|261317349|ref|ZP_05956546.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94] gi|261324807|ref|ZP_05964004.1| DNA polymerase III subunit chi [Brucella neotomae 5K33] gi|261752016|ref|ZP_05995725.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513] gi|261754675|ref|ZP_05998384.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686] gi|265983811|ref|ZP_06096546.1| DNA polymerase III subunit chi [Brucella sp. 83/13] gi|265988387|ref|ZP_06100944.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1] gi|265990801|ref|ZP_06103358.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. Rev.1] gi|265994637|ref|ZP_06107194.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str. Ether] gi|294852052|ref|ZP_06792725.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026] gi|297248059|ref|ZP_06931777.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196] gi|306845290|ref|ZP_07477866.1| DNA polymerase III subunit chi [Brucella sp. BO1] gi|23347490|gb|AAN29619.1| conserved hypothetical protein [Brucella suis 1330] gi|62195784|gb|AAX74084.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82615680|emb|CAJ10667.1| DNA polymerase III chi subunit, HolC [Brucella melitensis biovar Abortus 2308] gi|148371150|gb|ABQ61129.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161335470|gb|ABX61775.1| DNA polymerase III chi subunit HolC [Brucella canis ATCC 23365] gi|163673683|gb|ABY37794.1| DNA polymerase III chi subunit HolC [Brucella suis ATCC 23445] gi|189019473|gb|ACD72195.1| DNA polymerase III chi subunit, HolC [Brucella abortus S19] gi|225640575|gb|ACO00489.1| DNA polymerase III chi subunit HolC [Brucella melitensis ATCC 23457] gi|255999284|gb|ACU47683.1| DNA polymerase III subunit chi [Brucella microti CCM 4915] gi|260097004|gb|EEW80879.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038] gi|260153750|gb|EEW88842.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M] gi|260156250|gb|EEW91330.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40] gi|260667988|gb|EEX54928.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292] gi|260671929|gb|EEX58750.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str. 86/8/59] gi|260674559|gb|EEX61380.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870] gi|260873008|gb|EEX80077.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68] gi|260915304|gb|EEX82165.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya] gi|261296572|gb|EEY00069.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94] gi|261300787|gb|EEY04284.1| DNA polymerase III subunit chi [Brucella neotomae 5K33] gi|261304122|gb|EEY07619.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10] gi|261741769|gb|EEY29695.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513] gi|261744428|gb|EEY32354.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686] gi|262765750|gb|EEZ11539.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str. Ether] gi|263001585|gb|EEZ14160.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. Rev.1] gi|263094542|gb|EEZ18351.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str. 63/9] gi|264660584|gb|EEZ30845.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1] gi|264662403|gb|EEZ32664.1| DNA polymerase III subunit chi [Brucella sp. 83/13] gi|294820641|gb|EFG37640.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026] gi|297175228|gb|EFH34575.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196] gi|306274449|gb|EFM56256.1| DNA polymerase III subunit chi [Brucella sp. BO1] gi|326408709|gb|ADZ65774.1| DNA polymerase III chi subunit, HolC [Brucella melitensis M28] gi|326538433|gb|ADZ86648.1| DNA polymerase III chi subunit HolC [Brucella melitensis M5-90] Length = 149 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 8/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118 G D+ QPVLLT + N N +T+RFLV+ A + GD YE++V + + DQ Sbjct: 61 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 114 Query: 119 GSLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 115 DQLDIARTQWKAFKAENH 132 >gi|240850233|ref|YP_002971626.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup] gi|240267356|gb|ACS50944.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup] Length = 148 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 6/134 (4%) Query: 4 LLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 +LFY ++L L++ + +V++QC SE RDS++ +LW + + F+ HG + Sbjct: 3 ILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSEEQRDSMDMHLWVYADESFIGHGTE 62 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 +S+FQPV LT N N S IRFL++ A ++D Y+++V I + D L Sbjct: 63 C---DQYSNFQPVFLTTGQENPNDSKIRFLIEGAV--CSNIDTYQRLVVIFDGRDDEQLS 117 Query: 123 WGRAHWRSLKNSGY 136 RA W+ K + Sbjct: 118 LVRAQWKKYKMENH 131 >gi|209964868|ref|YP_002297783.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum centenum SW] gi|209958334|gb|ACI98970.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum centenum SW] Length = 149 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E +L LL+ E+G R V SE ++L ++LWTWK D FLPH Sbjct: 1 MTDVRFYHLTRKTLEQSLPELLEKTLERGWRAVVLAASEERAEALAQHLWTWKPDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G +G + QPV L+ + N + + FLVD A YE+V + + +D Sbjct: 61 G--TARDG-HPARQPVFLSATDERPNDANVLFLVDGAE--TARAPEYERVCDLFDGNDPD 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR+ K +G+A Sbjct: 116 ALAAARQRWRTAKAAGHA 133 >gi|118590097|ref|ZP_01547500.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata IAM 12614] gi|118437069|gb|EAV43707.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata IAM 12614] Length = 150 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 + + ++ E L LLQ E+ +V VQ G+E +L+ +LWT+ DGFLPHG Sbjct: 3 VEVVFYHLLHKPLEMALPQLLQKCLERDWKVVVQTGTEERCSALDAHLWTFTDDGFLPHG 62 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 +S QP+ LT N N + +RFLVD A+ + Y++ +++ + +D + Sbjct: 63 TKA---DGYSEHQPIYLTADQDNPNDADVRFLVDRAT--PPPLTAYKRAIYMFDGNDTDA 117 Query: 121 LEWGRAHWRSLKNSGY 136 ++ R W+ K G+ Sbjct: 118 VQEARNRWKEAKAEGF 133 >gi|254713815|ref|ZP_05175626.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1] gi|254717127|ref|ZP_05178938.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1] gi|261218942|ref|ZP_05933223.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1] gi|261321559|ref|ZP_05960756.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1] gi|260924031|gb|EEX90599.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1] gi|261294249|gb|EEX97745.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1] Length = 149 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 8/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118 G D+ QPVLLT + N N +T+RFLV+ A + GD YE++V + + DQ Sbjct: 61 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 114 Query: 119 GSLEWGRAHWRSLKNSGY 136 L+ R W + K + Sbjct: 115 DQLDIARTQWEAFKAENH 132 >gi|89054307|ref|YP_509758.1| DNA polymerase III subunit chi [Jannaschia sp. CCS1] gi|88863856|gb|ABD54733.1| DNA polymerase III chi subunit HolC [Jannaschia sp. CCS1] Length = 154 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 6 FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY + E L VLL + G RV+V+ ++ V D L+E LW +DGFLPHG Sbjct: 6 FYHLTQAPLEVTLRVLLGKSLQAGWRVAVRGRTDAVLDRLDEQLWLVPEDGFLPHGR--- 62 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124 GD + QPVLLT N T V+ AS+ +VD ++V+ + + D +L+ Sbjct: 63 AGGDHDAAQPVLLTTGPAG-NDPTCLVSVEGASIDAAEVDAMDRVMVLFDGHDDAALQTA 121 Query: 125 RAHWRSLKNSGYA 137 R W++L +G A Sbjct: 122 REQWKTLTAAGVA 134 >gi|319408321|emb|CBI81974.1| putative DNA polymerase III chi subunit [Bartonella schoenbuchensis R1] Length = 148 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M L ++ ++ E L VL++ + +RV++QC SE RD+++ LW + + F+ HG Sbjct: 1 MDILFYHLTQSTLEDILPVLVERAVARFERVTIQCISEEQRDAIDTRLWVYAEGSFIGHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + +FQPV LT N N S IRFL++ A D++ Y+++V I + + Sbjct: 61 TEC---DKYPNFQPVFLTTGHENPNDSKIRFLIEGAVC--PDINIYQRLVVIFDGRNNEQ 115 Query: 121 LEWGRAHWRS 130 L RA W+ Sbjct: 116 LNLARAQWKE 125 >gi|307946746|ref|ZP_07662081.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4] gi|307770410|gb|EFO29636.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4] Length = 150 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 4 LLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 + ++ E L LL ++ +V VQ GS+ D+L+ +LWT+ D FLPHG Sbjct: 6 VFYHLLHKPLEAALPQLLLKCLDRDCKVVVQTGSQERCDALDAHLWTFSDDSFLPHGTKA 65 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 + FQP+ LT N N + +RFLVD A + Y++ +++ + D+ ++ Sbjct: 66 DGHAE---FQPIYLTCEDDNPNQADVRFLVDRAVR--PPLHGYQRAIYMFDGRDEEAVAE 120 Query: 124 GRAHWRSLKNSGY 136 R +W+S K+ G+ Sbjct: 121 ARQNWKSAKSEGF 133 >gi|163868029|ref|YP_001609233.1| DNA polymerase III subunit chi [Bartonella tribocorum CIP 105476] gi|161017680|emb|CAK01238.1| putative DNA polymerase III chi subunit [Bartonella tribocorum CIP 105476] Length = 148 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 6/130 (4%) Query: 4 LLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 +LFY ++L L++ + +V++QC S+ RDS++ +LW + + F+ HG + Sbjct: 3 ILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSKEQRDSIDMHLWVYADESFIGHGTE 62 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 +++ QPV LTI N N S IRFL++ A D++ Y+++V + + + L Sbjct: 63 C---DQYANLQPVFLTIGQENPNDSKIRFLIEGAV--CSDINVYQRLVVLFDGRNDEQLN 117 Query: 123 WGRAHWRSLK 132 + RA W+ K Sbjct: 118 FARAQWKKYK 127 >gi|328544009|ref|YP_004304118.1| DNA polymerase III, chi subunit protein [polymorphum gilvum SL003B-26A1] gi|326413753|gb|ADZ70816.1| Putative DNA polymerase III, chi subunit protein [Polymorphum gilvum SL003B-26A1] Length = 150 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 5 LFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 LFY ++ E L LL ++ RV VQ GS +L+ +LWT+ D FLPHG Sbjct: 6 LFYHLQHQPLEAMLPGLLMKCLDRDWRVVVQTGSPERCAALDAHLWTFADDAFLPHGTAA 65 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 + QP+ LT + N N +T+RFLVD A + YE+VV++ + D ++ Sbjct: 66 DGHAE---DQPIFLTAAGDNPNRATVRFLVDRA--QPPPLAGYERVVYVFDGRDPEAVAE 120 Query: 124 GRAHWRSLKNSGY 136 R W+ K G+ Sbjct: 121 ARLRWKEAKEQGF 133 >gi|260426697|ref|ZP_05780676.1| DNA polymerase III subunit chi [Citreicella sp. SE45] gi|260421189|gb|EEX14440.1| DNA polymerase III subunit chi [Citreicella sp. SE45] Length = 152 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL+ G RV V+ S D L++ LW ++GFLPH Sbjct: 1 MGAAYFYHLTQRPLEATLPVLLEKSLSAGWRVVVRGTSPGRMDWLDQRLWLGPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + N ++ VD A + +V E+V + + D Sbjct: 61 GLS---GGPHDALQPVLLTTGAAMPNDASCLMAVDGAEVSPEEVGKLERVCILFDGHDHE 117 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L+ R WR+L +G A Sbjct: 118 ALQAARGQWRALTGAGCA 135 >gi|126725338|ref|ZP_01741180.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150] gi|126704542|gb|EBA03633.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150] Length = 156 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY ++ E L ++ G RV V+ S+ D L++ LWT DGFLPH Sbjct: 1 MSATYFYHLTHEPLESALPKIIVKARAAGWRVVVRGTSDERLDWLDKQLWTQTADGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G F + QPVLLT SS N + +D A++ DV +E++ + N ++ Sbjct: 61 GRS---GGKFDADQPVLLTNSSETPNDAACLIAIDRAAISADDVAKFERICLMFNGNNGD 117 Query: 120 SLEWGRAHWRSLKNSGY 136 +L+ R W++L + G+ Sbjct: 118 ALDDARTQWKTLSDQGF 134 >gi|167646494|ref|YP_001684157.1| DNA polymerase III subunit chi [Caulobacter sp. K31] gi|167348924|gb|ABZ71659.1| DNA polymerase III chi subunit HolC [Caulobacter sp. K31] Length = 153 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E L LL+ +G R V+ G +L+ +LWTW+ D FLPHG+D DE + Q Sbjct: 19 EQVLPELLEKTLGRGWRALVRGGDPARLRALDAHLWTWRDDSFLPHGLD--DE-PMADRQ 75 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 PVLLT N N FL+D A GD+ +E+ + + + D+ +L R W++ K Sbjct: 76 PVLLTDKLDNPNGGQALFLLDGA--EPGDLSGFERCILLFDGRDEEALRLARGRWKAFKG 133 Query: 134 SGY 136 +G+ Sbjct: 134 AGH 136 >gi|16125938|ref|NP_420502.1| DNA polymerase III subunit chi [Caulobacter crescentus CB15] gi|221234701|ref|YP_002517137.1| DNA polymerase III subunit chi [Caulobacter crescentus NA1000] gi|13423106|gb|AAK23670.1| DNA polymerase III, chi subunit, putative [Caulobacter crescentus CB15] gi|220963873|gb|ACL95229.1| DNA polymerase III, chi subunit [Caulobacter crescentus NA1000] Length = 153 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%) Query: 6 FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY ++ E L LL+ +G + V+ G R ++L+++LWTW++D FLPHG+ Sbjct: 10 FYHLERSPLEAVLPELLEKTLGRGWKALVRGGDPRRIEALDQHLWTWREDSFLPHGL--- 66 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124 + QPVLLT + N N+ FL+D A GD+ + + + + D +L Sbjct: 67 ASEPMAERQPVLLTAAEGNPNSGDALFLIDGA--EPGDLSGVSRCILLFDGRDDQALAQA 124 Query: 125 RAHWRSLKNSGY 136 R W + K +G+ Sbjct: 125 RGRWSTFKKAGH 136 >gi|49474102|ref|YP_032144.1| DNA polymerase III subunit chi [Bartonella quintana str. Toulouse] gi|49239606|emb|CAF25963.1| hypothetical protein BQ04640 [Bartonella quintana str. Toulouse] Length = 153 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 RV++QC ++ RD+++ +LW + + F+ HG + + +FQPV LT N N S I Sbjct: 35 RVTIQCVNKERRDAIDMHLWVYADEAFIGHGTEC---DQYPNFQPVFLTTGQENPNDSKI 91 Query: 90 RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 RFL++ A D+D Y+++V I + L RA W+ K + Sbjct: 92 RFLIEGAI--CSDIDAYQRLVVIFDDHSDEQLNLVRAQWKKYKMENH 136 >gi|254510554|ref|ZP_05122621.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11] gi|221534265|gb|EEE37253.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11] Length = 152 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58 M + FY + E L VLL + G R++V+ G++ R D L+E LW ++GFLP Sbjct: 1 MGAVYFYHLTRQPLERTLPVLLDKARQAGWRIAVR-GTDPARMDWLDEKLWLGPEEGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG G + QPVLLT AN++ VD A + +V E+V + + D Sbjct: 60 HGRA---GGPHDAAQPVLLTTGPEAANSAACVMAVDGAPVEADEVTALERVCILFDGTDP 116 Query: 119 GSLEWGRAHWRSLKNSG 135 +++ R W++L +G Sbjct: 117 DAVQRARGQWKALTGAG 133 >gi|49475340|ref|YP_033381.1| DNA polymerase III subunit chi [Bartonella henselae str. Houston-1] gi|49238146|emb|CAF27354.1| hypothetical protein BH05460 [Bartonella henselae str. Houston-1] Length = 154 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 6/134 (4%) Query: 4 LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 +LFY ++ E L L++ + RV++QC S+ RD+++ LW + + F+ HG + Sbjct: 9 ILFYHLTQSTLEDILPTLVERALGRFSRVTIQCVSKERRDAIDTRLWVYADEAFIGHGTE 68 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 + +FQPV LT N N S IRFL++ A D++ Y+++V + + L Sbjct: 69 C---DQYPNFQPVFLTTGQENPNDSKIRFLIEGAI--CSDINAYQRLVVLFDGQSDEQLH 123 Query: 123 WGRAHWRSLKNSGY 136 RA W+ K + Sbjct: 124 IVRAQWKKYKMENH 137 >gi|56697303|ref|YP_167669.1| DNA polymerase III subunit chi [Ruegeria pomeroyi DSS-3] gi|56679040|gb|AAV95706.1| DNA polymerase III, chi subunit, putative [Ruegeria pomeroyi DSS-3] Length = 154 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58 M FY +N E L VLL G RV+V+ GS+ R L+E LW DGFLP Sbjct: 1 MGAAYFYHLTRNPLEATLPVLLTKALGAGWRVAVR-GSDPGRLVWLDEKLWLGPDDGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ G + QPVLLT + N + VD A++ +V E+V + + D Sbjct: 60 HGLA---GGAHDADQPVLLTTGADAPNGARCVMSVDGAAVTPEEVAALERVCILFDGTDP 116 Query: 119 GSLEWGRAHWRSLKNSGYA 137 ++E R WR+L +G A Sbjct: 117 AAVEAARGQWRALTAAGCA 135 >gi|260433489|ref|ZP_05787460.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis ITI-1157] gi|260417317|gb|EEX10576.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis ITI-1157] Length = 153 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY ++ E+ L VLL + G R++V+ D L+E LW ++ FLPH Sbjct: 1 MGAVYFYHLTRHPLEHTLPVLLDKARQAGWRIAVRGTDPARMDWLDERLWLGPEESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + QP+LLT AN VD A + +V E+V + + +D Sbjct: 61 GRA---GGPHDAMQPILLTTGPEAANDPACLMAVDGAEVAADEVTALERVCILFDGNDPQ 117 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L+ R W++L +G A Sbjct: 118 ALDHARGQWKALTAAGCA 135 >gi|126728785|ref|ZP_01744600.1| DNA polymerase III subunit chi [Sagittula stellata E-37] gi|126710715|gb|EBA09766.1| DNA polymerase III subunit chi [Sagittula stellata E-37] Length = 152 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58 M + FY + E L +LL E+G RV+V+ G++ R D L+ LW ++GFLP Sbjct: 1 MGAVFFYHLTRQPVEVTLGMLLTKSLERGWRVAVR-GTDPARLDWLDAKLWLEPEEGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ G F + QPVLLT + N +D A + + D E+V + + D Sbjct: 60 HGLA---GGKFDAEQPVLLTTALEAPNEPACLIALDGAEIRPEETDALERVCILFDGGDG 116 Query: 119 GSLEWGRAHWRSLKNSG 135 +++ R W++L ++G Sbjct: 117 AAVQAARGQWKALTSAG 133 >gi|85706344|ref|ZP_01037438.1| DNA polymerase III subunit chi [Roseovarius sp. 217] gi|85669117|gb|EAQ23984.1| DNA polymerase III subunit chi [Roseovarius sp. 217] Length = 152 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58 M FY + E L +LL+ G RV V+ G +R R L+E LW +DGFLP Sbjct: 1 MGAAYFYHLTRQPLEATLPMLLEKSLSVGWRVVVR-GRDRARMVWLDERLWLGPEDGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ G + + QPVLLT S N + +D A + +V ++V + + +D Sbjct: 60 HGLSGGPQ---DADQPVLLTTESARPNGAVCLMAIDAAEVSAQEVQMLDRVCILFDGNDD 116 Query: 119 GSLEWGRAHWRSLKNSG 135 +++ R W++L +G Sbjct: 117 AAVQAARGQWKTLTGAG 133 >gi|296446339|ref|ZP_06888284.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium OB3b] gi|296256112|gb|EFH03194.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium OB3b] Length = 155 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL+ +G R VQ S R +++E LW++ + FLPH Sbjct: 1 MTEVWFYHLQRRPLESALPKLLELSLARGWRAVVQAASPRRLATIDELLWSYDPESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVD--EASMHIGD--VDYYEKVVFIINT 115 G +GD S QPV LT+ N N + +R ++ EA+ + D ++ + + + Sbjct: 61 GTQ--RDGDPQS-QPVFLTLLPDNPNRADVRVFIESAEAAPVLADPAAAPTQRAMVMFDG 117 Query: 116 DDQGSLEWGRAHWRSLKNSGY 136 +D+ +L+ RA WR+LK +G+ Sbjct: 118 NDETALQNARAQWRTLKEAGH 138 >gi|114766155|ref|ZP_01445159.1| DNA polymerase III subunit chi [Pelagibaca bermudensis HTCC2601] gi|114541615|gb|EAU44657.1| DNA polymerase III subunit chi [Roseovarius sp. HTCC2601] Length = 152 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L +LL+ G RV+V+ D L++ LW +DGFLPH Sbjct: 1 MGAAYFYHLTQRPLEATLPLLLEKSLAAGWRVAVRGTDPGRIDWLDQRLWMGPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G G + QPVLLT+ N VD A + +V+ E+V + + D Sbjct: 61 G-QAG--GKHDALQPVLLTVQEALPNDPACLMAVDGAGVAPEEVNRLERVCILFDGHDGM 117 Query: 120 SLEWGRAHWRSLKNSG 135 +L+ R WR+L +G Sbjct: 118 ALDAARGQWRALTGAG 133 >gi|319405496|emb|CBI79115.1| putative DNA polymerase III chi subunit [Bartonella sp. AR 15-3] Length = 149 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY K+ + L VL++ ++ R+++QC S+ + ++ LW + + F+ H Sbjct: 1 MVDILFYHLTKSTLKDTLPVLVERALKRFGRITIQCMSKEQCNFIDTCLWVYSDESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ QPV LT N N S +RFL++ A D+D Y+++V + + + Sbjct: 61 GTEY---DNYPDLQPVFLTTGQENPNDSQVRFLIEGAV--CSDIDIYQRIVIMFDGHNDA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L R W+ K Y Sbjct: 116 QLNLIREQWKDYKTKNY 132 >gi|329890118|ref|ZP_08268461.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas diminuta ATCC 11568] gi|90403466|dbj|BAE91932.1| DNA polymerase III chi subunit [Brevundimonas diminuta] gi|328845419|gb|EGF94983.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas diminuta ATCC 11568] Length = 153 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 5/119 (4%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L LL+ ++G R ++ + D ++E LWT++ D FLPHG +G ++ QPVL Sbjct: 22 LPTLLERTLQRGWRALIRGATSHRLDDIDELLWTYRDDSFLPHGR---ADGGHAARQPVL 78 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L+ S N N + F+VD++ + G + + I + D+ +L R WR+LK G Sbjct: 79 LSESGENLNGAQALFIVDDSEL--GATQEFARCFIIFDGRDEQALNHARGRWRTLKADG 135 >gi|319898732|ref|YP_004158825.1| DNA polymerase III chi subunit [Bartonella clarridgeiae 73] gi|319402696|emb|CBI76242.1| putative DNA polymerase III chi subunit [Bartonella clarridgeiae 73] Length = 149 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY K+ + L VL++ ++ R+++QC S+ + ++ LW + + F+ H Sbjct: 1 MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCVSKEQCNFIDTCLWVYADESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + QPV LTI N N S +RFL++ A D+D Y+++V + + + Sbjct: 61 GTEY---DKYPDLQPVFLTIGQENPNGSKVRFLIEGAI--CSDIDIYQRLVIMFDGHNDE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L R W+ K Y Sbjct: 116 QLNLIRKQWKEYKTKNY 132 >gi|319404057|emb|CBI77645.1| putative DNA polymerase III chi subunit [Bartonella rochalimae ATCC BAA-1498] Length = 149 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY K+ + L VL++ ++ R+++QC ++ + ++ LW + + F+ H Sbjct: 1 MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + QPV LT N N S +RFL+D A DVD Y+++V + + + Sbjct: 61 GTEY---DKYPDLQPVFLTTGQENPNDSKVRFLIDGAV--CSDVDIYQRLVIMFDGHNDT 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L R W+ K Y Sbjct: 116 QLNLIREQWKDYKTKNY 132 >gi|149914660|ref|ZP_01903190.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b] gi|149811453|gb|EDM71288.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b] Length = 152 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 8/140 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58 M FY ++ E L +LL ++ G RV V+ G + VR + L+E LW ++GFLP Sbjct: 1 MGAAFFYHLTRHPLETTLPMLLGKAHQAGWRVIVR-GHDPVRIEWLDERLWLGPEEGFLP 59 Query: 59 HGV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 HG+ E D QPVLLT+S N + VD A + +V E+V + + D Sbjct: 60 HGLAGRPHEAD----QPVLLTVSEEIPNGALCLMAVDGAEVAPDEVSRLERVCILFDGHD 115 Query: 118 QGSLEWGRAHWRSLKNSGYA 137 +L+ R W++L ++G A Sbjct: 116 DAALQKARGQWKALTSAGCA 135 >gi|302383685|ref|YP_003819508.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides ATCC 15264] gi|302194313|gb|ADL01885.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides ATCC 15264] Length = 153 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L LL ++G R ++ R +++ LW+W+ D FL HG + ++ QP+L Sbjct: 22 LPELLDKTLQRGWRARIRVADPDRRAEIDDTLWSWRADSFLAHGQ---ADQPHAARQPIL 78 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 LT + N N S F+VD + M + + +E+ I + D+ +L+ R W++LK G Sbjct: 79 LTAGTENPNASQALFIVDGSDMTV--TEEFERCFIIFDGRDEAALQTARDRWKALKGQG 135 >gi|254418859|ref|ZP_05032583.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp. BAL3] gi|196185036|gb|EDX80012.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp. BAL3] Length = 152 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L LL+ E+G R ++ D ++E LW++ + FLPHG D QPVL Sbjct: 21 LPTLLEKTLERGWRALIKSAHAHRLDDVDERLWSFHDESFLPHGRADQPHAD---RQPVL 77 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L+ S N N + F+VD+A + G + +E+ I + D+ +L++ R W++LK G Sbjct: 78 LSESGENLNGAQALFIVDDAEL--GVTEGFERCFIIFDGRDEPALQYARGRWKTLKEQG 134 >gi|315500010|ref|YP_004088813.1| DNA polymerase iii chi subunit holc [Asticcacaulis excentricus CB 48] gi|315418022|gb|ADU14662.1| DNA polymerase III chi subunit HolC [Asticcacaulis excentricus CB 48] Length = 149 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 5/113 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 LL+ +KG + V + + L+++LW ++ + FLPHG++ E ++ QPVLL Sbjct: 21 LLEKTLQKGWKAYVLGEAGDMLVGLDQHLWAYRDEAFLPHGLESEPE---AARQPVLLGD 77 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 S NAN + + F V ++M++ ++ Y++ + + D+ L W RA W++LK Sbjct: 78 SGGNANAADVLFSV--SAMNLPELSPYQRCLILFEGQDETHLNWARAQWKALK 128 >gi|149201831|ref|ZP_01878805.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035] gi|149144879|gb|EDM32908.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035] Length = 152 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 6/139 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58 M + FY + E L +LL+ G RV V+ G E R L+E LW +DGFLP Sbjct: 1 MGAVYFYHLTRQPLEATLPMLLEKSLGAGWRVVVR-GREAARLVWLDERLWLGPEDGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HGV G + QPVLLT N + +D A + +V ++V + + +D Sbjct: 60 HGVA---GGAHDADQPVLLTTDHARPNGAACVMAIDGADVSGEEVQSLQRVCILFDGNDD 116 Query: 119 GSLEWGRAHWRSLKNSGYA 137 +++ R W++L +G A Sbjct: 117 AAVQVARGQWKALTGAGCA 135 >gi|86138695|ref|ZP_01057268.1| DNA polymerase III subunit chi [Roseobacter sp. MED193] gi|85824755|gb|EAQ44957.1| DNA polymerase III subunit chi [Roseobacter sp. MED193] Length = 152 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58 M + FY + + L VLLQ G R++V+ G + R S L+E LW D FL Sbjct: 1 MGSAYFYHLTQRPLQETLPVLLQKARGAGWRIAVR-GQQADRMSWLDEVLWQGSADSFLA 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ G + QP+LLT + +AN VD A + +V E+V + + +++ Sbjct: 60 HGLA---GGPHDALQPILLTTTQDSANQPECLMTVDGAEVTAAEVQALERVCILFDGNNE 116 Query: 119 GSLEWGRAHWRSLKNSG 135 +L+ R+ W+SL +G Sbjct: 117 TALQQARSQWKSLTGAG 133 >gi|84500992|ref|ZP_00999227.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597] gi|84391059|gb|EAQ03477.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597] Length = 154 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E L LL G R++V+ S D L++ LW D FLPHGV + G + Q Sbjct: 15 ERTLPSLLGKALGAGWRIAVRGRSRDRLDWLDQKLWLGPDDDFLPHGV---EGGAHDALQ 71 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 P+LLT + AN +D A + DV ++V + + +D +LE RA WR++ Sbjct: 72 PILLTTGT-AANDPACLMAIDGAEVAASDVSGMQRVCILFDGNDTEALEMARAQWRTITA 130 Query: 134 SG 135 +G Sbjct: 131 AG 132 >gi|119383655|ref|YP_914711.1| DNA polymerase III subunit chi [Paracoccus denitrificans PD1222] gi|119373422|gb|ABL69015.1| DNA polymerase III chi subunit, HolC [Paracoccus denitrificans PD1222] Length = 149 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 1 MRTLLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRD-SLNEYLWTWKKDGFLP 58 M + LFY LL +L+ + G RV ++ G +R R +L+E LW ++GFLP Sbjct: 1 MGSALFYHLTRSGPAQLLPMLIGKSLQAGWRVELR-GRDRARQVALDEALWL--REGFLP 57 Query: 59 HGVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 HG+ G + QPVLLT+ AN + +D A + + E+ I + +D Sbjct: 58 HGL---AGGPHDARQPVLLTVEGQAAANAARCLIALDGAEVSGAECLALERACLIFDGND 114 Query: 118 QGSLEWGRAHWRSLKNSGYAPD 139 +LE RA WR+LK A + Sbjct: 115 PEALERARAQWRALKAEDVAAE 136 >gi|304392002|ref|ZP_07373944.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130] gi|303296231|gb|EFL90589.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130] Length = 151 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%) Query: 31 VSVQCGSERVRDSLNEYLWTWKKDGFLPH---GVDVGDEGDFSSFQPVLLTISSLNANTS 87 V +Q G E RD L+E LWT+ + FLPH G G+ GD P+ LT N + Sbjct: 32 VVIQAGQEAARDELDELLWTYNDESFLPHWREGNGPGEGGD----NPIWLTTGDERPNNA 87 Query: 88 TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 +RF+V A + + YE+V+ + + D ++ R+ W+ LK +G+ Sbjct: 88 AVRFVV--AGATVSKPEDYERVITMFDGYDDNAVAQARSQWKELKAAGH 134 >gi|319407070|emb|CBI80707.1| putative DNA polymerase III chi subunit [Bartonella sp. 1-1C] Length = 149 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY K+ + L VL++ ++ R+++QC ++ + ++ LW + + F+ H Sbjct: 1 MVDIFFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + QPV LT N N S +RFL+D A D++ Y++VV + + + Sbjct: 61 GTEY---DRYPELQPVFLTTGQENPNDSKVRFLIDGAV--CSDINIYQRVVIMFDGHNDM 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L R W+ K Y Sbjct: 116 QLNLIREQWKDYKTKNY 132 >gi|89070354|ref|ZP_01157661.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus HTCC2516] gi|89044001|gb|EAR50176.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus HTCC2516] Length = 151 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY D E L +LL+ G R V+ S + L+E LW +DGFLPH Sbjct: 1 MGAAYFYHLTRDPLERTLPMLLEKARTVGWRCEVRATSRALLARLDEQLWLHPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + N + V+ A + +V E+ + + D G Sbjct: 61 GL---AGGPHDADQPVLLT-DTRGTNNAACLLAVEGAEVSAEEVQALERTCILFDGADPG 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +++ R W L ++G A Sbjct: 117 AVQIARGQWARLTDAGCA 134 >gi|197105166|ref|YP_002130543.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1] gi|196478586|gb|ACG78114.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1] Length = 148 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L LL+ ++G + V+ + L+ +LW+++ D FLPH Sbjct: 1 MTEVWFYHLERTGLDQALPELLEKTLQRGWKAIVRTPVPERVEHLDGWLWSYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G ++ QP+LLT+ N N + FLVD A GD+ Y++ V + + D Sbjct: 61 -APAGEPG--AARQPILLTMDFENPNGADALFLVDGA--EPGDLAGYQRCVVLFDGADPA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L R+ W +K G++ Sbjct: 116 QLSLARSQWSQVKAKGFS 133 >gi|110680304|ref|YP_683311.1| DNA polymerase III subunit chi [Roseobacter denitrificans OCh 114] gi|109456420|gb|ABG32625.1| DNA polymerase III, chi subunit, putative [Roseobacter denitrificans OCh 114] Length = 155 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +FY + E L++LL G RV V+ L+E LW D FLPH Sbjct: 1 MGKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LL+ +S N +T VD A + +V ++V + + +D Sbjct: 61 GL---AGGAHDARQPILLSTTSDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQ 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R W +LK +G A + Sbjct: 118 ALDVARGQWSALKKAGAAAE 137 >gi|260576759|ref|ZP_05844744.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2] gi|259021011|gb|EEW24322.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2] Length = 155 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSL-NEYLWTWKKDGFLP 58 M +LFY ++ E LL + G RV ++ G++ R +L +E LW ++GFLP Sbjct: 1 MVLVLFYHLTRSPVEATAAGLLSRALDLGWRVMLR-GTDPARLALLDERLWLGPEEGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ G + + QPVLL ++ N + LVD A G+ + E+V + + +D Sbjct: 60 HGLQGGPQ---DADQPVLLGTGAIG-NAAHALMLVDGAEPLTGEAEALERVWVLFDGNDP 115 Query: 119 GSLEWGRAHWRSLKNSG 135 +LE RA W++L G Sbjct: 116 AALETARAQWKTLTAQG 132 >gi|159043741|ref|YP_001532535.1| DNA polymerase III subunit chi [Dinoroseobacter shibae DFL 12] gi|157911501|gb|ABV92934.1| DNA polymerase III chi subunit HolC [Dinoroseobacter shibae DFL 12] Length = 151 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L VLL+ G RV V+ S + L+E LW ++GFLPH Sbjct: 1 MGAVYFYHMTRTPLDATLPVLLEKSLAAGWRVLVRGTSGAELERLDELLWLRPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ GD + QPVLL + + A + VD A + +V + + + D Sbjct: 61 GIAGGDR---DADQPVLLGVDAPLAGREAL-ICVDGAQVDPAEVAGLARASLLFDGGDAA 116 Query: 120 SLEWGRAHWRSLKNSG 135 ++E R WR++ +G Sbjct: 117 AVEAARGQWRAVTGAG 132 >gi|77463455|ref|YP_352959.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides 2.4.1] gi|77387873|gb|ABA79058.1| putative DNA polymerase III chi subunit [Rhodobacter sphaeroides 2.4.1] Length = 152 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58 M ++FY ++ E L +LL +G RV ++ G++RVR ++L+ LW ++GFLP Sbjct: 1 MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRVRLEALDLALWRVPEEGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ + G + QPVLL ++ N + L+D A + E+V + + D+ Sbjct: 60 HGM---EGGPHDAVQPVLLGTGAIG-NGAQALMLLDGAETQAAEAAPLERVWILFDGLDE 115 Query: 119 GSLEWGRAHWRSLKNSG 135 L R W++L +G Sbjct: 116 AELARARGQWKALTGAG 132 >gi|83953616|ref|ZP_00962337.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1] gi|83841561|gb|EAP80730.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1] Length = 152 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPV 75 L +LL G RV+V+ + + + L+ LW +DGFLPHG+ G + QPV Sbjct: 17 TLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDGFLPHGLA---GGPHDAEQPV 73 Query: 76 LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 LLT + N ++ F + A++ +V ++V + + D +L R W+SLK +G Sbjct: 74 LLTTDTHAPNNASCVFSIHGAAVSAQEVAALDRVCILFDGLDDHALNVARDQWKSLKAAG 133 >gi|254477359|ref|ZP_05090745.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11] gi|214031602|gb|EEB72437.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11] Length = 154 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + L VLL+ G R+ V+ + L++ LW +D FLPH Sbjct: 1 MGAVYFYHLTRRPLAETLPVLLEKAMGAGWRIVVRGQDQERITWLDDRLWQGPEDRFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 GV G QPVLLT A + VD A + +V E+V + + DQ Sbjct: 61 GVAGGPR---DHLQPVLLTTQPELAEGTHCLMAVDGADVTPAEVASLERVCILFDGTDQA 117 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W++L ++G A Sbjct: 118 AVARARTQWKTLTDAGCA 135 >gi|99080792|ref|YP_612946.1| DNA polymerase III subunit chi [Ruegeria sp. TM1040] gi|99037072|gb|ABF63684.1| DNA polymerase III chi subunit HolC [Ruegeria sp. TM1040] Length = 154 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + + L VLL G R++V+ L++ LW FLPH Sbjct: 1 MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLAGDASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LLT +S AN + VD A + +VD E+V + + D Sbjct: 61 GIA---GGPHDALQPILLTTASEAANGADCVMSVDGAEVQPDEVDALERVCILFDGTDPE 117 Query: 120 SLEWGRAHWRSLKNSG 135 +++ R W++L +G Sbjct: 118 AVQHARGQWKNLTAAG 133 >gi|312114900|ref|YP_004012496.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC 17100] gi|311220029|gb|ADP71397.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC 17100] Length = 158 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L VL++ +G R S++ S D+++ LWT+++D FLPHG D QPV Sbjct: 27 LPVLVEKTLARGWRASLRFSSAERLDAIDTALWTYREDSFLPHGTARDGHAD---RQPVF 83 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 LT+ N N + + FL++ A + + + +V+ + + D + R WR K +G Sbjct: 84 LTLEEANPNNAEVLFLLEGARE--SEPERFVRVIRLFDDPDDEAKAIAREEWRGAKAAG 140 >gi|329850481|ref|ZP_08265326.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis biprosthecum C19] gi|328840796|gb|EGF90367.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis biprosthecum C19] Length = 149 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L LL+ +KG R V + +LN+ LW+++ D FL H Sbjct: 1 MPDIWFYHLETTPLDQALPDLLEKVAQKGWRAYVHGHEDDKISALNDRLWSYRPDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + GD D QPVLL S AN + V + + DV E+ + + + +D Sbjct: 61 GRE-GD--DLEGHQPVLLGTSGRMANKPQVYLSV--SPTDLPDVSGLERCLIVFDGNDAE 115 Query: 120 SLEWGRAHWRSLKNSG 135 L W R W+ LK +G Sbjct: 116 HLTWARGQWKQLKATG 131 >gi|295689674|ref|YP_003593367.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756] gi|295431577|gb|ADG10749.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756] Length = 154 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 6/132 (4%) Query: 6 FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY ++ E L LL+ +G + V+ G + ++L++ LWT+++D FLPHG+ Sbjct: 11 FYHLERSPLEAVLPELLEKTLGRGWKALVRGGDLKRIEALDQQLWTYREDSFLPHGL--- 67 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124 + QPVLLT N N FL+D A GD+ + + + + D +L Sbjct: 68 ASEPMAERQPVLLTAEEGNPNHGDAIFLIDGAD--PGDLSGVSRCILLFDGRDDQALAEA 125 Query: 125 RAHWRSLKNSGY 136 R W K +G+ Sbjct: 126 RGRWSVFKKAGH 137 >gi|163735793|ref|ZP_02143222.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149] gi|161390879|gb|EDQ15219.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149] Length = 151 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Query: 5 LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 +FY + E L++LL G RV V+ L+E LW D FLPHG+ Sbjct: 1 MFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPHGL-- 58 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 G + QP+LL+ + N +T VD A + +V ++V + + +D +L+ Sbjct: 59 -AGGAHDARQPILLSTTPDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDPQALDI 117 Query: 124 GRAHWRSLKNSGYA 137 R W +LK +G A Sbjct: 118 ARGQWSTLKKAGAA 131 >gi|83945298|ref|ZP_00957647.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633] gi|83851468|gb|EAP89324.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633] Length = 149 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 8/122 (6%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58 M L FY +N + L LL E+G R +V C E R D L+ +LWT++++ FLP Sbjct: 1 MAELWFYHLENASVDEALPELLTKLMERGGR-AVVCSQEETRLDHLDSHLWTFREESFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG + + QP++L+ + N N++++ F +D A GDV +++VV + D+ Sbjct: 60 HG---RADAEHVEHQPIVLSDRTDNPNSASMLFCLDGAD--PGDVSAWDRVVVMFEASDE 114 Query: 119 GS 120 S Sbjct: 115 TS 116 >gi|300022387|ref|YP_003754998.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans ATCC 51888] gi|299524208|gb|ADJ22677.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans ATCC 51888] Length = 148 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 6 FYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-VDV 63 FY ++ E L LL+ +G R VQ GSE D+L+ LWT+ + FL HG + Sbjct: 5 FYHLEHQTLERVLPSLLEKTLARGWRAVVQAGSEERLDALDLALWTYDDESFLAHGTARI 64 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 G ++ QPV LT+ N N + +RF VD A + E+ V++ + D +L Sbjct: 65 GH----ANLQPVYLTLGHENPNGAGVRFFVDGAEA--DKFEGAERFVYVFDGHDPEALTS 118 Query: 124 GRAHW 128 R W Sbjct: 119 ARGQW 123 >gi|144900065|emb|CAM76929.1| DNA polymerase III chi subunit, HolC [Magnetospirillum gryphiswaldense MSR-1] Length = 151 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L LL+ + G RV V GS + LN LWT+ ++ +LPHG E ++ QP+ Sbjct: 18 LPKLLEKAVQAGLRVVVMAGSSERVEHLNAILWTFSEESWLPHGSASDGE---AALQPIW 74 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 LT N NT+T+ L D A +D +++ + + + +D+ ++ R W++ K G+ Sbjct: 75 LTEREENPNTATVLVLCDGA--RPTSLDGWDRCLDLFDGNDENAVLAARERWKTWKAEGH 132 >gi|83312772|ref|YP_423036.1| DNA polymerase III subunit chi [Magnetospirillum magneticum AMB-1] gi|82947613|dbj|BAE52477.1| DNA polymerase III, chi subunit [Magnetospirillum magneticum AMB-1] Length = 151 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL G R V GS ++LN+ LWT++ + +LPH Sbjct: 1 MTQIGFYHLMRLPLEQALPKLLDKALAAGFRAVVLAGSPERVEALNDRLWTYEPESWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G E + QP+ LT S N N +TI + D AS V Y++ + + + +D Sbjct: 61 GSARDGEPE---MQPIWLTHSDENPNGATILVMCDGASSE--KVGAYQRGLDLFDGNDPD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 ++E R W+ K+ G+ Sbjct: 116 AVEKARERWKRWKSEGH 132 >gi|310816135|ref|YP_003964099.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25] gi|308754870|gb|ADO42799.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25] Length = 152 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 6 FYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD 65 F F L VLL E+G RV ++ +L+ LW DGFLPHG+ Sbjct: 7 FQLFDGPVAATLPVLLNRSLERGWRVILRGTDPARMAALDVDLWRRDDDGFLPHGL---A 63 Query: 66 EGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGR 125 G + QPVLLT + + VD A+ + E+VV I + D +L+ R Sbjct: 64 GGPHDALQPVLLTTGDGLPDGDCL-ICVDMATATPAECASLERVVLIFDGHDPQALDHAR 122 Query: 126 AHWRSLKNSG 135 W++L G Sbjct: 123 GEWKALTGQG 132 >gi|83952303|ref|ZP_00961035.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM] gi|83837309|gb|EAP76606.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM] Length = 151 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L +LL G RV V+ D L++ LW + FLPH Sbjct: 1 MGAAYFYHLTRQPLEATLPMLLTKAMGAGWRVVVRGVEPGRMDWLDQKLWQ-GGESFLPH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + AN VD A + +V E+V + + +D Sbjct: 60 GLA---GGAHDALQPVLLTTAMEAANDPQCLMAVDGAEVSAEEVQRLERVCVLFDGNDMA 116 Query: 120 SLEWGRAHWRSLKNSG 135 +L+ R W++L +G Sbjct: 117 ALDRARGQWKALTEAG 132 >gi|84684879|ref|ZP_01012779.1| DNA polymerase III subunit chi [Maritimibacter alkaliphilus HTCC2654] gi|84667214|gb|EAQ13684.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2654] Length = 149 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 5 LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 ++ + E L VLL E+G RV V+ SE L+E LW DGFLPHG+ G Sbjct: 6 FYHMTRTPLEDTLPVLLGRAREQGWRVVVRGRSEARLRWLDEKLWM--GDGFLPHGISGG 63 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124 D QP+LLT + A+ +D A + +V +V+ + + +D G++E Sbjct: 64 PHDD---DQPILLTTGTATADCV---VSMDGAEVAPDEVGEAARVMILFDGNDDGAVERA 117 Query: 125 RAHWRSLKNS 134 R WR++ + Sbjct: 118 REQWRTMTGA 127 >gi|288958789|ref|YP_003449130.1| DNA polymerase III subunit chi [Azospirillum sp. B510] gi|288911097|dbj|BAI72586.1| DNA polymerase III subunit chi [Azospirillum sp. B510] Length = 149 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 8/139 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +L+ E+ R V GS D LN++LWT+ FLPH Sbjct: 1 MTEVRFYHLQRRTMEQALPKILEKVLERNWRAVVLAGSPERVDMLNQHLWTYDPGSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQ 118 G F+ QPV LT + N N +T+ VD + D +D Y V + + +D Sbjct: 61 G---AARDGFAERQPVWLTDADENPNGATVLVTVDGC---VSDRMDGYALVCDLFDGNDD 114 Query: 119 GSLEWGRAHWRSLKNSGYA 137 ++ R W++ K +G++ Sbjct: 115 EAVLAARQRWKACKAAGHS 133 >gi|83593535|ref|YP_427287.1| DNA polymerase III subunit chi [Rhodospirillum rubrum ATCC 11170] gi|83576449|gb|ABC23000.1| DNA polymerase III, chi subunit [Rhodospirillum rubrum ATCC 11170] Length = 160 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKG-KRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + + L L KG +R V GS D LN LWT+ +LPH Sbjct: 1 MSRFDFYHLQRSTLEDALPRLLARVRKGDQRAVVMAGSPERVDGLNSLLWTFDAGSWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G +GD + QPV LTI N N + + L D + D + +++ + + D Sbjct: 61 G--TARDGDGAD-QPVWLTIDEENPNGAEVLVLTD--GVWPSDPARFARILLLFDGGDDS 115 Query: 120 SLEWGRAHWRSLKNSGY 136 ++ R HW++++ +G+ Sbjct: 116 AVARARGHWKAMRENGH 132 >gi|163746446|ref|ZP_02153804.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45] gi|161380331|gb|EDQ04742.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45] Length = 152 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPV 75 L +LL+ G RV+++ +L+ LWT+ +D FLPH + GD + QPV Sbjct: 17 TLTMLLEKSLANGWRVALRGTDPEGLQALDRALWTFSEDSFLPHAIAGGDR---DADQPV 73 Query: 76 LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 LLT+ N + V A + ++ ++V + + D +L+ R W+ LK+ G Sbjct: 74 LLTLEDGAPNRADCLMAVHGAHVTAQEIAALQRVCVLFDGHDPMALDQARGLWKRLKSEG 133 >gi|259419117|ref|ZP_05743034.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B] gi|259345339|gb|EEW57193.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B] Length = 154 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + + L VLL G R++V+ L++ LW FLPH Sbjct: 1 MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLGGDATFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G QP+LLT S+ N +T VD A + +V E+V + + D Sbjct: 61 GLA---GGPHDKLQPILLTTSADAPNDATCVMSVDGAEVTPEEVSALERVCILFDGTDPD 117 Query: 120 SLEWGRAHWRSLKNSGYA 137 +++ R W++L +G A Sbjct: 118 AVQQARGQWKALTAAGCA 135 >gi|114569779|ref|YP_756459.1| DNA polymerase III subunit chi [Maricaulis maris MCS10] gi|114340241|gb|ABI65521.1| DNA polymerase III, chi subunit [Maricaulis maris MCS10] Length = 150 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPV 75 L LL+ +G R V+ + R+++++ LWTW++D FLPHG V+ G QPV Sbjct: 19 LPELLEKTLARGWRALVRSPDAKRREAIDQLLWTWREDSFLPHGQVEAGS----PERQPV 74 Query: 76 LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L+ N N + FL+D A +++++ + + D+ ++ RA W+ G Sbjct: 75 LIAEDEANPNGAHCLFLLDGAEPE--KPSSFDRMIVMFDGQDEMAVTDARALWKKASAEG 132 >gi|83942396|ref|ZP_00954857.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36] gi|83846489|gb|EAP84365.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36] Length = 152 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPV 75 L +LL G RV+V+ + + + L+ LW +D FLPHG+ G + QPV Sbjct: 17 TLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDSFLPHGLA---GGPHDAEQPV 73 Query: 76 LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 LLT + N + F + A++ +V ++V + + D +L R W+SLK +G Sbjct: 74 LLTTDTHAPNNVSCVFSIHGAAVSAQEVAALDRVCILFDGLDDHALNVARDQWKSLKAAG 133 >gi|332558332|ref|ZP_08412654.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N] gi|332276044|gb|EGJ21359.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N] Length = 152 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58 M ++FY ++ E L +LL +G RV ++ G++RVR ++L+ LW +DGFLP Sbjct: 1 MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRVRLEALDLALWRVPEDGFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ + G + QPVLL ++ N + L+D A+ + E+V + + D+ Sbjct: 60 HGM---EGGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDE 115 Query: 119 GSLEWGRAHWRSLKNSG 135 L R W++L +G Sbjct: 116 AELGRARGQWKALTGAG 132 >gi|126739397|ref|ZP_01755090.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6] gi|126719497|gb|EBA16206.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6] Length = 152 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + L+VLL+ G ++V+ L++ LW D FL H Sbjct: 1 MGAAYFYHLTRKPMPETLMVLLEKARGAGWAIAVRGQDPDRMTWLDDALWLGSDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LLT ++ AN VD A + +V E+V + + +D Sbjct: 61 GLA---GGPHDALQPILLTATAQAANDPKCLMSVDGAGVEAEEVQALERVCILFDGNDMQ 117 Query: 120 SLEWGRAHWRSLKNSG 135 +++ R W++L +G Sbjct: 118 AVQRAREQWKALTGAG 133 >gi|23016368|ref|ZP_00056125.1| COG2927: DNA polymerase III, chi subunit [Magnetospirillum magnetotacticum MS-1] Length = 151 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 7/124 (5%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E L LL G R V GS+ + LN LWT++ D +LPHG E + Q Sbjct: 15 EQALPKLLDKALAAGFRAVVLAGSQERVEDLNGRLWTYEPDSWLPHGSARDGEAE---MQ 71 Query: 74 PVLLTISSLNANTSTIRFLVD-EASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 P+ LT + N N +TI + D AS +G +++ + + + +D ++E R W+ K Sbjct: 72 PIWLTHTDENPNGATILVMCDGSASERVG---AFQRCLDLFDGNDAEAVEKARERWKRWK 128 Query: 133 NSGY 136 G+ Sbjct: 129 AEGH 132 >gi|163739702|ref|ZP_02147110.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107] gi|161386932|gb|EDQ11293.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107] Length = 154 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58 M FY + E L VLL G R+ V+ G + R + L+E LW +D FLP Sbjct: 1 MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVR-GVDLPRITRLDERLWLGAEDQFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ VG G + QPVLL+ + ++ VD A + +V E+V + + + Sbjct: 60 HGL-VG--GPHDALQPVLLSHETTPVPGTSCLMAVDGAEVTAEEVTALERVCILFDGTNP 116 Query: 119 GSLEWGRAHWRSLKNSG 135 ++ R W+SL ++G Sbjct: 117 DAVARARVQWKSLTDAG 133 >gi|163743165|ref|ZP_02150547.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10] gi|161383582|gb|EDQ07969.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10] Length = 154 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58 M FY + E L VLL G R+ V+ G + R + L+E LW +D FLP Sbjct: 1 MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVR-GVDLPRITRLDERLWLGAEDQFLP 59 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ VG G + QPVLL+ + ++ VD A + +V E+V + + + Sbjct: 60 HGL-VG--GPHDALQPVLLSHETTPVPGTSCLMTVDGAEVTAEEVTALERVCILFDGTNP 116 Query: 119 GSLEWGRAHWRSLKNSGYA 137 ++ R W+SL ++G + Sbjct: 117 DAVARARVQWKSLTDAGCS 135 >gi|146277170|ref|YP_001167329.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17025] gi|145555411|gb|ABP70024.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC 17025] Length = 158 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 6/110 (5%) Query: 27 KGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G RV ++ G++R R ++L+ LW +DGFLPHG++ G + + QPVLL ++ N Sbjct: 24 QGWRVMLR-GTDRGRLEALDLALWRVPEDGFLPHGMEGGPQ---DAAQPVLLGTGAIG-N 78 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + L+D A + E+V + + D+G L R W++L +G Sbjct: 79 GAQALMLLDGAETDAAEAGPLERVWILFDGLDEGQLVHARGQWKALTGAG 128 >gi|254465585|ref|ZP_05078996.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium Y4I] gi|206686493|gb|EDZ46975.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium Y4I] Length = 152 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL G R++V+ L++ LW ++ F H Sbjct: 1 MGAAYFYHLTRRPLEETLPVLLDKARGAGWRIAVRGRDPERMAWLDDRLWQGPEESFPAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT AN+ VD A++ +V +V + + D Sbjct: 61 GLA---GGPHDALQPVLLTAGPEAANSPDCVMAVDGAAVTAEEVQALSRVCILFDGTDPE 117 Query: 120 SLEWGRAHWRSLKNSG 135 +++ R W+SL ++G Sbjct: 118 AVQHARTQWKSLTDAG 133 >gi|126462310|ref|YP_001043424.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17029] gi|126103974|gb|ABN76652.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC 17029] Length = 148 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 7/133 (5%) Query: 5 LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLPHGVD 62 +FY ++ E L +LL +G RV ++ G++R R ++L+ LW +DGFLPHG+ Sbjct: 1 MFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRARLEALDLALWRVPEDGFLPHGM- 58 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 + G + QPVLL I ++ N + L+D A+ + E+V + + D+ L Sbjct: 59 --EGGPHDAAQPVLLGIGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEVELA 115 Query: 123 WGRAHWRSLKNSG 135 R W++L +G Sbjct: 116 RARGQWKALTGAG 128 >gi|294678218|ref|YP_003578833.1| DNA polymerase III subunit chi [Rhodobacter capsulatus SB 1003] gi|294477038|gb|ADE86426.1| DNA polymerase III, chi subunit [Rhodobacter capsulatus SB 1003] Length = 150 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 4/137 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M L ++ ++ E + LL +G RV ++ S D L++ LW ++ FLPHG Sbjct: 1 MPALFYHVTQSPVEGVVETLLTRALAQGWRVELRGVSPERMDWLDQKLWLGPEEDFLPHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + G + QPVLLT S + L D A + +V E+V + + D+ + Sbjct: 61 L---AGGPHDALQPVLLTTSPRPEGRQAVMTL-DGAEVTPAEVAAAERVWILFDGRDETA 116 Query: 121 LEWGRAHWRSLKNSGYA 137 + R W++L +G A Sbjct: 117 VARARDQWKALTGAGTA 133 >gi|319944266|ref|ZP_08018542.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis ATCC 51599] gi|319742561|gb|EFV94972.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis ATCC 51599] Length = 146 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L++ ++ G +V V C R S + LW + F+PH V + PVLLT Sbjct: 20 LVRKAWQAGHKVVVYCEDTRRLASFDRLLWEFAPLSFIPH---VSVRHPLAERTPVLLTA 76 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 S + S + LV+ Y +VV ++ TD Q S + RA +RS + GY P Sbjct: 77 SDADVPASHRQVLVNLGERMPPAFADYARVVELVGTDAQ-SRQAARARFRSYREQGYTP 134 >gi|221639313|ref|YP_002525575.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides KD131] gi|221160094|gb|ACM01074.1| DNA polymerase III chi subunit [Rhodobacter sphaeroides KD131] Length = 162 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 7/135 (5%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLPHG 60 ++FY ++ E L +LL +G RV ++ G++R R ++L+ LW ++GFLPHG Sbjct: 13 VVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRARLEALDLALWRVPEEGFLPHG 71 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + G + QPVLL ++ N + L+D A+ + E+V + + D+ Sbjct: 72 M---EGGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEAE 127 Query: 121 LEWGRAHWRSLKNSG 135 L R W++L +G Sbjct: 128 LGRARGQWKALTGAG 142 >gi|189184262|ref|YP_001938047.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str. Ikeda] gi|189181033|dbj|BAG40813.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str. Ikeda] Length = 169 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 13/131 (9%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L LL+ Y ++ +++N LW++ F+PHG + E S QP+ Sbjct: 19 LCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCSIDPEP---SSQPIY 75 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDY---------YEKVVFIINTDDQGSLEWGRAH 127 +T + N N + I LV S + + DY +E+++ I +D +++ + Sbjct: 76 ITTNYENPNQAKILVLVI-LSYNCCNADYDNNISYFQQFERILIIFKENDNKLIDYMNNY 134 Query: 128 WRSLKNSGYAP 138 + LK GY P Sbjct: 135 YHRLKQDGYLP 145 >gi|182677642|ref|YP_001831788.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp. indica ATCC 9039] gi|182633525|gb|ACB94299.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp. indica ATCC 9039] Length = 156 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 8/132 (6%) Query: 6 FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY ++ E L LL+ E G R VQ SE L+++LW + FL HG Sbjct: 7 FYHLQRHPIERVLPKLLEKSLEHGWRAIVQARSEERLAVLDQWLWVYSDASFLAHGRAC- 65 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS----MHIGDVDYYEKVVFIINTDDQGS 120 +GD + QPV LT N N + +R ++ A M Y +++ + N D+ Sbjct: 66 -DGD-AVMQPVYLTTEMDNPNGARLRLFIEGADIVSLMQDPSSSLYARMIVLFNGHDEEE 123 Query: 121 LEWGRAHWRSLK 132 L R W+ LK Sbjct: 124 LTIARRQWQDLK 135 >gi|254486570|ref|ZP_05099775.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101] gi|214043439|gb|EEB84077.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101] Length = 153 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLW-TWKKDGFLPHGVDVGDEGDFSSFQP 74 L +LL G RV+V+ V ++ LW +DGFLPHG+ G + QP Sbjct: 17 TLTMLLGKAQGAGWRVAVRGTDAAVLAQMDAALWRQGPEDGFLPHGMA---GGPHDAAQP 73 Query: 75 VLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134 +LLT S+ N ++ F + A + +V ++V + + +D +L R W++LK + Sbjct: 74 ILLTTSADIPNGASCVFSIHGAEVSAAEVAALDRVCILFDGEDDIALNKARGQWKALKAA 133 Query: 135 G 135 G Sbjct: 134 G 134 >gi|296116650|ref|ZP_06835260.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC 23769] gi|295976862|gb|EFG83630.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC 23769] Length = 147 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 8/138 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY ++ E L LL + G+R V+CG + L++ LW +LPH Sbjct: 1 MAEVGFYHLTRSTLEQALPALLGRTLDAGRRAVVRCGDDARVKWLDDALWRATDPLWLPH 60 Query: 60 GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G +G E S+QP+ LT N +T FL+D S +E+V + + D+ Sbjct: 61 GTRALGHE----SWQPIWLTAGEDVPNGATFAFLIDGVS--CTQPGLFERVFDLFDGHDE 114 Query: 119 GSLEWGRAHWRSLKNSGY 136 ++ R W+ + +G+ Sbjct: 115 NAVAAARQRWKVCREAGH 132 >gi|117925960|ref|YP_866577.1| DNA polymerase III subunit chi [Magnetococcus sp. MC-1] gi|117609716|gb|ABK45171.1| DNA polymerase III, chi subunit [Magnetococcus sp. MC-1] Length = 157 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 6 FYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY+ D E LL +L Y G RV + + L+E+LW D FLPH V Sbjct: 13 FYQLATDSRERALLKILNKVYGMGLRVCIVVEDRQQAQGLDEHLWRHPPDSFLPHATSV- 71 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 F QP+L++ ++ N +T+ ++ + + ++D ++ VV + D Q Sbjct: 72 --DPFPEAQPILISEQPVDPNGATVVVML--TPVPLENLDQFDTVVDFVPDDPQA 122 >gi|74316597|ref|YP_314337.1| DNA polymerase III subunit chi [Thiobacillus denitrificans ATCC 25259] gi|74056092|gb|AAZ96532.1| putative DNA polymerase III chi subunit [Thiobacillus denitrificans ATCC 25259] Length = 143 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M ++FY F D + Y +GK+V + V +++ LWT GF+PH Sbjct: 1 MTEIIFYTFAEDRLDVARRVAAKAYGQGKQVMIYAPDAAVAGAVDRMLWTTPALGFVPHA 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIR---FLVDEASMHIGDVDYYEKVVFIINTDD 117 D ++ PVL + A+ +R +++ S +E++V I+ TDD Sbjct: 61 R---DSDALAAETPVL-----IGADAGALRHADVMINLDSAQPPAFGRFERLVEIVGTDD 112 Query: 118 QGSLEWGRAHWRSLKNSGYA 137 E GRA +R ++ GYA Sbjct: 113 -AEREQGRARYRFYQSRGYA 131 >gi|255264162|ref|ZP_05343504.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62] gi|255106497|gb|EET49171.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62] Length = 152 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 23/145 (15%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-----LNEYLWTWKKD 54 M FY E L +L+ G RV V R RD+ L+E LW Sbjct: 1 MGAAYFYHLTAAPLEQTLPMLIGKAQGAGWRVVV-----RGRDAARIVWLDEKLWAGDPT 55 Query: 55 GFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI----RFLVDEASMHIGDVDYYEKVV 110 FLPHG+ GD + QPVL L A+T T+ VD A + G+V E+V Sbjct: 56 SFLPHGI---AGGDHDADQPVL-----LRADTQTVIDGCLMAVDGAEVTAGEVAACERVC 107 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135 + + D +L R W++L ++G Sbjct: 108 ILFDGLDGNALARAREQWKALTDAG 132 >gi|126736389|ref|ZP_01752131.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2] gi|126714210|gb|EBA11079.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2] Length = 164 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +L+ G RV V+ E + L++ LW +DGF PH Sbjct: 13 MGAVFFYHLTDSPLEATLPMLIGKARGAGWRVLVRGRDEALLRLLDDVLWQGPEDGFQPH 72 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LL + ++ V A + +V+ E+ + D Sbjct: 73 GM---AGGPHDADQPILL--GDVPSDGFGCVMSVAGADVTADEVNALERACILFAGHDDA 127 Query: 120 SLEWGRAHWRSLKNSGYA 137 +LE R W++L ++G A Sbjct: 128 ALEHARGQWKTLTDAGCA 145 >gi|258541817|ref|YP_003187250.1| DNA polymerase III subunit chi [Acetobacter pasteurianus IFO 3283-01] gi|256632895|dbj|BAH98870.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-01] gi|256635952|dbj|BAI01921.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-03] gi|256639007|dbj|BAI04969.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-07] gi|256642061|dbj|BAI08016.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-22] gi|256645116|dbj|BAI11064.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-26] gi|256648171|dbj|BAI14112.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-32] gi|256651224|dbj|BAI17158.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654215|dbj|BAI20142.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-12] Length = 148 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L LL G++ +V C S+ + D L++ LW +LPHG + D QP+ Sbjct: 18 LPKLLARTLASGQKAAVWCASKPMLDDLDKALWKVTTPTWLPHGREGIACPD---LQPIW 74 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 L++ N + FL++ S D+ +E+V + + D+ ++ R W + K +G+ Sbjct: 75 LSMGEDTPNNARFLFLLENRS--FPDLAAFERVFDLFDGHDEEAVAAARTRWSAAKAAGH 132 >gi|114798143|ref|YP_760967.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC 15444] gi|114738317|gb|ABI76442.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC 15444] Length = 156 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 6 FYRF-KNDWEYNLLVLLQDEYEKGKRV-SVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 FY ++ E LLQ E G RV +V +ER+ L+ LWT+ FLPHG Sbjct: 10 FYHLSRSALEEAAAPLLQKCLEVGWRVLAVSPRAERLA-KLDAVLWTFDDASFLPHGQAD 68 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVD--EASMHIGDVDYYEKVVFIINTDDQGSL 121 D + QPVLL+ NAN++ L+D EA + + +++ + + D G+ Sbjct: 69 APGLDVAR-QPVLLSAKLTNANSADALMLMDGVEAPVDVA----FKRCMVMFEDADTGTR 123 Query: 122 EWGRAHWRSLKNSG 135 RA +++ K++G Sbjct: 124 NKARAQFKAAKDAG 137 >gi|95929634|ref|ZP_01312376.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans DSM 684] gi|95134331|gb|EAT15988.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans DSM 684] Length = 139 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 7/135 (5%) Query: 6 FYRFKNDWEYNLLVLLQDEY-EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 F + + L LL +E+ + KRV + + +L+ ++WTW K FLPH V Sbjct: 7 FIKLNKPEKAKCLCLLAEEFFAQSKRVLILVEDDNQALTLDRFMWTWNKGSFLPH---VW 63 Query: 65 DEGDFSSF-QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 D G + + + LN+N +++ L+ + + ++ V+ T DQ +E Sbjct: 64 DNGAVECHEEAIAIGTRELNSNGASV--LIAARPCSVEFMRQFKHVIEFAETYDQALVEA 121 Query: 124 GRAHWRSLKNSGYAP 138 R +R+ + G P Sbjct: 122 ARGRFRAWRECGCEP 136 >gi|254460669|ref|ZP_05074085.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium HTCC2083] gi|206677258|gb|EDZ41745.1| DNA polymerase III chi subunit, HolC [Rhodobacteraceae bacterium HTCC2083] Length = 153 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +LL G R V + + D+L+ LW FL H Sbjct: 1 MGAVYFYHLTRKPLEATLPLLLSKARSAGWRCLVVGRNPQRLDALDTQLWQGAGTDFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + + QP+LL + + N + +D A + V Y + + + +++ Sbjct: 61 GRAGGVQ---DAAQPILLADTQTDINDAECAMCIDGADVTPDQVKTYARTCILFDGNNEQ 117 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W++L ++G A Sbjct: 118 EVQTARIQWKTLTDAGCA 135 >gi|254294284|ref|YP_003060307.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814] gi|254042815|gb|ACT59610.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814] Length = 169 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 6 FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY + E L LL+ +K RV + +R+ L+ LWTWK D FLPH G Sbjct: 20 FYHLERTSLEEALGPLLEKCLQKDWRVLIVGDGDRL-PKLDLGLWTWKADSFLPHARLGG 78 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM--HIGDVDYYEKVVFIINTDDQGSLE 122 + QP+LL+ + AN + I L+D + D Y + + + + DD + + Sbjct: 79 RDEIDPMAQPILLSNTPEPANKADIIVLLDGKRLPNEPDDATQYIRCMVVFDGDDFNARD 138 Query: 123 WGRAHWRSLKNSG 135 R+ ++ K++G Sbjct: 139 TARSQFKGAKDAG 151 >gi|289209276|ref|YP_003461342.1| DNA polymerase III subunit chi [Thioalkalivibrio sp. K90mix] gi|288944907|gb|ADC72606.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. K90mix] Length = 139 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G RV + GS + +L+E+LWT++ FLPH DV + V +++ +A + Sbjct: 31 QGHRVHIHTGSPELTRTLDEWLWTFEDTTFLPHSTDVRNTD-------VPVSLHEAHAPS 83 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 L++ A+ +E+V I+ ++ E GRA +R K GY Sbjct: 84 DRCDVLINLAADVPEYCGRFERVADIVG-GEESEREAGRARYRYFKERGYP 133 >gi|148284078|ref|YP_001248168.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str. Boryong] gi|146739517|emb|CAM79223.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str. Boryong] Length = 146 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 11/109 (10%) Query: 38 ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97 ++ +++N LW++ F+PHG E S QP+ +T + N N + I LV +S Sbjct: 18 KKTEEAINNTLWSFSSTSFIPHGCSTDPEP---SSQPIYITTNYENPNQAKILVLVILSS 74 Query: 98 --------MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 +I +E+++ I +D +++ ++ LK GY P Sbjct: 75 NCCNANYDNNISYFQQFERILIIFKENDNKLIDYMNNYYHRLKQDGYLP 123 >gi|329114406|ref|ZP_08243168.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001] gi|326696482|gb|EGE48161.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001] Length = 148 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L LL G++ +V C S+ + D L++ LW +LPHG + D QP+ Sbjct: 18 LPKLLARTLASGQKAAVWCASKPMLDDLDKTLWKVTTPTWLPHGREGIACPD---LQPIW 74 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 L++ N + FL++ S D+ +E+V + + D+ ++ R W + K +G+ Sbjct: 75 LSMGEDAPNAARFLFLLENRS--FPDLADFERVFDLFDGHDEEAVAAARTRWSAAKAAGH 132 >gi|114328867|ref|YP_746024.1| DNA polymerase III subunit chi [Granulibacter bethesdensis CGDNIH1] gi|114317041|gb|ABI63101.1| DNA polymerase III, chi subunit [Granulibacter bethesdensis CGDNIH1] Length = 149 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL G+R V CG +L+ LW +LPH Sbjct: 1 MTEIGFYHLTRTGPEQALPQLLGRTLAAGERAMVLCGGPERVAALDTTLWLCPNPDWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNA-NTSTIRFLVD-EASMHIGDVDYYEKVVFIINTDD 117 G GD ++ QP+ LT A N + FL+D AS + D Y +V + + + Sbjct: 61 G--TARSGD-AALQPIWLTAQDEAAPNGAHFLFLIDGTASERLHD---YTRVFDLFDGSN 114 Query: 118 QGSLEWGRAHWRSLKNSGY 136 + ++ R W+ KN+G+ Sbjct: 115 EDAVAAARLRWKQAKNAGH 133 >gi|308050964|ref|YP_003914530.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799] gi|307633154|gb|ADN77456.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799] Length = 153 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLN 83 Y KG+RV V C S+ ++L+E LW ++ D F+PH V G +G PV + + N Sbjct: 33 YRKGQRVFVHCASQADAEALDEQLWQFEPDSFIPHNLVGEGPQGG----APVEIGWAMPN 88 Query: 84 ANTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGR--AHWRSL 131 A R L+ + + + ++ + D+Q + + AH+R L Sbjct: 89 AALPVNRALLINLAPEVPKFAVQFAHIIDFVPADEQAKAQARKRFAHYRQL 139 >gi|124267130|ref|YP_001021134.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1] gi|124259905|gb|ABM94899.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1] Length = 144 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 1/136 (0%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + LL Y++G RV+V S L+ LWT+ F+PH Sbjct: 1 MTEINFHHGAADPLAHACRLLTKAYQRGARVAVTASSSERLAQLDVMLWTYDPLAFVPHA 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 P + + A+ LV+ + +E++ I+ DD+ Sbjct: 61 RLRAGAAPAERLAPTPIWLLDRAADAPHHEVLVNLGPEVPAGFESFERLFEIVGKDDE-E 119 Query: 121 LEWGRAHWRSLKNSGY 136 GR WR ++ GY Sbjct: 120 RRAGRQRWRYFESRGY 135 >gi|270159213|ref|ZP_06187869.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968] gi|289165962|ref|YP_003456100.1| DNA polymerase III, chi subunit [Legionella longbeachae NSW150] gi|269987552|gb|EEZ93807.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968] gi|288859135|emb|CBJ13064.1| putative DNA polymerase III, chi subunit [Legionella longbeachae NSW150] Length = 144 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 28/127 (22%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD-----------EGD 68 LL+ Y KG +V V C +++ + L+E LWT+K+D F+PH + E + Sbjct: 26 LLEKAYVKGHKVYVLCANKQDAEFLDELLWTFKEDSFIPHHLQGEGPEPPPPIQIGYERE 85 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 F +LL +S+ N + +F K + I + + E RAH+ Sbjct: 86 PRGFNDILLNLSN-NIPSFYSKF----------------KRIMEIVLNSEAEKEQSRAHY 128 Query: 129 RSLKNSG 135 RS K +G Sbjct: 129 RSYKANG 135 >gi|302341449|ref|YP_003805978.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM 2075] gi|301638062|gb|ADK83384.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM 2075] Length = 145 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG-DEGDFSSFQPVLLTISSLN 83 + +G RV + R L+ LWT+ F+PH + G D+ D +PVL++ N Sbjct: 27 WRQGARVLILAADPRQAAGLDALLWTFDPASFVPHALAGGADQAD----EPVLISQEPAN 82 Query: 84 ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 N +++ + + +++V+ +I +D L R +R ++ G P Sbjct: 83 LNHASVLIMTKPPASPQAVPPGFQRVIVLIPLEDGPDLHACRDCFRLARDQGLNP 137 >gi|288940946|ref|YP_003443186.1| DNA polymerase III subunit chi HolC [Allochromatium vinosum DSM 180] gi|288896318|gb|ADC62154.1| DNA polymerase III chi subunit HolC [Allochromatium vinosum DSM 180] Length = 143 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 66/138 (47%), Gaps = 10/138 (7%) Query: 6 FYRFKNDWEYNLLVLLQDEYEKGK----RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY + D + +L E+ + RV + C L+ LWT +++ FLPHG+ Sbjct: 6 FYSLEPDSRGDRFILACRLVERIRAQDLRVLILCPDREEARHLDRLLWTMRQESFLPHGL 65 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + D + P+L+++ + + + L++ + ++ +E++ +++ +D Sbjct: 66 VGTVDTDLT---PILISLDGASEHGCPV--LLNLSRALPAGLERFERLCDLVD-NDPAVR 119 Query: 122 EWGRAHWRSLKNSGYAPD 139 + GR +R+ + GY PD Sbjct: 120 QAGRERFRAYRERGYEPD 137 >gi|163792840|ref|ZP_02186816.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199] gi|159181486|gb|EDP65998.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199] Length = 149 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E L LL+ + G+R V GS+ +LN LWT++ +LPHG + F Q Sbjct: 15 ERALPKLLERTLDTGQRAVVLAGSDERVQALNGLLWTYEDRSWLPHG---SSKDGFDEDQ 71 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 P+ L+ N N + FL D + I D+ + +V + + D ++ R W++ ++ Sbjct: 72 PIWLSAVEGNPNGAAFLFLTD--GVTIDDLTAWSRVFDLFDGRDDAAVAAARTRWKAARD 129 Query: 134 SGYA 137 G++ Sbjct: 130 GGHS 133 >gi|311694205|gb|ADP97078.1| DNA polymerase III chi subunit, HolC [marine bacterium HP15] Length = 170 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ +++G RV V C + + + L++ LW + D F+PH V V D S +L Sbjct: 49 LVDKAWQQGDRVCVVCDTMQHAEELDDLLWNFSPDAFIPHSV-VPDSATTCSDPVGILLC 107 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 + T+ L ++ D D ++++ + + +D L R+H++ L+ G P Sbjct: 108 PPAPEDWDTVIIL---SATLPADADRFKRLALVAH-NDPNVLNQARSHFKQLRALGIEP 162 >gi|92115037|ref|YP_574965.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens DSM 3043] gi|91798127|gb|ABE60266.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens DSM 3043] Length = 150 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 16/123 (13%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + KG R+ + E + L+E LWT+K + +LPH V +GD D S PV L Sbjct: 24 LAETIHRKGYRLHIHTEDETMARELDERLWTFKPESYLPHAV-LGD--DVSPEPPVTLGW 80 Query: 80 SSLNANTSTIRFLVDEASMHIGD-----VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134 + A EA +++ +E+V IIN Q L RA W++ K Sbjct: 81 EAPPAPGV-------EAMLNLHPEIPEWFSRFERVAEIIN-QHQDVLTAKRACWQTYKKR 132 Query: 135 GYA 137 GY Sbjct: 133 GYP 135 >gi|148358633|ref|YP_001249840.1| DNA polymerase III subunit chi [Legionella pneumophila str. Corby] gi|148280406|gb|ABQ54494.1| DNA polymerase III, chi subunit [Legionella pneumophila str. Corby] Length = 144 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68 L++ Y KG + V C +++ + L+E LWT+K D F+PH V +G + + Sbjct: 26 LIEKAYSKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 F +LL +S+ N RF K V + ++ + E R H+ Sbjct: 86 PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128 Query: 129 RSLKNSGYA 137 + +N G A Sbjct: 129 KEYRNKGCA 137 >gi|54295471|ref|YP_127886.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens] gi|53755303|emb|CAH16797.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens] Length = 144 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68 L++ Y KG + V C +++ + L+E LWT+K D F+PH V +G + + Sbjct: 26 LIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 F +LL +S+ N RF K V + ++ + E R H+ Sbjct: 86 PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128 Query: 129 RSLKNSGYA 137 + +N G A Sbjct: 129 KKYRNKGCA 137 >gi|307611509|emb|CBX01183.1| hypothetical protein LPW_28821 [Legionella pneumophila 130b] Length = 144 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68 L++ Y KG + V C +++ + L+E LWT+K D F+PH V +G + + Sbjct: 26 LIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 F +LL +S+ N RF K V + ++ + E R H+ Sbjct: 86 PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128 Query: 129 RSLKNSGYA 137 + +N G A Sbjct: 129 KEYRNKGCA 137 >gi|296108277|ref|YP_003619978.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99 Alcoy] gi|295650179|gb|ADG26026.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99 Alcoy] Length = 144 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68 L++ Y KG + V C +++ + L+E LWT+K D F+PH V +G + + Sbjct: 26 LIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 F +LL +S+ N RF K V + ++ + E R H+ Sbjct: 86 PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128 Query: 129 RSLKNSGYA 137 + +N G A Sbjct: 129 KEYRNKGCA 137 >gi|126667527|ref|ZP_01738497.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17] gi|126627953|gb|EAZ98580.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17] Length = 174 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ +++G RV + C + L++ LW + D F+PH V E + PV + + Sbjct: 55 LVNKAWQQGDRVGIVCDTLEHAQELDDLLWNFSPDAFIPHS--VISEANTPCKDPVGILL 112 Query: 80 SSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 A T+ L E H D ++++ I +D L+ R+H++ L+ G Sbjct: 113 HPPAAEDWDTVIILCTELPAH---ADQFKRLALIAQ-NDPVVLDQARSHFKQLRALG 165 >gi|77919148|ref|YP_356963.1| DNA polymerase III subunit chi [Pelobacter carbinolicus DSM 2380] gi|77545231|gb|ABA88793.1| DNA polymerase III, chi subunit [Pelobacter carbinolicus DSM 2380] Length = 138 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QP 74 +L L + + +G+RV V + +L+ ++WTWKK F+PH V D G +P Sbjct: 17 HLCELAEHFFTQGQRVLVMVCDDNQGVTLDRFMWTWKKGAFIPH---VYDNGAVDCLDEP 73 Query: 75 VLLTISSLNANTSTIRFLVDEASM 98 V++ + N N + + + S+ Sbjct: 74 VIIEVEERNPNNAGVLIMGKPCSL 97 >gi|225025636|ref|ZP_03714828.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC 23834] gi|224941586|gb|EEG22795.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC 23834] Length = 173 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 34/78 (43%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M T+ FY D E L + E G RV CG +L+ LW ++ + FLPH Sbjct: 27 MPTVTFYTHVADLETFACRLAKRAVEAGCRVLAWCGGTEQLATLDRQLWAFEAESFLPHE 86 Query: 61 VDVGDEGDFSSFQPVLLT 78 + + E P+LL Sbjct: 87 IWLPKENPCPIEPPILLA 104 >gi|149378266|ref|ZP_01895978.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893] gi|149357463|gb|EDM45973.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893] Length = 157 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ ++ RV V C + + L++ LW + D F+PH + V D + +L Sbjct: 36 LVDKARQQRDRVGVVCDTMQQAQELDDLLWNFSPDAFIPHSI-VPDSATTCTDPVGILLC 94 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 + + T+ L ++ D D ++++ + + +D+ L R+H++ L+ G P Sbjct: 95 QPVAEDWDTVIIL---SATLPADADRFKRLALVAH-NDEAVLGQARSHFKQLRALGIEPR 150 Query: 140 V 140 V Sbjct: 151 V 151 >gi|162149088|ref|YP_001603549.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus PAl 5] gi|209545169|ref|YP_002277398.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus PAl 5] gi|161787665|emb|CAP57261.1| putative DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] gi|209532846|gb|ACI52783.1| DNA polymerase III chi subunit HolC [Gluconacetobacter diazotrophicus PAl 5] Length = 148 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL + G+R ++CG +++E LW +LPH Sbjct: 1 MAEIGFYHLTRTPVEQALPALLGRTLDAGRRAVLRCGDAARVKAMDEALWQSADPVWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + QP+ LT N +T F +D + D +E+V + + D Sbjct: 61 GSAAMGHG---ALQPIWLTDGPDVPNGATYLFAID--GVVCPDAGTFERVFDLFDGSDAD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 ++ R W + + +G+ Sbjct: 116 AVAAARRRWVTCREAGH 132 >gi|52842838|ref|YP_096637.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629949|gb|AAU28690.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 144 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68 L++ Y KG + V C +++ + L+E LWT+K D F+PH V +G + + Sbjct: 26 LIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85 Query: 69 FSSFQPVLLTISS 81 F +LL +S+ Sbjct: 86 PRGFTDILLNLST 98 >gi|113868944|ref|YP_727433.1| DNA polymerase III subunit chi [Ralstonia eutropha H16] gi|113527720|emb|CAJ94065.1| DNA polymerase III chi subunit [Ralstonia eutropha H16] Length = 144 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L++ Y G++V + ++ D L+ LWT+ FLPH G E ++ P+LL Sbjct: 20 LVRKAYGAGQKVVIHGAPAQLAD-LDARLWTFSALDFLPH---CGLESPNAAVTPILLAA 75 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 ++ + L++ A +E+++ ++ D + E GR +R + GY Sbjct: 76 TT--EGVPHHQLLINLADQAPAQFASFERLIEVVGAGD-AAREAGRQRYRFYRERGY 129 >gi|294084198|ref|YP_003550956.1| DNA polymerase III subunit chi [Candidatus Puniceispirillum marinum IMCC1322] gi|292663771|gb|ADE38872.1| DNA polymerase III, chi subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 150 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + D E LL+LL+ GK+ + C + +L+ LWT + D + H Sbjct: 1 MSKIDFYHLTQTDMETVLLMLLKKTLAAGKKALILC-PQPAASALDTDLWTREPDSWFAH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+D D D + + T ++N + FL+ + ++ +E+V + + + Sbjct: 60 GLDDADGQDIAKIW--ISTDMAVNPIKAEFVFLLHGSVP--AEISQFERVFNLFDGRSEA 115 Query: 120 SLEWGRAHWRSLKNSG 135 ++ R W+S + G Sbjct: 116 QVQHARIQWKSWADLG 131 >gi|149186117|ref|ZP_01864431.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21] gi|148830148|gb|EDL48585.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21] Length = 146 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 9/127 (7%) Query: 6 FYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY+ ND + + L + + G+R+ V ER+R+ +++ LW FL +G Sbjct: 5 FYQLSNDPVDVTVAKLARKVLQAGERLVVVAADERLREHISKTLWEQGGGSFLANGP--- 61 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124 +G ++ QP+L+ + N + + L D D +++ + + + + + E Sbjct: 62 ADGPHAARQPILIAETCAAPNEARMAILAD--GQWREDASGFDRTMLLFDAE---ATEAA 116 Query: 125 RAHWRSL 131 R WR L Sbjct: 117 RGLWREL 123 >gi|54298621|ref|YP_124990.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris] gi|53752406|emb|CAH13838.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris] Length = 144 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68 L++ Y KG + V C +++ + L+E LWT+K D F+PH V +G + + Sbjct: 26 LIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85 Query: 69 FSSFQPVLLTISS 81 F +LL +S+ Sbjct: 86 PRGFTDILLNLST 98 >gi|194290550|ref|YP_002006457.1| DNA polymerase III subunit chi [Cupriavidus taiwanensis LMG 19424] gi|193224385|emb|CAQ70396.1| DNA POLYMERASE III, CHI SUBUNIT [Cupriavidus taiwanensis LMG 19424] Length = 144 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L++ Y G++V + ++ D L+ LWT+ FLPH G E ++ P+LL Sbjct: 20 LVRKAYGAGQKVVIHGAPAQLAD-LDARLWTFSALDFLPH---CGLESPNAAVTPILLAA 75 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 ++ + L++ A +E+++ ++ D + E GR +R + GY Sbjct: 76 TT--EGVPHHQLLINLAEEAPAQFASFERLIEVVGAGD-AAREAGRQRYRFYRERGY 129 >gi|94500492|ref|ZP_01307023.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65] gi|94427282|gb|EAT12261.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65] Length = 142 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 7/117 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + +++G+++ V E+ L++ +W +K + FLPH + VG++ + + I Sbjct: 24 LAEKAFKEGRQIYVHAQDEQQAKQLDDLMWEYKPESFLPHQI-VGEQASQTQ-----VEI 77 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 + + L++ S +++V+ I+ D+ SL RAH++ ++ GY Sbjct: 78 GWQDHPSHHFDVLINLVSPQPSFFSRFDRVLEIV-IQDETSLAQSRAHYKFYRDRGY 133 >gi|167585750|ref|ZP_02378138.1| DNA polymerase III chi subunit HolC [Burkholderia ubonensis Bu] Length = 138 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH-GVDVGDEGDFSSFQPVLLT 78 LL+ Y+ G+ V V R+R +L+E LWT+ F+PH G+D D P++L Sbjct: 20 LLRKAYQAGQPVVVLAEPARLR-ALDERLWTFSPLDFIPHCGIDSQHAAD----TPIVLA 74 Query: 79 ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 A + L++ + +E+++ ++ ++ L GR +R ++ GYA Sbjct: 75 ADLDKAPHHQV--LLNLGAAVPAQFARFERLLEVVG-NEPAELAAGRERYRFYRDRGYA 130 >gi|146283388|ref|YP_001173541.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501] gi|145571593|gb|ABP80699.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501] gi|327481781|gb|AEA85091.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri DSM 4166] Length = 139 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 ++ G +V V+C E L+E LW+++ + F+PH ++ PV++ + Sbjct: 29 WQHGLQVFVRCSDEDQSTRLDELLWSFRAERFIPH-----EQYAEEVQAPVVIGLEQEPP 83 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + L++ A +D + +V+ I+N + Q L R ++R + GY P + Sbjct: 84 TAQGL--LINLAPTLSAHIDRFSRVIEIVNQEPQ-LLTACRENFRLYRRQGYDPQRV 137 >gi|120553892|ref|YP_958243.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8] gi|120323741|gb|ABM18056.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8] Length = 169 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ +++G RV V C +E L++ LW + + F+PH + S +LL Sbjct: 48 LVDKAWQQGDRVCVLCDTEEQALELDDLLWNFTPEAFIPHSIAKAATTPCSDPVGILLYP 107 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + + T+ L +S D D Y ++ + + +D L R H++ L++ G Sbjct: 108 PAA-VDWDTVIVL---SSALPEDADQYRRLALVAH-NDPAVLNQARGHYKQLRSLG 158 >gi|56552204|ref|YP_163043.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis ZM4] gi|56543778|gb|AAV89932.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis ZM4] Length = 148 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 45 NEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV 103 ++YLW ++ FLPHG V GDE + PVL++ + N ++ L D + + Sbjct: 47 DDYLWRYEDTSFLPHGRVGGGDEAE----HPVLISTAMEAVNQASYIALTD--GLWRAEA 100 Query: 104 DYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 +E+V + D+ +++ R WRSLKN Sbjct: 101 LNFERVFYFF---DEIAVQQARQAWRSLKN 127 >gi|241761722|ref|ZP_04759809.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374030|gb|EER63563.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 148 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 45 NEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV 103 ++YLW ++ FLPHG V GDE + PVL++ + N ++ L D + + Sbjct: 47 DDYLWRYEDTSFLPHGRVGGGDEAE----HPVLISTAMEAVNQASYIALTD--GLWRAEA 100 Query: 104 DYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 +E+V + D+ +++ R WRSLKN Sbjct: 101 LNFERVFYFF---DEIAVQQARQAWRSLKN 127 >gi|260752287|ref|YP_003225180.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551650|gb|ACV74596.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 148 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 45 NEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV 103 ++YLW ++ FLPHG V GDE + PVL++ + N ++ L D + + Sbjct: 47 DDYLWRYEDTSFLPHGRVGGGDEAE----HPVLISTAMEAVNQASYIALTD--GLWRAEA 100 Query: 104 DYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 +E+V + D+ +++ R WRSLKN Sbjct: 101 LNFERVFYFF---DEIAVQQARQAWRSLKN 127 >gi|330504707|ref|YP_004381576.1| DNA polymerase III subunit chi [Pseudomonas mendocina NK-01] gi|328918993|gb|AEB59824.1| DNA polymerase III, chi subunit [Pseudomonas mendocina NK-01] Length = 139 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 8/114 (7%) Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTS 87 G V V+ E LNE LWT+K + F+PH D+ + S PV+L I A ++ Sbjct: 32 GLPVFVRGSDEAQCAELNELLWTFKAERFVPH--DLHQDAPLS---PVVLGID--EAPSA 84 Query: 88 TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 L++ S V+ + +++ I+N + L R ++R+ + GY P + Sbjct: 85 DQGVLINLGSSLSPHVERFSRIIEIVNQQPE-LLSACRENFRTYRQRGYDPQRV 137 >gi|114562095|ref|YP_749608.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina NCIMB 400] gi|114333388|gb|ABI70770.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina NCIMB 400] Length = 149 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + +Y + K V + C ++ +++E LW ++ + F+PH ++ EG + PV + Sbjct: 29 LAEQQYRQQKTVYIHCKDKQQAYAIDELLWQFEPNAFVPH--NLKGEGPVTG-APVEIGF 85 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 +L N S + M V+ + F+ N D+ + R +R +N G P Sbjct: 86 DTLGPNKSRQVLINLADQMPSFAVNLPHIIDFVANDDELKRI--ARNRYRQYQNVGITP 142 >gi|254495992|ref|ZP_05108898.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12] gi|254354780|gb|EET13409.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12] Length = 118 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 ++ Y +G RV V C ++ + L+E LWT+K+D F+PH + Sbjct: 1 MEKAYARGHRVYVFCNHQQDAELLDELLWTFKEDSFIPHNL 41 >gi|296535102|ref|ZP_06897348.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957] gi|296264571|gb|EFH10950.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957] Length = 153 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL G R V+ G SL+ LW + +LPH Sbjct: 1 MSEIGFYHLTRTPLEAALPKLLGRVLSLGGRAVVKLGDAARLASLDASLWLCQDPDWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEA-SMHIGDVDYYEKVVFIINTDDQ 118 G + + QP+ LT+ N + FL D A S +GD +E+V + + D+ Sbjct: 61 GSAASGQ---AELQPIWLTLQDEAPNGARYLFLADGAESAQLGD---FERVFDLFDGQDE 114 >gi|220935309|ref|YP_002514208.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7] gi|219996619|gb|ACL73221.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7] Length = 147 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ Y G R+ V GS + L++ LWT++ F+PH V+ G++ + PV + Sbjct: 24 LIGKAYGLGHRIHVHTGSRALSMQLDDLLWTFRDVSFIPHQVE-GEDAEC----PVQICH 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N I LV+ + +E+V I+N D + GR +R K+ GY Sbjct: 79 DQEPQNAGDI--LVNLDTQVPLFFSRFERVAEIVNQ-DPAIRDAGRERYRFYKDRGY 132 >gi|88810476|ref|ZP_01125733.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231] gi|88792106|gb|EAR23216.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231] Length = 144 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + Y +G RV + G + + +L+ LWT++ F+PH +G D +PV+L Sbjct: 27 LTEKAYRQGYRVFILTGDKALTQALDLQLWTFRAGSFVPHAT-LGQADD----EPVVLGE 81 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 + L H + ++V T SLE R +R +N G P Sbjct: 82 QPPRLAVDLLINLAAHCPNHWQRLSRIAEIV----TQQPESLELARERFRCYRNDGAQP 136 >gi|331007481|ref|ZP_08330652.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989] gi|330418705|gb|EGG93200.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989] Length = 144 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 L + G+ V ++ E DSL+EYLW++K + F+PH D + + V++ Sbjct: 24 LAEKALHTGRHVVIRVSDEAHADSLSEYLWSFKPEAFVPHCFSSSDPSSTGTTEKVVI 81 >gi|330993936|ref|ZP_08317866.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1] gi|329758882|gb|EGG75396.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1] Length = 148 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 29 KRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTST 88 +R ++C + ++E LW +LPHG G +QP+ LT N +T Sbjct: 30 RRAVIRCATAARAQEIDEGLWRATSPLWLPHGTQAMGHG---PWQPIWLTAGDDVPNGAT 86 Query: 89 IRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 F++D + + D+ +E+V + + D+ Sbjct: 87 FLFVLD--GVEVSDLSPFERVFEVFDGHDE 114 >gi|300113103|ref|YP_003759678.1| DNA polymerase III subunit HolC [Nitrosococcus watsonii C-113] gi|299539040|gb|ADJ27357.1| DNA polymerase III chi subunit HolC [Nitrosococcus watsonii C-113] Length = 143 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 6/116 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + Y G ++ +Q ++ ++E LWT+++ F+PH + +E D S PVL I Sbjct: 24 LTEKAYRLGHQIYIQTENQAQAQEMDELLWTFRQGSFVPHALINSEEADES---PVL--I 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + L++ + +++V II D+ GR +R ++ G Sbjct: 79 GYEREPEGKLELLINLCAEVPAFFSRFQRVAEIIGQDE-NHRHAGRQRYRYYRDHG 133 >gi|325982820|ref|YP_004295222.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212] gi|325532339|gb|ADZ27060.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212] Length = 159 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M +LFY N+ L ++ RV + + ++ D L++ LWT+ F+PH Sbjct: 14 MTQILFYSGSNNKLQTTCRLCAKAIQQHMRVLIYVPASKLLDQLDQLLWTFSSTSFIPH- 72 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 ++ D+ S PV+L+ + N+ + + + S H+ D +++++ I T + Sbjct: 73 CNILDDAKLVSATPVILS-GQIQVNSPFDVLINLHDQSPHL--FDQFDRLIEIAGTSHED 129 Query: 120 SLEWGRAHWRSLKNSGY 136 L R +R KN+GY Sbjct: 130 KLA-ARERYRFYKNAGY 145 >gi|254514077|ref|ZP_05126138.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3] gi|219676320|gb|EED32685.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3] Length = 142 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 L L + +++G RV + +E+ L+E LWT++ FLPH + D +S Q + Sbjct: 22 LRLTEKAHKRGHRVFINSENEQQARQLDELLWTFRPASFLPHALC----SDNASEQICIG 77 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + + L IG +++V ++N + LE R WR + GYA Sbjct: 78 WGQEPQGHDDLLINLQTRVPQFIG---RFQRVAELVNQEP-ARLEALRDSWRHYRERGYA 133 >gi|157826359|ref|YP_001494079.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford] gi|157800317|gb|ABV75571.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford] Length = 154 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 8/82 (9%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVD----EA 96 ++ LN++LWT+ + F+PHG + + + QP+ +T N N +++ ++ E Sbjct: 42 QEMLNKHLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLIIISPTAIEK 98 Query: 97 SMHIGD-VDYYEKVVFIINTDD 117 + I D V+ +++++ I ++ + Sbjct: 99 ILQIKDYVEVFKRIIIITDSPE 120 >gi|304321942|ref|YP_003855585.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503] gi|303300844|gb|ADM10443.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503] Length = 145 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L VLL+ + R V+ E ++ LWT+ D FLPH Sbjct: 1 MTEILFYHCERARPEAVLPVLLERSLARDWRAVVRLPDEAAVRYWDDALWTYADDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRF-LVDEASMHIGDVDYYEKVVFIINTD 116 G G ++ QP+ LT I F LV E G + E++V + + D Sbjct: 61 GA-----GPPAADQPIWLTADETLPPGRQILFSLVAEGVEKGG--EGLERIVLLFDED 111 >gi|71891826|ref|YP_277555.1| DNA polymerase III, chi subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795932|gb|AAZ40683.1| DNA polymerase III, chi subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 150 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ ++ GK + V C +E +++ LWT+ ++ F+PH + G P+++ Sbjct: 29 LISTQWRSGKTILVTCENEHQATKIDKILWTFDQNSFVPHNLF----GKTIQHAPIVIYW 84 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 S + L++ ++ + +++ + D +W R +RS K +G+ Sbjct: 85 SQCCYDNQPKDLLINLMLKNMNFFLNFNEIIDFVPISDILK-KWARYRYRSYKRNGFQVS 143 Query: 140 VI 141 V+ Sbjct: 144 VV 145 >gi|260221419|emb|CBA29963.1| hypothetical protein Csp_A14780 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 144 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 LL+ +G R++V +V+ L+ LW FL H VD G + PV+LT Sbjct: 20 LLRKAVARGARLTVLAPPAQVQ-YLDASLWATSPTDFLVHAVDDGQAP--HAMCPVVLT- 75 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 S ++ LV+ + D +E+V+ +++ DD R WR GY Sbjct: 76 SRVHGALKNHSVLVNLTTAVPADFVQFERVIEVVSVDDDDR-ALARNRWRHYVLQGY 131 >gi|119476405|ref|ZP_01616756.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2143] gi|119450269|gb|EAW31504.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2143] Length = 145 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + ++ G + + +L+E LW+W+ F+PH +D + QP+ + Sbjct: 24 LAEKAFKLGNEIYIHGSDGDQAKALDELLWSWRNTSFIPHKIDDNSTDE----QPLHIGF 79 Query: 80 SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 + L+ S H+ + +E+V I+ D E RA++R KN GY Sbjct: 80 GKDKQMSGDHNGLLINLSDHVPEFFSRFERVSEIV-VQDSAVTESTRANYRFYKNRGYHL 138 Query: 139 DV 140 D Sbjct: 139 DT 140 >gi|119503289|ref|ZP_01625373.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2080] gi|119460935|gb|EAW42026.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2080] Length = 139 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ + +G + + E ++L++ LWT++ F+PH + SS PV+L Sbjct: 24 LVDKAHRQGHTLFIHTTDEAEAEALDDLLWTFRPGSFIPHQL-----ASDSSEGPVVLGW 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 + + + L++ A +++V ++ T D SLE R+ WR K+ GY Sbjct: 79 GQEPSGHNDV--LINLALSQPAFFSRFQRVAEVV-TQDATSLEAMRSAWRFYKDRGY 132 >gi|226943295|ref|YP_002798368.1| DNA polymerase III subunit chi [Azotobacter vinelandii DJ] gi|226718222|gb|ACO77393.1| DNA polymerase III chi subunit, HolC [Azotobacter vinelandii DJ] Length = 142 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 26/42 (61%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 L + + G+R+ + C R++L+ LW++K + FLPHG+ Sbjct: 24 LTEKAWRLGRRIYLHCQDAPQRETLDARLWSFKSEAFLPHGL 65 >gi|114777970|ref|ZP_01452884.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1] gi|114551757|gb|EAU54309.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1] Length = 146 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Query: 33 VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFL 92 V C L+E LWT + FL H V G++ ++ QP+LL S + N + L Sbjct: 37 VLCPDPGFAAQLDERLWTIHPESFLAHAV-AGNDTAQNARQPILLATSIIRDNNPAV--L 93 Query: 93 VDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 ++ D+ + +V ++ D+G + R +R+ G P Sbjct: 94 INGGLEVPPDISGFAHLVDFVDGWDEGLKQAARERFRTYSQMGLDP 139 >gi|297621270|ref|YP_003709407.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU 86-1044] gi|297376571|gb|ADI38401.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU 86-1044] Length = 142 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 K KRV + SE L+++LW K+GFLPH V D +++T N N Sbjct: 33 KKKRVLITVPSETAATYLDDFLWKQPKEGFLPHSVSTQACSD-----EIVITTKQENLNQ 87 Query: 87 STI 89 + I Sbjct: 88 AEI 90 >gi|300725028|ref|YP_003714354.1| DNA polymerase III subunit chi [Xenorhabdus nematophila ATCC 19061] gi|297631571|emb|CBJ92280.1| DNA polymerase III, chi subunit [Xenorhabdus nematophila ATCC 19061] Length = 159 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E+ L D++ GKRV + C S++ + L+E LW + F+PH + G+ + + Sbjct: 32 EWMACQLAADQWRAGKRVLIACESQQQAEKLDEALWQREPSQFVPHNL-AGEGPRYGA-- 88 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGD--VDYYEKVVFIINTDDQGSLEWGRAHWRSL 131 PV L +N R ++ H D ++E + F+ D+ + R ++S Sbjct: 89 PVELCWPQKRSNAP--RDVLVTLLPHFADFATAFHEVIDFV--PIDENLKQLARERYKSY 144 Query: 132 KNSGY 136 ++ G+ Sbjct: 145 RSVGF 149 >gi|89900901|ref|YP_523372.1| DNA polymerase III subunit chi [Rhodoferax ferrireducens T118] gi|89345638|gb|ABD69841.1| DNA polymerase III chi subunit, HolC [Rhodoferax ferrireducens T118] Length = 144 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 LL+ G ++ V GS V L+ LWT+ F+PH + E + PV+L+ Sbjct: 20 LLRKAAASGAKLVV-IGSPDVLQQLDRALWTFSAVDFVPHCF-LESESHVVAASPVILST 77 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 S+ + L++ + + +E+V+ ++ +D+ + R+ W+S + GY Sbjct: 78 STHAVPHQQV--LLNLGQLVPEGFERFERVIEVVGQEDEDR-QSARSRWKSYADRGY 131 >gi|120611820|ref|YP_971498.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1] gi|120590284|gb|ABM33724.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1] Length = 144 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 3/105 (2%) Query: 33 VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFL 92 V G V D+++ LW F+ H DE D PVLL A + + L Sbjct: 32 VITGPSAVLDAVDRALWALGPQDFVAH-CRQEDEADLREASPVLLATDPRAATHAQV--L 88 Query: 93 VDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 ++ + + ++V ++++ D+ R WR GYA Sbjct: 89 LNLGPTVPAGFERFGRLVEVVSSTDESDRAGARERWRHYAQRGYA 133 >gi|88703590|ref|ZP_01101306.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis KT71] gi|88702304|gb|EAQ99407.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis KT71] Length = 142 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF----Q 73 L L + +++G RV + +E L+E LWT++ FLPH + D + + Sbjct: 22 LRLTEKAHKQGHRVFINSENEAQARELDELLWTFRPASFLPHALCSDDSSEQICIGWGQE 81 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 P +N S F + +++V ++N + LE R WR + Sbjct: 82 PAGHDDLLINLQLSVPDF-----------IGRFQRVAELVN-QEPARLEALRHSWRHYRE 129 Query: 134 SGYA 137 GYA Sbjct: 130 RGYA 133 >gi|103487245|ref|YP_616806.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis RB2256] gi|98977322|gb|ABF53473.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis RB2256] Length = 149 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 13/135 (9%) Query: 1 MRTLLFYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FYR D E L L G R+ V + R ++ LWT FLPH Sbjct: 1 MPRVDFYRLTRDPVERVLPALAARVLGNGDRLLVVAAAAMQRQDIDAALWTANPASFLPH 60 Query: 60 G-VDVGDEGDFSSFQPVLL--TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 G DE + +P+LL T+ + N ++ L D D +++ F+ Sbjct: 61 GHAGTPDE----AIEPILLSGTLDTSPPNGASRLALADGEWRE--DALAFDRTFFLF--- 111 Query: 117 DQGSLEWGRAHWRSL 131 D ++ RA WR+L Sbjct: 112 DNSRIDDARATWRAL 126 >gi|261855976|ref|YP_003263259.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus c2] gi|261836445|gb|ACX96212.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus c2] Length = 147 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%) Query: 31 VSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR 90 V V C + +S ++YLW +K D F+PH D D + P+ L + + Sbjct: 35 VYVVCANLAHVESFDDYLWGYKPDAFVPHTADPED----IAHAPIFLGVDVAAGGFDYVI 90 Query: 91 FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 L + + D +++V + + E RA WR + +G P Sbjct: 91 NLSGKPIERVADRIQLDELV----DANPANREAARARWRDYQAAGVKP 134 >gi|91206236|ref|YP_538591.1| DNA polymerase III subunit chi [Rickettsia bellii RML369-C] gi|157827852|ref|YP_001496916.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389] gi|91069780|gb|ABE05502.1| DNA polymerase III chi subunit HolC [Rickettsia bellii RML369-C] gi|157803156|gb|ABV79879.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389] Length = 153 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 Y K V + +E+ ++ LN+ LWT+ + F+PHG V + + QP+ +T + N Sbjct: 27 YSDLKSVVLTVDTEQ-QEMLNKNLWTYSRKQFIPHGSKVDPQPE---KQPIYITDTLQNP 82 Query: 85 NTSTIRFLVDEASMH 99 N +++ ++ ++ Sbjct: 83 NNASVLIIISPTNIE 97 >gi|255020896|ref|ZP_05292952.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC 51756] gi|254969687|gb|EET27193.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC 51756] Length = 143 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 16/111 (14%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 +V++ C E + +S+++ LWT++ F PHG D +PV L + + S + Sbjct: 36 QVNILCRDEELAESMDDLLWTYQAGAFTPHGRD--------PQEPVCLYAGT---DASVL 84 Query: 90 RFLVDEASMHI----GDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 R A + + G++ +++ I D+ G + R +R L+ +GY Sbjct: 85 RPAPALALVGLRELPGNLPDAARLLDFIPPDESGVAD-ARQRYRILREAGY 134 >gi|292493014|ref|YP_003528453.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4] gi|291581609|gb|ADE16066.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4] Length = 143 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 6/116 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + Y G R+ +Q + +++ LWT+++ F+PH + +E +S PVL+ Sbjct: 24 LTEKAYRLGHRIYIQVEDQEQAQKMDDLLWTFRQGSFVPHALMNTEE---ASETPVLIGY 80 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 S + L++ + ++ +V II+ D+ + GR +R ++ G Sbjct: 81 G--GEPESEMDLLINLCAEVPRFFSHFPRVAEIIDQDE-NNRHAGRQRYRDYRDQG 133 >gi|167032000|ref|YP_001667231.1| DNA polymerase III subunit chi [Pseudomonas putida GB-1] gi|166858488|gb|ABY96895.1| DNA-directed DNA polymerase [Pseudomonas putida GB-1] Length = 142 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 10/119 (8%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G RV + C R L++ LW +K + F+PH D + Sbjct: 24 LCEKAWRLGHRVYLHCQDTEQRSELDQRLWRFKGEAFVPH--------DLAEVHADADVA 75 Query: 80 SSLNANTSTIR-FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 L N R L++ + G V +E+V I+ ++ G + R +R + GYA Sbjct: 76 LGLADNAGEHRDLLINLGASVPGFVGQFERVAEIV-VEEPGIRQSARERFRFYREQGYA 133 >gi|85710394|ref|ZP_01041458.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1] gi|85687572|gb|EAQ27577.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1] Length = 138 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 19/123 (15%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 + ++ Q + G+R+ V + + R++++ LW + + FL +G D QP+L Sbjct: 17 VALIAQRVLDSGERLLVVSKNSQQREAISRTLWKAEPESFLANGEASAAGAD---RQPIL 73 Query: 77 LTISSLNANTSTIRFLVDEASMHI--GDVDYYEKVVF---IINTDDQGSLEWGRAHWRSL 131 L+ S AN A+ H+ D +Y E F + DD+ ++E R W+SL Sbjct: 74 LSASCEAAN----------AASHVIFADGEYREPTGFERAFLLFDDE-TVEAARGTWKSL 122 Query: 132 KNS 134 ++S Sbjct: 123 ESS 125 >gi|116748664|ref|YP_845351.1| DNA polymerase III subunit chi [Syntrophobacter fumaroxidans MPOB] gi|116697728|gb|ABK16916.1| DNA polymerase III chi subunit [Syntrophobacter fumaroxidans MPOB] Length = 152 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 5/135 (3%) Query: 4 LLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 +LF + LL +++ YE G++V V S +++ LWT+ F+PH Sbjct: 6 ILFVETVAAEQRKLLCNIVEHFYEAGRKVQVVADSTLGAQHIDQMLWTFSDRSFVPH--R 63 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 + D G + +PV++T+ + +V +A + + +E V + DD Sbjct: 64 ILDPGRGTPLEPVVITVGERILDGFDT--VVCDAECRLDFMTAFETAVHFVIRDDVDRRL 121 Query: 123 WGRAHWRSLKNSGYA 137 R W ++ A Sbjct: 122 QSRRMWTEARDRALA 136 >gi|152980235|ref|YP_001352359.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille] gi|151280312|gb|ABR88722.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille] Length = 141 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 23/131 (17%) Query: 8 RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG 67 R + + +++L QD + + L+E LWT+ + FLPH V + Sbjct: 22 RKARNANFQIVILAQDRAQLAQ--------------LDEKLWTFSEQDFLPH---VMLDD 64 Query: 68 DFSSFQPVLLTISSL--NANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGR 125 ++ P+LLT S + +T + L D + H +E++ +I+T+D GR Sbjct: 65 ALAAQTPILLTADSAMESPHTQILINLSDTSPTHFA---RFERMFEVISTED-ADKSAGR 120 Query: 126 AHWRSLKNSGY 136 + K GY Sbjct: 121 DRYSFYKQRGY 131 >gi|152989277|ref|YP_001346666.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PA7] gi|218889884|ref|YP_002438748.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa LESB58] gi|150964435|gb|ABR86460.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa PA7] gi|218770107|emb|CAW25869.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa LESB58] Length = 142 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + +G RV + C E R L+ LW+++ + F+PH + D + PV L + Sbjct: 24 LAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N + L++ G V + +V ++ ++ + R +R + GY Sbjct: 79 GEPPGNHRDL--LINLTLEAPGFVPNFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132 >gi|91794217|ref|YP_563868.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans OS217] gi|91716219|gb|ABE56145.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans OS217] Length = 153 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + Y + + + + C ++ +++E LW ++ F+PH ++ EG + PV + Sbjct: 33 LAERAYRQQQEIYIHCQDKQQAYAIDELLWQFEPTAFVPH--NLKGEGPMTG-APVEIGF 89 Query: 80 SSLNANTSTIRFLVDEA-SMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 L N S + L++ A M V+ + F+ N D+ + R+ +R +++G P Sbjct: 90 DKLGPNKSR-QLLINLADQMPAFAVNLPHIIDFVANDDELKRI--ARSRYRQYQSTGINP 146 >gi|319427209|gb|ADV55283.1| DNA polymerase III chi subunit HolC [Shewanella putrefaciens 200] Length = 170 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L Q Y K + V + C + + ++E LW ++ F+PH ++ EG + PV + Sbjct: 44 LAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPH--NLKGEGPITG-APVEIGF 100 Query: 80 SSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L AN S + L++ A V++ + + F+ N D ++ R +R ++ G Sbjct: 101 DRLGANKSR-QLLINIADQAPPFAVNFGQIIDFVANDDQHKAV--ARERYRQYRDLG 154 >gi|161617771|ref|YP_001591736.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161367135|gb|ABX70903.1| hypothetical protein SPAB_05634 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 174 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C E+ L+E LW Sbjct: 28 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 87 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 88 AESFVPHNL 96 >gi|290473521|ref|YP_003466391.1| DNA polymerase III subunit chi [Xenorhabdus bovienii SS-2004] gi|289172824|emb|CBJ79595.1| DNA polymerase III, chi subunit [Xenorhabdus bovienii SS-2004] Length = 154 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 25/42 (59%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 L D++ GKRV + C S++ + L+E LW + F+PH + Sbjct: 33 LAADQWRAGKRVLIACESQQQAEKLDEALWQREPSQFVPHNL 74 >gi|94497697|ref|ZP_01304265.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58] gi|94422914|gb|EAT07947.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58] Length = 145 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 10/135 (7%) Query: 6 FYRFKNDWEYNLLVLLQDE-YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 FY+ D +L + G R+ V G D +++ LW + FL HG G Sbjct: 5 FYQLSRDPVEQVLPAIAGRILAMGARLLVVAGEGDRLDRISQGLWAGPPESFLAHG-RTG 63 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124 + G+ ++QP+LL+ + N + L D + + +++ + + D +++ Sbjct: 64 EGGE--AYQPILLSDTCTAGNGARHIALAD--GLWREEALGFDRAFYFFDAD---TIDGA 116 Query: 125 RAHWRSL-KNSGYAP 138 RA WR+L K G P Sbjct: 117 RASWRTLSKAEGVEP 131 >gi|120598094|ref|YP_962668.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1] gi|146293835|ref|YP_001184259.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens CN-32] gi|120558187|gb|ABM24114.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1] gi|145565525|gb|ABP76460.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens CN-32] Length = 176 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L Q Y K + V + C + + ++E LW ++ F+PH ++ EG + PV + Sbjct: 50 LAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPH--NLKGEGPITG-APVEIGF 106 Query: 80 SSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L AN S + L++ A V++ + + F+ N D ++ R +R ++ G Sbjct: 107 DRLGANKSR-QLLINIADQAPPFAVNFGQIIDFVANDDQHKAV--ARERYRQYRDLG 160 >gi|194472838|ref|ZP_03078822.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358606|ref|ZP_02657873.2| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194459202|gb|EDX48041.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332907|gb|EDZ19671.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 160 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C +E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACENEKQAFRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|213025672|ref|ZP_03340119.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 103 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C E+ L+E LW Sbjct: 11 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 70 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 71 AESFVPHNL 79 >gi|16763277|ref|NP_458894.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144756|ref|NP_808098.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56416248|ref|YP_153323.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197262429|ref|ZP_03162503.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365171|ref|YP_002144808.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245468|ref|YP_002218340.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|25355624|pir||AD1061 DNA polymerase III, chi chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505585|emb|CAD06937.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29140395|gb|AAO71958.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130505|gb|AAV80011.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096648|emb|CAR62263.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240684|gb|EDY23304.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939984|gb|ACH77317.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326626148|gb|EGE32493.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 160 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|205360565|ref|ZP_02684454.2| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348910|gb|EDZ35541.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 160 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|116051860|ref|YP_789297.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa UCBPP-PA14] gi|313109251|ref|ZP_07795219.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa 39016] gi|115587081|gb|ABJ13096.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|310881721|gb|EFQ40315.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa 39016] Length = 142 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + +G RV + C E R L+ LW+++ + F+PH + D + PV L + Sbjct: 24 LAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N + L++ G V + +V ++ ++ + R +R + GY Sbjct: 79 GETPGNHRDL--LINLTLEAPGFVANFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132 >gi|194735547|ref|YP_002117397.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300603|ref|ZP_02659664.2| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|200387328|ref|ZP_03213940.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927029|ref|ZP_03218231.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224586300|ref|YP_002640099.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|194711049|gb|ACF90270.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291664|gb|EDY31014.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604426|gb|EDZ02971.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323694|gb|EDZ08889.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224470828|gb|ACN48658.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088908|emb|CBY98666.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 160 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|16423041|gb|AAL23295.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261249564|emb|CBG27431.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|323132813|gb|ADX20243.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332991285|gb|AEF10268.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 160 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|254251667|ref|ZP_04944985.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124894276|gb|EAY68156.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 138 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 LL+ Y+ G+ V V R+R +L+E LWT+ F+PH G + ++ P++LT Sbjct: 20 LLRKAYQAGQPVVVVAEPARLR-ALDERLWTFSPLDFIPH---CGVDSAHAASTPIVLT- 74 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + L+ + R L++ + +E+++ ++ +D L GR +R ++ GYA Sbjct: 75 ADLD-KSPHHRVLLNLGAAVPAQFARFERLLEVVG-NDPDELAAGRDRYRFYRDRGYA 130 >gi|39546402|ref|NP_463336.2| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62182902|ref|YP_219319.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167551268|ref|ZP_02345023.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991265|ref|ZP_02572364.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168244035|ref|ZP_02668967.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464642|ref|ZP_02698545.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821099|ref|ZP_02833099.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445428|ref|YP_002043716.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449358|ref|YP_002048500.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197247365|ref|YP_002149396.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|207859602|ref|YP_002246253.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161211|ref|ZP_03346921.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419117|ref|ZP_03352183.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427637|ref|ZP_03360387.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586776|ref|ZP_03368602.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650370|ref|ZP_03380423.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857513|ref|ZP_03384484.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910632|ref|ZP_04654469.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824524|ref|ZP_06544083.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|62130535|gb|AAX68238.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404091|gb|ACF64313.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407662|gb|ACF67881.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195632900|gb|EDX51354.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211068|gb|ACH48465.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205323926|gb|EDZ11765.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330399|gb|EDZ17163.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337015|gb|EDZ23779.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342292|gb|EDZ29056.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711405|emb|CAR35784.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267996820|gb|ACY91705.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160960|emb|CBW20494.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915573|dbj|BAJ39547.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222553|gb|EFX47625.1| DNA polymerase III chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615640|gb|EFY12560.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618700|gb|EFY15589.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621887|gb|EFY18737.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627612|gb|EFY24403.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630918|gb|EFY27682.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637863|gb|EFY34564.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642321|gb|EFY38927.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643904|gb|EFY40452.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651020|gb|EFY47405.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656727|gb|EFY53015.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659849|gb|EFY56092.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661940|gb|EFY58156.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666312|gb|EFY62490.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672731|gb|EFY68842.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676161|gb|EFY72232.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680645|gb|EFY76683.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684461|gb|EFY80465.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717405|gb|EFZ08976.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323194202|gb|EFZ79399.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197347|gb|EFZ82487.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201535|gb|EFZ86599.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206049|gb|EFZ91011.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213060|gb|EFZ97862.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215431|gb|EGA00175.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219415|gb|EGA03900.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227719|gb|EGA11873.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228889|gb|EGA13018.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236499|gb|EGA20575.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240000|gb|EGA24047.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241953|gb|EGA25982.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247898|gb|EGA31835.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251464|gb|EGA35335.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258170|gb|EGA41847.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263684|gb|EGA47205.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265720|gb|EGA49216.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270164|gb|EGA53612.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 147 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND N L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|332991783|gb|AEF01838.1| DNA polymerase III chi subunit [Alteromonas sp. SN2] Length = 141 Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust. Identities = 21/116 (18%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ D + +++SV C +++ + ++E+LW + F+PH ++ EG S + I Sbjct: 23 LIADAFANKQKISVLCDTQKQAEEVDEFLWQLPANRFVPH--NLYGEGPQSG---TPVEI 77 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + + +V+ S + + + +++ + DD+ + R +++ + +G Sbjct: 78 CWQPEQVARRQMVVNVGSGMVPSPNQHRQIIDFVPVDDEAK-QAARVRYKNYQQAG 132 >gi|254242523|ref|ZP_04935845.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192] gi|126195901|gb|EAZ59964.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192] Length = 142 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + +G RV + C E R L+ LW+++ + F+PH + D + PV L + Sbjct: 24 LAEKAWRQGMRVYLHCADEAQRRELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N + L++ G V + +V ++ ++ + R +R + GY Sbjct: 79 GETPGNHRDL--LINLTLEAPGFVANFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132 >gi|304410151|ref|ZP_07391770.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183] gi|307302138|ref|ZP_07581896.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175] gi|304351560|gb|EFM15959.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183] gi|306914176|gb|EFN44597.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175] Length = 165 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%) Query: 14 EYNLLV--LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS 71 E +LL L Q + K + V + C ++ +++E LW ++ F+PH ++ EG + Sbjct: 33 EMHLLACQLAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG 90 Query: 72 FQPVLLTISSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129 PV + L AN S + L D+A V++ + F+ N D ++ R +R Sbjct: 91 -SPVEIGFDRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYR 145 Query: 130 SLKNSG 135 + G Sbjct: 146 QYRGLG 151 >gi|153001633|ref|YP_001367314.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185] gi|151366251|gb|ABS09251.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185] Length = 174 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%) Query: 14 EYNLLV--LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS 71 E +LL L Q + K + V + C ++ +++E LW ++ F+PH ++ EG + Sbjct: 42 EMHLLACQLAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG 99 Query: 72 FQPVLLTISSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129 PV + L AN S + L D+A V++ + F+ N D ++ R +R Sbjct: 100 -SPVEIGFDRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYR 154 Query: 130 SLKNSG 135 + G Sbjct: 155 QYRGLG 160 >gi|33519517|ref|NP_878349.1| DNA polymerase III, chi subunit [Candidatus Blochmannia floridanus] gi|33517180|emb|CAD83562.1| DNA polymerase III, chi subunit [Candidatus Blochmannia floridanus] Length = 153 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 21/34 (61%) Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 GK + + C + +NE LW ++K+ FLPHG+ Sbjct: 38 GKTILITCDTHDQAKKINEALWNFEKNSFLPHGL 71 >gi|33151849|ref|NP_873202.1| DNA polymerase III subunit chi [Haemophilus ducreyi 35000HP] gi|33148070|gb|AAP95591.1| DNA polymerase III chi subunit [Haemophilus ducreyi 35000HP] Length = 153 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + GKRV + C +E+ +++E LW + D F+PH + G+F+ + + Sbjct: 35 LAAQAWRSGKRVLIACETEQQALNIDEALWAREPDSFVPHNL----AGEFTQYATPIEIC 90 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 N FL+ S+ DY II+ Sbjct: 91 WQNKRNAQRRDFLI---SLQTNLPDYINTFTQIID 122 >gi|315125731|ref|YP_004067734.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913] gi|315014245|gb|ADT67583.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913] Length = 148 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 24/38 (63%) Query: 24 EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 +Y G+RV + SE +S++E +WT+ D F+PH + Sbjct: 34 QYRLGQRVFIFVDSEETANSIDETIWTFDADSFVPHNL 71 >gi|170718967|ref|YP_001784132.1| DNA polymerase III subunit chi [Haemophilus somnus 2336] gi|168827096|gb|ACA32467.1| DNA-directed DNA polymerase [Haemophilus somnus 2336] Length = 147 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 7/110 (6%) Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QPVLLTISSLNANT 86 GK+V + C +E L+E LW D F+PH + G+ +S+ P+ ++ NT Sbjct: 37 GKKVLITCETEEQALKLDEALWQRDPDEFVPHNLS----GEMTSYVTPIEISWQG-KRNT 91 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 L++ S + + +++ + D+Q + R ++SL++ G+ Sbjct: 92 QRRDILINLQSQLPDFIMSFNQLIDFVPVDEQLKI-LARERYKSLRSQGW 140 >gi|134296644|ref|YP_001120379.1| DNA polymerase III subunit chi [Burkholderia vietnamiensis G4] gi|134139801|gb|ABO55544.1| DNA polymerase III chi subunit, HolC [Burkholderia vietnamiensis G4] Length = 138 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 LL+ Y+ G+ V V + R+R +L+E LWT+ F+PH + ++ P+LLT Sbjct: 20 LLRKAYQAGQPVVVLAEAARLR-ALDERLWTFSPLDFIPH---CSVDSPHAAATPILLT 74 >gi|315268559|gb|ADT95412.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS678] Length = 167 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L Q + K + V + C ++ +++E LW ++ F+PH ++ EG + PV + Sbjct: 43 LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 99 Query: 80 SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L AN S + L D+A V++ + F+ N D ++ R +R + G Sbjct: 100 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 153 >gi|84516311|ref|ZP_01003671.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis SKA53] gi|84510007|gb|EAQ06464.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis SKA53] Length = 156 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +LL +G RV V+ + L+ LW D FLPH Sbjct: 1 MGAVFFYELQGAPLETTLPMLLDKARGQGWRVLVRGTDPALLAQLDAALWQGPVDHFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LL L A V A++ + + + ++ + Sbjct: 61 GL---AGGPHDADQPILL--GDLPAAGFACVMAVGGAAVSAEEALLLARACILFDSAEHA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 + R W++L ++G A Sbjct: 116 KAQ-ARLQWKTLTDAGIA 132 >gi|113461407|ref|YP_719476.1| DNA polymerase III subunit chi [Haemophilus somnus 129PT] gi|112823450|gb|ABI25539.1| DNA polymerase III, chi subunit [Haemophilus somnus 129PT] Length = 147 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 7/110 (6%) Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QPVLLTISSLNANT 86 GK+V + C +E L+E LW D F+PH + G+ +S+ P+ ++ NT Sbjct: 37 GKKVLITCETEEQALKLDEALWQRDPDEFVPHNLS----GEMTSYVTPIEISWQG-KRNT 91 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 L++ S + + +++ + D+Q + R ++SL++ G+ Sbjct: 92 QRRDILINLQSQLPDFIMSFNQLIDFVPVDEQLKI-LARERYKSLRSQGW 140 >gi|126175312|ref|YP_001051461.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS155] gi|125998517|gb|ABN62592.1| DNA polymerase III chi subunit, HolC [Shewanella baltica OS155] Length = 174 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L Q + K + V + C ++ +++E LW ++ F+PH ++ EG + PV + Sbjct: 50 LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 106 Query: 80 SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L AN S + L D+A V++ + F+ N D ++ R +R + G Sbjct: 107 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 160 >gi|217972438|ref|YP_002357189.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223] gi|217497573|gb|ACK45766.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223] Length = 167 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L Q + K + V + C ++ +++E LW ++ F+PH ++ EG + PV + Sbjct: 43 LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 99 Query: 80 SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L AN S + L D+A V++ + F+ N D ++ R +R + G Sbjct: 100 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 153 >gi|160876369|ref|YP_001555685.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195] gi|160861891|gb|ABX50425.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195] Length = 174 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L Q + K + V + C ++ +++E LW ++ F+PH ++ EG + PV + Sbjct: 50 LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 106 Query: 80 SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L AN S + L D+A V++ + F+ N D ++ R +R + G Sbjct: 107 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 160 >gi|311281183|ref|YP_003943414.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1] gi|308750378|gb|ADO50130.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1] Length = 147 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV V C E+ L+E LWT Sbjct: 1 MKNATFYLLDNDNTVDGLSTVEQLVCEIAAERWRAGKRVLVACEDEQQAIRLDEALWTRP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|33593407|ref|NP_881051.1| hypothetical protein BP2422 [Bordetella pertussis Tohama I] gi|33597810|ref|NP_885453.1| hypothetical protein BPP3286 [Bordetella parapertussis 12822] gi|33602712|ref|NP_890272.1| hypothetical protein BB3737 [Bordetella bronchiseptica RB50] gi|33572763|emb|CAE42693.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|33574239|emb|CAE38571.1| conserved hypothetical protein [Bordetella parapertussis] gi|33577154|emb|CAE35711.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] gi|332382816|gb|AEE67663.1| hypothetical protein BPTD_2379 [Bordetella pertussis CS] Length = 151 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 10/120 (8%) Query: 24 EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLN 83 ++ G+R+ V C + + LW + F+PH V ++ PVLLT Sbjct: 24 RFQAGQRLVVYCADGGRLAAFDRMLWALEDVSFVPH---VLANDALAADTPVLLTAGDPA 80 Query: 84 ANTS------TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 A + + +L++ + D YE+++ I+ +DD + R WR +N+G+A Sbjct: 81 AALALATTGDSRPWLLNLDDGCPPNFDGYERLLEIV-SDDPADRQAARQRWRDYQNAGHA 139 >gi|283834894|ref|ZP_06354635.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220] gi|291069153|gb|EFE07262.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220] Length = 147 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + + L ++ + + GKRV + C +E+ L+E LW Sbjct: 1 MKNATFYLLDNDTQQDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|167856071|ref|ZP_02478814.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755] gi|219871803|ref|YP_002476178.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165] gi|167852820|gb|EDS24091.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755] gi|219692007|gb|ACL33230.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165] Length = 145 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 24/42 (57%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 L + +GKRV + C +E SL+E LW + D F+PH + Sbjct: 27 LAAKAWRQGKRVLIACETEEQAFSLDEALWAREADDFVPHNL 68 >gi|26987715|ref|NP_743140.1| DNA polymerase III subunit chi [Pseudomonas putida KT2440] gi|148546260|ref|YP_001266362.1| DNA polymerase III subunit chi [Pseudomonas putida F1] gi|24982403|gb|AAN66604.1|AE016288_3 DNA polymerase III, chi subunit [Pseudomonas putida KT2440] gi|148510318|gb|ABQ77178.1| DNA polymerase III, chi subunit [Pseudomonas putida F1] Length = 142 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 30/129 (23%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G RV + C R L++ LW +K + F+PH + Sbjct: 24 LCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAFVPH------------------DL 65 Query: 80 SSLNANTSTIRFLVDEASMH-----------IGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 + ++A+ + L D A H G V +E+V I+ ++ + R + Sbjct: 66 AEVHADADVVLGLADNAGEHHGLLINLGASVPGFVGQFERVAEIV-VEEPAIRQSARERF 124 Query: 129 RSLKNSGYA 137 R + GYA Sbjct: 125 RFYREQGYA 133 >gi|237729196|ref|ZP_04559677.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2] gi|226908925|gb|EEH94843.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2] Length = 147 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 MR FY ND E + + + + GKRV + C +E+ L+E LW Sbjct: 1 MRNATFYILDNDNTVDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|261342658|ref|ZP_05970516.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC 35316] gi|288315307|gb|EFC54245.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC 35316] Length = 147 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTQQDGLSAVEQLVCDIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|167580139|ref|ZP_02373013.1| DNA polymerase III subunit chi [Burkholderia thailandensis TXDOH] Length = 138 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 LL+ Y+ G+ V V R+R +L+E+LWT+ F+PH + ++ P++LT Sbjct: 20 LLRKAYQAGQPVVVCAEPARLR-ALDEHLWTFSPLDFIPH---CAVDNAHAASTPIVLT 74 >gi|283786941|ref|YP_003366806.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168] gi|282950395|emb|CBG90043.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168] Length = 147 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 MR FY ND E + + + + GKRV + C +E+ L+E LW Sbjct: 1 MRNATFYLLDNDNTADGLSAVEQLVCEIAAERWRSGKRVLIACENEQQALRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|206562896|ref|YP_002233659.1| hypothetical protein BCAM1044 [Burkholderia cenocepacia J2315] gi|198038936|emb|CAR54898.1| hypothetical phage protein [Burkholderia cenocepacia J2315] Length = 106 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 4/41 (9%) Query: 6 FYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNE 46 + ++++W+ L EY +G+R++++C E VRD+LNE Sbjct: 66 LHEYQSNWDTGLPA----EYAQGERIAMECAVEAVRDALNE 102 >gi|229588595|ref|YP_002870714.1| DNA polymerase III subunit chi [Pseudomonas fluorescens SBW25] gi|229360461|emb|CAY47318.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens SBW25] Length = 142 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 22/41 (53%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 L + + G R+ + C RD L+ LW +K + F+PHG Sbjct: 24 LTEKAWRMGHRIYLHCSDAAQRDELDARLWRFKGESFVPHG 64 >gi|312959166|ref|ZP_07773685.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6] gi|311286936|gb|EFQ65498.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6] Length = 142 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 22/41 (53%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 L + + G R+ + C RD L+ LW +K + F+PHG Sbjct: 24 LTEKAWRMGHRIYLHCSDATQRDELDARLWRFKGESFVPHG 64 >gi|157804263|ref|YP_001492812.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel] gi|157785526|gb|ABV74027.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel] Length = 154 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI 100 ++ LN+ LWT+ + F+PHG + + + QP+ +T N N +++ ++ + + I Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLIII--SPIDI 96 Query: 101 GDV----DYYE--KVVFII 113 G + DY E K + II Sbjct: 97 GKILQVKDYIEVFKRIIII 115 >gi|299771882|ref|YP_003733908.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter sp. DR1] gi|298701970|gb|ADI92535.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter sp. DR1] Length = 135 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + +K ++ C +++ L+E LW + F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDMQLQQMLDERLWEFDPVSFI 60 Query: 58 PHGVDVGDEG-DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HGVD D S+ QP+ + N N + VD++ ++ I+ + Sbjct: 61 AHGVDQTDAAVCISAKQPLEQGLLVFNFNNHALE-----------QVDHFSHIIEIVENN 109 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 + + GR ++ + G P Sbjct: 110 ETAK-QIGREKFKMYRRLGIEP 130 >gi|15599027|ref|NP_252521.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAO1] gi|107103352|ref|ZP_01367270.1| hypothetical protein PaerPA_01004421 [Pseudomonas aeruginosa PACS2] gi|254236736|ref|ZP_04930059.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719] gi|296387651|ref|ZP_06877126.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAb1] gi|12230135|sp|O68823|HOLC_PSEAE RecName: Full=DNA polymerase III subunit chi gi|9950007|gb|AAG07219.1|AE004800_8 DNA polymerase III, chi subunit [Pseudomonas aeruginosa PAO1] gi|2984772|gb|AAD04822.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa] gi|126168667|gb|EAZ54178.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719] Length = 142 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + +G +V + C E R L+ LW+++ + F+PH + D + PV L + Sbjct: 24 LAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N + L++ G V + +V ++ ++ + R +R + GY Sbjct: 79 GEPPGNHRDL--LINLTLEAPGFVPNFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132 >gi|49076858|gb|AAT49608.1| PA3832 [synthetic construct] Length = 143 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + +G +V + C E R L+ LW+++ + F+PH + D + PV L + Sbjct: 24 LAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N + L++ G V + +V ++ ++ + R +R + GY Sbjct: 79 GEPPGNHRDL--LINLTLEAPGFVPNFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132 >gi|240948837|ref|ZP_04753193.1| DNA polymerase III subunit chi [Actinobacillus minor NM305] gi|240296652|gb|EER47263.1| DNA polymerase III subunit chi [Actinobacillus minor NM305] Length = 140 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 1 MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M+ + FY D Y L + GKRV + C +E+ ++E LW + D F+PH Sbjct: 1 MKQVQFYVLTQDNIYEQACDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60 Query: 60 GV 61 + Sbjct: 61 NL 62 >gi|325124202|gb|ADY83725.1| DNA polymerase III, chi subunit [Acinetobacter calcoaceticus PHEA-2] Length = 135 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + +K ++ C +++ +L+E LW + F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDVQLQQTLDERLWDFDPASFI 60 Query: 58 PHGVDVGDEG-DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HG+D + S+ QP+ + N N + VD++ ++ I+ + Sbjct: 61 AHGIDQAEAAVCISAKQPLEQGLLVFNFNNHALE-----------QVDHFSHIIEIVENN 109 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 + + GR ++ + G P Sbjct: 110 ETAK-QIGREKFKMYRRLGIEP 130 >gi|237746981|ref|ZP_04577461.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS] gi|229378332|gb|EEO28423.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS] Length = 141 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 R+ + + + L++ LWT+ FLPH + +GD +S PVLLT Sbjct: 32 RIVILSSDRNLLNRLDDALWTFSDSDFLPHAM-LGDR--LASRSPVLLTYDD-QCEMPHH 87 Query: 90 RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + LV+ + +++++ +++T+ + E GR + + GYA Sbjct: 88 QILVNLSPAIPACYARFDRLIELVSTETADT-EAGRQRYVHYRERGYA 134 >gi|194749909|ref|XP_001957378.1| GF10393 [Drosophila ananassae] gi|190624660|gb|EDV40184.1| GF10393 [Drosophila ananassae] Length = 817 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 37 SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90 +E+ R SL + L TWK D L G +VG + ++Q + LT++SL T +R Sbjct: 95 TEKCRQSLTKELQTWKADVVLHDGAPNVGRNWIYDAYQQICLTLNSLKLATQFLR 149 >gi|206561013|ref|YP_002231778.1| DNA polymerase III subunit chi [Burkholderia cenocepacia J2315] gi|198037055|emb|CAR52976.1| putative DNA polymerase III chi subunit [Burkholderia cenocepacia J2315] Length = 138 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 LL+ Y+ G+ V V R+R +L+E LWT+ F+PH G + + ++ P++L Sbjct: 20 LLRKAYQAGQPVVVLAEPARLR-ALDERLWTFSPLDFIPH---CGVDSEHAAGTPIVLA 74 >gi|153877788|ref|ZP_02004368.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS] gi|152065748|gb|EDN65632.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS] Length = 143 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G R+ +Q S L+ +LW +K++ FLPH D+ E S P+ + S+ Sbjct: 31 QGYRIYIQTTSLAQAQQLDNFLWVFKEESFLPH--DIYPEMS-ESLAPIRIGYSAQVCEG 87 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 + L++ + ++++ I+N D + + GR +R ++ Y Sbjct: 88 MDV--LINLTETVPPFFESFQRIAEIVN-DTPYAKQAGRTRYRFYRDKAY 134 >gi|107023403|ref|YP_621730.1| DNA polymerase III subunit chi [Burkholderia cenocepacia AU 1054] gi|116690485|ref|YP_836108.1| DNA polymerase III subunit chi [Burkholderia cenocepacia HI2424] gi|170733806|ref|YP_001765753.1| DNA polymerase III subunit chi [Burkholderia cenocepacia MC0-3] gi|254247473|ref|ZP_04940794.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia PC184] gi|105893592|gb|ABF76757.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia AU 1054] gi|116648574|gb|ABK09215.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia HI2424] gi|124872249|gb|EAY63965.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia PC184] gi|169817048|gb|ACA91631.1| DNA polymerase III chi subunit HolC [Burkholderia cenocepacia MC0-3] Length = 138 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 LL+ Y+ G+ V V R+R +L+E LWT+ F+PH G + + ++ P++L Sbjct: 20 LLRKAYQAGQPVVVLAEPARLR-ALDERLWTFSPLDFIPH---CGVDSEHAAGTPIVLA 74 >gi|330811516|ref|YP_004355978.1| DNA polymerase III, chi subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379624|gb|AEA70974.1| Putative DNA polymerase III, chi subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 142 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 23/41 (56%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 L++ + G R+ + C R+ L+ LW +K + F+PHG Sbjct: 24 LVEKAWRMGHRIYLHCSDAAQREDLDARLWAFKGESFVPHG 64 >gi|262045297|ref|ZP_06018322.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330016473|ref|ZP_08308446.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3] gi|259037353|gb|EEW38599.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328528834|gb|EGF55777.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3] Length = 147 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW+ Sbjct: 1 MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|313497346|gb|ADR58712.1| HolC [Pseudomonas putida BIRD-1] Length = 142 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G RV + C R L++ LW +K + F+PH D + + V+L + Sbjct: 24 LCEKAWRLGHRVYLHCQDAEQRIELDQRLWRFKGEAFVPH-----DLAEVHADADVVLGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + NA L++ + G V +E+V I+ ++ + R +R + GYA Sbjct: 79 TD-NAGEHH-GLLINLGASVPGFVGQFERVAEIV-VEEPAIRQSARERFRFYREQGYA 133 >gi|238892748|ref|YP_002917482.1| DNA polymerase III subunit chi [Klebsiella pneumoniae NTUH-K2044] gi|238545064|dbj|BAH61415.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 158 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW+ Sbjct: 12 MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 71 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 72 PESFVPHNL 80 >gi|58038767|ref|YP_190731.1| DNA polymerase III subunit chi [Gluconobacter oxydans 621H] gi|58001181|gb|AAW60075.1| DNA polymerase III, chi subunit [Gluconobacter oxydans 621H] Length = 147 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E L LL + G+R V+C +L+ LW + +LPHG + + Q Sbjct: 14 EEALPALLGRTLDAGERAVVRCPDAAAVMALDAALWACRDPVWLPHGT---AKSGHAVRQ 70 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 P+ LT N + F VD A + + ++ + + + S++ R W ++K+ Sbjct: 71 PIWLTEGEDVPNEARFLFRVDGAGSD--EFAPFTRIFDLFDGGNPQSVQRARQRWVAMKS 128 Query: 134 SGY 136 G+ Sbjct: 129 FGH 131 >gi|238798774|ref|ZP_04642245.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC 43969] gi|238717406|gb|EEQ09251.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC 43969] Length = 149 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%) Query: 23 DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSL 82 + + GKRV + C SE L+E LW D F+PH + G+ + + PV L Sbjct: 31 ERWRAGKRVLIACESEEQAQRLDEALWQRTPDQFVPHNL-AGEGPKYGA--PVELAWPER 87 Query: 83 NANTST---IRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N+ I L + A ++E V F+ ++ L R ++S ++ G+ Sbjct: 88 RGNSPRDLLISLLPEFAGFATA---FHEVVDFVPYEENLKQL--ARDRYKSYRSVGF 139 >gi|307261985|ref|ZP_07543641.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868316|gb|EFN00137.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 145 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 24/42 (57%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 L D + GKRV + C +E+ +++E LW D F+PH + Sbjct: 27 LAADAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNL 68 >gi|238785040|ref|ZP_04629037.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC 43970] gi|238714081|gb|EEQ06096.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC 43970] Length = 149 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%) Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTS 87 GKRV + C SE L+E LW D F+PH + G+ + + PV L N+ Sbjct: 36 GKRVLIACESEEQAQRLDEALWQRAPDQFVPHNL-AGEGPKYGA--PVELAWPERRGNSP 92 Query: 88 T---IRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 I L + A ++E V F+ ++ L R ++S ++ G+ Sbjct: 93 RDLLISLLPEFAGFATA---FHEVVDFVPYEENLKQL--ARDRYKSYRSVGF 139 >gi|303251672|ref|ZP_07337845.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307246420|ref|ZP_07528494.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250778|ref|ZP_07532709.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253153|ref|ZP_07535032.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255405|ref|ZP_07537213.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257574|ref|ZP_07539335.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259855|ref|ZP_07541571.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302649514|gb|EFL79697.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852671|gb|EFM84902.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857190|gb|EFM89315.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859366|gb|EFM91400.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861634|gb|EFM93620.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863922|gb|EFM95844.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866078|gb|EFM97950.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 145 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 24/42 (57%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 L D + GKRV + C +E+ +++E LW D F+PH + Sbjct: 27 LAADAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNL 68 >gi|152973136|ref|YP_001338282.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957985|gb|ABR80015.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 147 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW+ Sbjct: 1 MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|257465132|ref|ZP_05629503.1| DNA polymerase III subunit chi [Actinobacillus minor 202] gi|257450792|gb|EEV24835.1| DNA polymerase III subunit chi [Actinobacillus minor 202] Length = 140 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 1 MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M+ + FY D Y L + GKRV + C +E+ ++E LW + D F+PH Sbjct: 1 MKQVQFYVLTQDNIYEHTCDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60 Query: 60 GV 61 + Sbjct: 61 NL 62 >gi|77457215|ref|YP_346720.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf0-1] gi|77381218|gb|ABA72731.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens Pf0-1] Length = 142 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 G R+ + C RD L+ LW +K + F+PHG Sbjct: 32 GHRIYLHCSDAAQRDDLDARLWAFKGETFVPHG 64 >gi|157147737|ref|YP_001455056.1| DNA polymerase III subunit chi [Citrobacter koseri ATCC BAA-895] gi|157084942|gb|ABV14620.1| hypothetical protein CKO_03541 [Citrobacter koseri ATCC BAA-895] Length = 147 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYILDNDTTIDGLSAVEQLVCDIAAERWRSGKRVLIACEDEKQAIRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|70728447|ref|YP_258196.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf-5] gi|68342746|gb|AAY90352.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens Pf-5] Length = 142 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 G R+ + C RD L+ LW +K + F+PHG Sbjct: 32 GHRIYLHCSDAEQRDELDARLWRFKGETFVPHG 64 >gi|330962171|gb|EGH62431.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. maculicola str. ES4326] Length = 142 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G +V + C R+ L+ LW +K + FLPHG D + D PV+L Sbjct: 24 LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFKGEVFLPHG-DAESDHD----APVVL-- 76 Query: 80 SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 L A+ L+ + I + +V ++ D L R +RS + GY P Sbjct: 77 -GLGADPGAHDDLLVNLDLSIPAFFSRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134 >gi|149907706|ref|ZP_01896453.1| DNA polymerase III, chi subunit [Moritella sp. PE36] gi|149809376|gb|EDM69305.1| DNA polymerase III, chi subunit [Moritella sp. PE36] Length = 147 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 Y++G+RV + E + ++EYLW F+PH + Sbjct: 35 YQQGQRVYIHANDESAANQVDEYLWQLDASSFVPHNLQ 72 >gi|104783413|ref|YP_609911.1| DNA polymerase III subunit chi [Pseudomonas entomophila L48] gi|95112400|emb|CAK17127.1| DNA polymerase III, chi subunit [Pseudomonas entomophila L48] Length = 142 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 8/118 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G RV + C E R L+E LW +K + F+PH + Q + + Sbjct: 24 LCEKAWRLGHRVYLHCQDEAQRLDLDERLWRFKGEAFIPH-------NHAETHQDASVAL 76 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 N L++ G V +E+V I+ + L R +R + GYA Sbjct: 77 GLGNDAGEHRDLLINLGGDVPGFVGQFERVAEIVVEEPTIRLA-ARERFRFYREQGYA 133 >gi|146313283|ref|YP_001178357.1| DNA polymerase III subunit chi [Enterobacter sp. 638] gi|145320159|gb|ABP62306.1| DNA polymerase III, chi subunit [Enterobacter sp. 638] Length = 147 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|37528303|ref|NP_931648.1| DNA polymerase III subunit chi [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787741|emb|CAE16854.1| DNA polymerase III, chi subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 149 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 24/39 (61%) Query: 23 DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 D++ GKRV + C +++ + L+E LW + F+PH + Sbjct: 31 DQWRAGKRVLIACENQQQAEKLDEALWQREPHQFVPHNL 69 >gi|30065454|ref|NP_839625.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T] gi|56480552|ref|NP_709942.2| DNA polymerase III subunit chi [Shigella flexneri 2a str. 301] gi|30043718|gb|AAP19437.1| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 2457T] gi|56384103|gb|AAN45649.2| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 301] gi|313646459|gb|EFS10921.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T] gi|332748944|gb|EGJ79367.1| DNA polymerase III subunit chi [Shigella flexneri K-671] gi|332749219|gb|EGJ79640.1| DNA polymerase III subunit chi [Shigella flexneri 4343-70] gi|332749835|gb|EGJ80248.1| DNA polymerase III subunit chi [Shigella flexneri 2747-71] gi|332763117|gb|EGJ93360.1| DNA polymerase III chi subunit, HolC family protein [Shigella flexneri 2930-71] gi|333009110|gb|EGK28566.1| DNA polymerase III subunit chi [Shigella flexneri K-218] gi|333011947|gb|EGK31332.1| DNA polymerase III subunit chi [Shigella flexneri K-304] Length = 147 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|43310|emb|CAA33226.1| unnamed protein product [Escherichia coli K-12] Length = 102 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|253775118|ref|YP_003037949.1| DNA polymerase III subunit chi [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164184|ref|YP_003047294.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606] gi|297520319|ref|ZP_06938705.1| DNA polymerase III subunit chi [Escherichia coli OP50] gi|301028096|ref|ZP_07191374.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1] gi|312965939|ref|ZP_07780165.1| DNA polymerase III subunit chi [Escherichia coli 2362-75] gi|31323177|gb|AAP43522.1| HolC [Escherichia coli B] gi|242379779|emb|CAQ34606.1| DNA polymerase III, chi subunit, subunit of DNA polymerase III, preinitiation complex and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253326162|gb|ACT30764.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976087|gb|ACT41758.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606] gi|253980243|gb|ACT45913.1| DNA polymerase III subunit chi [Escherichia coli BL21(DE3)] gi|299878813|gb|EFI87024.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1] gi|312289182|gb|EFR17076.1| DNA polymerase III subunit chi [Escherichia coli 2362-75] gi|323975398|gb|EGB70499.1| DNA polymerase III chi subunit protein [Escherichia coli TW10509] Length = 147 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTIDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|323171704|gb|EFZ57350.1| DNA polymerase III subunit chi [Escherichia coli LT-68] Length = 147 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWHSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|296104926|ref|YP_003615072.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059385|gb|ADF64123.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 147 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|28868481|ref|NP_791100.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato str. DC3000] gi|213968385|ref|ZP_03396529.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato T1] gi|301384651|ref|ZP_07233069.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato Max13] gi|302059575|ref|ZP_07251116.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato K40] gi|302133009|ref|ZP_07258999.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851719|gb|AAO54795.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213927023|gb|EEB60574.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato T1] gi|331015237|gb|EGH95293.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 142 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G +V + C R+ L+ LW ++ + FLPHG D + D PV+L Sbjct: 24 LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-DAESDHD----APVVL-- 76 Query: 80 SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 L ++ T + L+ + I + +V ++ D L R +RS + GY P Sbjct: 77 -GLGDDSGTHQDLLVNLDLSIPAFFKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134 >gi|15804851|ref|NP_290892.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 EDL933] gi|15834490|ref|NP_313263.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. Sakai] gi|26251167|ref|NP_757207.1| DNA polymerase III subunit chi [Escherichia coli CFT073] gi|74314738|ref|YP_313157.1| DNA polymerase III subunit chi [Shigella sonnei Ss046] gi|82546488|ref|YP_410435.1| DNA polymerase III subunit chi [Shigella boydii Sb227] gi|82779325|ref|YP_405674.1| DNA polymerase III subunit chi [Shigella dysenteriae Sd197] gi|91213814|ref|YP_543800.1| DNA polymerase III subunit chi [Escherichia coli UTI89] gi|110644618|ref|YP_672348.1| DNA polymerase III subunit chi [Escherichia coli 536] gi|110808001|ref|YP_691521.1| DNA polymerase III subunit chi [Shigella flexneri 5 str. 8401] gi|117626603|ref|YP_859926.1| DNA polymerase III subunit chi [Escherichia coli APEC O1] gi|157159204|ref|YP_001465767.1| DNA polymerase III subunit chi [Escherichia coli E24377A] gi|157163734|ref|YP_001461052.1| DNA polymerase III subunit chi [Escherichia coli HS] gi|168751048|ref|ZP_02776070.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4113] gi|168754839|ref|ZP_02779846.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4401] gi|168760512|ref|ZP_02785519.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4501] gi|168766548|ref|ZP_02791555.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4486] gi|168774021|ref|ZP_02799028.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4196] gi|168782784|ref|ZP_02807791.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4076] gi|168784907|ref|ZP_02809914.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC869] gi|168797837|ref|ZP_02822844.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC508] gi|170021733|ref|YP_001726687.1| DNA polymerase III subunit chi [Escherichia coli ATCC 8739] gi|170766907|ref|ZP_02901360.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627] gi|187734100|ref|YP_001882957.1| DNA polymerase III subunit chi [Shigella boydii CDC 3083-94] gi|188496447|ref|ZP_03003717.1| DNA polymerase III, chi subunit [Escherichia coli 53638] gi|191167277|ref|ZP_03029095.1| DNA polymerase III, chi subunit [Escherichia coli B7A] gi|191170788|ref|ZP_03032340.1| DNA polymerase III, chi subunit [Escherichia coli F11] gi|193069853|ref|ZP_03050803.1| DNA polymerase III, chi subunit [Escherichia coli E110019] gi|194426628|ref|ZP_03059182.1| DNA polymerase III, chi subunit [Escherichia coli B171] gi|194433898|ref|ZP_03066171.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012] gi|195937284|ref|ZP_03082666.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. EC4024] gi|208805655|ref|ZP_03247992.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4206] gi|208813184|ref|ZP_03254513.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4045] gi|208821682|ref|ZP_03262002.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4042] gi|209400926|ref|YP_002273803.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4115] gi|209921756|ref|YP_002295840.1| DNA polymerase III subunit chi [Escherichia coli SE11] gi|215489601|ref|YP_002332032.1| DNA polymerase III subunit chi [Escherichia coli O127:H6 str. E2348/69] gi|217325710|ref|ZP_03441794.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW14588] gi|218551555|ref|YP_002385347.1| DNA polymerase III subunit chi [Escherichia fergusonii ATCC 35469] gi|218556806|ref|YP_002389720.1| DNA polymerase III subunit chi [Escherichia coli IAI1] gi|218561417|ref|YP_002394330.1| DNA polymerase III subunit chi [Escherichia coli S88] gi|218692646|ref|YP_002400858.1| DNA polymerase III subunit chi [Escherichia coli ED1a] gi|218698007|ref|YP_002405674.1| DNA polymerase III subunit chi [Escherichia coli 55989] gi|218702962|ref|YP_002410591.1| DNA polymerase III subunit chi [Escherichia coli IAI39] gi|218707865|ref|YP_002415384.1| DNA polymerase III subunit chi [Escherichia coli UMN026] gi|227886687|ref|ZP_04004492.1| DNA polymerase III, chi subunit [Escherichia coli 83972] gi|237703934|ref|ZP_04534415.1| DNA polymerase III [Escherichia sp. 3_2_53FAA] gi|254796279|ref|YP_003081116.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. TW14359] gi|260847090|ref|YP_003224868.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str. 12009] gi|260871011|ref|YP_003237413.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str. 11128] gi|261225378|ref|ZP_05939659.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255369|ref|ZP_05947902.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285671|ref|YP_003502489.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str. CB9615] gi|293402884|ref|ZP_06646981.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412] gi|293417758|ref|ZP_06660380.1| DNA polymerase III subunit chi [Escherichia coli B185] gi|298378410|ref|ZP_06988294.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302] gi|300899408|ref|ZP_07117663.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1] gi|300906106|ref|ZP_07123825.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1] gi|300923936|ref|ZP_07139946.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1] gi|300928084|ref|ZP_07143632.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1] gi|300950213|ref|ZP_07164153.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1] gi|300957119|ref|ZP_07169360.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1] gi|300972384|ref|ZP_07171917.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1] gi|300988163|ref|ZP_07178583.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1] gi|301050055|ref|ZP_07196967.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1] gi|301304690|ref|ZP_07210798.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1] gi|301643394|ref|ZP_07243444.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1] gi|306815523|ref|ZP_07449672.1| DNA polymerase III subunit chi [Escherichia coli NC101] gi|307140954|ref|ZP_07500310.1| DNA polymerase III subunit chi [Escherichia coli H736] gi|309784108|ref|ZP_07678750.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617] gi|312973924|ref|ZP_07788095.1| DNA polymerase III subunit chi [Escherichia coli 1827-70] gi|331650392|ref|ZP_08351464.1| DNA polymerase III subunit chi [Escherichia coli M605] gi|331656093|ref|ZP_08357081.1| DNA polymerase III subunit chi [Escherichia coli M718] gi|331660840|ref|ZP_08361772.1| DNA polymerase III subunit chi [Escherichia coli TA206] gi|331671167|ref|ZP_08372000.1| DNA polymerase III subunit chi [Escherichia coli TA271] gi|12519268|gb|AAG59458.1|AE005657_18 DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EDL933] gi|26111599|gb|AAN83781.1|AE016771_292 DNA polymerase III, chi subunit [Escherichia coli CFT073] gi|13364714|dbj|BAB38659.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. Sakai] gi|73858215|gb|AAZ90922.1| DNA polymerase III chi subunit [Shigella sonnei Ss046] gi|81243473|gb|ABB64183.1| DNA polymerase III, chi subunit [Shigella dysenteriae Sd197] gi|81247899|gb|ABB68607.1| DNA polymerase III chi subunit [Shigella boydii Sb227] gi|91075388|gb|ABE10269.1| DNA polymerase III, chi subunit [Escherichia coli UTI89] gi|110346210|gb|ABG72447.1| DNA polymerase III, chi subunit [Escherichia coli 536] gi|110617549|gb|ABF06216.1| DNA polymerase III, chi subunit [Shigella flexneri 5 str. 8401] gi|115515727|gb|ABJ03802.1| DNA polymerase III subunit chi [Escherichia coli APEC O1] gi|157069414|gb|ABV08669.1| DNA polymerase III, chi subunit [Escherichia coli HS] gi|157081234|gb|ABV20942.1| DNA polymerase III, chi subunit [Escherichia coli E24377A] gi|169756661|gb|ACA79360.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739] gi|170124345|gb|EDS93276.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627] gi|187431092|gb|ACD10366.1| DNA polymerase III, chi subunit [Shigella boydii CDC 3083-94] gi|187770208|gb|EDU34052.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4196] gi|188014810|gb|EDU52932.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4113] gi|188491646|gb|EDU66749.1| DNA polymerase III, chi subunit [Escherichia coli 53638] gi|188999780|gb|EDU68766.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4076] gi|189357771|gb|EDU76190.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4401] gi|189364253|gb|EDU82672.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4486] gi|189368872|gb|EDU87288.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4501] gi|189375030|gb|EDU93446.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC869] gi|189379542|gb|EDU97958.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC508] gi|190902730|gb|EDV62461.1| DNA polymerase III, chi subunit [Escherichia coli B7A] gi|190909012|gb|EDV68599.1| DNA polymerase III, chi subunit [Escherichia coli F11] gi|192956907|gb|EDV87360.1| DNA polymerase III, chi subunit [Escherichia coli E110019] gi|194415367|gb|EDX31635.1| DNA polymerase III, chi subunit [Escherichia coli B171] gi|194417879|gb|EDX33975.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012] gi|208725456|gb|EDZ75057.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4206] gi|208734461|gb|EDZ83148.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4045] gi|208741805|gb|EDZ89487.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4042] gi|209162326|gb|ACI39759.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4115] gi|209749468|gb|ACI73041.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749470|gb|ACI73042.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749472|gb|ACI73043.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749474|gb|ACI73044.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749476|gb|ACI73045.1| DNA polymerase III chi subunit [Escherichia coli] gi|209915015|dbj|BAG80089.1| DNA polymerase III chi subunit [Escherichia coli SE11] gi|215267673|emb|CAS12131.1| DNA polymerase III, chi subunit [Escherichia coli O127:H6 str. E2348/69] gi|217321931|gb|EEC30355.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW14588] gi|218354739|emb|CAV01801.1| DNA polymerase III, chi subunit [Escherichia coli 55989] gi|218359097|emb|CAQ91758.1| DNA polymerase III, chi subunit [Escherichia fergusonii ATCC 35469] gi|218363575|emb|CAR01232.1| DNA polymerase III, chi subunit [Escherichia coli IAI1] gi|218368186|emb|CAR05994.1| DNA polymerase III, chi subunit [Escherichia coli S88] gi|218372948|emb|CAR20829.1| DNA polymerase III, chi subunit [Escherichia coli IAI39] gi|218430210|emb|CAR11067.1| DNA polymerase III, chi subunit [Escherichia coli ED1a] gi|218434962|emb|CAR15903.1| DNA polymerase III, chi subunit [Escherichia coli UMN026] gi|222036031|emb|CAP78776.1| DNA polymerase III subunit chi [Escherichia coli LF82] gi|226901846|gb|EEH88105.1| DNA polymerase III [Escherichia sp. 3_2_53FAA] gi|227836260|gb|EEJ46726.1| DNA polymerase III, chi subunit [Escherichia coli 83972] gi|254595679|gb|ACT75040.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW14359] gi|257762237|dbj|BAI33734.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str. 12009] gi|257767367|dbj|BAI38862.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str. 11128] gi|281181357|dbj|BAI57687.1| DNA polymerase III chi subunit [Escherichia coli SE15] gi|284924429|emb|CBG37554.1| DNA polymerase III, chi subunit [Escherichia coli 042] gi|290765544|gb|ADD59505.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str. CB9615] gi|291429799|gb|EFF02813.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412] gi|291430476|gb|EFF03474.1| DNA polymerase III subunit chi [Escherichia coli B185] gi|294489855|gb|ADE88611.1| DNA polymerase III, chi subunit [Escherichia coli IHE3034] gi|298280744|gb|EFI22245.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302] gi|300298213|gb|EFJ54598.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1] gi|300305973|gb|EFJ60493.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1] gi|300316137|gb|EFJ65921.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1] gi|300356986|gb|EFJ72856.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1] gi|300402049|gb|EFJ85587.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1] gi|300410963|gb|EFJ94501.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1] gi|300419814|gb|EFK03125.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1] gi|300450434|gb|EFK14054.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1] gi|300463881|gb|EFK27374.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1] gi|300840040|gb|EFK67800.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1] gi|301078224|gb|EFK93030.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1] gi|305851185|gb|EFM51640.1| DNA polymerase III subunit chi [Escherichia coli NC101] gi|307556429|gb|ADN49204.1| DNA polymerase III, chi subunit [Escherichia coli ABU 83972] gi|307629335|gb|ADN73639.1| DNA polymerase III subunit chi [Escherichia coli UM146] gi|308928101|gb|EFP73566.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617] gi|309704763|emb|CBJ04114.1| DNA polymerase III, chi subunit [Escherichia coli ETEC H10407] gi|310331458|gb|EFP98714.1| DNA polymerase III subunit chi [Escherichia coli 1827-70] gi|312948912|gb|ADR29739.1| DNA polymerase III subunit chi [Escherichia coli O83:H1 str. NRG 857C] gi|315255616|gb|EFU35584.1| DNA polymerase III subunit chi [Escherichia coli MS 85-1] gi|315288384|gb|EFU47782.1| DNA polymerase III subunit chi [Escherichia coli MS 110-3] gi|315293630|gb|EFU52982.1| DNA polymerase III subunit chi [Escherichia coli MS 153-1] gi|315298975|gb|EFU58229.1| DNA polymerase III subunit chi [Escherichia coli MS 16-3] gi|320174753|gb|EFW49882.1| DNA polymerase III chi subunit [Shigella dysenteriae CDC 74-1112] gi|320177613|gb|EFW52603.1| DNA polymerase III chi subunit [Shigella boydii ATCC 9905] gi|320190607|gb|EFW65257.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. EC1212] gi|320193623|gb|EFW68258.1| DNA polymerase III chi subunit [Escherichia coli WV_060327] gi|320639016|gb|EFX08662.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. G5101] gi|320644386|gb|EFX13451.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str. 493-89] gi|320649703|gb|EFX18227.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str. H 2687] gi|320655100|gb|EFX23061.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660606|gb|EFX28067.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str. USDA 5905] gi|320665533|gb|EFX32579.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. LSU-61] gi|323162057|gb|EFZ47929.1| DNA polymerase III subunit chi [Escherichia coli E128010] gi|323166622|gb|EFZ52381.1| DNA polymerase III subunit chi [Shigella sonnei 53G] gi|323176173|gb|EFZ61765.1| DNA polymerase III subunit chi [Escherichia coli 1180] gi|323181992|gb|EFZ67403.1| DNA polymerase III subunit chi [Escherichia coli 1357] gi|323189860|gb|EFZ75138.1| DNA polymerase III subunit chi [Escherichia coli RN587/1] gi|323380354|gb|ADX52622.1| DNA-directed DNA polymerase [Escherichia coli KO11] gi|323935381|gb|EGB31729.1| DNA polymerase III chi [Escherichia coli E1520] gi|323940177|gb|EGB36371.1| DNA polymerase III chi subunit protein [Escherichia coli E482] gi|323945992|gb|EGB42030.1| DNA polymerase III chi [Escherichia coli H120] gi|323950672|gb|EGB46550.1| DNA polymerase III chi subunit protein [Escherichia coli H252] gi|323955545|gb|EGB51309.1| DNA polymerase III chi subunit protein [Escherichia coli H263] gi|323960300|gb|EGB55941.1| DNA polymerase III chi subunit protein [Escherichia coli H489] gi|324005160|gb|EGB74379.1| DNA polymerase III subunit chi [Escherichia coli MS 57-2] gi|324013723|gb|EGB82942.1| DNA polymerase III subunit chi [Escherichia coli MS 60-1] gi|324112117|gb|EGC06095.1| DNA polymerase III chi subunit protein [Escherichia fergusonii B253] gi|326345408|gb|EGD69151.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. 1125] gi|326346736|gb|EGD70470.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. 1044] gi|331040786|gb|EGI12944.1| DNA polymerase III subunit chi [Escherichia coli M605] gi|331046447|gb|EGI18537.1| DNA polymerase III subunit chi [Escherichia coli M718] gi|331051882|gb|EGI23921.1| DNA polymerase III subunit chi [Escherichia coli TA206] gi|331061756|gb|EGI33682.1| DNA polymerase III subunit chi [Escherichia coli TA271] gi|332083259|gb|EGI88490.1| DNA polymerase III subunit chi [Shigella boydii 5216-82] gi|332083710|gb|EGI88928.1| DNA polymerase III subunit chi [Shigella dysenteriae 155-74] gi|332087007|gb|EGI92141.1| DNA polymerase III subunit chi [Shigella boydii 3594-74] gi|332346337|gb|AEE59671.1| DNA polymerase III subunit [Escherichia coli UMNK88] gi|333010225|gb|EGK29658.1| DNA polymerase III subunit chi [Shigella flexneri VA-6] gi|333011248|gb|EGK30662.1| DNA polymerase III subunit chi [Shigella flexneri K-272] gi|333012145|gb|EGK31527.1| DNA polymerase III subunit chi [Shigella flexneri K-227] Length = 147 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|309792900|ref|ZP_07687328.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7] gi|308123186|gb|EFO60448.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7] gi|323965648|gb|EGB61102.1| DNA polymerase III chi subunit protein [Escherichia coli M863] gi|327250204|gb|EGE61923.1| DNA polymerase III subunit chi [Escherichia coli STEC_7v] Length = 147 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|295097700|emb|CBK86790.1| DNA polymerase III, chi subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 147 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 PESFVPHNL 69 >gi|320184515|gb|EFW59317.1| DNA polymerase III chi subunit [Shigella flexneri CDC 796-83] Length = 147 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSTVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|167835787|ref|ZP_02462670.1| DNA polymerase III subunit chi [Burkholderia thailandensis MSMB43] Length = 138 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 LL+ Y+ G+ V V R+R +L+E LWT+ F+PH + ++ P++LT Sbjct: 20 LLRKAYQAGRPVVVCAEPARLR-ALDERLWTFSPLDFIPH---CAVDNAHAAGTPIVLTA 75 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII-NTDDQGSLEWGRAHWRSLKNSGYA 137 A I L++ + +E+++ ++ NT D+ L GR +R ++ GYA Sbjct: 76 DLDRAPHHGI--LLNLGAQVPAQFARFERLLEVVGNTPDE--LAAGRDRYRFYRDRGYA 130 >gi|193063698|ref|ZP_03044786.1| DNA polymerase III, chi subunit [Escherichia coli E22] gi|256019910|ref|ZP_05433775.1| DNA polymerase III subunit chi [Shigella sp. D9] gi|293476562|ref|ZP_06664970.1| DNA polymerase III subunit chi [Escherichia coli B088] gi|300818516|ref|ZP_07098725.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1] gi|300821366|ref|ZP_07101514.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7] gi|300916354|ref|ZP_07133097.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1] gi|307312966|ref|ZP_07592594.1| DNA-directed DNA polymerase [Escherichia coli W] gi|331645008|ref|ZP_08346125.1| DNA polymerase III subunit chi [Escherichia coli H736] gi|331680397|ref|ZP_08381056.1| DNA polymerase III subunit chi [Escherichia coli H591] gi|332281051|ref|ZP_08393464.1| DNA polymerase III subunit chi [Shigella sp. D9] gi|192930685|gb|EDV83291.1| DNA polymerase III, chi subunit [Escherichia coli E22] gi|291321015|gb|EFE60457.1| DNA polymerase III subunit chi [Escherichia coli B088] gi|300416333|gb|EFJ99643.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1] gi|300526255|gb|EFK47324.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7] gi|300528920|gb|EFK49982.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1] gi|306907134|gb|EFN37641.1| DNA-directed DNA polymerase [Escherichia coli W] gi|315063566|gb|ADT77893.1| DNA polymerase III, chi subunit [Escherichia coli W] gi|320200611|gb|EFW75197.1| DNA polymerase III chi subunit [Escherichia coli EC4100B] gi|324019267|gb|EGB88486.1| DNA polymerase III subunit chi [Escherichia coli MS 117-3] gi|324118820|gb|EGC12712.1| DNA polymerase III chi subunit protein [Escherichia coli E1167] gi|331035983|gb|EGI08221.1| DNA polymerase III subunit chi [Escherichia coli H736] gi|331071860|gb|EGI43196.1| DNA polymerase III subunit chi [Escherichia coli H591] gi|332103403|gb|EGJ06749.1| DNA polymerase III subunit chi [Shigella sp. D9] Length = 160 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|325499817|gb|EGC97676.1| DNA polymerase III subunit chi [Escherichia fergusonii ECD227] Length = 160 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|161505036|ref|YP_001572148.1| DNA polymerase III subunit chi [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866383|gb|ABX23006.1| hypothetical protein SARI_03167 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 147 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYILDNDTAVDGLSAVEQLVCDIAAERWRSGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|281603542|gb|ADA76526.1| DNA polymerase III, chi subunit [Shigella flexneri 2002017] Length = 160 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|194437758|ref|ZP_03069853.1| DNA polymerase III, chi subunit [Escherichia coli 101-1] gi|256025195|ref|ZP_05439060.1| DNA polymerase III subunit chi [Escherichia sp. 4_1_40B] gi|260858411|ref|YP_003232302.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str. 11368] gi|301329235|ref|ZP_07222216.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1] gi|194423254|gb|EDX39246.1| DNA polymerase III, chi subunit [Escherichia coli 101-1] gi|257757060|dbj|BAI28562.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str. 11368] gi|300844443|gb|EFK72203.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1] gi|323157533|gb|EFZ43642.1| DNA polymerase III subunit chi [Escherichia coli EPECa14] gi|323970487|gb|EGB65746.1| DNA polymerase III chi subunit protein [Escherichia coli TA007] Length = 147 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|16132081|ref|NP_418680.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. MG1655] gi|89110975|ref|AP_004755.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. W3110] gi|170083698|ref|YP_001733018.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. DH10B] gi|238903360|ref|YP_002929156.1| DNA polymerase III, chi subunit [Escherichia coli BW2952] gi|123454|sp|P28905|HOLC_ECOLI RecName: Full=DNA polymerase III subunit chi gi|34810156|pdb|1EM8|A Chain A, Crystal Structure Of Chi And Psi Subunit Heterodimer From Dna Pol Iii gi|34810158|pdb|1EM8|C Chain C, Crystal Structure Of Chi And Psi Subunit Heterodimer From Dna Pol Iii gi|41740|emb|CAA78524.1| DNA polymerase III holoenzyme chi subunit [Escherichia coli] gi|145537|gb|AAA70368.1| DNA polymerase III chi subunit [Escherichia coli] gi|537101|gb|AAA97156.1| DNA polymerase III chi subunit [Escherichia coli str. K-12 substr. MG1655] gi|1790709|gb|AAC77216.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. MG1655] gi|85677006|dbj|BAE78256.1| DNA polymerase III, chi subunit [Escherichia coli str. K12 substr. W3110] gi|169891533|gb|ACB05240.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860832|gb|ACR62830.1| DNA polymerase III, chi subunit [Escherichia coli BW2952] gi|260450921|gb|ACX41343.1| DNA-directed DNA polymerase [Escherichia coli DH1] gi|315138810|dbj|BAJ45969.1| DNA polymerase III subunit chi [Escherichia coli DH1] gi|742337|prf||2009369A DNA polymerase III:SUBUNIT=chi Length = 147 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|170683022|ref|YP_001746662.1| DNA polymerase III subunit chi [Escherichia coli SMS-3-5] gi|293407979|ref|ZP_06651819.1| DNA polymerase III subunit chi [Escherichia coli B354] gi|300935930|ref|ZP_07150884.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1] gi|301024408|ref|ZP_07188094.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1] gi|331665928|ref|ZP_08366822.1| DNA polymerase III subunit chi [Escherichia coli TA143] gi|331671400|ref|ZP_08372198.1| DNA polymerase III subunit chi [Escherichia coli TA280] gi|331681279|ref|ZP_08381916.1| DNA polymerase III subunit chi [Escherichia coli H299] gi|170520740|gb|ACB18918.1| DNA polymerase III, chi subunit [Escherichia coli SMS-3-5] gi|291472230|gb|EFF14712.1| DNA polymerase III subunit chi [Escherichia coli B354] gi|300396603|gb|EFJ80141.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1] gi|300458898|gb|EFK22391.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1] gi|331056979|gb|EGI28973.1| DNA polymerase III subunit chi [Escherichia coli TA143] gi|331071245|gb|EGI42602.1| DNA polymerase III subunit chi [Escherichia coli TA280] gi|331081500|gb|EGI52661.1| DNA polymerase III subunit chi [Escherichia coli H299] Length = 160 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 74 AESFVPHNL 82 >gi|322834558|ref|YP_004214585.1| DNA-directed DNA polymerase [Rahnella sp. Y9602] gi|321169759|gb|ADW75458.1| DNA-directed DNA polymerase [Rahnella sp. Y9602] Length = 161 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 19 VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 ++ + Y GKRV + C ++ + L+E LW + + F+PH + G+ F + PV L Sbjct: 27 LVAAERYRMGKRVLLACEDQKQAERLDEALWQREPNHFVPHNL-AGEGPRFGA--PVELC 83 Query: 79 ISSLNANTST---IRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 N I L + A ++E V F+ D L R +++ ++ G Sbjct: 84 WPGKRGNAPRDLLISLLPEFADFATA---FHEVVDFVPYEDSLKQL--ARERYKAYRSVG 138 Query: 136 YA 137 ++ Sbjct: 139 FS 140 >gi|330873096|gb|EGH07245.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963187|gb|EGH63447.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. actinidiae str. M302091] Length = 142 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G +V + C R+ L+ LW ++ + FLPHG D + D PV+L Sbjct: 24 LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-DAESDHD----APVVL-- 76 Query: 80 SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 L ++ T + L+ + I + +V ++ D L R +RS + GY P Sbjct: 77 -GLGDDSGTHQDLLVNLDLSIPAFFTRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134 >gi|254037281|ref|ZP_04871358.1| DNA polymerase III [Escherichia sp. 1_1_43] gi|226840387|gb|EEH72389.1| DNA polymerase III [Escherichia sp. 1_1_43] Length = 147 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLNAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 AESFVPHNL 69 >gi|289811597|ref|ZP_06542226.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 142 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 6 FYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 FY ND N L ++ + + GKRV + C E+ L+E LW + F+ Sbjct: 1 FYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARPAESFV 60 Query: 58 PHGV 61 PH + Sbjct: 61 PHNL 64 >gi|195432683|ref|XP_002064346.1| GK19748 [Drosophila willistoni] gi|194160431|gb|EDW75332.1| GK19748 [Drosophila willistoni] Length = 824 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 37 SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90 +E+ R SL + L +WK D L G +VG F ++Q + LT+++L T +R Sbjct: 95 TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLFDAYQQICLTLNALKLGTQFLR 149 >gi|195567038|ref|XP_002107082.1| GD17262 [Drosophila simulans] gi|194204479|gb|EDX18055.1| GD17262 [Drosophila simulans] Length = 204 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 37 SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90 +E+ R SL + L +WK D L G +VG + ++Q + LT+++L +T +R Sbjct: 95 TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149 >gi|237799871|ref|ZP_04588332.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022726|gb|EGI02783.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae str. 1_6] Length = 142 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G +V + C + R L+ LW +K + FLPHG D + D + + Sbjct: 24 LTEKAWRLGHKVYLHCSNAAQRTDLDARLWRFKGEVFLPHG-DAESDHDAA-------VV 75 Query: 80 SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 L ++ T + L+ ++I + + +V ++ D L R +RS + GY P Sbjct: 76 LGLGDDSGTHQDLLINLDLNIPAFFNRFARVAEVVVEDPAIRLA-ARESFRSYRERGYPP 134 >gi|227328318|ref|ZP_03832342.1| peptidase, M16 family protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 904 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNAN----TSTIRFLVDEASMHIGDVDYYEKVVF 111 FL HGVD DE + + V +T S AN ++ I L+ + + +GD D Y +++ Sbjct: 351 FLSHGVD--DE----TLELVKITALSSFANAHKTSAPIAGLLSNSHVLLGDADRYRQIIA 404 Query: 112 IINTDDQGSLEWGRAHW 128 II D S+ HW Sbjct: 405 IIKQADVDSVRQAAQHW 421 >gi|161729084|ref|NP_221220.2| DNA polymerase III subunit chi [Rickettsia prowazekii str. Madrid E] gi|292572538|gb|ADE30453.1| DNA polymerase III chi subunit HolC [Rickettsia prowazekii Rp22] Length = 154 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-H 99 ++ LN+ LWT+ + F+PHG + + QP+ +T N N +++ ++ + Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKFDPQ---PAKQPIYITDELQNPNNASVLVIISPTDIAK 98 Query: 100 IGDVDYYEKVV--FIINTD 116 I V Y KV II TD Sbjct: 99 ILQVKEYIKVFKRIIIITD 117 >gi|253991459|ref|YP_003042815.1| DNA polymerase III subunit chi [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782909|emb|CAQ86074.1| dna polymerase iii, chi subunit [Photorhabdus asymbiotica] Length = 158 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 23/39 (58%) Query: 23 DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 D++ GKRV + C ++ + L+E LW + F+PH + Sbjct: 40 DQWRAGKRVLIACEDQQQAEKLDEALWQREPHQFVPHNL 78 >gi|53718608|ref|YP_107594.1| DNA polymerase III subunit chi [Burkholderia pseudomallei K96243] gi|76810735|ref|YP_332588.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1710b] gi|126440549|ref|YP_001058066.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 668] gi|126454054|ref|YP_001065303.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1106a] gi|134281095|ref|ZP_01767804.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305] gi|167718525|ref|ZP_02401761.1| DNA polymerase III subunit chi [Burkholderia pseudomallei DM98] gi|167737557|ref|ZP_02410331.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 14] gi|167814691|ref|ZP_02446371.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 91] gi|167823145|ref|ZP_02454616.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 9] gi|167844709|ref|ZP_02470217.1| DNA polymerase III subunit chi [Burkholderia pseudomallei B7210] gi|167893244|ref|ZP_02480646.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 7894] gi|167901701|ref|ZP_02488906.1| DNA polymerase III subunit chi [Burkholderia pseudomallei NCTC 13177] gi|167909940|ref|ZP_02497031.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 112] gi|167917977|ref|ZP_02505068.1| DNA polymerase III subunit chi [Burkholderia pseudomallei BCC215] gi|217419436|ref|ZP_03450942.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576] gi|226194392|ref|ZP_03789990.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pakistan 9] gi|237811283|ref|YP_002895734.1| DNA polymerase III subunit chi [Burkholderia pseudomallei MSHR346] gi|242315240|ref|ZP_04814256.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b] gi|254181438|ref|ZP_04888035.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655] gi|254190837|ref|ZP_04897344.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pasteur 52237] gi|254196190|ref|ZP_04902614.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13] gi|254261707|ref|ZP_04952761.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a] gi|52209022|emb|CAH34962.1| putative DNA polymerase III chi subunit [Burkholderia pseudomallei K96243] gi|76580188|gb|ABA49663.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710b] gi|126220042|gb|ABN83548.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 668] gi|126227696|gb|ABN91236.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106a] gi|134247401|gb|EBA47486.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305] gi|157938512|gb|EDO94182.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pasteur 52237] gi|169652933|gb|EDS85626.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13] gi|184211976|gb|EDU09019.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655] gi|217396740|gb|EEC36756.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576] gi|225933477|gb|EEH29466.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pakistan 9] gi|237504050|gb|ACQ96368.1| DNA polymerase III subunit chi [Burkholderia pseudomallei MSHR346] gi|242138479|gb|EES24881.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b] gi|254220396|gb|EET09780.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a] Length = 138 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 LL+ Y+ G+ V V R+R +L+E LWT+ F+PH + ++ P++LT Sbjct: 20 LLRKAYQAGQPVVVCAEPARLR-ALDERLWTFSPLDFIPH---CAIDNAHAASTPIVLT 74 >gi|6831725|sp|Q9ZC94|Y872_RICPR RecName: Full=Uncharacterized protein RP872 gi|3861397|emb|CAA15296.1| unknown [Rickettsia prowazekii] Length = 165 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-H 99 ++ LN+ LWT+ + F+PHG + + QP+ +T N N +++ ++ + Sbjct: 53 QEMLNKNLWTYSRKQFIPHGSKFDPQ---PAKQPIYITDELQNPNNASVLVIISPTDIAK 109 Query: 100 IGDVDYYEKVV--FIINTD 116 I V Y KV II TD Sbjct: 110 ILQVKEYIKVFKRIIIITD 128 >gi|83721052|ref|YP_441380.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264] gi|167618245|ref|ZP_02386876.1| DNA polymerase III subunit chi [Burkholderia thailandensis Bt4] gi|257139947|ref|ZP_05588209.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264] gi|83654877|gb|ABC38940.1| DNA polymerase III, chi subunit, putative [Burkholderia thailandensis E264] Length = 138 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 LL+ Y+ G+ V V R+R +L+E LWT+ F+PH + ++ P++LT Sbjct: 20 LLRKAYQAGQPVVVCAEPARLR-ALDERLWTFSPLDFIPH---CAVDNAHAASTPIVLT 74 >gi|320329801|gb|EFW85789.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea str. race 4] gi|330874248|gb|EGH08397.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea str. race 4] Length = 142 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G +V + C R+ L+ LW ++ + FLPHG + + S PV+L Sbjct: 24 LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-----DAESDSNAPVVL-- 76 Query: 80 SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 L ++ L+ + I + +V ++ D L R +RS + GY P Sbjct: 77 -GLGDDSGAHEDLLVNLDLSIPTFFKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134 >gi|145629512|ref|ZP_01785310.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21] gi|145639006|ref|ZP_01794614.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII] gi|144978355|gb|EDJ88119.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21] gi|145271978|gb|EDK11887.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII] gi|309750966|gb|ADO80950.1| DNA polymerase III, chi subunit [Haemophilus influenzae R2866] Length = 144 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 7/113 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GK+V + C SE ++E LW + F+PH + G+ + + P + IS L Sbjct: 30 WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84 Query: 85 NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 R ++ I D + + +++ + DD + R ++ L+ G+ Sbjct: 85 RNLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRQQGW 136 >gi|77361340|ref|YP_340915.1| DNA polymerase III subunit chi [Pseudoalteromonas haloplanktis TAC125] gi|76876251|emb|CAI87473.1| DNA polymerase III, chi subunit [Pseudoalteromonas haloplanktis TAC125] Length = 148 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 24/42 (57%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + D+Y G+RV + +E +++E LW + D F+PH + Sbjct: 30 IAADQYRLGQRVFICVDNENTAFAIDETLWAFDPDSFVPHNL 71 >gi|149927921|ref|ZP_01916171.1| DNA polymerase III subunit chi [Limnobacter sp. MED105] gi|149823360|gb|EDM82593.1| DNA polymerase III subunit chi [Limnobacter sp. MED105] Length = 140 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L++ Y G ++ V ++L++ LWT+ ++ FLPH V G G + P++LT Sbjct: 20 LIRKAYGSGLKIVCYSTRPEVLENLDKLLWTFSEEDFLPHVVS-GHPG--VADTPIVLTD 76 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + + + +DE +E++V I+ TD+ R ++ K GY Sbjct: 77 KADDIAHYDLLINLDEQWPPF--FARFERLVEIVGTDEDNK-ALARQRYKFYKERGYP 131 >gi|307824331|ref|ZP_07654557.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum SV96] gi|307734711|gb|EFO05562.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum SV96] Length = 160 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 16/130 (12%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS--------- 70 L++ Y G V S ++++ LWT++ F+PH + G+ D + Sbjct: 24 LIEKAYRSGSFCYVLTDSAEQSRTIDDLLWTFRAGSFIPHQIYTGEPPDIARDGVYAAGS 83 Query: 71 -----SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGR 125 + + V+L I SL+A + L + +S + E+++ I++ + + + E GR Sbjct: 84 PGASAATEKVIL-IGSLDAPEHWQKVLFNLSSRYPDVGPQTERILEILD-NSETTKEAGR 141 Query: 126 AHWRSLKNSG 135 +R + SG Sbjct: 142 NRYRRYQQSG 151 >gi|71734138|ref|YP_273423.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554691|gb|AAZ33902.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|330890528|gb|EGH23189.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. mori str. 301020] Length = 142 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G +V + C R+ L+ LW ++ + FLPHG + + S PV+L + Sbjct: 24 LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-----DAESDSDAPVVLGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 + + +D + + +V ++ D L R +RS + GY P Sbjct: 79 GDDSGAHEDLLVNLDLSIPAF--FKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134 >gi|170723399|ref|YP_001751087.1| DNA polymerase III subunit chi [Pseudomonas putida W619] gi|169761402|gb|ACA74718.1| DNA-directed DNA polymerase [Pseudomonas putida W619] Length = 142 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G RV + C R L++ LW +K + F+PH D + Sbjct: 24 LCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAFVPH--------DLAEAHADATVA 75 Query: 80 SSLNANTSTIR-FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 L N R L++ + G V +E+V I+ + + R +R + GYA Sbjct: 76 LGLADNAGEHRDLLINLGADVPGFVGQFERVAEIV-VEQADIRQSARERFRFYREQGYA 133 >gi|126208969|ref|YP_001054194.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae L20] gi|126097761|gb|ABN74589.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 145 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Query: 1 MRTLLFYRFKNDWEYNLLV-------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY NL L + + GKRV + C +E+ +++E LW Sbjct: 1 MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGV 61 D F+PH + Sbjct: 61 DSFVPHNL 68 >gi|67459767|ref|YP_247391.1| DNA polymerase III subunit chi [Rickettsia felis URRWXCal2] gi|67005300|gb|AAY62226.1| unknown [Rickettsia felis URRWXCal2] Length = 154 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI 100 ++ LN+ LWT+ + F+PHG + + + QP+ +T N N +++ ++ + I Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII--SPTDI 96 Query: 101 GDV 103 G + Sbjct: 97 GKI 99 >gi|320322890|gb|EFW78981.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea str. B076] Length = 142 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L + + G +V + C R+ L+ LW ++ + FLPHG + + S PV+L + Sbjct: 24 LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-----DAESDSDAPVVLGL 78 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 + + +D + + +V ++ D L R +RS + GY P Sbjct: 79 GDDSGAHEDLLVNLDLSIPTF--FKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134 >gi|165976934|ref|YP_001652527.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150834|ref|YP_001969359.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253014|ref|ZP_07339168.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248547|ref|ZP_07530563.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307264184|ref|ZP_07545776.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165877035|gb|ABY70083.1| DNA polymerase III chi subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915965|gb|ACE62217.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648146|gb|EFL78348.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854942|gb|EFM87129.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870475|gb|EFN02227.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 145 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Query: 1 MRTLLFYRFKNDWEYNLLV-------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY NL L + + GKRV + C +E+ +++E LW Sbjct: 1 MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGV 61 D F+PH + Sbjct: 61 DSFVPHNL 68 >gi|157829183|ref|YP_001495425.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933911|ref|YP_001650700.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. Iowa] gi|157801664|gb|ABV76917.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908998|gb|ABY73294.1| DNA polymerase III, chi subunit [Rickettsia rickettsii str. Iowa] Length = 154 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV 93 ++ LN+ LWT+ + F+PHG + + + QP+ +T N N +++ ++ Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII 91 >gi|71280374|ref|YP_267489.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H] gi|71146114|gb|AAZ26587.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H] Length = 157 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 13/82 (15%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGDFSSFQ 73 Y + +RV + ++ + ++E LW + D F+PH V++G + + Sbjct: 38 YRQNQRVYIYAKDQQHAEQIDEMLWAFDSDSFVPHNLVGEGPKQGAMVEIGYQAP-QGRR 96 Query: 74 PVLLTISSLNAN-TSTIRFLVD 94 PVL+ ++S N + +F+VD Sbjct: 97 PVLINLNSAVPNFANQFQFIVD 118 >gi|68250085|ref|YP_249197.1| DNA polymerase III subunit chi [Haemophilus influenzae 86-028NP] gi|145632853|ref|ZP_01788586.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655] gi|229846748|ref|ZP_04466855.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1] gi|68058284|gb|AAX88537.1| DNA polymerase III, chi subunit [Haemophilus influenzae 86-028NP] gi|144986509|gb|EDJ93075.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655] gi|229810237|gb|EEP45956.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1] Length = 144 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GK+V + C SE ++E LW + F+PH + G+ + + P + IS L Sbjct: 30 WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84 Query: 85 NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 R L+ I D + + +++ + DD + R ++ L+ G+ Sbjct: 85 RNLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136 >gi|229844141|ref|ZP_04464282.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1] gi|229813135|gb|EEP48823.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1] Length = 144 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GK+V + C SE ++E LW + F+PH + G+ + + P + IS L Sbjct: 30 WHSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84 Query: 85 NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 R L+ I D + + +++ + DD + R ++ L+ G+ Sbjct: 85 RNLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136 >gi|157965013|ref|YP_001499837.1| DNA polymerase III subunit chi [Rickettsia massiliae MTU5] gi|157844789|gb|ABV85290.1| DNA polymerase III chi subunit HolC [Rickettsia massiliae MTU5] Length = 156 Score = 34.3 bits (77), Expect = 6.7, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV 93 ++ LN+ LWT+ + F+PHG + + + QP+ +T N N +++ ++ Sbjct: 44 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII 93 >gi|16273306|ref|NP_439550.1| DNA polymerase III subunit chi [Haemophilus influenzae Rd KW20] gi|260580767|ref|ZP_05848593.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae RdAW] gi|1170335|sp|P43749|HOLC_HAEIN RecName: Full=DNA polymerase III subunit chi gi|1574233|gb|AAC23044.1| DNA polymerase III, chi subunit (holC) [Haemophilus influenzae Rd KW20] gi|260092584|gb|EEW76521.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae RdAW] Length = 144 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GK+V + C SE ++E LW + F+PH + G+ + + P + IS L Sbjct: 30 WRSGKKVLISCESEAQALEIDERLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84 Query: 85 NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 R L+ I D + + +++ + DD + R ++ L+ G+ Sbjct: 85 RNLQRRDLLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136 >gi|15893269|ref|NP_360983.1| DNA polymerase III subunit chi [Rickettsia conorii str. Malish 7] gi|34581064|ref|ZP_00142544.1| hypothetical protein [Rickettsia sibirica 246] gi|229587243|ref|YP_002845744.1| DNA polymerase III subunit chi [Rickettsia africae ESF-5] gi|238651118|ref|YP_002916976.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic] gi|15620489|gb|AAL03884.1| unknown [Rickettsia conorii str. Malish 7] gi|28262449|gb|EAA25953.1| unknown [Rickettsia sibirica 246] gi|228022293|gb|ACP54001.1| DNA polymerase III chi subunit HolC [Rickettsia africae ESF-5] gi|238625216|gb|ACR47922.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic] Length = 154 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV 93 ++ LN+ LWT+ + F+PHG + + + QP+ +T N N +++ ++ Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII 91 >gi|194894024|ref|XP_001977991.1| GG17939 [Drosophila erecta] gi|190649640|gb|EDV46918.1| GG17939 [Drosophila erecta] Length = 816 Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 37 SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90 +E+ R SL + L +WK D L G +VG + ++Q + LT+++L +T +R Sbjct: 95 TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149 >gi|51474041|ref|YP_067798.1| DNA polymerase III subunit chi [Rickettsia typhi str. Wilmington] gi|51460353|gb|AAU04316.1| probable DNA-directed DNA polymerase III chi subunit HolC [Rickettsia typhi str. Wilmington] Length = 154 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMH- 99 ++ LN+ LWT+ + F+PHG + + QP+ +T N N +++ ++ + Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKFDPQ---PTKQPIYITDELQNPNNASVLIIISPTDIEK 98 Query: 100 IGDVDYYEKVV--FIINTD 116 I V Y +V II TD Sbjct: 99 ILQVKEYIRVFKRIIIITD 117 >gi|18859957|ref|NP_573099.1| CG8939 [Drosophila melanogaster] gi|7293173|gb|AAF48557.1| CG8939 [Drosophila melanogaster] gi|17862372|gb|AAL39663.1| LD23718p [Drosophila melanogaster] gi|220944838|gb|ACL84962.1| CG8939-PA [synthetic construct] Length = 817 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 37 SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90 +E+ R SL + L +WK D L G +VG + ++Q + LT+++L +T +R Sbjct: 95 TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149 >gi|195357054|ref|XP_002044929.1| GM11680 [Drosophila sechellia] gi|194124271|gb|EDW46314.1| GM11680 [Drosophila sechellia] Length = 817 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 37 SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90 +E+ R SL + L +WK D L G +VG + ++Q + LT+++L +T +R Sbjct: 95 TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149 >gi|32034863|ref|ZP_00134969.1| COG2927: DNA polymerase III, chi subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 123 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 24/42 (57%) Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 L + + GKRV + C +E+ +++E LW D F+PH + Sbjct: 5 LAANAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNL 46 >gi|319897049|ref|YP_004135244.1| DNA polymerase iii, chi subunit [Haemophilus influenzae F3031] gi|329123469|ref|ZP_08252033.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius ATCC 11116] gi|317432553|emb|CBY80913.1| DNA polymerase III, chi subunit [Haemophilus influenzae F3031] gi|327471051|gb|EGF16506.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius ATCC 11116] Length = 144 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GK+V + C SE ++E LW + F+PH + G+ + + P + IS L Sbjct: 30 WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84 Query: 85 NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 R ++ I D + + +++ + DD + R ++ L+ G+A Sbjct: 85 RNLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDDALKTQ-ARERYKQLRALGWA 137 >gi|195133724|ref|XP_002011289.1| GI16447 [Drosophila mojavensis] gi|193907264|gb|EDW06131.1| GI16447 [Drosophila mojavensis] Length = 826 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 37 SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90 +E+ R SL + L +WK D L G +VG + ++Q + LT+++L T +R Sbjct: 95 TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLGTQFLR 149 >gi|315617672|gb|EFU98278.1| DNA polymerase III subunit chi [Escherichia coli 3431] Length = 147 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND + L ++ + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAYRLDEALWARP 60 Query: 53 KDGFLPHGV 61 + F+PH + Sbjct: 61 VESFVPHNL 69 >gi|148826880|ref|YP_001291633.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG] gi|148718122|gb|ABQ99249.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG] Length = 144 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 7/113 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GK+V + C SE ++E LW + F+PH + G+ + + P + IS L Sbjct: 30 WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84 Query: 85 NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 R ++ I D + + +++ + DD + R ++ L+ G+ Sbjct: 85 RNLQRRDMLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136 Searching..................................................done Results from round 2 >gi|260426697|ref|ZP_05780676.1| DNA polymerase III subunit chi [Citreicella sp. SE45] gi|260421189|gb|EEX14440.1| DNA polymerase III subunit chi [Citreicella sp. SE45] Length = 152 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL+ G RV V+ S D L++ LW ++GFLPH Sbjct: 1 MGAAYFYHLTQRPLEATLPVLLEKSLSAGWRVVVRGTSPGRMDWLDQRLWLGPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + N ++ VD A + +V E+V + + D Sbjct: 61 GLS---GGPHDALQPVLLTTGAAMPNDASCLMAVDGAEVSPEEVGKLERVCILFDGHDHE 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R WR+L +G A Sbjct: 118 ALQAARGQWRALTGAGCAAQ 137 >gi|241203952|ref|YP_002975048.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857842|gb|ACS55509.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 149 Score = 203 bits (517), Expect = 6e-51, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+++LWT++++ FLPH Sbjct: 1 MTDVLFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPAD--AYERIVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKKLKGEGHN 133 >gi|327188013|gb|EGE55243.1| DNA polymerase III subunit chi [Rhizobium etli CNPAF512] Length = 149 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT+++D FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKRLKGEGHN 133 >gi|116251338|ref|YP_767176.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. viciae 3841] gi|115255986|emb|CAK07067.1| putative DNA polymerase III subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 149 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L L+ E+G RV+VQ RD+L+++LWT++++ FLPH Sbjct: 1 MTDVLFYHLTESRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPAD--AYERIVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L+ RA W+ LK G+ Sbjct: 116 QLDTARAQWKKLKGEGHN 133 >gi|227821478|ref|YP_002825448.1| DNA polymerase III subunit chi [Sinorhizobium fredii NGR234] gi|227340477|gb|ACP24695.1| DNA polymerase III, chi subunit protein [Sinorhizobium fredii NGR234] Length = 149 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTADAERRDALDTHLWIYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D G+F++ QP+L+ N N +T+RFLVD A + YE+VVF+ + DQ Sbjct: 61 GT---DAGEFAAEQPILIVAGDGNQNGATVRFLVDGAEPPP--LSDYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE R W+ LK G+ Sbjct: 116 QLESARGQWKRLKGEGH 132 >gi|190891139|ref|YP_001977681.1| DNA polymerase III protein, chi subunit [Rhizobium etli CIAT 652] gi|190696418|gb|ACE90503.1| probable DNA polymerase III protein, chi subunit [Rhizobium etli CIAT 652] Length = 149 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKRLKGEGHN 133 >gi|209548674|ref|YP_002280591.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534430|gb|ACI54365.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 149 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDVLFYHLTETKLEDALPPLIDKSVERGWRVAVQTREAARRDALDAHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DEGDF+ QPVLLT++S NAN +T+RF++D A +D YE+VVF+ + DQ Sbjct: 61 GT---DEGDFAENQPVLLTVTSGNANAATVRFIIDGAEPPP--LDAYERVVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKKLKGEGHN 133 >gi|218459999|ref|ZP_03500090.1| DNA polymerase III subunit chi [Rhizobium etli Kim 5] Length = 149 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETKLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTFREETFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAENQPVLLTVTPDNANAATVRFIVDGAEPPPAD--SYERIVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ LK G+ Sbjct: 116 QLEAARAQWKRLKGEGHN 133 >gi|86357095|ref|YP_468987.1| DNA polymerase III subunit chi [Rhizobium etli CFN 42] gi|86281197|gb|ABC90260.1| putative DNA polymerase III, chi subunit protein [Rhizobium etli CFN 42] Length = 149 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL E+G RV VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLLDKSIERGWRVVVQTSEAARRDALDAHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D DF+ QPVLLT++S NAN +T+RF+VD A D YE+VVF+ + DQ Sbjct: 61 GT---DTADFAENQPVLLTVTSDNANAATVRFIVDGAEPPPAD--AYERVVFMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ L+ G+ Sbjct: 116 QLEAARAQWKKLRGEGHN 133 >gi|218509824|ref|ZP_03507702.1| DNA polymerase III subunit chi [Rhizobium etli Brasil 5] Length = 149 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 60/138 (43%), Positives = 82/138 (59%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT+++D FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W LK G+ Sbjct: 116 QLEAARAQWNRLKGEGHN 133 >gi|325292489|ref|YP_004278353.1| DNA polymerase III chi subunit [Agrobacterium sp. H13-3] gi|325060342|gb|ADY64033.1| putative DNA polymerase III chi subunit [Agrobacterium sp. H13-3] Length = 149 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G +V++Q E RD L+ +LWT++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDEERRDFLDTHLWTFRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D QP+LLT S+ N N +++RFLVD A V+ YE++VF+ + D Sbjct: 61 ATDTSA---APQNQPILLTASNANGNEASVRFLVDGAE--PPAVEGYERIVFMFDGYDAY 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R HW+ LK G+A Sbjct: 116 QLEMARNHWKRLKTEGHA 133 >gi|260433489|ref|ZP_05787460.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis ITI-1157] gi|260417317|gb|EEX10576.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis ITI-1157] Length = 153 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY ++ E+ L VLL + G R++V+ D L+E LW ++ FLPH Sbjct: 1 MGAVYFYHLTRHPLEHTLPVLLDKARQAGWRIAVRGTDPARMDWLDERLWLGPEESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + QP+LLT AN VD A + +V E+V + + +D Sbjct: 61 GRA---GGPHDAMQPILLTTGPEAANDPACLMAVDGAEVAADEVTALERVCILFDGNDPQ 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R W++L +G A Sbjct: 118 ALDHARGQWKALTAAGCAAQ 137 >gi|159184617|ref|NP_354131.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58] gi|159139915|gb|AAK86916.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58] Length = 149 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G +V++Q + RD L+ +LWT++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDDERRDFLDTHLWTFRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D QP+LLT SS N N + +RFLVD A V+ YE+VVF+ + D Sbjct: 61 ATDASS---APQNQPILLTASSENGNAANVRFLVDGAEPLA--VETYERVVFMFDGYDAY 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R HW++LK G++ Sbjct: 116 QLEMARNHWKTLKAEGHS 133 >gi|150395991|ref|YP_001326458.1| DNA polymerase III subunit chi [Sinorhizobium medicae WSM419] gi|150027506|gb|ABR59623.1| DNA polymerase III chi subunit HolC [Sinorhizobium medicae WSM419] Length = 149 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEVLFYHLTESKLEDALPPLLDKSIERGWRVVVQTVDAERRDALDTHLWVYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D GDF++ QP+L+ N N +T+RFLVD A V YE+VVF+ + DQ Sbjct: 61 GT---DAGDFATEQPILVVADHGNQNAATVRFLVDGAEPPP--VSDYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L+ R W+ LK G+ Sbjct: 116 QLDAARDQWKRLKGEGHN 133 >gi|307317714|ref|ZP_07597152.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83] gi|306896476|gb|EFN27224.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83] Length = 149 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D G+F++ QP+L+ N N +T+RF+VD A V YE+VVF+ + DQ Sbjct: 61 GT---DAGEFAAEQPILVVADDGNRNAATVRFVVDGAEPPP--VSEYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R W+ LK G+ Sbjct: 116 QLEAARDQWKRLKGEGHN 133 >gi|15964909|ref|NP_385262.1| DNA polymerase III subunit chi [Sinorhizobium meliloti 1021] gi|307300979|ref|ZP_07580748.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C] gi|15074088|emb|CAC45735.1| Putative DNA polymerase III chi subunit [Sinorhizobium meliloti 1021] gi|306903934|gb|EFN34520.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C] Length = 149 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL E+G RV VQ RD+L+ +LW ++ D FLPH Sbjct: 1 MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D G+F++ QP+L+ N N +T+RF+VD A V YE+VVF+ + DQ Sbjct: 61 GT---DAGEFAAVQPILVVADDGNRNAATVRFVVDGAEPPP--VSEYERVVFMFDGYDQQ 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R W+ LK G+ Sbjct: 116 QLEAARDQWKRLKGEGHN 133 >gi|222085456|ref|YP_002543986.1| DNA polymerase III [Agrobacterium radiobacter K84] gi|221722904|gb|ACM26060.1| DNA polymerase III [Agrobacterium radiobacter K84] Length = 149 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L L+ E+G +V++Q + RD+L+ +LWT+++D FLPH Sbjct: 1 MTDVLFYHLTESKLEDALPPLIDKSVERGWQVAIQTREQARRDALDTHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE + + QPVLLT+S N N +++RF +D A D+D Y++VVFI + DQ Sbjct: 61 GT---DESEMADRQPVLLTVSPDNLNNASVRFFIDGAE--ASDIDTYQRVVFIFDGYDQE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ LK G+ Sbjct: 116 QLEGARAQWKKLKGEGHN 133 >gi|56697303|ref|YP_167669.1| DNA polymerase III subunit chi [Ruegeria pomeroyi DSS-3] gi|56679040|gb|AAV95706.1| DNA polymerase III, chi subunit, putative [Ruegeria pomeroyi DSS-3] Length = 154 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY +N E L VLL G RV+V+ L+E LW DGFLPH Sbjct: 1 MGAAYFYHLTRNPLEATLPVLLTKALGAGWRVAVRGSDPGRLVWLDEKLWLGPDDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + N + VD A++ +V E+V + + D Sbjct: 61 GLA---GGAHDADQPVLLTTGADAPNGARCVMSVDGAAVTPEEVAALERVCILFDGTDPA 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 ++E R WR+L +G A Sbjct: 118 AVEAARGQWRALTAAGCAAQ 137 >gi|220925407|ref|YP_002500709.1| DNA polymerase III subunit chi HolC [Methylobacterium nodulans ORS 2060] gi|219950014|gb|ACL60406.1| DNA polymerase III chi subunit HolC [Methylobacterium nodulans ORS 2060] Length = 150 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+ RV++Q SE +L+++LWT+ + FLPH Sbjct: 1 MTEILFYHMQRQPLESVLPSLLEKSLERRWRVAIQATSEERLQALDDHLWTFSDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + QPV+LT+ N N ++IRFLVD A + D Y ++ + + DQ Sbjct: 61 GT---DREPDPATQPVVLTLREANPNGASIRFLVDGAPL-PEDAGSYARICILFDGTDQD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L + R WR+ K +G++ Sbjct: 117 ALLFAREQWRAAKGAGHS 134 >gi|209885472|ref|YP_002289329.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5] gi|209873668|gb|ACI93464.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5] Length = 154 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 81/138 (58%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L L++ E+G RV VQ GSE ++L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQDMRLEAVLPPLIEKSLERGWRVVVQAGSEERAEALDSHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ QPV+LT+ N N +T+RFLVD A++ D Y+++V I + DD G Sbjct: 61 GTWRESD---AAEQPVVLTVRDDNPNDATVRFLVDGATV-PEDCTAYQRIVLIFDGDDDG 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L+ RA W K GY Sbjct: 117 ALQAARAAWTDCKARGYE 134 >gi|149201831|ref|ZP_01878805.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035] gi|149144879|gb|EDM32908.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035] Length = 152 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +LL+ G RV V+ L+E LW +DGFLPH Sbjct: 1 MGAVYFYHLTRQPLEATLPMLLEKSLGAGWRVVVRGREAARLVWLDERLWLGPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 GV G + QPVLLT N + +D A + +V ++V + + +D Sbjct: 61 GVA---GGAHDADQPVLLTTDHARPNGAACVMAIDGADVSGEEVQSLQRVCILFDGNDDA 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W++L +G A Sbjct: 118 AVQVARGQWKALTGAGCAAQ 137 >gi|254510554|ref|ZP_05122621.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11] gi|221534265|gb|EEE37253.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11] Length = 152 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L VLL + G R++V+ D L+E LW ++GFLPH Sbjct: 1 MGAVYFYHLTRQPLERTLPVLLDKARQAGWRIAVRGTDPARMDWLDEKLWLGPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + QPVLLT AN++ VD A + +V E+V + + D Sbjct: 61 GRA---GGPHDAAQPVLLTTGPEAANSAACVMAVDGAPVEADEVTALERVCILFDGTDPD 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W++L +G + Sbjct: 118 AVQRARGQWKALTGAGCSAQ 137 >gi|259419117|ref|ZP_05743034.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B] gi|259345339|gb|EEW57193.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B] Length = 154 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + + L VLL G R++V+ L++ LW FLPH Sbjct: 1 MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLGGDATFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G QP+LLT S+ N +T VD A + +V E+V + + D Sbjct: 61 GLA---GGPHDKLQPILLTTSADAPNDATCVMSVDGAEVTPEEVSALERVCILFDGTDPD 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W++L +G A Sbjct: 118 AVQQARGQWKALTAAGCAAQ 137 >gi|154253773|ref|YP_001414597.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans DS-1] gi|154157723|gb|ABS64940.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans DS-1] Length = 149 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ E+G R V+ G D+LN LWT+ D FLPH Sbjct: 1 MTEVLFYHLQNAPLEQVLPQLLERSLERGWRAIVRAGGPERLDALNNVLWTYSDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ +PV LT+ N N + + FLVD A+ G++ YE+ V + + D+ Sbjct: 61 GTL---DDGPAALEPVFLTVDDENPNNANVLFLVDGAA--PGNIGPYERCVLMFDGRDEA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 +L R HW++LK G+ Sbjct: 116 ALAAAREHWKTLKAEGH 132 >gi|170743501|ref|YP_001772156.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46] gi|168197775|gb|ACA19722.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46] Length = 150 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+ RV VQ SE +L+++LWT+ ++ FLPH Sbjct: 1 MTEILFYHMQRQPLESVLPNLLEKSLERRWRVVVQAASEERLAALDDHLWTFSEESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + QPV+LT+ N N +TIRFLV+ A++ D YE++ + + DQ Sbjct: 61 GT---DREPDAGTQPVVLTLRDANPNGATIRFLVEGAAL-PADAGRYERICVLFDGSDQE 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR+ K +G++ Sbjct: 117 ALLLAREQWRAAKEAGHS 134 >gi|158422164|ref|YP_001523456.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571] gi|158329053|dbj|BAF86538.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571] Length = 149 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 72/138 (52%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L VLL+ E+G R VQ GS RD+L+ +LWT+ FLPH Sbjct: 1 MTEVLFYHLERRPLEDALPVLLEKSLERGWRCVVQAGSPERRDALDAHLWTYNDASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D QPVLLT+ N N + +RFLVD A I D Y +VV + + D+ Sbjct: 61 GTDAQPR---PERQPVLLTLDEANPNDAQVRFLVDGA--RIADASPYVRVVHMFDGRDET 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R WR K +G+ Sbjct: 116 AVAAARERWREAKAAGHT 133 >gi|149914660|ref|ZP_01903190.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b] gi|149811453|gb|EDM71288.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b] Length = 152 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY ++ E L +LL ++ G RV V+ + L+E LW ++GFLPH Sbjct: 1 MGAAFFYHLTRHPLETTLPMLLGKAHQAGWRVIVRGHDPVRIEWLDERLWLGPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ + QPVLLT+S N + VD A + +V E+V + + D Sbjct: 61 GLAGR---PHEADQPVLLTVSEEIPNGALCLMAVDGAEVAPDEVSRLERVCILFDGHDDA 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R W++L ++G A Sbjct: 118 ALQKARGQWKALTSAGCAAQ 137 >gi|239831523|ref|ZP_04679852.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301] gi|239823790|gb|EEQ95358.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301] Length = 149 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV++Q SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLARGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT S N N +T+RFLV+ A + D YE++V + + DQ Sbjct: 61 GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLEQAD--AYERLVVMFDGHDQE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W+S K + Sbjct: 116 QLDIARGQWKSFKAENH 132 >gi|99080792|ref|YP_612946.1| DNA polymerase III subunit chi [Ruegeria sp. TM1040] gi|99037072|gb|ABF63684.1| DNA polymerase III chi subunit HolC [Ruegeria sp. TM1040] Length = 154 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + + L VLL G R++V+ L++ LW FLPH Sbjct: 1 MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLAGDASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LLT +S AN + VD A + +VD E+V + + D Sbjct: 61 GIA---GGPHDALQPILLTTASEAANGADCVMSVDGAEVQPDEVDALERVCILFDGTDPE 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W++L +G Sbjct: 118 AVQHARGQWKNLTAAGCLAQ 137 >gi|39936122|ref|NP_948398.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris CGA009] gi|192291840|ref|YP_001992445.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris TIE-1] gi|39649976|emb|CAE28500.1| hypothetical protein RPA3059 [Rhodopseudomonas palustris CGA009] gi|192285589|gb|ACF01970.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris TIE-1] Length = 150 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDSHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + ++ QP+LLT N N + +RFLVD A++ D YE++V + N DD Sbjct: 61 ATWRVAD---AAHQPILLTTGEGNPNGAKVRFLVDNAAL-PEDSGSYERMVLLFNGDDDE 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W+ K + Sbjct: 117 AVAMARDAWKQCKAKAFE 134 >gi|163854052|ref|YP_001642095.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens PA1] gi|218532995|ref|YP_002423811.1| DNA polymerase III chi subunit HolC [Methylobacterium chloromethanicum CM4] gi|254564020|ref|YP_003071115.1| hypothetical protein METDI5706 [Methylobacterium extorquens DM4] gi|163665657|gb|ABY33024.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens PA1] gi|218525298|gb|ACK85883.1| DNA polymerase III chi subunit HolC [Methylobacterium chloromethanicum CM4] gi|254271298|emb|CAX27310.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 150 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L++ E+G + ++Q SE +L++ LWT+ + FLPH Sbjct: 1 MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D ++ QPV+LT+ N N ++IRFLV+ A + D + Y+++ + + D Sbjct: 61 GT---DRDTDAASQPVVLTLRETNPNGASIRFLVEGAEL-PEDAESYQRICILFDGTDTD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR K +G+A Sbjct: 117 ALLHAREQWRGAKAAGHA 134 >gi|240141506|ref|YP_002965986.1| hypothetical protein MexAM1_META1p5105 [Methylobacterium extorquens AM1] gi|240011483|gb|ACS42709.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 150 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L++ E+G + ++Q SE +L++ LWT+ + FLPH Sbjct: 1 MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D ++ QPV+LT+ N N ++IRFLV+ A + D + Y+++ + + D Sbjct: 61 GT---DRDTDAARQPVVLTLRETNPNGASIRFLVEGAEL-PEDAESYQRICILFDGTDTD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR K +G+A Sbjct: 117 ALLHAREQWRGAKAAGHA 134 >gi|85706344|ref|ZP_01037438.1| DNA polymerase III subunit chi [Roseovarius sp. 217] gi|85669117|gb|EAQ23984.1| DNA polymerase III subunit chi [Roseovarius sp. 217] Length = 152 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L +LL+ G RV V+ L+E LW +DGFLPH Sbjct: 1 MGAAYFYHLTRQPLEATLPMLLEKSLSVGWRVVVRGRDRARMVWLDERLWLGPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT S N + +D A + +V ++V + + +D Sbjct: 61 GLS---GGPQDADQPVLLTTESARPNGAVCLMAIDAAEVSAQEVQMLDRVCILFDGNDDA 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W++L +G Sbjct: 118 AVQAARGQWKTLTGAGCTAQ 137 >gi|260466944|ref|ZP_05813126.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum WSM2075] gi|259029241|gb|EEW30535.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum WSM2075] Length = 149 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ ++G R VQ G++ RD+L+++LWT++ D FL H Sbjct: 1 MAEVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTDERRDALDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D + QPVLLT N N + IRFLVD A+ D+ YE+ VF+ + D Sbjct: 61 AT---DREAYPGEQPVLLTTGDGNPNEAKIRFLVDGAA--PPDLSGYERAVFLFDGHDAA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ RAHW+++K++G++ Sbjct: 116 QVDAARAHWKTMKDAGHS 133 >gi|110634106|ref|YP_674314.1| DNA polymerase III subunit chi [Mesorhizobium sp. BNC1] gi|110285090|gb|ABG63149.1| DNA polymerase III, chi subunit [Chelativorans sp. BNC1] Length = 172 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 6/135 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 +LFY ++ E L L++ E+G RV +Q SE RD+L+ LWT++ D F+PH Sbjct: 17 EVLFYHLTESTLEEALPPLVEKSLERGWRVGIQTASEERRDALDACLWTFRDDSFVPHAT 76 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 D ++ QPV+LT + N N ++IRFLV+ A G +D Y++ VF+ + D L Sbjct: 77 ---DREPHAAEQPVILTTAPANPNGASIRFLVEGAE--PGSLDGYQRAVFLFDGHDTSQL 131 Query: 122 EWGRAHWRSLKNSGY 136 + RAHW+++K +G+ Sbjct: 132 DAARAHWKAMKAAGH 146 >gi|319784421|ref|YP_004143897.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170309|gb|ADV13847.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 149 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ ++G R VQ G+E RD+L+++LWT++ D FL H Sbjct: 1 MADVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D QP+LLT N N + IRFLVD A D+ YE+ VF+ + D Sbjct: 61 AT---DREAHPGEQPILLTTGDGNPNDAKIRFLVDGA--VPPDLGGYERAVFLFDGHDAA 115 Query: 120 SLEWGRAHWRSLKNSGY 136 LE R HW+ +K++G+ Sbjct: 116 QLEAARGHWKVMKSAGH 132 >gi|306838748|ref|ZP_07471582.1| DNA polymerase III subunit chi [Brucella sp. NF 2653] gi|306842044|ref|ZP_07474717.1| DNA polymerase III subunit chi [Brucella sp. BO2] gi|306287885|gb|EFM59305.1| DNA polymerase III subunit chi [Brucella sp. BO2] gi|306406150|gb|EFM62395.1| DNA polymerase III subunit chi [Brucella sp. NF 2653] Length = 165 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 17 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT + N N +T+RFLV+ A + YE++V + + DQ Sbjct: 77 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 131 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 132 QLDIARTQWKAFKAENH 148 >gi|17987543|ref|NP_540177.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. 16M] gi|237815141|ref|ZP_04594139.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A] gi|17983245|gb|AAL52441.1| DNA polymerase iii, chi subunit [Brucella melitensis bv. 1 str. 16M] gi|237789978|gb|EEP64188.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A] Length = 165 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 17 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT + N N +T+RFLV+ A + YE++V + + DQ Sbjct: 77 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 131 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 132 QLDIARTQWKAFKAENH 148 >gi|13476528|ref|NP_108098.1| DNA polymerase III subunit chi [Mesorhizobium loti MAFF303099] gi|14027289|dbj|BAB54243.1| mlr7869 [Mesorhizobium loti MAFF303099] Length = 149 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ ++G R VQ G+E RD+L+++LWT++ D FL H Sbjct: 1 MADVLFYHLTESTLEEALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 D + QP+LLT S N N + IRFLVD A D+ YE+ VF+ + D Sbjct: 61 AT---DREAYPDEQPILLTTSDGNPNEAKIRFLVDGA--VPSDLAGYERAVFLFDGHDAA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 +E R HW+++K++G+A Sbjct: 116 QVEAARGHWKTMKDAGHA 133 >gi|188584381|ref|YP_001927826.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001] gi|179347879|gb|ACB83291.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001] Length = 150 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+G + ++Q SE +L++ LWT+ + FLPH Sbjct: 1 MTEILFYHLQRQPLEKVLPNLLEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D ++ QPV+LT+ N N ++IRFLV+ A + D Y+++ + + D Sbjct: 61 GT---DRDTDAASQPVVLTLRETNPNAASIRFLVEGAEL-PEDAGSYQRICILFDGTDTD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR K +G+A Sbjct: 117 ALLHAREQWRGAKAAGHA 134 >gi|170749513|ref|YP_001755773.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans JCM 2831] gi|170656035|gb|ACB25090.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans JCM 2831] Length = 150 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L++ ++G + ++Q SE +L+++LWT+ + FLPH Sbjct: 1 MTEILFYHMQRQPLEKVLPNLVERSLDRGWQAAIQAASEERLQALDDHLWTYSDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D ++ QPV+LT+ +N NT++IRFLV+ A + D YE++ + + DQ Sbjct: 61 GT---DREPDAASQPVVLTLRDVNPNTASIRFLVEGADL-PPDAGQYERICILFDGTDQD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R W+ K++G+A Sbjct: 117 ALLRAREQWKQAKDAGHA 134 >gi|299133715|ref|ZP_07026909.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2] gi|298591551|gb|EFI51752.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2] Length = 155 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G RV VQ GSE D L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQDMKLENVLPPLLEKSLERGWRVVVQVGSEERADMLDSHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ +PV+LT+S N N +++ FLVD A + I D Y++VV I N DD Sbjct: 61 GTWREAD---AASEPVVLTVSDANPNGASVCFLVDGAPVPI-DCSAYQRVVLIFNGDDDE 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L RA W K G+ Sbjct: 117 ALGAARAAWTDCKARGFE 134 >gi|225627187|ref|ZP_03785225.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo] gi|225618022|gb|EEH15066.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo] Length = 165 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+LN LWT+ F+ H Sbjct: 17 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 76 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT + N N +T+RFLV+ A + YE++V + + DQ Sbjct: 77 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 131 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 132 QLDIARTQWKAFKAENH 148 >gi|114766155|ref|ZP_01445159.1| DNA polymerase III subunit chi [Pelagibaca bermudensis HTCC2601] gi|114541615|gb|EAU44657.1| DNA polymerase III subunit chi [Roseovarius sp. HTCC2601] Length = 152 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L +LL+ G RV+V+ D L++ LW +DGFLPH Sbjct: 1 MGAAYFYHLTQRPLEATLPLLLEKSLAAGWRVAVRGTDPGRIDWLDQRLWMGPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + QPVLLT+ N VD A + +V+ E+V + + D Sbjct: 61 G---QAGGKHDALQPVLLTVQEALPNDPACLMAVDGAGVAPEEVNRLERVCILFDGHDGM 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R WR+L +G Sbjct: 118 ALDAARGQWRALTGAGCKAQ 137 >gi|153009926|ref|YP_001371141.1| DNA polymerase III subunit chi [Ochrobactrum anthropi ATCC 49188] gi|151561814|gb|ABS15312.1| DNA polymerase III chi subunit HolC [Ochrobactrum anthropi ATCC 49188] Length = 149 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV++Q SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT S N N +T+RFLV+ A + D YE++V + + DQ Sbjct: 61 GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLEQAD--AYERLVVMFDGHDQD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 116 QLDIARGQWKNFKAGSH 132 >gi|23501577|ref|NP_697704.1| DNA polymerase III subunit chi [Brucella suis 1330] gi|62289652|ref|YP_221445.1| DNA polymerase III subunit chi [Brucella abortus bv. 1 str. 9-941] gi|82699579|ref|YP_414153.1| DNA polymerase III subunit chi [Brucella melitensis biovar Abortus 2308] gi|148559893|ref|YP_001258671.1| DNA polymerase III subunit chi [Brucella ovis ATCC 25840] gi|161618659|ref|YP_001592546.1| DNA polymerase III subunit chi [Brucella canis ATCC 23365] gi|163842960|ref|YP_001627364.1| DNA polymerase III subunit chi [Brucella suis ATCC 23445] gi|189023901|ref|YP_001934669.1| DNA polymerase III subunit chi [Brucella abortus S19] gi|225852210|ref|YP_002732443.1| DNA polymerase III subunit chi [Brucella melitensis ATCC 23457] gi|254688961|ref|ZP_05152215.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870] gi|254693443|ref|ZP_05155271.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya] gi|254697096|ref|ZP_05158924.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str. 86/8/59] gi|254701473|ref|ZP_05163301.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513] gi|254704020|ref|ZP_05165848.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686] gi|254707607|ref|ZP_05169435.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10] gi|254709811|ref|ZP_05171622.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94] gi|254718825|ref|ZP_05180636.1| DNA polymerase III subunit chi [Brucella sp. 83/13] gi|254729991|ref|ZP_05188569.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292] gi|256031302|ref|ZP_05444916.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1] gi|256044382|ref|ZP_05447286.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. Rev.1] gi|256060815|ref|ZP_05450975.1| DNA polymerase III subunit chi [Brucella neotomae 5K33] gi|256113225|ref|ZP_05454093.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str. Ether] gi|256257210|ref|ZP_05462746.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68] gi|256264282|ref|ZP_05466814.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str. 63/9] gi|256369124|ref|YP_003106632.1| DNA polymerase III subunit chi [Brucella microti CCM 4915] gi|260545597|ref|ZP_05821338.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038] gi|260563734|ref|ZP_05834220.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M] gi|260566732|ref|ZP_05837202.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40] gi|260754451|ref|ZP_05866799.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870] gi|260757670|ref|ZP_05870018.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292] gi|260761497|ref|ZP_05873840.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str. 86/8/59] gi|260883480|ref|ZP_05895094.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68] gi|261213697|ref|ZP_05927978.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya] gi|261315096|ref|ZP_05954293.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10] gi|261317349|ref|ZP_05956546.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94] gi|261324807|ref|ZP_05964004.1| DNA polymerase III subunit chi [Brucella neotomae 5K33] gi|261752016|ref|ZP_05995725.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513] gi|261754675|ref|ZP_05998384.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686] gi|265983811|ref|ZP_06096546.1| DNA polymerase III subunit chi [Brucella sp. 83/13] gi|265988387|ref|ZP_06100944.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1] gi|265990801|ref|ZP_06103358.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. Rev.1] gi|265994637|ref|ZP_06107194.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str. Ether] gi|294852052|ref|ZP_06792725.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026] gi|297248059|ref|ZP_06931777.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196] gi|306845290|ref|ZP_07477866.1| DNA polymerase III subunit chi [Brucella sp. BO1] gi|23347490|gb|AAN29619.1| conserved hypothetical protein [Brucella suis 1330] gi|62195784|gb|AAX74084.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82615680|emb|CAJ10667.1| DNA polymerase III chi subunit, HolC [Brucella melitensis biovar Abortus 2308] gi|148371150|gb|ABQ61129.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161335470|gb|ABX61775.1| DNA polymerase III chi subunit HolC [Brucella canis ATCC 23365] gi|163673683|gb|ABY37794.1| DNA polymerase III chi subunit HolC [Brucella suis ATCC 23445] gi|189019473|gb|ACD72195.1| DNA polymerase III chi subunit, HolC [Brucella abortus S19] gi|225640575|gb|ACO00489.1| DNA polymerase III chi subunit HolC [Brucella melitensis ATCC 23457] gi|255999284|gb|ACU47683.1| DNA polymerase III subunit chi [Brucella microti CCM 4915] gi|260097004|gb|EEW80879.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038] gi|260153750|gb|EEW88842.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M] gi|260156250|gb|EEW91330.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40] gi|260667988|gb|EEX54928.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292] gi|260671929|gb|EEX58750.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str. 86/8/59] gi|260674559|gb|EEX61380.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870] gi|260873008|gb|EEX80077.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68] gi|260915304|gb|EEX82165.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya] gi|261296572|gb|EEY00069.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94] gi|261300787|gb|EEY04284.1| DNA polymerase III subunit chi [Brucella neotomae 5K33] gi|261304122|gb|EEY07619.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10] gi|261741769|gb|EEY29695.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513] gi|261744428|gb|EEY32354.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686] gi|262765750|gb|EEZ11539.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str. Ether] gi|263001585|gb|EEZ14160.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. Rev.1] gi|263094542|gb|EEZ18351.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str. 63/9] gi|264660584|gb|EEZ30845.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1] gi|264662403|gb|EEZ32664.1| DNA polymerase III subunit chi [Brucella sp. 83/13] gi|294820641|gb|EFG37640.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026] gi|297175228|gb|EFH34575.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196] gi|306274449|gb|EFM56256.1| DNA polymerase III subunit chi [Brucella sp. BO1] gi|326408709|gb|ADZ65774.1| DNA polymerase III chi subunit, HolC [Brucella melitensis M28] gi|326538433|gb|ADZ86648.1| DNA polymerase III chi subunit HolC [Brucella melitensis M5-90] Length = 149 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT + N N +T+RFLV+ A + YE++V + + DQ Sbjct: 61 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 116 QLDIARTQWKAFKAENH 132 >gi|298291098|ref|YP_003693037.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506] gi|296927609|gb|ADH88418.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506] Length = 148 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY ++ E L LL+ E+G R +VQ S ++L++ LWT+ + FLPH Sbjct: 1 MTEVFFYHLQSRPLEAALPQLLEKCLERGWRCTVQSSSPERIEALDQLLWTYDEASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D + S QP+LLT S N N +T+RF +D AS D+ Y +V+ + + +D Sbjct: 61 GTDRQPD---SGRQPILLTTSESNPNGATVRFFIDSAS--APDLSPYARVIHLFDGNDSD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 +L+ R WR +++G+ Sbjct: 116 ALDHARTAWREARSAGH 132 >gi|256159415|ref|ZP_05457193.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1] gi|256254710|ref|ZP_05460246.1| DNA polymerase III subunit chi [Brucella ceti B1/94] gi|260168441|ref|ZP_05755252.1| DNA polymerase III subunit chi [Brucella sp. F5/99] gi|261221890|ref|ZP_05936171.1| DNA polymerase III subunit chi [Brucella ceti B1/94] gi|261757903|ref|ZP_06001612.1| DNA polymerase III chi subunit [Brucella sp. F5/99] gi|265997853|ref|ZP_06110410.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1] gi|260920474|gb|EEX87127.1| DNA polymerase III subunit chi [Brucella ceti B1/94] gi|261737887|gb|EEY25883.1| DNA polymerase III chi subunit [Brucella sp. F5/99] gi|262552321|gb|EEZ08311.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1] Length = 149 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+LN LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT + N N +T+RFLV+ A + YE++V + + DQ Sbjct: 61 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W++ K + Sbjct: 116 QLDIARTQWKAFKAENH 132 >gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62] gi|254040068|gb|ACT56864.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62] Length = 141 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 141/141 (100%), Positives = 141/141 (100%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG Sbjct: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS Sbjct: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 Query: 121 LEWGRAHWRSLKNSGYAPDVI 141 LEWGRAHWRSLKNSGYAPDVI Sbjct: 121 LEWGRAHWRSLKNSGYAPDVI 141 >gi|86749602|ref|YP_486098.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris HaA2] gi|86572630|gb|ABD07187.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris HaA2] Length = 150 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ GSE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQAGSEERADTLDAHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + + QP++LT N N +T+RFL+D A++ D + YE++V + + DD+ Sbjct: 61 ATWRVAD---AMHQPIVLTAEESNPNAATVRFLLDNAAL-PADAEGYERMVLLFDGDDED 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W+ K+ G+ Sbjct: 117 AVGMARDMWKQSKSRGFE 134 >gi|254477359|ref|ZP_05090745.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11] gi|214031602|gb|EEB72437.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11] Length = 154 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + L VLL+ G R+ V+ + L++ LW +D FLPH Sbjct: 1 MGAVYFYHLTRRPLAETLPVLLEKAMGAGWRIVVRGQDQERITWLDDRLWQGPEDRFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 GV G QPVLLT A + VD A + +V E+V + + DQ Sbjct: 61 GVA---GGPRDHLQPVLLTTQPELAEGTHCLMAVDGADVTPAEVASLERVCILFDGTDQA 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 ++ R W++L ++G A Sbjct: 118 AVARARTQWKTLTDAGCAAQ 137 >gi|83952303|ref|ZP_00961035.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM] gi|83837309|gb|EAP76606.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM] Length = 151 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 5/140 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L +LL G RV V+ D L++ LW + FLPH Sbjct: 1 MGAAYFYHLTRQPLEATLPMLLTKAMGAGWRVVVRGVEPGRMDWLDQKLWQG-GESFLPH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + AN VD A + +V E+V + + +D Sbjct: 60 GLA---GGAHDALQPVLLTTAMEAANDPQCLMAVDGAEVSAEEVQRLERVCVLFDGNDMA 116 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R W++L +G + Sbjct: 117 ALDRARGQWKALTEAGCSAQ 136 >gi|316933710|ref|YP_004108692.1| DNA polymerase III subunit chi HolC [Rhodopseudomonas palustris DX-1] gi|315601424|gb|ADU43959.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris DX-1] Length = 150 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ SE D+L+ +LWT+++D FLPH Sbjct: 1 MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDGHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + ++ QP+LLT N N + +RFLVD A++ D D YE++V + N DD Sbjct: 61 ATWRVAD---AAQQPILLTAGDGNPNGAKVRFLVDNAAL-PEDSDSYERMVLLFNGDDDE 116 Query: 120 SLEWGRAHWRSLKNSGY 136 ++ R W+ K + Sbjct: 117 AVAMARDAWKQCKARAF 133 >gi|154245406|ref|YP_001416364.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus Py2] gi|154159491|gb|ABS66707.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus Py2] Length = 153 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+G R VQCGS RD+L+ +LWT+ + FLPH Sbjct: 1 MTEILFYHLERRPLEQVLPTLLEKSLERGWRCVVQCGSAERRDALDAHLWTYNEASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + QPVLL + N N + +RFLVD ++ + D Y +VV + + D Sbjct: 61 GTEAQ---PVPERQPVLLATTEANPNGAQVRFLVD--AVPLADAAPYVRVVHLFDGRDDE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 + R WR K + A Sbjct: 116 QVAAARERWREAKAAATA 133 >gi|254465585|ref|ZP_05078996.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium Y4I] gi|206686493|gb|EDZ46975.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium Y4I] Length = 152 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL G R++V+ L++ LW ++ F H Sbjct: 1 MGAAYFYHLTRRPLEETLPVLLDKARGAGWRIAVRGRDPERMAWLDDRLWQGPEESFPAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT AN+ VD A++ +V +V + + D Sbjct: 61 GLA---GGPHDALQPVLLTAGPEAANSPDCVMAVDGAAVTAEEVQALSRVCILFDGTDPE 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W+SL ++G + Sbjct: 118 AVQHARTQWKSLTDAGCSAQ 137 >gi|222148156|ref|YP_002549113.1| hypothetical protein Avi_1546 [Agrobacterium vitis S4] gi|221735144|gb|ACM36107.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 149 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ E+G +V V+ D L+++LWT++ D FL H Sbjct: 1 MTEVLFYHLTETRLEDALPALLEKSVERGWKVGVEMRDPERCDRLDQHLWTFRDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ + G+ + QP+LL +SS N N +T+RF +D A + V Y+++VF+ + DQG Sbjct: 61 GISI---GEQAEAQPILLCLSSDNPNGATVRFYIDGAVPDLPLV--YDRIVFVFDGHDQG 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE R W+ LK G+A Sbjct: 116 ELETARGEWKRLKGEGHA 133 >gi|254713815|ref|ZP_05175626.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1] gi|254717127|ref|ZP_05178938.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1] gi|261218942|ref|ZP_05933223.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1] gi|261321559|ref|ZP_05960756.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1] gi|260924031|gb|EEX90599.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1] gi|261294249|gb|EEX97745.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1] Length = 149 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ + L L++ +G RV+VQ SE RD+L+ LWT+ F+ H Sbjct: 1 MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ QPVLLT + N N +T+RFLV+ A + YE++V + + DQ Sbjct: 61 GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L+ R W + K + Sbjct: 116 QLDIARTQWEAFKAENH 132 >gi|75675867|ref|YP_318288.1| DNA polymerase III subunit chi [Nitrobacter winogradskyi Nb-255] gi|74420737|gb|ABA04936.1| DNA polymerase III, chi subunit [Nitrobacter winogradskyi Nb-255] Length = 150 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 5/139 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ +E+G R V SE D+L+ +LW+++ D FLPH Sbjct: 1 MTEVLFYHLQNMSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 ++ + QP++LT+ N N +T+RFL+D A + ++D YE++V I + DD Sbjct: 61 ATWRIED---AGEQPIVLTVDGRNPNRATVRFLIDNAPL-PENLDTYERLVLIFDGDDGA 116 Query: 120 SLEWGRAHWRSLKNSGYAP 138 +L+ RA W K+ G Sbjct: 117 ALDAARAIWTECKSRGCEA 135 >gi|86138695|ref|ZP_01057268.1| DNA polymerase III subunit chi [Roseobacter sp. MED193] gi|85824755|gb|EAQ44957.1| DNA polymerase III subunit chi [Roseobacter sp. MED193] Length = 152 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L VLLQ G R++V+ L+E LW D FL H Sbjct: 1 MGSAYFYHLTQRPLQETLPVLLQKARGAGWRIAVRGQQADRMSWLDEVLWQGSADSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LLT + +AN VD A + +V E+V + + +++ Sbjct: 61 GLA---GGPHDALQPILLTTTQDSANQPECLMTVDGAEVTAAEVQALERVCILFDGNNET 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R+ W+SL +G + Sbjct: 118 ALQQARSQWKSLTGAGCSAQ 137 >gi|85716327|ref|ZP_01047300.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A] gi|85696843|gb|EAQ34728.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A] Length = 150 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 5/139 (3%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ +E+G R V SE D+L+ +LW+++ D FLPH Sbjct: 1 MTEVLFYHLQNTSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 ++ +S QP++LT+ N N +T+RFL+D A + D YE++V I + DD Sbjct: 61 ATWRIED---ASEQPIVLTVDGRNPNGATVRFLIDSAPL-PESPDTYERLVLIFDGDDSV 116 Query: 120 SLEWGRAHWRSLKNSGYAP 138 +L+ RA W K+ G+ Sbjct: 117 ALDAARAVWTECKSRGFEA 135 >gi|27379220|ref|NP_770749.1| DNA polymerase III subunit chi [Bradyrhizobium japonicum USDA 110] gi|27352371|dbj|BAC49374.1| blr4109 [Bradyrhizobium japonicum USDA 110] Length = 150 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ E+G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMTVENVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 ++ ++ QP++L I N N + +RFLVD A++ D YE++V + N DD Sbjct: 61 ATWRVND---AADQPIVLAIEEDNPNGAHVRFLVDNAAL-PQDAQGYERMVLLFNGDDPD 116 Query: 120 SLEWGRAHWRSLKNSGY 136 +L R+ W K G+ Sbjct: 117 ALALARSAWTDCKARGF 133 >gi|90423818|ref|YP_532188.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB18] gi|90105832|gb|ABD87869.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB18] Length = 150 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ ++G RV VQ +E D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMTVEKVLPSLLEKSLQRGWRVVVQATTEERADALDTHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + +S QP++LT N N + +RFL+D A++ DV Y+++V + N DD+ Sbjct: 61 ATWRVAD---ASQQPIVLTADEANPNGAKVRFLIDNAAL-PTDVALYDRLVLVFNGDDED 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 S+ RA W K+ G+A Sbjct: 117 SVVMARAAWTDSKSRGFA 134 >gi|146340306|ref|YP_001205354.1| DNA polymerase III subunit chi [Bradyrhizobium sp. ORS278] gi|146193112|emb|CAL77123.1| putative DNA polymerase III, chi subunit, HolC [Bradyrhizobium sp. ORS278] Length = 150 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQSMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + + QP++L I N N + +RFLVD A + D YE++V + N DD Sbjct: 61 ATWRVAD---VAEQPIVLAIEESNPNRANVRFLVDNAPL-PSDSQSYERMVLVFNGDDPD 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R+ W KN G+ Sbjct: 117 ALAAARSAWTDCKNRGFE 134 >gi|91977432|ref|YP_570091.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB5] gi|91683888|gb|ABE40190.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB5] Length = 150 Score = 184 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ +G RV VQ GSE ++L+ +LWT++ D FLPH Sbjct: 1 MTDVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSGSEERTETLDAHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + ++ QP++LT N N + +RFL+D ++ D + YE++V + + DD Sbjct: 61 ATSRVAD---AAHQPIVLTAEEGNPNAAMVRFLLDNVAL-PADAESYERMVLLFDGDDDD 116 Query: 120 SLEWGRAHWRSLKNSGY 136 ++ R W+ K+ G+ Sbjct: 117 AVAMARVAWKQSKSRGF 133 >gi|126728785|ref|ZP_01744600.1| DNA polymerase III subunit chi [Sagittula stellata E-37] gi|126710715|gb|EBA09766.1| DNA polymerase III subunit chi [Sagittula stellata E-37] Length = 152 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +LL E+G RV+V+ D L+ LW ++GFLPH Sbjct: 1 MGAVFFYHLTRQPVEVTLGMLLTKSLERGWRVAVRGTDPARLDWLDAKLWLEPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G F + QPVLLT + N +D A + + D E+V + + D Sbjct: 61 GLA---GGKFDAEQPVLLTTALEAPNEPACLIALDGAEIRPEETDALERVCILFDGGDGA 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W++L ++G Sbjct: 118 AVQAARGQWKALTSAGCKAQ 137 >gi|115525292|ref|YP_782203.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisA53] gi|115519239|gb|ABJ07223.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisA53] Length = 150 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L LL+ ++G RV VQ SE D+L+ +LWT+++D FLPH Sbjct: 1 MTEVLFYHLQGVTVEKVLPSLLEKSLQRGWRVVVQSTSEERTDALDTHLWTYREDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + ++ QP++L N N +T+RFL+D A++ D+ Y+++V + N DD Sbjct: 61 ATWRVAD---AAQQPIVLVADEGNPNGATVRFLIDNAAL-PADIASYDRMVLVFNGDDDE 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ RA W + K G+ Sbjct: 117 AIALARAAWTASKAKGFE 134 >gi|163759138|ref|ZP_02166224.1| putative DNA polymerase III, chi subunit protein [Hoeflea phototrophica DFL-43] gi|162283542|gb|EDQ33827.1| putative DNA polymerase III, chi subunit protein [Hoeflea phototrophica DFL-43] Length = 149 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ E+G RVSV GSE +L+ +LWT++++ FLPH Sbjct: 1 MAEILFYHLTESRLEDALPPLLEKSLERGWRVSVHLGSEERLAALDAHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G D+ + QPVLLT+S AN +T+RF+ D A + + E++V + + DQ Sbjct: 61 GSDM---AAHADRQPVLLTLSQEAANAATVRFVADGADLPA--LAGVERLVLMFDGHDQD 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 LE RA W+ LK+ G+ Sbjct: 116 QLEAARAQWKRLKSDGHE 133 >gi|209964868|ref|YP_002297783.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum centenum SW] gi|209958334|gb|ACI98970.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum centenum SW] Length = 149 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E +L LL+ E+G R V SE ++L ++LWTWK D FLPH Sbjct: 1 MTDVRFYHLTRKTLEQSLPELLEKTLERGWRAVVLAASEERAEALAQHLWTWKPDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + QPV L+ + N + + FLVD A YE+V + + +D Sbjct: 61 GTA---RDGHPARQPVFLSATDERPNDANVLFLVDGAET--ARAPEYERVCDLFDGNDPD 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L R WR+ K +G+A Sbjct: 116 ALAAARQRWRTAKAAGHA 133 >gi|90419504|ref|ZP_01227414.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas manganoxydans SI85-9A1] gi|90336441|gb|EAS50182.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas manganoxydans SI85-9A1] Length = 150 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 7/139 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LL+ +G RV VQ SE RD+L+ +LW ++ + FLPH Sbjct: 1 MTEVLFYHLTQSRLEEALPDLLEKSLGRGWRVVVQFSSEERRDALDHHLWVYRDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLN-ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G D G + QP+LLT+ + AN +RFLVD A ++ Y + V++ + D Sbjct: 61 GSDSDSSG---ALQPILLTVEAEQKANDPQVRFLVDGA--VPASLEGYVRAVYLFDGHDA 115 Query: 119 GSLEWGRAHWRSLKNSGYA 137 L+ R+ W+ K +G+A Sbjct: 116 EQLDLARSRWKVEKAAGHA 134 >gi|110680304|ref|YP_683311.1| DNA polymerase III subunit chi [Roseobacter denitrificans OCh 114] gi|109456420|gb|ABG32625.1| DNA polymerase III, chi subunit, putative [Roseobacter denitrificans OCh 114] Length = 155 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +FY + E L++LL G RV V+ L+E LW D FLPH Sbjct: 1 MGKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LL+ +S N +T VD A + +V ++V + + +D Sbjct: 61 GLA---GGAHDARQPILLSTTSDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQ 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R W +LK +G A + Sbjct: 118 ALDVARGQWSALKKAGAAAE 137 >gi|83312772|ref|YP_423036.1| DNA polymerase III subunit chi [Magnetospirillum magneticum AMB-1] gi|82947613|dbj|BAE52477.1| DNA polymerase III, chi subunit [Magnetospirillum magneticum AMB-1] Length = 151 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL G R V GS ++LN+ LWT++ + +LPH Sbjct: 1 MTQIGFYHLMRLPLEQALPKLLDKALAAGFRAVVLAGSPERVEALNDRLWTYEPESWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G E QP+ LT S N N +TI + D AS V Y++ + + + +D Sbjct: 61 GSARDGE---PEMQPIWLTHSDENPNGATILVMCDGASS--EKVGAYQRGLDLFDGNDPD 115 Query: 120 SLEWGRAHWRSLKNSGY 136 ++E R W+ K+ G+ Sbjct: 116 AVEKARERWKRWKSEGH 132 >gi|16125938|ref|NP_420502.1| DNA polymerase III subunit chi [Caulobacter crescentus CB15] gi|221234701|ref|YP_002517137.1| DNA polymerase III subunit chi [Caulobacter crescentus NA1000] gi|13423106|gb|AAK23670.1| DNA polymerase III, chi subunit, putative [Caulobacter crescentus CB15] gi|220963873|gb|ACL95229.1| DNA polymerase III, chi subunit [Caulobacter crescentus NA1000] Length = 153 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY ++ E L LL+ +G + V+ G R ++L+++LWTW++D FLPHG+ Sbjct: 7 EVWFYHLERSPLEAVLPELLEKTLGRGWKALVRGGDPRRIEALDQHLWTWREDSFLPHGL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + QPVLLT + N N+ FL+D A GD+ + + + + D +L Sbjct: 67 A---SEPMAERQPVLLTAAEGNPNSGDALFLIDGAE--PGDLSGVSRCILLFDGRDDQAL 121 Query: 122 EWGRAHWRSLKNSGYA 137 R W + K +G+ Sbjct: 122 AQARGRWSTFKKAGHP 137 >gi|197105166|ref|YP_002130543.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1] gi|196478586|gb|ACG78114.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1] Length = 148 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L LL+ ++G + V+ + L+ +LW+++ D FLPH Sbjct: 1 MTEVWFYHLERTGLDQALPELLEKTLQRGWKAIVRTPVPERVEHLDGWLWSYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 ++ QP+LLT+ N N + FLVD A GD+ Y++ V + + D Sbjct: 61 A---PAGEPGAARQPILLTMDFENPNGADALFLVDGAE--PGDLAGYQRCVVLFDGADPA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L R+ W +K G++ Sbjct: 116 QLSLARSQWSQVKAKGFS 133 >gi|167646494|ref|YP_001684157.1| DNA polymerase III subunit chi [Caulobacter sp. K31] gi|167348924|gb|ABZ71659.1| DNA polymerase III chi subunit HolC [Caulobacter sp. K31] Length = 153 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 3 TLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY + E L LL+ +G R V+ G +L+ +LWTW+ D FLPHG+ Sbjct: 7 DIWFYHLERSALEQVLPELLEKTLGRGWRALVRGGDPARLRALDAHLWTWRDDSFLPHGL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 D+ + QPVLLT N N FL+D A GD+ +E+ + + + D+ +L Sbjct: 67 ---DDEPMADRQPVLLTDKLDNPNGGQALFLLDGAE--PGDLSGFERCILLFDGRDEEAL 121 Query: 122 EWGRAHWRSLKNSGYA 137 R W++ K +G+ Sbjct: 122 RLARGRWKAFKGAGHP 137 >gi|118590097|ref|ZP_01547500.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata IAM 12614] gi|118437069|gb|EAV43707.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata IAM 12614] Length = 150 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 ++FY E L LLQ E+ +V VQ G+E +L+ +LWT+ DGFLPHG Sbjct: 4 EVVFYHLLHKPLEMALPQLLQKCLERDWKVVVQTGTEERCSALDAHLWTFTDDGFLPHGT 63 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 +S QP+ LT N N + +RFLVD A + Y++ +++ + +D ++ Sbjct: 64 KA---DGYSEHQPIYLTADQDNPNDADVRFLVDRA--TPPPLTAYKRAIYMFDGNDTDAV 118 Query: 122 EWGRAHWRSLKNSGYA 137 + R W+ K G+ Sbjct: 119 QEARNRWKEAKAEGFE 134 >gi|84500992|ref|ZP_00999227.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597] gi|84391059|gb|EAQ03477.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597] Length = 154 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L LL G R++V+ S D L++ LW D FLPH Sbjct: 1 MGDAYFYHLTHSPVERTLPSLLGKALGAGWRIAVRGRSRDRLDWLDQKLWLGPDDDFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 GV+ G + QP+LLT + AN +D A + DV ++V + + +D Sbjct: 61 GVE---GGAHDALQPILLTTGTA-ANDPACLMAIDGAEVAASDVSGMQRVCILFDGNDTE 116 Query: 120 SLEWGRAHWRSLKNSG 135 +LE RA WR++ +G Sbjct: 117 ALEMARAQWRTITAAG 132 >gi|126725338|ref|ZP_01741180.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150] gi|126704542|gb|EBA03633.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150] Length = 156 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L ++ G RV V+ S+ D L++ LWT DGFLPH Sbjct: 1 MSATYFYHLTHEPLESALPKIIVKARAAGWRVVVRGTSDERLDWLDKQLWTQTADGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G F + QPVLLT SS N + +D A++ DV +E++ + N ++ Sbjct: 61 GRS---GGKFDADQPVLLTNSSETPNDAACLIAIDRAAISADDVAKFERICLMFNGNNGD 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R W++L + G+ Sbjct: 118 ALDDARTQWKTLSDQGFEAQ 137 >gi|218659074|ref|ZP_03515004.1| DNA polymerase III subunit chi [Rhizobium etli IE4771] Length = 121 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 6/126 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDVHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G DE DF+ QPVLLT++ N N +T+RF+VD A YE++VF+ + DQ Sbjct: 61 GT---DEADFAESQPVLLTVTPDNPNAATVRFIVDGAEPPPA--ASYERIVFMFDGHDQE 115 Query: 120 SLEWGR 125 LE R Sbjct: 116 QLEAAR 121 >gi|163735793|ref|ZP_02143222.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149] gi|161390879|gb|EDQ15219.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149] Length = 151 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 5 LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 +FY + E L++LL G RV V+ L+E LW D FLPHG+ Sbjct: 1 MFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPHGLA- 59 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 G + QP+LL+ + N +T VD A + +V ++V + + +D +L+ Sbjct: 60 --GGAHDARQPILLSTTPDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDPQALDI 117 Query: 124 GRAHWRSLKNSGYAPD 139 R W +LK +G A + Sbjct: 118 ARGQWSTLKKAGAAAE 133 >gi|217978369|ref|YP_002362516.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2] gi|217503745|gb|ACK51154.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2] Length = 151 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY + + L L++ EKG RV VQ SE +L+++LWT++ D FL HG Sbjct: 2 EIWFYHLQRQSLDQALPALIEKSLEKGWRVVVQATSEERLAALDQHLWTYRDDSFLAHGR 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQGS 120 V +GD QPV L+ + N N + +R ++ A + D YE+ + N +D Sbjct: 62 SVDGDGD---LQPVYLSTGAENPNGARLRIFIEGAPIAASLDAGPYERALSAFNGNDADE 118 Query: 121 LEWGRAHWRSLKNSGYA 137 L R W+ LK+ G+A Sbjct: 119 LAAARTQWKELKDRGFA 135 >gi|254473341|ref|ZP_05086738.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062] gi|211957457|gb|EEA92660.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062] Length = 149 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY+ E L LL+ E+ V+VQ G+E D+++ YLWT+ DGFLPH Sbjct: 1 MSEVLFYQLSKFPLERALPTLLEKCLERDWVVTVQFGTEERCDAIDSYLWTYSDDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + FQP+ LT S N N + +RFLVD A + D Y++VV++ + +DQ Sbjct: 61 GTK---KEGHPEFQPIYLTTESDNPNEAIVRFLVDRAPL--PDPAQYQRVVYMFDGNDQE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L+ R W +KNS + Sbjct: 116 ALQEARQRWLEVKNSDHE 133 >gi|288958789|ref|YP_003449130.1| DNA polymerase III subunit chi [Azospirillum sp. B510] gi|288911097|dbj|BAI72586.1| DNA polymerase III subunit chi [Azospirillum sp. B510] Length = 149 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +L+ E+ R V GS D LN++LWT+ FLPH Sbjct: 1 MTEVRFYHLQRRTMEQALPKILEKVLERNWRAVVLAGSPERVDMLNQHLWTYDPGSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G F+ QPV LT + N N +T+ VD +D Y V + + +D Sbjct: 61 G---AARDGFAERQPVWLTDADENPNGATVLVTVDG--CVSDRMDGYALVCDLFDGNDDE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W++ K +G++ Sbjct: 116 AVLAARQRWKACKAAGHS 133 >gi|121602532|ref|YP_988824.1| DNA polymerase III subunit chi [Bartonella bacilliformis KC583] gi|120614709|gb|ABM45310.1| DNA polymerase III, chi subunit [Bartonella bacilliformis KC583] Length = 149 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L VL++ RV++QC +E RD+++++LW + F+ H Sbjct: 1 MVDILFYHLTQSTPENVLPVLVERALNNFDRVTIQCINEERRDAMDKHLWVYADGAFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ QPV LT + N N STIRFL++ A D+ Y+++V + ++ D+ Sbjct: 61 GTEC---DEYPDLQPVFLTTGNENPNNSTIRFLIEGA--VCSDIHSYQRLVVMFDSRDET 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L RA W++ K + Sbjct: 116 QLNTARAQWKNYKAQNHN 133 >gi|92117861|ref|YP_577590.1| DNA polymerase III subunit chi [Nitrobacter hamburgensis X14] gi|91800755|gb|ABE63130.1| DNA polymerase III, chi subunit [Nitrobacter hamburgensis X14] Length = 151 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ E+G R V SE D+L+ YLWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMALESVLPPLLEKTIERGWRAVVHTTSEERADALDAYLWTYRDDAFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 ++ +S QP+LLTI N N +T+RFL+D A + + + YE++V + + DD Sbjct: 61 ATWRIED---ASEQPILLTIDGHNPNRATVRFLIDSAPL-PENPEAYERLVLVFDGDDGI 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L+ R+ W K G+ Sbjct: 117 ALDAARSVWTECKARGFE 134 >gi|307946746|ref|ZP_07662081.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4] gi|307770410|gb|EFO29636.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4] Length = 150 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 ++FY E L LL ++ +V VQ GS+ D+L+ +LWT+ D FLPHG Sbjct: 4 DVVFYHLLHKPLEAALPQLLLKCLDRDCKVVVQTGSQERCDALDAHLWTFSDDSFLPHGT 63 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + FQP+ LT N N + +RFLVD A + Y++ +++ + D+ ++ Sbjct: 64 KA---DGHAEFQPIYLTCEDDNPNQADVRFLVDRAVRPP--LHGYQRAIYMFDGRDEEAV 118 Query: 122 EWGRAHWRSLKNSGYA 137 R +W+S K+ G+ Sbjct: 119 AEARQNWKSAKSEGFN 134 >gi|328544009|ref|YP_004304118.1| DNA polymerase III, chi subunit protein [polymorphum gilvum SL003B-26A1] gi|326413753|gb|ADZ70816.1| Putative DNA polymerase III, chi subunit protein [Polymorphum gilvum SL003B-26A1] Length = 150 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 2 RTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 LFY ++ E L LL ++ RV VQ GS +L+ +LWT+ D FLPHG Sbjct: 3 AEALFYHLQHQPLEAMLPGLLMKCLDRDWRVVVQTGSPERCAALDAHLWTFADDAFLPHG 62 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + QP+ LT + N N +T+RFLVD A + YE+VV++ + D + Sbjct: 63 TAA---DGHAEDQPIFLTAAGDNPNRATVRFLVDRA--QPPPLAGYERVVYVFDGRDPEA 117 Query: 121 LEWGRAHWRSLKNSGYA 137 + R W+ K G+ Sbjct: 118 VAEARLRWKEAKEQGFT 134 >gi|126739397|ref|ZP_01755090.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6] gi|126719497|gb|EBA16206.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6] Length = 152 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + L+VLL+ G ++V+ L++ LW D FL H Sbjct: 1 MGAAYFYHLTRKPMPETLMVLLEKARGAGWAIAVRGQDPDRMTWLDDALWLGSDDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LLT ++ AN VD A + +V E+V + + +D Sbjct: 61 GLA---GGPHDALQPILLTATAQAANDPKCLMSVDGAGVEAEEVQALERVCILFDGNDMQ 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W++L +G Sbjct: 118 AVQRAREQWKALTGAGCKAQ 137 >gi|23016368|ref|ZP_00056125.1| COG2927: DNA polymerase III, chi subunit [Magnetospirillum magnetotacticum MS-1] Length = 151 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL G R V GS+ + LN LWT++ D +LPH Sbjct: 1 MTQIGFYHLMRLPLEQALPKLLDKALAAGFRAVVLAGSQERVEDLNGRLWTYEPDSWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G E + QP+ LT + N N +TI + D ++ V +++ + + + +D Sbjct: 61 GSARDGE---AEMQPIWLTHTDENPNGATILVMCDGSAS--ERVGAFQRCLDLFDGNDAE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++E R W+ K G+ Sbjct: 116 AVEKARERWKRWKAEGHE 133 >gi|323137701|ref|ZP_08072777.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242] gi|322396998|gb|EFX99523.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242] Length = 159 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 7/141 (4%) Query: 1 MRTLLFYR-FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L VLL+ +G RV +Q SE L++YLW+++ + FLPH Sbjct: 1 MPEIAFYHHTNSTLEQTLPVLLEKSLARGWRVVIQAASEARLRRLDQYLWSYRPESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI---GDVDYYEKVVFIINTD 116 G QP+ LT ++ N N + +RF V+ A + D E+ V + + + Sbjct: 61 GTKADAS---PQTQPIYLTCAADNPNGADVRFFVEGAHIAPVLQSDAAPRERAVLLFSGE 117 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D+ L RA W+ L+++G+ Sbjct: 118 DEAELAGARAQWKELRDAGHT 138 >gi|319405496|emb|CBI79115.1| putative DNA polymerase III chi subunit [Bartonella sp. AR 15-3] Length = 149 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY K+ + L VL++ ++ R+++QC S+ + ++ LW + + F+ H Sbjct: 1 MVDILFYHLTKSTLKDTLPVLVERALKRFGRITIQCMSKEQCNFIDTCLWVYSDESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ QPV LT N N S +RFL++ A D+D Y+++V + + + Sbjct: 61 GTEY---DNYPDLQPVFLTTGQENPNDSQVRFLIEGA--VCSDIDIYQRIVIMFDGHNDA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L R W+ K Y Sbjct: 116 QLNLIREQWKDYKTKNYN 133 >gi|163739702|ref|ZP_02147110.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107] gi|161386932|gb|EDQ11293.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107] Length = 154 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL G R+ V+ L+E LW +D FLPH Sbjct: 1 MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVRGVDLPRITRLDERLWLGAEDQFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLL+ + ++ VD A + +V E+V + + + Sbjct: 61 GL---VGGPHDALQPVLLSHETTPVPGTSCLMAVDGAEVTAEEVTALERVCILFDGTNPD 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 ++ R W+SL ++G + Sbjct: 118 AVARARVQWKSLTDAGCSAQ 137 >gi|163743165|ref|ZP_02150547.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10] gi|161383582|gb|EDQ07969.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10] Length = 154 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL G R+ V+ L+E LW +D FLPH Sbjct: 1 MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVRGVDLPRITRLDERLWLGAEDQFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLL+ + ++ VD A + +V E+V + + + Sbjct: 61 GL---VGGPHDALQPVLLSHETTPVPGTSCLMTVDGAEVTAEEVTALERVCILFDGTNPD 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 ++ R W+SL ++G + Sbjct: 118 AVARARVQWKSLTDAGCSAQ 137 >gi|319404057|emb|CBI77645.1| putative DNA polymerase III chi subunit [Bartonella rochalimae ATCC BAA-1498] Length = 149 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY K+ + L VL++ ++ R+++QC ++ + ++ LW + + F+ H Sbjct: 1 MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + QPV LT N N S +RFL+D A DVD Y+++V + + + Sbjct: 61 GTEY---DKYPDLQPVFLTTGQENPNDSKVRFLIDGA--VCSDVDIYQRLVIMFDGHNDT 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L R W+ K Y Sbjct: 116 QLNLIREQWKDYKTKNYN 133 >gi|163746446|ref|ZP_02153804.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45] gi|161380331|gb|EDQ04742.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45] Length = 152 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + L +LL+ G RV+++ +L+ LWT+ +D FLPH Sbjct: 1 MGAAYFYHLTQRPLVETLTMLLEKSLANGWRVALRGTDPEGLQALDRALWTFSEDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + GD + QPVLLT+ N + V A + ++ ++V + + D Sbjct: 61 AIAGGDR---DADQPVLLTLEDGAPNRADCLMAVHGAHVTAQEIAALQRVCVLFDGHDPM 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L+ R W+ LK+ G + Sbjct: 118 ALDQARGLWKRLKSEGASAQ 137 >gi|144900065|emb|CAM76929.1| DNA polymerase III chi subunit, HolC [Magnetospirillum gryphiswaldense MSR-1] Length = 151 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L LL+ + G RV V GS + LN LWT+ ++ +LPH Sbjct: 1 MTQIGFYHLMRLPLDQALPKLLEKAVQAGLRVVVMAGSSERVEHLNAILWTFSEESWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G E ++ QP+ LT N NT+T+ L D A +D +++ + + + +D+ Sbjct: 61 GSASDGE---AALQPIWLTEREENPNTATVLVLCDGA--RPTSLDGWDRCLDLFDGNDEN 115 Query: 120 SLEWGRAHWRSLKNSGY 136 ++ R W++ K G+ Sbjct: 116 AVLAARERWKTWKAEGH 132 >gi|114704777|ref|ZP_01437685.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506] gi|114539562|gb|EAU42682.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506] Length = 150 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E L LLQ +G RV VQC SE RDSL+ LWT+ ++ FLPH Sbjct: 1 MAEVLFYHLTESRLEDALPELLQRSLARGWRVVVQCTSEERRDSLDNVLWTFSEESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLN-ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G D QP+LLT + AN +RF+VD A GD+ Y + V++ + D Sbjct: 61 GTDAEA---HPESQPILLTTRADQFANKPDVRFMVDGA--TPGDLTGYIRGVYMFDAFDT 115 Query: 119 GSLEWGRAHWRSLKNSGYA 137 + R W+ K++G+ Sbjct: 116 DQMAHAREQWQVEKSAGHE 134 >gi|163868029|ref|YP_001609233.1| DNA polymerase III subunit chi [Bartonella tribocorum CIP 105476] gi|161017680|emb|CAK01238.1| putative DNA polymerase III chi subunit [Bartonella tribocorum CIP 105476] Length = 148 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 +LFY ++ + L L++ + +V++QC S+ RDS++ +LW + + F+ HG Sbjct: 2 DILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSKEQRDSIDMHLWVYADESFIGHGT 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + +++ QPV LTI N N S IRFL++ A D++ Y+++V + + + L Sbjct: 62 EC---DQYANLQPVFLTIGQENPNDSKIRFLIEGA--VCSDINVYQRLVVLFDGRNDEQL 116 Query: 122 EWGRAHWRSLKNSGYA 137 + RA W+ K + Sbjct: 117 NFARAQWKKYKMENHN 132 >gi|319407070|emb|CBI80707.1| putative DNA polymerase III chi subunit [Bartonella sp. 1-1C] Length = 149 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY K+ + L VL++ ++ R+++QC ++ + ++ LW + + F+ H Sbjct: 1 MVDIFFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + QPV LT N N S +RFL+D A D++ Y++VV + + + Sbjct: 61 GTEYDR---YPELQPVFLTTGQENPNDSKVRFLIDGA--VCSDINIYQRVVIMFDGHNDM 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 L R W+ K Y Sbjct: 116 QLNLIREQWKDYKTKNYN 133 >gi|295689674|ref|YP_003593367.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756] gi|295431577|gb|ADG10749.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756] Length = 154 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY ++ E L LL+ +G + V+ G + ++L++ LWT+++D FLPHG+ Sbjct: 8 EVWFYHLERSPLEAVLPELLEKTLGRGWKALVRGGDLKRIEALDQQLWTYREDSFLPHGL 67 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + QPVLLT N N FL+D A GD+ + + + + D +L Sbjct: 68 A---SEPMAERQPVLLTAEEGNPNHGDAIFLIDGAD--PGDLSGVSRCILLFDGRDDQAL 122 Query: 122 EWGRAHWRSLKNSGYA 137 R W K +G+ Sbjct: 123 AEARGRWSVFKKAGHP 138 >gi|319898732|ref|YP_004158825.1| DNA polymerase III chi subunit [Bartonella clarridgeiae 73] gi|319402696|emb|CBI76242.1| putative DNA polymerase III chi subunit [Bartonella clarridgeiae 73] Length = 149 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY K+ + L VL++ ++ R+++QC S+ + ++ LW + + F+ H Sbjct: 1 MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCVSKEQCNFIDTCLWVYADESFIGH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + QPV LTI N N S +RFL++ A D+D Y+++V + + + Sbjct: 61 GTEY---DKYPDLQPVFLTIGQENPNGSKVRFLIEGA--ICSDIDIYQRLVIMFDGHNDE 115 Query: 120 SLEWGRAHWRSLKNSGY 136 L R W+ K Y Sbjct: 116 QLNLIRKQWKEYKTKNY 132 >gi|49475340|ref|YP_033381.1| DNA polymerase III subunit chi [Bartonella henselae str. Houston-1] gi|49238146|emb|CAF27354.1| hypothetical protein BH05460 [Bartonella henselae str. Houston-1] Length = 154 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 +LFY ++ E L L++ + RV++QC S+ RD+++ LW + + F+ HG Sbjct: 8 DILFYHLTQSTLEDILPTLVERALGRFSRVTIQCVSKERRDAIDTRLWVYADEAFIGHGT 67 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + + +FQPV LT N N S IRFL++ A D++ Y+++V + + L Sbjct: 68 EC---DQYPNFQPVFLTTGQENPNDSKIRFLIEGA--ICSDINAYQRLVVLFDGQSDEQL 122 Query: 122 EWGRAHWRSLKNSGYA 137 RA W+ K + Sbjct: 123 HIVRAQWKKYKMENHN 138 >gi|296446339|ref|ZP_06888284.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium OB3b] gi|296256112|gb|EFH03194.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium OB3b] Length = 155 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 8/141 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL+ +G R VQ S R +++E LW++ + FLPH Sbjct: 1 MTEVWFYHLQRRPLESALPKLLELSLARGWRAVVQAASPRRLATIDELLWSYDPESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI----GDVDYYEKVVFIINT 115 G + QPV LT+ N N + +R ++ A ++ + + + Sbjct: 61 GTQRDGD---PQSQPVFLTLLPDNPNRADVRVFIESAEAAPVLADPAAAPTQRAMVMFDG 117 Query: 116 DDQGSLEWGRAHWRSLKNSGY 136 +D+ +L+ RA WR+LK +G+ Sbjct: 118 NDETALQNARAQWRTLKEAGH 138 >gi|240850233|ref|YP_002971626.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup] gi|240267356|gb|ACS50944.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup] Length = 148 Score = 174 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 +LFY ++ + L L++ + +V++QC SE RDS++ +LW + + F+ HG Sbjct: 2 DILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSEEQRDSMDMHLWVYADESFIGHGT 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + +S+FQPV LT N N S IRFL++ A ++D Y+++V I + D L Sbjct: 62 EC---DQYSNFQPVFLTTGQENPNDSKIRFLIEGA--VCSNIDTYQRLVVIFDGRDDEQL 116 Query: 122 EWGRAHWRSLKNSGYA 137 RA W+ K + Sbjct: 117 SLVRAQWKKYKMENHN 132 >gi|83953616|ref|ZP_00962337.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1] gi|83841561|gb|EAP80730.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1] Length = 152 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + L +LL G RV+V+ + + + L+ LW +DGFLPH Sbjct: 1 MGAAYFYHLTQRPLVETLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + N ++ F + A++ +V ++V + + D Sbjct: 61 GLA---GGPHDAEQPVLLTTDTHAPNNASCVFSIHGAAVSAQEVAALDRVCILFDGLDDH 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L R W+SLK +G + Sbjct: 118 ALNVARDQWKSLKAAGASAQ 137 >gi|319408321|emb|CBI81974.1| putative DNA polymerase III chi subunit [Bartonella schoenbuchensis R1] Length = 148 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 +LFY ++ E L VL++ + +RV++QC SE RD+++ LW + + F+ HG Sbjct: 2 DILFYHLTQSTLEDILPVLVERAVARFERVTIQCISEEQRDAIDTRLWVYAEGSFIGHGT 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + + +FQPV LT N N S IRFL++ A D++ Y+++V I + + L Sbjct: 62 EC---DKYPNFQPVFLTTGHENPNDSKIRFLIEGA--VCPDINIYQRLVVIFDGRNNEQL 116 Query: 122 EWGRAHWRSLKNSGYA 137 RA W+ + Sbjct: 117 NLARAQWKEYGTENHN 132 >gi|254460669|ref|ZP_05074085.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium HTCC2083] gi|206677258|gb|EDZ41745.1| DNA polymerase III chi subunit, HolC [Rhodobacteraceae bacterium HTCC2083] Length = 153 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +LL G R V + + D+L+ LW FL H Sbjct: 1 MGAVYFYHLTRKPLEATLPLLLSKARSAGWRCLVVGRNPQRLDALDTQLWQGAGTDFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + + QP+LL + + N + +D A + V Y + + + +++ Sbjct: 61 GRAGGVQ---DAAQPILLADTQTDINDAECAMCIDGADVTPDQVKTYARTCILFDGNNEQ 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 ++ R W++L ++G A Sbjct: 118 EVQTARIQWKTLTDAGCAAQ 137 >gi|83942396|ref|ZP_00954857.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36] gi|83846489|gb|EAP84365.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36] Length = 152 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 4/140 (2%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + L +LL G RV+V+ + + + L+ LW +D FLPH Sbjct: 1 MGAAYFYHLTQRPLVETLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + N + F + A++ +V ++V + + D Sbjct: 61 GLA---GGPHDAEQPVLLTTDTHAPNNVSCVFSIHGAAVSAQEVAALDRVCILFDGLDDH 117 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +L R W+SLK +G + Sbjct: 118 ALNVARDQWKSLKAAGASAQ 137 >gi|89054307|ref|YP_509758.1| DNA polymerase III subunit chi [Jannaschia sp. CCS1] gi|88863856|gb|ABD54733.1| DNA polymerase III chi subunit HolC [Jannaschia sp. CCS1] Length = 154 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 5/139 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL + G RV+V+ ++ V D L+E LW +DGFLPH Sbjct: 1 MGEAYFYHLTQAPLEVTLRVLLGKSLQAGWRVAVRGRTDAVLDRLDEQLWLVPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G GD + QPVLLT N T V+ AS+ +VD ++V+ + + D Sbjct: 61 GRA---GGDHDAAQPVLLTTGPAG-NDPTCLVSVEGASIDAAEVDAMDRVMVLFDGHDDA 116 Query: 120 SLEWGRAHWRSLKNSGYAP 138 +L+ R W++L +G A Sbjct: 117 ALQTAREQWKTLTAAGVAA 135 >gi|304392002|ref|ZP_07373944.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130] gi|303296231|gb|EFL90589.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130] Length = 151 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY E L L++ + V +Q G E RD L+E LWT+ + FLPH Sbjct: 1 MTDIHFYHLTTGKLEAALPQLVERCRGREWNVVIQAGQEAARDELDELLWTYNDESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + G+ P+ LT N + +RF+V A++ + YE+V+ + + D Sbjct: 61 WREGNGPGEG-GDNPIWLTTGDERPNNAAVRFVVAGATVSKPE--DYERVITMFDGYDDN 117 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R+ W+ LK +G+ Sbjct: 118 AVAQARSQWKELKAAGHT 135 >gi|49474102|ref|YP_032144.1| DNA polymerase III subunit chi [Bartonella quintana str. Toulouse] gi|49239606|emb|CAF25963.1| hypothetical protein BQ04640 [Bartonella quintana str. Toulouse] Length = 153 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY ++ E L L++ RV++QC ++ RD+++ +LW + + F+ HG Sbjct: 7 DIFFYHLMQSTLEDILPTLVERALAAFGRVTIQCVNKERRDAIDMHLWVYADEAFIGHGT 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + + +FQPV LT N N S IRFL++ A D+D Y+++V I + L Sbjct: 67 EC---DQYPNFQPVFLTTGQENPNDSKIRFLIEGA--ICSDIDAYQRLVVIFDDHSDEQL 121 Query: 122 EWGRAHWRSLKNSGYA 137 RA W+ K + Sbjct: 122 NLVRAQWKKYKMENHN 137 >gi|148255230|ref|YP_001239815.1| DNA polymerase III subunit chi [Bradyrhizobium sp. BTAi1] gi|146407403|gb|ABQ35909.1| DNA polymerase III, chi subunit [Bradyrhizobium sp. BTAi1] Length = 150 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY +N E L LL+ E+G RV VQ SE D+L+ +LWT++ D FLPH Sbjct: 1 MTEVLFYHLQNMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + + QP++L + N N + +RFLVD A + D YE++V + N DD Sbjct: 61 ATWRVAD---VADQPIVLAVEESNPNQANVRFLVDNAPL-PSDAHTYERMVLVFNGDDDE 116 Query: 120 SLEWGRAHWRSLKNSGYA 137 +L RA W K G+ Sbjct: 117 ALAAARAAWTDCKTRGFE 134 >gi|300022387|ref|YP_003754998.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans ATCC 51888] gi|299524208|gb|ADJ22677.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans ATCC 51888] Length = 148 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 3 TLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY ++ E L LL+ +G R VQ GSE D+L+ LWT+ + FL HG Sbjct: 2 DVYFYHLEHQTLERVLPSLLEKTLARGWRAVVQAGSEERLDALDLALWTYDDESFLAHGT 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 ++ QPV LT+ N N + +RF VD A + E+ V++ + D +L Sbjct: 62 ARIG---HANLQPVYLTLGHENPNGAGVRFFVDGAE--ADKFEGAERFVYVFDGHDPEAL 116 Query: 122 EWGRAHW 128 R W Sbjct: 117 TSARGQW 123 >gi|315122197|ref|YP_004062686.1| DNA polymerase III subunit chi [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495599|gb|ADR52198.1| DNA polymerase III subunit chi [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 141 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 86/136 (63%), Positives = 117/136 (86%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M LF RFK++W+ + L+LL+ EY+ G R+S+QCGSER+RD+LNE LWTWKKD F+PHG Sbjct: 1 MTDFLFCRFKHNWQNDFLILLESEYQNGLRISIQCGSERIRDALNERLWTWKKDSFMPHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 +DVG+E +SFQP+LLT+SS NAN S +RF VD+ASMHIGD+D+Y+K++FII+TDDQ S Sbjct: 61 IDVGEEEALASFQPILLTVSSNNANASMVRFFVDQASMHIGDMDHYKKIIFIIDTDDQAS 120 Query: 121 LEWGRAHWRSLKNSGY 136 L+WGRA+W++LK++GY Sbjct: 121 LKWGRANWKNLKSNGY 136 >gi|114569779|ref|YP_756459.1| DNA polymerase III subunit chi [Maricaulis maris MCS10] gi|114340241|gb|ABI65521.1| DNA polymerase III, chi subunit [Maricaulis maris MCS10] Length = 150 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 6/137 (4%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 L FY ++ + L LL+ +G R V+ + R+++++ LWTW++D FLPHG Sbjct: 3 GDLWFYHLERSSLDEVLPELLEKTLARGWRALVRSPDAKRREAIDQLLWTWREDSFLPHG 62 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 E QPVL+ N N + FL+D A +++++ + + D+ + Sbjct: 63 ---QVEAGSPERQPVLIAEDEANPNGAHCLFLLDGAE--PEKPSSFDRMIVMFDGQDEMA 117 Query: 121 LEWGRAHWRSLKNSGYA 137 + RA W+ G Sbjct: 118 VTDARALWKKASAEGCT 134 >gi|302383685|ref|YP_003819508.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides ATCC 15264] gi|302194313|gb|ADL01885.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides ATCC 15264] Length = 153 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 + FY ++ + L LL ++G R ++ R +++ LW+W+ D FL HG Sbjct: 6 GEIWFYHLERSTLDQVLPELLDKTLQRGWRARIRVADPDRRAEIDDTLWSWRADSFLAHG 65 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ QP+LLT + N N S F+VD + M + + +E+ I + D+ + Sbjct: 66 ---QADQPHAARQPILLTAGTENPNASQALFIVDGSDMTVTE--EFERCFIIFDGRDEAA 120 Query: 121 LEWGRAHWRSLKNSG 135 L+ R W++LK G Sbjct: 121 LQTARDRWKALKGQG 135 >gi|329890118|ref|ZP_08268461.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas diminuta ATCC 11568] gi|90403466|dbj|BAE91932.1| DNA polymerase III chi subunit [Brevundimonas diminuta] gi|328845419|gb|EGF94983.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas diminuta ATCC 11568] Length = 153 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 6/135 (4%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 + FY ++ + L LL+ ++G R ++ + D ++E LWT++ D FLPHG Sbjct: 6 PEIWFYHLERSTLDQVLPTLLERTLQRGWRALIRGATSHRLDDIDELLWTYRDDSFLPHG 65 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 +G ++ QPVLL+ S N N + F+VD++ + G + + I + D+ + Sbjct: 66 RA---DGGHAARQPVLLSESGENLNGAQALFIVDDSEL--GATQEFARCFIIFDGRDEQA 120 Query: 121 LEWGRAHWRSLKNSG 135 L R WR+LK G Sbjct: 121 LNHARGRWRTLKADG 135 >gi|126736389|ref|ZP_01752131.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2] gi|126714210|gb|EBA11079.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2] Length = 164 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +L+ G RV V+ E + L++ LW +DGF PH Sbjct: 13 MGAVFFYHLTDSPLEATLPMLIGKARGAGWRVLVRGRDEALLRLLDDVLWQGPEDGFQPH 72 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LL + ++ V A + +V+ E+ + D Sbjct: 73 GMA---GGPHDADQPILL--GDVPSDGFGCVMSVAGADVTADEVNALERACILFAGHDDA 127 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +LE R W++L ++G A Sbjct: 128 ALEHARGQWKTLTDAGCAAQ 147 >gi|84684879|ref|ZP_01012779.1| DNA polymerase III subunit chi [Maritimibacter alkaliphilus HTCC2654] gi|84667214|gb|EAQ13684.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2654] Length = 149 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY + E L VLL E+G RV V+ SE L+E LW DGFLPH Sbjct: 1 MGEAYFYHMTRTPLEDTLPVLLGRAREQGWRVVVRGRSEARLRWLDEKLWMG--DGFLPH 58 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G QP+LLT + + +D A + +V +V+ + + +D G Sbjct: 59 GIS---GGPHDDDQPILLTTGTAT---ADCVVSMDGAEVAPDEVGEAARVMILFDGNDDG 112 Query: 120 SLEWGRAHWRSLKNS 134 ++E R WR++ + Sbjct: 113 AVERAREQWRTMTGA 127 >gi|89070354|ref|ZP_01157661.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus HTCC2516] gi|89044001|gb|EAR50176.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus HTCC2516] Length = 151 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 5/140 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY ++ E L +LL+ G R V+ S + L+E LW +DGFLPH Sbjct: 1 MGAAYFYHLTRDPLERTLPMLLEKARTVGWRCEVRATSRALLARLDEQLWLHPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + N + V+ A + +V E+ + + D G Sbjct: 61 GLA---GGPHDADQPVLLT-DTRGTNNAACLLAVEGAEVSAEEVQALERTCILFDGADPG 116 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 +++ R W L ++G A Sbjct: 117 AVQIARGQWARLTDAGCAAQ 136 >gi|254418859|ref|ZP_05032583.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp. BAL3] gi|196185036|gb|EDX80012.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp. BAL3] Length = 152 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 6/135 (4%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 + FY ++ + L LL+ E+G R ++ D ++E LW++ + FLPHG Sbjct: 5 PEIWFYHLERSTLDQVLPTLLEKTLERGWRALIKSAHAHRLDDVDERLWSFHDESFLPHG 64 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + QPVLL+ S N N + F+VD+A + + + +E+ I + D+ + Sbjct: 65 RA---DQPHADRQPVLLSESGENLNGAQALFIVDDAELGVTE--GFERCFIIFDGRDEPA 119 Query: 121 LEWGRAHWRSLKNSG 135 L++ R W++LK G Sbjct: 120 LQYARGRWKTLKEQG 134 >gi|254486570|ref|ZP_05099775.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101] gi|214043439|gb|EEB84077.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101] Length = 153 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLW-TWKKDGFLP 58 M FY + L +LL G RV+V+ V ++ LW +DGFLP Sbjct: 1 MGAAYFYHLTRRPLVETLTMLLGKAQGAGWRVAVRGTDAAVLAQMDAALWRQGPEDGFLP 60 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ G + QP+LLT S+ N ++ F + A + +V ++V + + +D Sbjct: 61 HGMA---GGPHDAAQPILLTTSADIPNGASCVFSIHGAEVSAAEVAALDRVCILFDGEDD 117 Query: 119 GSLEWGRAHWRSLKNSGYAPD 139 +L R W++LK +G + Sbjct: 118 IALNKARGQWKALKAAGASAQ 138 >gi|255264162|ref|ZP_05343504.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62] gi|255106497|gb|EET49171.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62] Length = 152 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY E L +L+ G RV V+ L+E LW FLPH Sbjct: 1 MGAAYFYHLTAAPLEQTLPMLIGKAQGAGWRVVVRGRDAARIVWLDEKLWAGDPTSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ GD + QPVLL + VD A + G+V E+V + + D Sbjct: 61 GIA---GGDHDADQPVLLRADTQTVIDG-CLMAVDGAEVTAGEVAACERVCILFDGLDGN 116 Query: 120 SLEWGRAHWRSLKNSG 135 +L R W++L ++G Sbjct: 117 ALARAREQWKALTDAG 132 >gi|296116650|ref|ZP_06835260.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC 23769] gi|295976862|gb|EFG83630.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC 23769] Length = 147 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY ++ E L LL + G+R V+CG + L++ LW +LPH Sbjct: 1 MAEVGFYHLTRSTLEQALPALLGRTLDAGRRAVVRCGDDARVKWLDDALWRATDPLWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G S+QP+ LT N +T FL+D + +E+V + + D+ Sbjct: 61 GTRALG---HESWQPIWLTAGEDVPNGATFAFLIDG--VSCTQPGLFERVFDLFDGHDEN 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W+ + +G+ Sbjct: 116 AVAAARQRWKVCREAGHT 133 >gi|254502537|ref|ZP_05114688.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii DFL-11] gi|222438608|gb|EEE45287.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii DFL-11] Length = 150 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 6/135 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 ++FY E L LLQ E+ +V VQ GS+ ++L+ +LWT++ D FLPHG Sbjct: 4 EVVFYHLLHKPLELALPELLQKCLERNWKVVVQTGSQERCNALDAHLWTYQDDSFLPHGT 63 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 ++ QP+ LT N N + +RFLVD A+ +D Y++ +++ + +DQG++ Sbjct: 64 KA---DGYAEHQPIYLTFEQDNPNEADVRFLVDRAA--PPTLDPYKRAIYMFDGNDQGAV 118 Query: 122 EWGRAHWRSLKNSGY 136 + R W+ K+SG+ Sbjct: 119 DEARTAWKEAKSSGF 133 >gi|182677642|ref|YP_001831788.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp. indica ATCC 9039] gi|182633525|gb|ACB94299.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp. indica ATCC 9039] Length = 156 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 8/137 (5%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY ++ E L LL+ E G R VQ SE L+++LW + FL HG Sbjct: 4 DIWFYHLQRHPIERVLPKLLEKSLEHGWRAIVQARSEERLAVLDQWLWVYSDASFLAHGR 63 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS----MHIGDVDYYEKVVFIINTDD 117 + + QPV LT N N + +R ++ A M Y +++ + N D Sbjct: 64 ACDGD---AVMQPVYLTTEMDNPNGARLRLFIEGADIVSLMQDPSSSLYARMIVLFNGHD 120 Query: 118 QGSLEWGRAHWRSLKNS 134 + L R W+ LK Sbjct: 121 EEELTIARRQWQDLKAR 137 >gi|260576759|ref|ZP_05844744.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2] gi|259021011|gb|EEW24322.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2] Length = 155 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY ++ E LL + G RV ++ L+E LW ++GFLPH Sbjct: 1 MVLVLFYHLTRSPVEATAAGLLSRALDLGWRVMLRGTDPARLALLDERLWLGPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLL ++ N + LVD A G+ + E+V + + +D Sbjct: 61 GLQ---GGPQDADQPVLLGTGAIG-NAAHALMLVDGAEPLTGEAEALERVWVLFDGNDPA 116 Query: 120 SLEWGRAHWRSLKNSG 135 +LE RA W++L G Sbjct: 117 ALETARAQWKTLTAQG 132 >gi|77463455|ref|YP_352959.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides 2.4.1] gi|77387873|gb|ABA79058.1| putative DNA polymerase III chi subunit [Rhodobacter sphaeroides 2.4.1] Length = 152 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M ++FY ++ E L +LL +G RV ++ ++L+ LW ++GFLPH Sbjct: 1 MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRVRLEALDLALWRVPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G++ G + QPVLL ++ N + L+D A + E+V + + D+ Sbjct: 61 GME---GGPHDAVQPVLLGTGAIG-NGAQALMLLDGAETQAAEAAPLERVWILFDGLDEA 116 Query: 120 SLEWGRAHWRSLKNSG 135 L R W++L +G Sbjct: 117 ELARARGQWKALTGAG 132 >gi|312114900|ref|YP_004012496.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC 17100] gi|311220029|gb|ADP71397.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC 17100] Length = 158 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 FY + + L VL++ +G R S++ S D+++ LWT+++D FLPHG Sbjct: 11 PEFWFYHLERQPLQAVLPVLVEKTLARGWRASLRFSSAERLDAIDTALWTYREDSFLPHG 70 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + QPV LT+ N N + + FL++ A + + + +V+ + + D + Sbjct: 71 TA---RDGHADRQPVFLTLEEANPNNAEVLFLLEGARE--SEPERFVRVIRLFDDPDDEA 125 Query: 121 LEWGRAHWRSLKNSG 135 R WR K +G Sbjct: 126 KAIAREEWRGAKAAG 140 >gi|315500010|ref|YP_004088813.1| DNA polymerase iii chi subunit holc [Asticcacaulis excentricus CB 48] gi|315418022|gb|ADU14662.1| DNA polymerase III chi subunit HolC [Asticcacaulis excentricus CB 48] Length = 149 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + L LL+ +KG + V + + L+++LW ++ + FLPH Sbjct: 1 MTQVWFYHLERTPLRAALPDLLEKTLQKGWKAYVLGEAGDMLVGLDQHLWAYRDEAFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G++ E ++ QPVLL S NAN + + F V ++M++ ++ Y++ + + D+ Sbjct: 61 GLESEPE---AARQPVLLGDSGGNANAADVLFSV--SAMNLPELSPYQRCLILFEGQDET 115 Query: 120 SLEWGRAHWRSLKNSG 135 L W RA W++LK Sbjct: 116 HLNWARAQWKALKARN 131 >gi|310816135|ref|YP_003964099.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25] gi|308754870|gb|ADO42799.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25] Length = 152 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F++ L VLL E+G RV ++ +L+ LW DGFLPH Sbjct: 1 MAEIQFFQLFDGPVAATLPVLLNRSLERGWRVILRGTDPARMAALDVDLWRRDDDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QPVLLT + VD A+ + E+VV I + D Sbjct: 61 GLA---GGPHDALQPVLLTTGDGLPDG-DCLICVDMATATPAECASLERVVLIFDGHDPQ 116 Query: 120 SLEWGRAHWRSLKNSG 135 +L+ R W++L G Sbjct: 117 ALDHARGEWKALTGQG 132 >gi|83593535|ref|YP_427287.1| DNA polymerase III subunit chi [Rhodospirillum rubrum ATCC 11170] gi|83576449|gb|ABC23000.1| DNA polymerase III, chi subunit [Rhodospirillum rubrum ATCC 11170] Length = 160 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M FY ++ E L LL + +R V GS D LN LWT+ +LPH Sbjct: 1 MSRFDFYHLQRSTLEDALPRLLARVRKGDQRAVVMAGSPERVDGLNSLLWTFDAGSWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G +G + QPV LTI N N + + L D + D + +++ + + D Sbjct: 61 GTARDGDG---ADQPVWLTIDEENPNGAEVLVLTDG--VWPSDPARFARILLLFDGGDDS 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R HW++++ +G+ Sbjct: 116 AVARARGHWKAMRENGHE 133 >gi|294678218|ref|YP_003578833.1| DNA polymerase III subunit chi [Rhodobacter capsulatus SB 1003] gi|294477038|gb|ADE86426.1| DNA polymerase III, chi subunit [Rhodobacter capsulatus SB 1003] Length = 150 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M L ++ ++ E + LL +G RV ++ S D L++ LW ++ FLPHG Sbjct: 1 MPALFYHVTQSPVEGVVETLLTRALAQGWRVELRGVSPERMDWLDQKLWLGPEEDFLPHG 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + G + QPVLLT S +D A + +V E+V + + D+ + Sbjct: 61 LA---GGPHDALQPVLLTTSPR-PEGRQAVMTLDGAEVTPAEVAAAERVWILFDGRDETA 116 Query: 121 LEWGRAHWRSLKNSGYAPD 139 + R W++L +G A Sbjct: 117 VARARDQWKALTGAGTAAQ 135 >gi|159043741|ref|YP_001532535.1| DNA polymerase III subunit chi [Dinoroseobacter shibae DFL 12] gi|157911501|gb|ABV92934.1| DNA polymerase III chi subunit HolC [Dinoroseobacter shibae DFL 12] Length = 151 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L VLL+ G RV V+ S + L+E LW ++GFLPH Sbjct: 1 MGAVYFYHMTRTPLDATLPVLLEKSLAAGWRVLVRGTSGAELERLDELLWLRPEEGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ GD + QPVLL + + A VD A + +V + + + D Sbjct: 61 GIAGGDR---DADQPVLLGVDAPLA-GREALICVDGAQVDPAEVAGLARASLLFDGGDAA 116 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 ++E R WR++ +G + Sbjct: 117 AVEAARGQWRAVTGAGLSAQ 136 >gi|254294284|ref|YP_003060307.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814] gi|254042815|gb|ACT59610.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814] Length = 169 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 4/137 (2%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 FY + E L LL+ +K RV + G L+ LWTWK D FLPH Sbjct: 16 GEWWFYHLERTSLEEALGPLLEKCLQKDWRVLI-VGDGDRLPKLDLGLWTWKADSFLPHA 74 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMH--IGDVDYYEKVVFIINTDDQ 118 G + QP+LL+ + AN + I L+D + D Y + + + + DD Sbjct: 75 RLGGRDEIDPMAQPILLSNTPEPANKADIIVLLDGKRLPNEPDDATQYIRCMVVFDGDDF 134 Query: 119 GSLEWGRAHWRSLKNSG 135 + + R+ ++ K++G Sbjct: 135 NARDTARSQFKGAKDAG 151 >gi|329850481|ref|ZP_08265326.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis biprosthecum C19] gi|328840796|gb|EGF90367.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis biprosthecum C19] Length = 149 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + + L LL+ +KG R V + +LN+ LW+++ D FL H Sbjct: 1 MPDIWFYHLETTPLDQALPDLLEKVAQKGWRAYVHGHEDDKISALNDRLWSYRPDSFLAH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + D QPVLL S AN + V + + DV E+ + + + +D Sbjct: 61 GRE---GDDLEGHQPVLLGTSGRMANKPQVYLSV--SPTDLPDVSGLERCLIVFDGNDAE 115 Query: 120 SLEWGRAHWRSLKNSG 135 L W R W+ LK +G Sbjct: 116 HLTWARGQWKQLKATG 131 >gi|114328867|ref|YP_746024.1| DNA polymerase III subunit chi [Granulibacter bethesdensis CGDNIH1] gi|114317041|gb|ABI63101.1| DNA polymerase III, chi subunit [Granulibacter bethesdensis CGDNIH1] Length = 149 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 7/139 (5%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY E L LL G+R V CG +L+ LW +LPH Sbjct: 1 MTEIGFYHLTRTGPEQALPQLLGRTLAAGERAMVLCGGPERVAALDTTLWLCPNPDWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G + ++ QP+ LT N + FL+D + + Y +V + + ++ Sbjct: 61 GTARSGD---AALQPIWLTAQDEAAPNGAHFLFLIDGTAS--ERLHDYTRVFDLFDGSNE 115 Query: 119 GSLEWGRAHWRSLKNSGYA 137 ++ R W+ KN+G+ Sbjct: 116 DAVAAARLRWKQAKNAGHT 134 >gi|119383655|ref|YP_914711.1| DNA polymerase III subunit chi [Paracoccus denitrificans PD1222] gi|119373422|gb|ABL69015.1| DNA polymerase III chi subunit, HolC [Paracoccus denitrificans PD1222] Length = 149 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 7/141 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + LFY ++ L +L+ + G RV ++ + +L+E LW ++GFLPH Sbjct: 1 MGSALFYHLTRSGPAQLLPMLIGKSLQAGWRVELRGRDRARQVALDEALWL--REGFLPH 58 Query: 60 GVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G+ G + QPVLLT+ AN + +D A + + E+ I + +D Sbjct: 59 GLA---GGPHDARQPVLLTVEGQAAANAARCLIALDGAEVSGAECLALERACLIFDGNDP 115 Query: 119 GSLEWGRAHWRSLKNSGYAPD 139 +LE RA WR+LK A + Sbjct: 116 EALERARAQWRALKAEDVAAE 136 >gi|218516793|ref|ZP_03513633.1| DNA polymerase III subunit chi [Rhizobium etli 8C-3] Length = 104 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 6/109 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L L+ E+G RV+VQ RD+L+ +LWT++++ FLPH Sbjct: 1 MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEK 108 G DE DF+ QPVLLT++S NAN +T+RF+VD A D YE+ Sbjct: 61 GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YER 104 >gi|332558332|ref|ZP_08412654.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N] gi|332276044|gb|EGJ21359.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N] Length = 152 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M ++FY ++ E L +LL +G RV ++ ++L+ LW +DGFLPH Sbjct: 1 MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRVRLEALDLALWRVPEDGFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G++ G + QPVLL ++ N + L+D A+ + E+V + + D+ Sbjct: 61 GME---GGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEA 116 Query: 120 SLEWGRAHWRSLKNSG 135 L R W++L +G Sbjct: 117 ELGRARGQWKALTGAG 132 >gi|221639313|ref|YP_002525575.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides KD131] gi|221160094|gb|ACM01074.1| DNA polymerase III chi subunit [Rhodobacter sphaeroides KD131] Length = 162 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 ++FY ++ E L +LL +G RV ++ ++L+ LW ++GFLPHG Sbjct: 12 GVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRARLEALDLALWRVPEEGFLPHG 71 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ G + QPVLL ++ N + L+D A+ + E+V + + D+ Sbjct: 72 ME---GGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEAE 127 Query: 121 LEWGRAHWRSLKNSG 135 L R W++L +G Sbjct: 128 LGRARGQWKALTGAG 142 >gi|258541817|ref|YP_003187250.1| DNA polymerase III subunit chi [Acetobacter pasteurianus IFO 3283-01] gi|256632895|dbj|BAH98870.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-01] gi|256635952|dbj|BAI01921.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-03] gi|256639007|dbj|BAI04969.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-07] gi|256642061|dbj|BAI08016.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-22] gi|256645116|dbj|BAI11064.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-26] gi|256648171|dbj|BAI14112.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-32] gi|256651224|dbj|BAI17158.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654215|dbj|BAI20142.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO 3283-12] Length = 148 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + L LL G++ +V C S+ + D L++ LW +LPH Sbjct: 1 MTQIGFYHLTRTSVTEALPKLLARTLASGQKAAVWCASKPMLDDLDKALWKVTTPTWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + D QP+ L++ N + FL++ S D+ +E+V + + D+ Sbjct: 61 GREGIACPD---LQPIWLSMGEDTPNNARFLFLLENRS--FPDLAAFERVFDLFDGHDEE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W + K +G+ Sbjct: 116 AVAAARTRWSAAKAAGHE 133 >gi|329114406|ref|ZP_08243168.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001] gi|326696482|gb|EGE48161.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001] Length = 148 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + L LL G++ +V C S+ + D L++ LW +LPH Sbjct: 1 MTQIGFYHLTRTSVTEALPKLLARTLASGQKAAVWCASKPMLDDLDKTLWKVTTPTWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + D QP+ L++ N + FL++ S D+ +E+V + + D+ Sbjct: 61 GREGIACPD---LQPIWLSMGEDAPNAARFLFLLENRS--FPDLADFERVFDLFDGHDEE 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W + K +G+ Sbjct: 116 AVAAARTRWSAAKAAGHE 133 >gi|126462310|ref|YP_001043424.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17029] gi|126103974|gb|ABN76652.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC 17029] Length = 148 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 5 LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 +FY ++ E L +LL +G RV ++ ++L+ LW +DGFLPHG++ Sbjct: 1 MFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRARLEALDLALWRVPEDGFLPHGME- 59 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 G + QPVLL I ++ N + L+D A+ + E+V + + D+ L Sbjct: 60 --GGPHDAAQPVLLGIGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEVELAR 116 Query: 124 GRAHWRSLKNSG 135 R W++L +G Sbjct: 117 ARGQWKALTGAG 128 >gi|163792840|ref|ZP_02186816.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199] gi|159181486|gb|EDP65998.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199] Length = 149 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY E L LL+ + G+R V GS+ +LN LWT++ +LPH Sbjct: 1 MAEIGFYHLTATPLERALPKLLERTLDTGQRAVVLAGSDERVQALNGLLWTYEDRSWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + F QP+ L+ N N + FL D + I D+ + +V + + D Sbjct: 61 GSS---KDGFDEDQPIWLSAVEGNPNGAAFLFLTDG--VTIDDLTAWSRVFDLFDGRDDA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W++ ++ G++ Sbjct: 116 AVAAARTRWKAARDGGHS 133 >gi|114798143|ref|YP_760967.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC 15444] gi|114738317|gb|ABI76442.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC 15444] Length = 156 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 2 RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 FY ++ E LLQ E G RV L+ LWT+ FLPHG Sbjct: 6 PEWWFYHLSRSALEEAAAPLLQKCLEVGWRVLAVSPRAERLAKLDAVLWTFDDASFLPHG 65 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 D + QPVLL+ NAN++ L+D + +++ + + D G+ Sbjct: 66 QADAPGLDV-ARQPVLLSAKLTNANSADALMLMDGVEAPVDV--AFKRCMVMFEDADTGT 122 Query: 121 LEWGRAHWRSLKNSG 135 RA +++ K++G Sbjct: 123 RNKARAQFKAAKDAG 137 >gi|83945298|ref|ZP_00957647.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633] gi|83851468|gb|EAP89324.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633] Length = 149 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M L FY +N + L LL E+G R V E D L+ +LWT++++ FLPH Sbjct: 1 MAELWFYHLENASVDEALPELLTKLMERGGRAVVCSQEETRLDHLDSHLWTFREESFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + QP++L+ + N N++++ F +D A GDV +++VV + D+ Sbjct: 61 GRA---DAEHVEHQPIVLSDRTDNPNSASMLFCLDGAD--PGDVSAWDRVVVMFEASDET 115 Query: 120 S 120 S Sbjct: 116 S 116 >gi|146277170|ref|YP_001167329.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17025] gi|145555411|gb|ABP70024.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC 17025] Length = 158 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 5 LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 +FY ++ E L +LL +G RV ++ ++L+ LW +DGFLPHG++ Sbjct: 1 MFYHLTRSSAEDTLRLLLPRALAQGWRVMLRGTDRGRLEALDLALWRVPEDGFLPHGME- 59 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 G + QPVLL ++ N + L+D A + E+V + + D+G L Sbjct: 60 --GGPQDAAQPVLLGTGAIG-NGAQALMLLDGAETDAAEAGPLERVWILFDGLDEGQLVH 116 Query: 124 GRAHWRSLKNSG 135 R W++L +G Sbjct: 117 ARGQWKALTGAG 128 >gi|162149088|ref|YP_001603549.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus PAl 5] gi|209545169|ref|YP_002277398.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus PAl 5] gi|161787665|emb|CAP57261.1| putative DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] gi|209532846|gb|ACI52783.1| DNA polymerase III chi subunit HolC [Gluconacetobacter diazotrophicus PAl 5] Length = 148 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL + G+R ++CG +++E LW +LPH Sbjct: 1 MAEIGFYHLTRTPVEQALPALLGRTLDAGRRAVLRCGDAARVKAMDEALWQSADPVWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G + QP+ LT N +T F +D + D +E+V + + D Sbjct: 61 GSAAMGHG---ALQPIWLTDGPDVPNGATYLFAIDG--VVCPDAGTFERVFDLFDGSDAD 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 ++ R W + + +G+ Sbjct: 116 AVAAARRRWVTCREAGHT 133 >gi|218682145|ref|ZP_03529746.1| DNA polymerase III subunit chi [Rhizobium etli CIAT 894] Length = 102 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/91 (47%), Positives = 63/91 (69%), Gaps = 5/91 (5%) Query: 47 YLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY 106 +LWT++++ FLPHG+ DEGDF+ QPVLLT++S NAN +T+RF++D A V+ Y Sbjct: 1 HLWTFREESFLPHGI---DEGDFAESQPVLLTVTSGNANAATVRFIIDGAEPPP--VEAY 55 Query: 107 EKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 E++VF+ + DQ LE RA W+ LK G+ Sbjct: 56 ERIVFMFDGHDQEQLEAARAQWKKLKGEGHN 86 >gi|296535102|ref|ZP_06897348.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957] gi|296264571|gb|EFH10950.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957] Length = 153 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L LL G R V+ G SL+ LW + +LPH Sbjct: 1 MSEIGFYHLTRTPLEAALPKLLGRVLSLGGRAVVKLGDAARLASLDASLWLCQDPDWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G + + QP+ LT+ N + FL D A + +E+V + + D+ Sbjct: 61 GSAASGQ---AELQPIWLTLQDEAPNGARYLFLADGAES--AQLGDFERVFDLFDGQDE 114 >gi|58038767|ref|YP_190731.1| DNA polymerase III subunit chi [Gluconobacter oxydans 621H] gi|58001181|gb|AAW60075.1| DNA polymerase III, chi subunit [Gluconobacter oxydans 621H] Length = 147 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 6/136 (4%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY + E L LL + G+R V+C +L+ LW + +LPHG Sbjct: 2 DIGFYHLTRTPLEEALPALLGRTLDAGERAVVRCPDAAAVMALDAALWACRDPVWLPHGT 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + QP+ LT N + F VD A + + ++ + + + S+ Sbjct: 62 AKSG---HAVRQPIWLTEGEDVPNEARFLFRVDGAGS--DEFAPFTRIFDLFDGGNPQSV 116 Query: 122 EWGRAHWRSLKNSGYA 137 + R W ++K+ G+ Sbjct: 117 QRARQRWVAMKSFGHN 132 >gi|84516311|ref|ZP_01003671.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis SKA53] gi|84510007|gb|EAQ06464.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis SKA53] Length = 156 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%) Query: 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + E L +LL +G RV V+ + L+ LW D FLPH Sbjct: 1 MGAVFFYELQGAPLETTLPMLLDKARGQGWRVLVRGTDPALLAQLDAALWQGPVDHFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G+ G + QP+LL L A V A++ + + + ++ + Sbjct: 61 GLA---GGPHDADQPILL--GDLPAAGFACVMAVGGAAVSAEEALLLARACILFDSA-EH 114 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 + R W++L ++G A Sbjct: 115 AKAQARLQWKTLTDAGIAAQ 134 >gi|124267130|ref|YP_001021134.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1] gi|124259905|gb|ABM94899.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1] Length = 144 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 1/137 (0%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + LL Y++G RV+V S L+ LWT+ F+PH Sbjct: 1 MTEINFHHGAADPLAHACRLLTKAYQRGARVAVTASSSERLAQLDVMLWTYDPLAFVPHA 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 P + + A+ LV+ + +E++ I+ D Sbjct: 61 RLRAGAAPAERLAPTPIWLLDRAADAPHHEVLVNLGPEVPAGFESFERLFEIV-GKDDEE 119 Query: 121 LEWGRAHWRSLKNSGYA 137 GR WR ++ GY Sbjct: 120 RRAGRQRWRYFESRGYE 136 >gi|294084198|ref|YP_003550956.1| DNA polymerase III subunit chi [Candidatus Puniceispirillum marinum IMCC1322] gi|292663771|gb|ADE38872.1| DNA polymerase III, chi subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 150 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY + D E LL+LL+ GK+ + C +L+ LWT + D + H Sbjct: 1 MSKIDFYHLTQTDMETVLLMLLKKTLAAGKKALILCPQPA-ASALDTDLWTREPDSWFAH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSL-NANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G+D D D + + ++ N + FL+ + ++ +E+V + + + Sbjct: 60 GLDDADGQDIAK---IWISTDMAVNPIKAEFVFLLHGS--VPAEISQFERVFNLFDGRSE 114 Query: 119 GSLEWGRAHWRSLKNSG 135 ++ R W+S + G Sbjct: 115 AQVQHARIQWKSWADLG 131 >gi|288940946|ref|YP_003443186.1| DNA polymerase III subunit chi HolC [Allochromatium vinosum DSM 180] gi|288896318|gb|ADC62154.1| DNA polymerase III chi subunit HolC [Allochromatium vinosum DSM 180] Length = 143 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + D + L++ + RV + C L+ LWT +++ F Sbjct: 1 MTRVDFYSLEPDSRGDRFILACRLVERIRAQDLRVLILCPDREEARHLDRLLWTMRQESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG+ + D P+L+++ + + L++ + ++ +E++ +++ + Sbjct: 61 LPHGLVGTVDTD---LTPILISLDGASEHG--CPVLLNLSRALPAGLERFERLCDLVD-N 114 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D + GR +R+ + GY PD Sbjct: 115 DPAVRQAGRERFRAYRERGYEPD 137 >gi|289209276|ref|YP_003461342.1| DNA polymerase III subunit chi [Thioalkalivibrio sp. K90mix] gi|288944907|gb|ADC72606.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. K90mix] Length = 139 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY ++ L + +G RV + GS + +L+E+LWT++ F Sbjct: 1 MTHVSFYLLQDPAPEARLRFTCRLAKKASGQGHRVHIHTGSPELTRTLDEWLWTFEDTTF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH DV + V +++ +A + L++ A+ +E+V I+ Sbjct: 61 LPHSTDVRNTD-------VPVSLHEAHAPSDRCDVLINLAADVPEYCGRFERVADIVGG- 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 ++ E GRA +R K GY Sbjct: 113 EESEREAGRARYRYFKERGYP 133 >gi|330993936|ref|ZP_08317866.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1] gi|329758882|gb|EGG75396.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1] Length = 148 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FY ++ L LL +R ++C + ++E LW +LPH Sbjct: 1 MAQIDFYHLTRSTALAVLPELLGRVLASDRRAVIRCATAARAQEIDEGLWRATSPLWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 G G +QP+ LT N +T F++D + + D+ +E+V + + D+ Sbjct: 61 GTQAMGHGP---WQPIWLTAGDDVPNGATFLFVLDG--VEVSDLSPFERVFEVFDGHDE 114 >gi|117925960|ref|YP_866577.1| DNA polymerase III subunit chi [Magnetococcus sp. MC-1] gi|117609716|gb|ABK45171.1| DNA polymerase III, chi subunit [Magnetococcus sp. MC-1] Length = 157 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 4 LLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY+ D E LL +L Y G RV + + L+E+LW D FLPH Sbjct: 11 VRFYQLATDSRERALLKILNKVYGMGLRVCIVVEDRQQAQGLDEHLWRHPPDSFLPHATS 70 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 V F QP+L++ ++ N +T+ ++ + + ++D ++ VV + DD + Sbjct: 71 V---DPFPEAQPILISEQPVDPNGATVVVML--TPVPLENLDQFDTVVDFVP-DDPQAKR 124 Query: 123 WGRAHWRSLKNSGY 136 R ++ K++ Sbjct: 125 ASRLRYKHYKDAQC 138 >gi|319944266|ref|ZP_08018542.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis ATCC 51599] gi|319742561|gb|EFV94972.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis ATCC 51599] Length = 146 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L++ ++ G +V V C R S + LW + F+PH Sbjct: 1 MTQVDFHFNVPDTGRYGCRLVRKAWQAGHKVVVYCEDTRRLASFDRLLWEFAPLSFIPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + PVLLT S + S + LV+ Y +VV ++ D S Sbjct: 60 --VSVRHPLAERTPVLLTASDADVPASHRQVLVNLGERMPPAFADYARVVELV-GTDAQS 116 Query: 121 LEWGRAHWRSLKNSGYAP 138 + RA +RS + GY P Sbjct: 117 RQAARARFRSYREQGYTP 134 >gi|304321942|ref|YP_003855585.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503] gi|303300844|gb|ADM10443.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503] Length = 145 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M +LFY + E L VLL+ + R V+ E ++ LWT+ D FLPH Sbjct: 1 MTEILFYHCERARPEAVLPVLLERSLARDWRAVVRLPDEAAVRYWDDALWTYADDSFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 G G ++ QP+ LT I F + A + E++V + + D Sbjct: 61 G-----AGPPAADQPIWLTADETLPPGRQILFSL-VAEGVEKGGEGLERIVLLFDED 111 >gi|189184262|ref|YP_001938047.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str. Ikeda] gi|189181033|dbj|BAG40813.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str. Ikeda] Length = 169 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 12/144 (8%) Query: 4 LLFY-RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY + L LL+ Y ++ +++N LW++ F+PHG Sbjct: 5 INFYCTLTELFNQTLCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCS 64 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEA--------SMHIGDVDYYEKVVFIIN 114 + E S QP+ +T + N N + I LV + +I +E+++ I Sbjct: 65 IDPE---PSSQPIYITTNYENPNQAKILVLVILSYNCCNADYDNNISYFQQFERILIIFK 121 Query: 115 TDDQGSLEWGRAHWRSLKNSGYAP 138 +D +++ ++ LK GY P Sbjct: 122 ENDNKLIDYMNNYYHRLKQDGYLP 145 >gi|95929634|ref|ZP_01312376.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans DSM 684] gi|95134331|gb|EAT15988.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans DSM 684] Length = 139 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 4 LLFYRFKNDWEYNLLVLL-QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + F + + L LL ++ + + KRV + + +L+ ++WTW K FLPH Sbjct: 5 VEFIKLNKPEKAKCLCLLAEEFFAQSKRVLILVEDDNQALTLDRFMWTWNKGSFLPH--- 61 Query: 63 VGDEGDFSSF-QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 V D G + + + LN+N +++ L+ + + ++ V+ T DQ + Sbjct: 62 VWDNGAVECHEEAIAIGTRELNSNGASV--LIAARPCSVEFMRQFKHVIEFAETYDQALV 119 Query: 122 EWGRAHWRSLKNSGYAP 138 E R +R+ + G P Sbjct: 120 EAARGRFRAWRECGCEP 136 >gi|74316597|ref|YP_314337.1| DNA polymerase III subunit chi [Thiobacillus denitrificans ATCC 25259] gi|74056092|gb|AAZ96532.1| putative DNA polymerase III chi subunit [Thiobacillus denitrificans ATCC 25259] Length = 143 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M ++FY F D + Y +GK+V + V +++ LWT GF+PH Sbjct: 1 MTEIIFYTFAEDRLDVARRVAAKAYGQGKQVMIYAPDAAVAGAVDRMLWTTPALGFVPHA 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 D ++ PVL+ + + + +D A +E++V I+ D Sbjct: 61 R---DSDALAAETPVLIGADAGALRHADVMINLDSA--QPPAFGRFERLVEIV-GTDDAE 114 Query: 121 LEWGRAHWRSLKNSGYA 137 E GRA +R ++ GYA Sbjct: 115 REQGRARYRFYQSRGYA 131 >gi|56552204|ref|YP_163043.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis ZM4] gi|56543778|gb|AAV89932.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis ZM4] Length = 148 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 4 LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY + E L + + K++ V ++ ++YLW ++ FLPHG Sbjct: 5 VDFYHLLSAKLENILPRIAEKTLSSDKKLLVVVPDDQQARYWDDYLWRYEDTSFLPHGRV 64 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 G + + PVL++ + N ++ L D + + +E+V + D+ +++ Sbjct: 65 GGGD---EAEHPVLISTAMEAVNQASYIALTDG--LWRAEALNFERVFYFF---DEIAVQ 116 Query: 123 WGRAHWRSLKN 133 R WRSLKN Sbjct: 117 QARQAWRSLKN 127 >gi|241761722|ref|ZP_04759809.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374030|gb|EER63563.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 148 Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 4 LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY + E L + + K++ V ++ ++YLW ++ FLPHG Sbjct: 5 VDFYHLLSAKLENILPRIAEKTLSSDKKLLVVVPDDQQARYWDDYLWRYEDTSFLPHGRV 64 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 G + + PVL++ + N ++ L D + + +E+V + D+ +++ Sbjct: 65 GGGD---EAEHPVLISTAMEAVNQASYIALTDG--LWRAEALNFERVFYFF---DEIAVQ 116 Query: 123 WGRAHWRSLKN 133 R WRSLKN Sbjct: 117 QARQAWRSLKN 127 >gi|260752287|ref|YP_003225180.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551650|gb|ACV74596.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 148 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 4 LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY + E L + + K++ V ++ ++YLW ++ FLPHG Sbjct: 5 VDFYHLLSAKLENILPRIAEKTLSSDKKLLVIVPDDQQARYWDDYLWRYEDTSFLPHGRV 64 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 G + + PVL++ + N ++ L D + + +E+V + D+ +++ Sbjct: 65 GGGD---EAEHPVLISTAMEAVNQASYIALTDG--LWRAEALNFERVFYFF---DEIAVQ 116 Query: 123 WGRAHWRSLKN 133 R WRSLKN Sbjct: 117 QARQAWRSLKN 127 >gi|167585750|ref|ZP_02378138.1| DNA polymerase III chi subunit HolC [Burkholderia ubonensis Bu] Length = 138 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++L A + L++ + +E+++ ++ ++ Sbjct: 59 --CGIDSQHAADTPIVLAADLDKA--PHHQVLLNLGAAVPAQFARFERLLEVV-GNEPAE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LAAGRERYRFYRDRGYA 130 >gi|77163822|ref|YP_342347.1| DNA polymerase III chi subunit, HolC [Nitrosococcus oceani ATCC 19707] gi|254436187|ref|ZP_05049694.1| DNA polymerase III, chi subunit superfamily [Nitrosococcus oceani AFC27] gi|76882136|gb|ABA56817.1| DNA polymerase III chi subunit, HolC [Nitrosococcus oceani ATCC 19707] gi|207089298|gb|EDZ66570.1| DNA polymerase III, chi subunit superfamily [Nitrosococcus oceani AFC27] Length = 143 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 10/143 (6%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L++ Y G +V +Q + +++ LWT+++ F Sbjct: 1 MTKVDFYLLTSRQPQASKRFTCKLIEKVYRLGHQVYIQVEDQAQAQEMDDLLWTFRQGSF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + +E + PVL+ + L++ + +++V +I Sbjct: 61 VPHALVNSEEATGT---PVLI--GYDGEPGGKLELLINLGAEVPAFFSRFQRVAEVI-GP 114 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D+ GR +R ++ G + + Sbjct: 115 DETHRHAGRQRYRYYRDHGCSLE 137 >gi|148261397|ref|YP_001235524.1| DNA polymerase III subunit chi [Acidiphilium cryptum JF-5] gi|326404886|ref|YP_004284968.1| putative DNA polymerase III chi subunit [Acidiphilium multivorum AIU301] gi|146403078|gb|ABQ31605.1| DNA polymerase III chi subunit, HolC [Acidiphilium cryptum JF-5] gi|325051748|dbj|BAJ82086.1| putative DNA polymerase III chi subunit [Acidiphilium multivorum AIU301] Length = 155 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 7/120 (5%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M L FY E L LL G R V+ ++L+ LW +LPH Sbjct: 1 MAQLGFYHLTRTGLEAALPALLARTLAAGARAVVRGTDPARIEALDAALWLAPGVDWLPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G G QPV LT N + FLVD A+ D+ +E+V + + +D Sbjct: 61 GTAAMGHGP---DQPVWLTTGDDVPNDARFLFLVDGAT---ADLARFERVFDLFDGNDPD 114 >gi|300113103|ref|YP_003759678.1| DNA polymerase III subunit HolC [Nitrosococcus watsonii C-113] gi|299539040|gb|ADJ27357.1| DNA polymerase III chi subunit HolC [Nitrosococcus watsonii C-113] Length = 143 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 10/140 (7%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + Y G ++ +Q ++ ++E LWT+++ F Sbjct: 1 MTKVDFYLLTSHQPQASKRFACKLTEKAYRLGHQIYIQTENQAQAQEMDELLWTFRQGSF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + +E D S PVL+ + L++ + +++V II Sbjct: 61 VPHALINSEEADES---PVLI--GYEREPEGKLELLINLCAEVPAFFSRFQRVAEII-GQ 114 Query: 117 DQGSLEWGRAHWRSLKNSGY 136 D+ GR +R ++ G Sbjct: 115 DENHRHAGRQRYRYYRDHGC 134 >gi|292493014|ref|YP_003528453.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4] gi|291581609|gb|ADE16066.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4] Length = 143 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 10/143 (6%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + E L + Y G R+ +Q + +++ LWT+++ F Sbjct: 1 MAKVDFYLLTSRQPQIRERFACKLTEKAYRLGHRIYIQVEDQEQAQKMDDLLWTFRQGSF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + +E +S PVL+ S + L++ + ++ +V II+ Sbjct: 61 VPHALMNTEE---ASETPVLIGYGGEPE--SEMDLLINLCAEVPRFFSHFPRVAEIID-Q 114 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D+ + GR +R ++ G + + Sbjct: 115 DENNRHAGRQRYRDYRDQGCSLE 137 >gi|311694205|gb|ADP97078.1| DNA polymerase III chi subunit, HolC [marine bacterium HP15] Length = 170 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 9/138 (6%) Query: 5 LFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 F+ + L+ +++G RV V C + + + L++ LW + D F+PH Sbjct: 30 WFHILAQNTPAARNLHAAKLVDKAWQQGDRVCVVCDTMQHAEELDDLLWNFSPDAFIPHS 89 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V V D S +L + T+ L ++ D D ++++ + + +D Sbjct: 90 V-VPDSATTCSDPVGILLCPPAPEDWDTVIIL---SATLPADADRFKRLALVAH-NDPNV 144 Query: 121 LEWGRAHWRSLKNSGYAP 138 L R+H++ L+ G P Sbjct: 145 LNQARSHFKQLRALGIEP 162 >gi|161524008|ref|YP_001579020.1| DNA polymerase III subunit chi [Burkholderia multivorans ATCC 17616] gi|189351231|ref|YP_001946859.1| DNA polymerase III subunit chi [Burkholderia multivorans ATCC 17616] gi|221199309|ref|ZP_03572353.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2M] gi|221205789|ref|ZP_03578804.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2] gi|221211526|ref|ZP_03584505.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD1] gi|160341437|gb|ABX14523.1| DNA polymerase III chi subunit HolC [Burkholderia multivorans ATCC 17616] gi|189335253|dbj|BAG44323.1| DNA polymerase III chi subunit [Burkholderia multivorans ATCC 17616] gi|221168887|gb|EEE01355.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD1] gi|221174627|gb|EEE07059.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2] gi|221180594|gb|EEE12997.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2M] Length = 138 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVVA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSAHAAGTPIVLAADLDKAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LAAGRERYRFYRDRGYA 130 >gi|194290550|ref|YP_002006457.1| DNA polymerase III subunit chi [Cupriavidus taiwanensis LMG 19424] gi|193224385|emb|CAQ70396.1| DNA POLYMERASE III, CHI SUBUNIT [Cupriavidus taiwanensis LMG 19424] Length = 144 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L++ Y G++V + L+ LWT+ FLPH Sbjct: 1 MTRIDFHSNVPDVLGYVCRLVRKAYGAGQKVVIHGA-PAQLADLDARLWTFSALDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G E ++ P+LL ++ + L++ A +E+++ ++ D + Sbjct: 59 --CGLESPNAAVTPILLAATTEGV--PHHQLLINLAEEAPAQFASFERLIEVVGAGD-AA 113 Query: 121 LEWGRAHWRSLKNSGYA 137 E GR +R + GY Sbjct: 114 REAGRQRYRFYRERGYP 130 >gi|82701878|ref|YP_411444.1| DNA polymerase III chi subunit, HolC [Nitrosospira multiformis ATCC 25196] gi|82409943|gb|ABB74052.1| DNA polymerase III, chi subunit [Nitrosospira multiformis ATCC 25196] Length = 140 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY D + L+ KG +V + + +++ LWT+ F+PH Sbjct: 1 MTEIDFYSGGGDRLHTACRLVATAVRKGFKVMIYAPDMATVEQIDKLLWTFSATDFIPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + F PV L+ S N + L++ + + +++ I D+ + Sbjct: 60 --CQTDDKLAEFTPVTLSDSGRNPPHDDV--LLNLGPENPPFFSRFRRLIEIAGNTDEDT 115 Query: 121 LEWGRAHWRSLKNSGYA 137 + R +R ++ GY Sbjct: 116 -QAARKRYRFYQDRGYE 131 >gi|325527100|gb|EGD04515.1| DNA polymerase III subunit chi [Burkholderia sp. TJI49] Length = 138 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSAHAAGTPIVLAADLDRAPHHHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LAAGRERYRFYRDRGYA 130 >gi|220935309|ref|YP_002514208.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7] gi|219996619|gb|ACL73221.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7] Length = 147 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L+ Y G R+ V GS + L++ LWT++ F Sbjct: 1 MTRIDFYVLDDTDPGQRLRTACRLIGKAYGLGHRIHVHTGSRALSMQLDDLLWTFRDVSF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH V+ + PV + N I LV+ + +E+V I+N Sbjct: 61 IPHQVEGE-----DAECPVQICHDQEPQNAGDI--LVNLDTQVPLFFSRFERVAEIVN-Q 112 Query: 117 DQGSLEWGRAHWRSLKNSGY 136 D + GR +R K+ GY Sbjct: 113 DPAIRDAGRERYRFYKDRGY 132 >gi|149927921|ref|ZP_01916171.1| DNA polymerase III subunit chi [Limnobacter sp. MED105] gi|149823360|gb|EDM82593.1| DNA polymerase III subunit chi [Limnobacter sp. MED105] Length = 140 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ +D L++ Y G ++ V ++L++ LWT+ ++ FLPH Sbjct: 1 MTRIDFHLNVSDHLLYTCRLIRKAYGSGLKIVCYSTRPEVLENLDKLLWTFSEEDFLPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + P++LT + + + L++ +E++V I+ D+ + Sbjct: 60 --VVSGHPGVADTPIVLTDKADDI--AHYDLLINLDEQWPPFFARFERLVEIV-GTDEDN 114 Query: 121 LEWGRAHWRSLKNSGYA 137 R ++ K GY Sbjct: 115 KALARQRYKFYKERGYP 131 >gi|254491661|ref|ZP_05104840.1| DNA polymerase III, chi subunit superfamily [Methylophaga thiooxidans DMS010] gi|224463139|gb|EEF79409.1| DNA polymerase III, chi subunit superfamily [Methylophaga thiooxydans DMS010] Length = 142 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 9/143 (6%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY K+ + L + Y +G +V + + +L+E LW + + F Sbjct: 1 MTRVSFYILKSTQFEKRQAFACRLAEKAYHQGHQVYIHTDNAEQSAALDEALWAIRPESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH V D + PVL+ + L++ +++V +I+ + Sbjct: 61 VPHEVI---NTDADNQSPVLIGHKDSTPPR-LMDVLINLTEQQPLFFSQFDRVAEVIDDN 116 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D + GR ++ K GY D Sbjct: 117 DD-VKQAGRQRFQFYKQRGYELD 138 >gi|113868944|ref|YP_727433.1| DNA polymerase III subunit chi [Ralstonia eutropha H16] gi|113527720|emb|CAJ94065.1| DNA polymerase III chi subunit [Ralstonia eutropha H16] Length = 144 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L++ Y G++V + L+ LWT+ FLPH Sbjct: 1 MTRIDFHSNVPDVLGYVCRLVRKAYGAGQKVVIHGA-PAQLADLDARLWTFSALDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G E ++ P+LL ++ + L++ A +E+++ ++ D + Sbjct: 59 --CGLESPNAAVTPILLAATTEGV--PHHQLLINLADQAPAQFASFERLIEVVGAGD-AA 113 Query: 121 LEWGRAHWRSLKNSGYA 137 E GR +R + GY Sbjct: 114 REAGRQRYRFYRERGYP 130 >gi|114330615|ref|YP_746837.1| DNA polymerase III chi subunit, HolC [Nitrosomonas eutropha C91] gi|114307629|gb|ABI58872.1| DNA polymerase III, chi subunit [Nitrosomonas eutropha C91] Length = 142 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY D L ++G + V + + ++ LWT+ F+PH Sbjct: 1 MTQIDFYTGATDRLLIACRLCSKAVQQGLKTVVYIPDAELANRFDKLLWTFSPTSFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + PV+L + L++ + +++++VV I++ + Sbjct: 60 --CQADDKLAGVTPVILNNQLEMPEVAYFDVLLNLDAAIPSGFEHFKRVVEIVDEIEDSK 117 Query: 121 LEWGRAHWRSLKNSGY 136 L R +R + G+ Sbjct: 118 L-HARKRYRRYQELGH 132 >gi|148284078|ref|YP_001248168.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str. Boryong] gi|146739517|emb|CAM79223.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str. Boryong] Length = 146 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 11/125 (8%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y ++ +++N LW++ F+PHG E S QP+ +T + Sbjct: 2 EKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCSTDPE---PSSQPIYITTNY 58 Query: 82 LNANTSTIRFLVDEASMHI--------GDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 N N + I LV +S +E+++ I +D +++ ++ LK Sbjct: 59 ENPNQAKILVLVILSSNCCNANYDNNISYFQQFERILIIFKENDNKLIDYMNNYYHRLKQ 118 Query: 134 SGYAP 138 GY P Sbjct: 119 DGYLP 123 >gi|302879724|ref|YP_003848288.1| DNA polymerase III chi subunit HolC [Gallionella capsiferriformans ES-2] gi|302582513|gb|ADL56524.1| DNA polymerase III chi subunit HolC [Gallionella capsiferriformans ES-2] Length = 141 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY +D L + G R + + L++ LW + F+PH Sbjct: 1 MTKVDFYTGSSDKLRTACQLSHKAMQHGLRTVISLPDAVSCEMLDKLLWQYPDTAFIPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + PV L++ N L+ + +E+V+ II D+ Sbjct: 60 ----CDASSPDSAPVYLSLGEE--NFPHHDMLITLHNECTPFFSRFERVIEII-GTDEDD 112 Query: 121 LEWGRAHWRSLKNSGYA 137 GR ++ ++ GY Sbjct: 113 SRRGRERFKFYRDRGYE 129 >gi|302341449|ref|YP_003805978.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM 2075] gi|301638062|gb|ADK83384.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM 2075] Length = 145 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 15 YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQP 74 + L + +G RV + R L+ LWT+ F+PH + G + + +P Sbjct: 17 EAVARLAAWHWRQGARVLILAADPRQAAGLDALLWTFDPASFVPHALAGGAD---QADEP 73 Query: 75 VLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134 VL++ N N +++ + + +++V+ +I +D L R +R ++ Sbjct: 74 VLISQEPANLNHASVLIMTKPPASPQAVPPGFQRVIVLIPLEDGPDLHACRDCFRLARDQ 133 Query: 135 GYAP 138 G P Sbjct: 134 GLNP 137 >gi|270159213|ref|ZP_06187869.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968] gi|289165962|ref|YP_003456100.1| DNA polymerase III, chi subunit [Legionella longbeachae NSW150] gi|269987552|gb|EEZ93807.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968] gi|288859135|emb|CBJ13064.1| putative DNA polymerase III, chi subunit [Legionella longbeachae NSW150] Length = 144 Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 4 LLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY N+ LL+ Y KG +V V C +++ + L+E LWT+K+D F+PH Sbjct: 6 IDFYLLTNEQHNARWLLACRLLEKAYVKGHKVYVLCANKQDAEFLDELLWTFKEDSFIPH 65 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + I L++ ++ +++++ I+ + + Sbjct: 66 HLQGEGPEPPPPI-----QIGYEREPRGFNDILLNLSNNIPSFYSKFKRIMEIV-LNSEA 119 Query: 120 SLEWGRAHWRSLKNSGYA 137 E RAH+RS K +G Sbjct: 120 EKEQSRAHYRSYKANGCE 137 >gi|119503289|ref|ZP_01625373.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2080] gi|119460935|gb|EAW42026.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2080] Length = 139 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYNLL----VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L L+ + +G + + E ++L++ LWT++ F Sbjct: 1 MTRVDFYVVADASPGARLHVAARLVDKAHRQGHTLFIHTTDEAEAEALDDLLWTFRPGSF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + PV+L + L++ A +++V ++ T Sbjct: 61 IPHQLASDSSEG-----PVVLGWGQE--PSGHNDVLINLALSQPAFFSRFQRVAEVV-TQ 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D SLE R+ WR K+ GY Sbjct: 113 DATSLEAMRSAWRFYKDRGYP 133 >gi|120553892|ref|YP_958243.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8] gi|120323741|gb|ABM18056.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8] Length = 169 Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 9/140 (6%) Query: 5 LFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 F+ + L+ +++G RV V C +E L++ LW + + F+PH Sbjct: 29 WFHILAQNTHAARNLHAAKLVDKAWQQGDRVCVLCDTEEQALELDDLLWNFTPEAFIPHS 88 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + S +LL + T+ L +S D D Y ++ + + +D Sbjct: 89 IAKAATTPCSDPVGILL-YPPAAVDWDTVIVL---SSALPEDADQYRRLALVAH-NDPAV 143 Query: 121 LEWGRAHWRSLKNSGYAPDV 140 L R H++ L++ G V Sbjct: 144 LNQARGHYKQLRSLGIEARV 163 >gi|94497697|ref|ZP_01304265.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58] gi|94422914|gb|EAT07947.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58] Length = 145 Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY+ ++ E L + G R+ V G D +++ LW + FL HG Sbjct: 2 QVDFYQLSRDPVEQVLPAIAGRILAMGARLLVVAGEGDRLDRISQGLWAGPPESFLAHGR 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + QP+LL+ + N + L D + + +++ + + D ++ Sbjct: 62 TGEGGEAY---QPILLSDTCTAGNGARHIALADG--LWREEALGFDRAFYFFDAD---TI 113 Query: 122 EWGRAHWRSL-KNSGYAP 138 + RA WR+L K G P Sbjct: 114 DGARASWRTLSKAEGVEP 131 >gi|119899195|ref|YP_934408.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119671608|emb|CAL95521.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 145 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 4/135 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY D L+ G++V+V+ + L+ LWT + F+PH Sbjct: 1 MTKVQFYHNAPDQLALACELVAKAQAGGRQVAVRAADPAMARKLDLMLWTVEPLAFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + G + PV + +A L + A+ + + + V I + Sbjct: 60 --VMNGGPLADETPVQIGAPGSDARWPHADILFNLAADLAPGFEGF-RTVVEIVGRSEAE 116 Query: 121 LEWGRAHWRSLKNSG 135 RA W K G Sbjct: 117 KAPARARWTQYKTRG 131 >gi|257095658|ref|YP_003169299.1| DNA polymerase III subunit chi HolC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048182|gb|ACV37370.1| DNA polymerase III chi subunit HolC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 141 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY +D LL + + K V V +L+ +LW GFLPH Sbjct: 1 MTQVFFYHGASDRIVATATLLGKAFAQKKAALVYAPDAEVAAALDRHLWMHPPTGFLPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + + PVL+ F + A+ + ++ ++ Sbjct: 60 --VRSDSPLAGETPVLIASQLDVVPQDERLF--NLAAEVPPGFSRFASLIEVV-GHQDEE 114 Query: 121 LEWGRAHWRSLKNSGY 136 GR R K+ GY Sbjct: 115 RAAGRQRARFYKDRGY 130 >gi|94500492|ref|ZP_01307023.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65] gi|94427282|gb|EAT12261.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65] Length = 142 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M ++ FY + + L + +++G+++ V E+ L++ +W +K + F Sbjct: 1 MTSIDFYILGHSQQQARLSFACRLAEKAFKEGRQIYVHAQDEQQAKQLDDLMWEYKPESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH + G+ +S V + ++ + L++ S +++V+ I+ Sbjct: 61 LPHQIV----GEQASQTQVEIGWQDHPSHHFDV--LINLVSPQPSFFSRFDRVLEIV-IQ 113 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D+ SL RAH++ ++ GY Sbjct: 114 DETSLAQSRAHYKFYRDRGYE 134 >gi|110833355|ref|YP_692214.1| DNA polymerase III subunit chi [Alcanivorax borkumensis SK2] gi|110646466|emb|CAL15942.1| DNA polymerase III, chi subunit [Alcanivorax borkumensis SK2] Length = 148 Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 13/141 (9%) Query: 1 MRTLLFYRFKNDWEYNLLVLL----QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY E L ++G++V V C +E L+ W GF Sbjct: 10 MTEVTFYLSSKVGEGVRQALAWRIADKALKQGRQVYVHCQNEAHARQLDAQFWQSPPTGF 69 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH + + PVLL L++ + +++V +I+ Sbjct: 70 LPHALSSEGQA------PVLLGFGDD--PGHQHDVLINLSDGVPDFSSRFQRVAEMISG- 120 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D+ + GR +R ++ G+ Sbjct: 121 DEAERQQGRERFRFYRDRGFP 141 >gi|332530552|ref|ZP_08406490.1| DNA polymerase III subunit chi [Hylemonella gracilis ATCC 19624] gi|332039998|gb|EGI76386.1| DNA polymerase III subunit chi [Hylemonella gracilis ATCC 19624] Length = 151 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ +G RV V + L+ LWT+ + F+ H Sbjct: 1 MTEVAFHFNAPDKLAYACRLLRKAVMQGSRVVVTAP-AELLARLDVLLWTFSQTDFVAHV 59 Query: 61 VDVGDEGDFS------SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 + + PV+L + + + L++ S Y +V+ +++ Sbjct: 60 RLPMRHAPQAGMVTTLALTPVVLADDASAPDVPHRQVLLNLGSDMPRGFTTYARVIEVVS 119 Query: 115 TDDQGSLEWGRAHWRSLKNSGYA 137 DD+ + R W+S GYA Sbjct: 120 LDDED-RQLARDRWKSYTAQGYA 141 >gi|317401897|gb|EFV82504.1| hypothetical protein HMPREF0005_00536 [Achromobacter xylosoxidans C54] Length = 153 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 11/146 (7%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F D +++ Y G+R+ V C + + LW + F+PH Sbjct: 1 MTRIDFAFGAPDRLRMACQVVRKRYLAGQRLVVYCKEGSRLAAFDRMLWAFDDTSFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISS-------LNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 V ++ PV+LT A+ +L++ D +E+++ I+ Sbjct: 60 --VLANDPLAAETPVVLTAGDPWQAAQAAVADGQPQPWLLNLDDACPPGFDAFERLLEIV 117 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 +DD + R WR+ + +G+ P Sbjct: 118 -SDDPDDKQAARQRWRAYQGAGHTPQ 142 >gi|257487388|ref|ZP_05641429.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330989715|gb|EGH87818.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009016|gb|EGH89072.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 142 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + S PV+L + + + LV+ + +V ++ + Sbjct: 61 LPHG-----NAESDSDAPVVLGLGDDS--GAHEDLLVNLDLSIPAFFKRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|71734138|ref|YP_273423.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554691|gb|AAZ33902.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|330890528|gb|EGH23189.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. mori str. 301020] Length = 142 Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + + S PV+L + + + LV+ + +V ++ + Sbjct: 61 LPHG-----DAESDSDAPVVLGLGDDS--GAHEDLLVNLDLSIPAFFKRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|254251667|ref|ZP_04944985.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124894276|gb|EAY68156.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 138 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVVA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++LT + R L++ + +E+++ ++ +D Sbjct: 59 --CGVDSAHAASTPIVLTADLDK--SPHHRVLLNLGAAVPAQFARFERLLEVV-GNDPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|332184933|ref|ZP_08386682.1| DNA polymerase III chi subunit, HolC family protein [Sphingomonas sp. S17] gi|332014657|gb|EGI56713.1| DNA polymerase III chi subunit, HolC family protein [Sphingomonas sp. S17] Length = 146 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 9/133 (6%) Query: 3 TLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY + L V+ G R+ + G R +L+ LW D FLPH Sbjct: 2 QVDFYHLTMAPLDRLLPVIADRVMAGGGRLLIVSGDADQRAALDRQLWMVPADSFLPHAQ 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 S QPVL+ AN + L D + D +++ + D + Sbjct: 62 AGEGN---DSAQPVLIAAEVHPANGARHVALADG--LWRDDALTFDRAFHFFDGD---RI 113 Query: 122 EWGRAHWRSLKNS 134 R+ WR+L + Sbjct: 114 AEARSAWRALADR 126 >gi|320322890|gb|EFW78981.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea str. B076] Length = 142 Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + + S PV+L + + + LV+ + +V ++ + Sbjct: 61 LPHG-----DAESDSDAPVVLGLGDDS--GAHEDLLVNLDLSIPTFFKRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|320329801|gb|EFW85789.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea str. race 4] gi|330874248|gb|EGH08397.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea str. race 4] Length = 142 Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + + S PV+L + + + LV+ + +V ++ + Sbjct: 61 LPHG-----DAESDSNAPVVLGLGDDS--GAHEDLLVNLDLSIPTFFKRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|311104768|ref|YP_003977621.1| DNA polymerase III subunit chi [Achromobacter xylosoxidans A8] gi|310759457|gb|ADP14906.1| DNA polymerase III, chi subunit [Achromobacter xylosoxidans A8] Length = 154 Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 12/147 (8%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F D +++ Y G+R+ V C + + LW + F+PH Sbjct: 1 MTRIDFAFGAPDRLRTACQVVRKRYLAGQRLVVYCRDGSRLAAFDRMLWAFDDTSFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIR--------FLVDEASMHIGDVDYYEKVVFI 112 V ++ PV+LT + +L++ S + +E+++ I Sbjct: 60 --VLANDPLAAETPVVLTAGDPQQAAAAAGQGGQPQPSWLLNLDSDCPPGFEAFERLLEI 117 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPD 139 + +DD + R WR+ +G+ P Sbjct: 118 V-SDDPEDKQAARQRWRTYLTAGHTPQ 143 >gi|103487245|ref|YP_616806.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis RB2256] gi|98977322|gb|ABF53473.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis RB2256] Length = 149 Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%) Query: 1 MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + FYR ++ E L L G R+ V + R ++ LWT FLPH Sbjct: 1 MPRVDFYRLTRDPVERVLPALAARVLGNGDRLLVVAAAAMQRQDIDAALWTANPASFLPH 60 Query: 60 GVDVGDEGDFSSFQPVLL--TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 G + + +P+LL T+ + N ++ L D D +++ F+ D Sbjct: 61 GHAGTPD---EAIEPILLSGTLDTSPPNGASRLALADG--EWREDALAFDRTFFLF---D 112 Query: 118 QGSLEWGRAHWRSLKNS 134 ++ RA WR+L Sbjct: 113 NSRIDDARATWRALAAR 129 >gi|134093988|ref|YP_001099063.1| putative DNA polymerase III subunit chi [Herminiimonas arsenicoxydans] gi|133737891|emb|CAL60936.1| putative DNA polymerase III chi subunit, HolC [Herminiimonas arsenicoxydans] Length = 141 Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L + + +V + +L+E LWT+ + FLPH Sbjct: 1 MTRIDFHSNVPDKIAYACRLARKARKADFQVVILARDSAQLAALDEALWTFSEHDFLPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 VG + ++ +LLT + + L++ + +E++ ++ + D Sbjct: 60 --VGMDDPLAAQTAILLTTEQAMK-SPHHQILINLSDTPPEHFARFERMFEVV-SSDDAD 115 Query: 121 LEWGRAHWRSLKNSGYA 137 GR + K GY Sbjct: 116 KSSGRERYAYYKQRGYP 132 >gi|149378266|ref|ZP_01895978.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893] gi|149357463|gb|EDM45973.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893] Length = 157 Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 9/140 (6%) Query: 5 LFYRFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 F+ + L+ ++ RV V C + + L++ LW + D F+PH Sbjct: 17 WFHILAQNTPAARNLHTAKLVDKARQQRDRVGVVCDTMQQAQELDDLLWNFSPDAFIPHS 76 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + V D + +L + + T+ L ++ D D ++++ + + +D+ Sbjct: 77 I-VPDSATTCTDPVGILLCQPVAEDWDTVIIL---SATLPADADRFKRLALVAH-NDEAV 131 Query: 121 LEWGRAHWRSLKNSGYAPDV 140 L R+H++ L+ G P V Sbjct: 132 LGQARSHFKQLRALGIEPRV 151 >gi|114777970|ref|ZP_01452884.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1] gi|114551757|gb|EAU54309.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1] Length = 146 Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 32 SVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRF 91 V C L+E LWT + FL H V D + QP+LL S + N + Sbjct: 36 LVLCPDPGFAAQLDERLWTIHPESFLAHAVAGNDTAQN-ARQPILLATSIIRDNNPAV-- 92 Query: 92 LVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 L++ D+ + +V ++ D+G + R +R+ G P + Sbjct: 93 LINGGLEVPPDISGFAHLVDFVDGWDEGLKQAARERFRTYSQMGLDPKYL 142 >gi|297171527|gb|ADI22525.1| DNA polymerase III, chi subunit [uncultured Oceanospirillales bacterium HF0500_09M11] Length = 145 Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 8/141 (5%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M +LFY + E + + + + +R+ V C + ++ W GF Sbjct: 1 MTEILFYITEQAGEGVQTALARRIAEKAWRQSRRIYVHCRDDAHARDVDAAFWAQPATGF 60 Query: 57 LPHGVDVGDEGDFSSF-QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 LPH + D + PV++ L++ A +++V +I Sbjct: 61 LPHDLAGTPVADTPAAGTPVVVGHGDD--PGDHHDVLINLAPEVPDFATRFQRVAEMITG 118 Query: 116 DDQGSLEWGRAHWRSLKNSGY 136 D E GRA +R ++ G+ Sbjct: 119 -DGPLREAGRARFRFYRDRGF 138 >gi|330721310|gb|EGG99393.1| putative ABC transporter2C ATP-binding protein [gamma proteobacterium IMCC2047] Length = 142 Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 11/141 (7%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + + L++ Y++ R+ + SE L+ LW++K + F Sbjct: 1 MTRVDFYILADSESQARLQFVCRLVEKAYKQQHRIYIHTDSEATSKELDLLLWSFKVESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + GD S+ PV + LV+ ++ +E+ ++ Sbjct: 61 VPHHLL----GDDSASAPVAIGHGEDC--GDHHDVLVNLSANVPEFFSRFERCAEVVIQQ 114 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D+ L+ R H+ K GY Sbjct: 115 DEI-LQSTRQHFAFYKERGYP 134 >gi|92115037|ref|YP_574965.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens DSM 3043] gi|91798127|gb|ABE60266.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens DSM 3043] Length = 150 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 10/141 (7%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + KG R+ + E + L+E LWT+K + + Sbjct: 1 MTQVDFYILPDTTLDARLAFACRLAETIHRKGYRLHIHTEDETMARELDERLWTFKPESY 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH V D PV T+ + +++ +E+V IIN Sbjct: 61 LPHAVLGDDVSPEP---PV--TLGWEAPPAPGVEAMLNLHPEIPEWFSRFERVAEIINQH 115 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 Q L RA W++ K GY Sbjct: 116 -QDVLTAKRACWQTYKKRGYP 135 >gi|330962171|gb|EGH62431.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. maculicola str. ES4326] Length = 142 Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY L + + G +V + C R+ L+ LW +K + F Sbjct: 1 MTQVDFYILPTADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFKGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + + PV+L + + + LV+ + +V ++ + Sbjct: 61 LPHG-----DAESDHDAPVVLGLGAD--PGAHDDLLVNLDLSIPAFFSRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|330873096|gb|EGH07245.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963187|gb|EGH63447.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. actinidiae str. M302091] Length = 142 Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + + PV+L + + + LV+ + +V ++ + Sbjct: 61 LPHG-----DAESDHDAPVVLGLGDDS--GTHQDLLVNLDLSIPAFFTRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|28868481|ref|NP_791100.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato str. DC3000] gi|213968385|ref|ZP_03396529.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato T1] gi|301384651|ref|ZP_07233069.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato Max13] gi|302059575|ref|ZP_07251116.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato K40] gi|302133009|ref|ZP_07258999.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851719|gb|AAO54795.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213927023|gb|EEB60574.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato T1] gi|331015237|gb|EGH95293.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 142 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + + PV+L + + + LV+ + +V ++ + Sbjct: 61 LPHG-----DAESDHDAPVVLGLGDDS--GTHQDLLVNLDLSIPAFFKRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|297182281|gb|ADI18450.1| DNA polymerase III, chi subunit [uncultured Oceanospirillales bacterium HF4000_13G19] Length = 145 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 8/141 (5%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M +LFY + E + + + + +R+ V C + ++ W GF Sbjct: 1 MTEILFYITEQAGEGVQTALARRIAEKAWRQSRRIYVHCRDDAHARDVDAAFWAQPATGF 60 Query: 57 LPHGVDVGD-EGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 LPH + G + PV++ L++ A +++V +I Sbjct: 61 LPHDLAGAPVAGTPVAGTPVVVGHGDD--PGDHHDVLINLAPEVPDFATRFQRVAEMITG 118 Query: 116 DDQGSLEWGRAHWRSLKNSGY 136 D E GRA +R ++ G+ Sbjct: 119 -DGPLREAGRARFRFYRDRGF 138 >gi|148358633|ref|YP_001249840.1| DNA polymerase III subunit chi [Legionella pneumophila str. Corby] gi|148280406|gb|ABQ54494.1| DNA polymerase III, chi subunit [Legionella pneumophila str. Corby] Length = 144 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 4 LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY + L++ Y KG + V C +++ + L+E LWT+K D F+PH Sbjct: 6 VDFYLLASSLPESRWLVACRLIEKAYSKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + Q I L++ ++ +++V+ ++ ++ + Sbjct: 66 NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119 Query: 120 SLEWGRAHWRSLKNSGYA 137 E R H++ +N G A Sbjct: 120 EKEVSRLHYKEYRNKGCA 137 >gi|91782197|ref|YP_557403.1| DNA polymerase III subunit chi [Burkholderia xenovorans LB400] gi|296162278|ref|ZP_06845072.1| DNA polymerase III chi subunit HolC [Burkholderia sp. Ch1-1] gi|91686151|gb|ABE29351.1| Putative DNA polymerase III chi subunit [Burkholderia xenovorans LB400] gi|295887432|gb|EFG67256.1| DNA polymerase III chi subunit HolC [Burkholderia sp. Ch1-1] Length = 138 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L++ Y+ G+ V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLIRKAYQAGQPTIVLA-EPARLKAFDEQLWTFSPLDFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ P++L + + + L++ + +E+++ ++ + Sbjct: 59 --CMAGTPLAAQTPIVLASTLE--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHEE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LAAGRERYRFYRDRGYA 130 >gi|82914286|ref|XP_728786.1| cytosol aminopeptidase [Plasmodium yoelii yoelii str. 17XNL] gi|23485310|gb|EAA20351.1| cytosol aminopeptidase [Plasmodium yoelii yoelii] Length = 612 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 8/140 (5%) Query: 1 MRTLLFYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58 M + FY L + Y +G V + ++ L++ LWT+++ F+P Sbjct: 478 MTRVDFYLLPAGESLLSYACRLTEKAYRQGHTVFLVTDTDDEAAQLDDMLWTFRQGSFVP 537 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 H ++ P + + +++ S + +V+ ++ D Sbjct: 538 H----RAVTGHTAAGPCPVAVGREPPVGFD-DVMINLGSAVPEAFRRFRRVIELV-GPDD 591 Query: 119 GSLEWGRAHWRSLKNSGYAP 138 + R H+R ++ G P Sbjct: 592 AARALKREHFRHYRSEGLNP 611 >gi|254514077|ref|ZP_05126138.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3] gi|219676320|gb|EED32685.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3] Length = 142 Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY +N + L L + +++G RV + +E+ L+E LWT++ F Sbjct: 1 MTRVGFYIVENTDADSRTRLALRLTEKAHKRGHRVFINSENEQQARQLDELLWTFRPASF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH + D +S Q + + + L++ + + +++V ++N Sbjct: 61 LPHAL----CSDNASEQ-ICIGWGQEPQGHDDL--LINLQTRVPQFIGRFQRVAELVN-Q 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 + LE R WR + GYA + Sbjct: 113 EPARLEALRDSWRHYRERGYALE 135 >gi|226943295|ref|YP_002798368.1| DNA polymerase III subunit chi [Azotobacter vinelandii DJ] gi|226718222|gb|ACO77393.1| DNA polymerase III chi subunit, HolC [Azotobacter vinelandii DJ] Length = 142 Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G+R+ + C R++L+ LW++K + F Sbjct: 1 MPQVDFYILPSADPAARLDFACKLTEKAWRLGRRIYLHCQDAPQRETLDARLWSFKSEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG+ + + P+ L + S L++ A +E++ ++ Sbjct: 61 LPHGLF-----EEDADAPIALGLGDD--PGSHRDLLINLALSVPSFCARFERIAELVV-S 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + RA +R + GYA Sbjct: 113 EPVIRQATRASYRLYRERGYA 133 >gi|88703590|ref|ZP_01101306.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis KT71] gi|88702304|gb|EAQ99407.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis KT71] Length = 142 Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFK----NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + + L L + +++G RV + +E L+E LWT++ F Sbjct: 1 MTRVGFYIVENTDTSSRTRLALRLTEKAHKQGHRVFINSENEAQARELDELLWTFRPASF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH + D + + + A + L++ + +++V ++N Sbjct: 61 LPHALCSDDSSEQ-----ICIGWGQEPAGHDDL--LINLQLSVPDFIGRFQRVAELVN-Q 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 + LE R WR + GYA + Sbjct: 113 EPARLEALRHSWRHYRERGYALE 135 >gi|307611509|emb|CBX01183.1| hypothetical protein LPW_28821 [Legionella pneumophila 130b] Length = 144 Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 4 LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY + L++ Y KG + V C +++ + L+E LWT+K D F+PH Sbjct: 6 VDFYLLASSLPESRWLVACRLIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + Q I L++ ++ +++V+ ++ ++ + Sbjct: 66 NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119 Query: 120 SLEWGRAHWRSLKNSGYA 137 E R H++ +N G A Sbjct: 120 EKEVSRLHYKEYRNKGCA 137 >gi|312795339|ref|YP_004028261.1| DNA polymerase III, chi subunit [Burkholderia rhizoxinica HKI 454] gi|312167114|emb|CBW74117.1| DNA polymerase III, chi subunit (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 138 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 9/138 (6%) Query: 1 MRTLLFY-RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F+ + Y L + Y+ + + V G V + +E LWT+ F+PH Sbjct: 1 MTRVDFHTHVADPLSYA-CRLARKAYQAAQPLVVL-GEPAVLRAFDERLWTFSPLDFIPH 58 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + + PV+LT A L++ S +E+++ +I +D+ Sbjct: 59 ---CMADSALAGETPVVLTTDLDQA--PHYAILLNLGSAVPPQFARFERLLEVI-GNDEH 112 Query: 120 SLEWGRAHWRSLKNSGYA 137 L GR +R ++ GY Sbjct: 113 GLAAGRERYRFYRDRGYT 130 >gi|121997479|ref|YP_001002266.1| DNA polymerase III chi subunit, HolC [Halorhodospira halophila SL1] gi|121588884|gb|ABM61464.1| DNA polymerase III chi subunit, HolC [Halorhodospira halophila SL1] Length = 140 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 6 FYRF----KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY + E L + YE G V + + + L+ LWT+++ F+PH Sbjct: 3 FYILDGPGEAPRERFACRLAEKAYENGYGVLLLTEDDEQTERLDALLWTFRQGSFVPHAT 62 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 +G+ PV + A+ + L++ +++ +++ + L Sbjct: 63 LAARDGE-----PVAVGGDEHAADDA---VLINLTDRTPATWQARQRIAEVVDQR-EAVL 113 Query: 122 EWGRAHWRSLKNSGYAP 138 R +R K +G P Sbjct: 114 RASRQRYRIYKEAGCEP 130 >gi|237653451|ref|YP_002889765.1| DNA polymerase III subunit chi [Thauera sp. MZ1T] gi|237624698|gb|ACR01388.1| DNA polymerase III chi subunit HolC [Thauera sp. MZ1T] Length = 146 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 4/134 (2%) Query: 4 LLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 + FY D L + +G++V+++C L++ LWT F+PH V Sbjct: 5 VQFYHNTPDRLALAHELAAGAHARGRKVALRCTDATQLRRLDQALWTAVPLDFVPH---V 61 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 G ++ PV+L + L + A + + + ++V I D + Sbjct: 62 GVGSALAAETPVVLGAAGEPCPWPHADMLFNLADDVPAEAEGF-RMVVEIVGRDAAEVHA 120 Query: 124 GRAHWRSLKNSGYA 137 R W + + GY Sbjct: 121 ARLRWAAYRQRGYE 134 >gi|332524892|ref|ZP_08401079.1| DNA polymerase III, chi subunit [Rubrivivax benzoatilyticus JA2] gi|332108188|gb|EGJ09412.1| DNA polymerase III, chi subunit [Rubrivivax benzoatilyticus JA2] Length = 144 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M ++F+ + LL+ +G RV V +L+ LWT+ + F+PH Sbjct: 1 MAEVVFHTGIAEPLGFACRLLRKACRQGARVVVTAPGP-TLAALDRALWTFDERDFVPHL 59 Query: 61 V--DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 ++ P+ L LV+ + + +V+ I+ D Sbjct: 60 RVSAANAGTAQAARTPIWLVDGE--PPDQAPDILVNLGAEVPASTARFSRVIEIV-GDGP 116 Query: 119 GSLEWGRAHWRSLKNSGYAP 138 R WR+ K G+AP Sbjct: 117 DEAGAARERWRTWKAHGWAP 136 >gi|187922986|ref|YP_001894628.1| DNA polymerase III subunit chi [Burkholderia phytofirmans PsJN] gi|187714180|gb|ACD15404.1| DNA polymerase III chi subunit HolC [Burkholderia phytofirmans PsJN] Length = 138 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L++ Y+ G+ V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLIRKAYQAGQPTIVLA-EPARLKAFDEQLWTFAPLDFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ P++L S + + L++ + +E+++ ++ + Sbjct: 59 --CMAGTPLAAQTPIVLASSLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHEE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LAAGRERYRFYRDRGYA 130 >gi|54295471|ref|YP_127886.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens] gi|53755303|emb|CAH16797.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens] Length = 144 Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 4 LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY + L++ Y KG + V C +++ + L+E LWT+K D F+PH Sbjct: 6 VDFYLLASSLPESRWLVACRLIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + Q I L++ ++ +++V+ ++ ++ + Sbjct: 66 NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119 Query: 120 SLEWGRAHWRSLKNSGYA 137 E R H++ +N G A Sbjct: 120 EKEVSRLHYKKYRNKGCA 137 >gi|254242523|ref|ZP_04935845.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192] gi|126195901|gb|EAZ59964.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192] Length = 142 Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + +G RV + C E R L+ LW+++ + F Sbjct: 1 MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMRVYLHCADEAQRRELDGRLWSFRGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + + PV L + N L++ G V + +V ++ + Sbjct: 61 IPHSL-----AEEDAEAPVALGLGETPGN--HRDLLINLTLEAPGFVANFSRVAELVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + R +R + GY Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133 >gi|116051860|ref|YP_789297.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa UCBPP-PA14] gi|313109251|ref|ZP_07795219.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa 39016] gi|115587081|gb|ABJ13096.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|310881721|gb|EFQ40315.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa 39016] Length = 142 Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + +G RV + C E R L+ LW+++ + F Sbjct: 1 MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + + PV L + N L++ G V + +V ++ + Sbjct: 61 IPHSL-----AEEDAEAPVALGLGETPGN--HRDLLINLTLEAPGFVANFSRVAELVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + R +R + GY Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133 >gi|126667527|ref|ZP_01738497.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17] gi|126627953|gb|EAZ98580.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17] Length = 174 Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%) Query: 5 LFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 F+ + + L+ +++G RV + C + L++ LW + D F+PH Sbjct: 36 WFHILRQNTPAARNLHAAKLVNKAWQQGDRVGIVCDTLEHAQELDDLLWNFSPDAFIPH- 94 Query: 61 VDVGDEGDFSSFQPV-LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V E + PV +L + T+ L + D ++++ I +D Sbjct: 95 -SVISEANTPCKDPVGILLHPPAAEDWDTVIILC---TELPAHADQFKRLALIAQ-NDPV 149 Query: 120 SLEWGRAHWRSLKNSGYAPDV 140 L+ R+H++ L+ G V Sbjct: 150 VLDQARSHFKQLRALGIEARV 170 >gi|152989277|ref|YP_001346666.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PA7] gi|218889884|ref|YP_002438748.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa LESB58] gi|150964435|gb|ABR86460.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa PA7] gi|218770107|emb|CAW25869.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa LESB58] Length = 142 Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + +G RV + C E R L+ LW+++ + F Sbjct: 1 MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + + PV L + + L++ G V + +V ++ + Sbjct: 61 IPHSL-----AEEDAEAPVALGLGE--PPGNHRDLLINLTLEAPGFVPNFSRVAELVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + R +R + GY Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133 >gi|152980235|ref|YP_001352359.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille] gi|151280312|gb|ABR88722.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille] Length = 141 Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L + ++ + L+E LWT+ + FLPH Sbjct: 1 MTRIDFHSNVPDKISYACRLARKARNANFQIVILAQDRAQLAQLDEKLWTFSEQDFLPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + ++ P+LLT S + + L++ + +E++ +I+T+D Sbjct: 60 --VMLDDALAAQTPILLTADSAME-SPHTQILINLSDTSPTHFARFERMFEVISTEDADK 116 Query: 121 LEWGRAHWRSLKNSGYA 137 GR + K GY Sbjct: 117 -SAGRDRYSFYKQRGYP 132 >gi|296108277|ref|YP_003619978.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99 Alcoy] gi|295650179|gb|ADG26026.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99 Alcoy] Length = 144 Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 4 LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY + L++ Y KG + V C +++ + L+E LWT+K D F+PH Sbjct: 6 VDFYLLASSLPESRWLVACRLIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + Q I L++ ++ +++V+ ++ ++ + Sbjct: 66 NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119 Query: 120 SLEWGRAHWRSLKNSGYA 137 E R H++ +N G A Sbjct: 120 EKEVSRLHYKEYRNKGCA 137 >gi|53803850|ref|YP_114528.1| DNA polymerase III subunit chi [Methylococcus capsulatus str. Bath] gi|53757611|gb|AAU91902.1| putative DNA polymerase III, chi subunit [Methylococcus capsulatus str. Bath] Length = 152 Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 8/143 (5%) Query: 1 MRTLLFYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58 M + FY L + Y +G V + ++ L++ LWT+++ F+P Sbjct: 1 MTRVDFYLLPAGESLLSYACRLTEKAYRQGHTVFLVTDTDDEAAQLDDMLWTFRQGSFVP 60 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 H ++ P + + +++ S + +V+ ++ D Sbjct: 61 H----RAVTGHTAAGPCPVAVGREPPVGFD-DVMINLGSAVPEAFRRFRRVIELV-GPDD 114 Query: 119 GSLEWGRAHWRSLKNSGYAPDVI 141 + R H+R ++ G P ++ Sbjct: 115 AARALKREHFRHYRSEGLNPAMV 137 >gi|167580139|ref|ZP_02373013.1| DNA polymerase III subunit chi [Burkholderia thailandensis TXDOH] Length = 138 Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V C +L+E+LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDEHLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P++LT A L++ + +E+++ ++ + Sbjct: 59 --CAVDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|89900901|ref|YP_523372.1| DNA polymerase III subunit chi [Rhodoferax ferrireducens T118] gi|89345638|gb|ABD69841.1| DNA polymerase III chi subunit, HolC [Rhodoferax ferrireducens T118] Length = 144 Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ G ++ V GS V L+ LWT+ F+PH Sbjct: 1 MTEVAFHFNAPDRVAYACRLLRKAAASGAKLVV-IGSPDVLQQLDRALWTFSAVDFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + E + PV+L+ S+ + L++ + + +E+V+ ++ +D+ Sbjct: 59 CFLESESHVVAASPVILSTSTHAVPHQQV--LLNLGQLVPEGFERFERVIEVVGQEDED- 115 Query: 121 LEWGRAHWRSLKNSGY 136 + R+ W+S + GY Sbjct: 116 RQSARSRWKSYADRGY 131 >gi|294012537|ref|YP_003545997.1| DNA polymerase III chi subunit [Sphingobium japonicum UT26S] gi|292675867|dbj|BAI97385.1| DNA polymerase III chi subunit [Sphingobium japonicum UT26S] Length = 149 Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 14/142 (9%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY+ ++ E L + + G R+ V + ++ LW + FL HG Sbjct: 2 QVDFYQLSRDPVEQVLPAIAGRVLDMGARLLVVAREPERLERISAGLWAGPPESFLAHGR 61 Query: 62 DVGDEGDFSSFQPVLLT----ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 D S QPVLL + L AN + L D + + +E+ + D Sbjct: 62 A---GDDAESVQPVLLAQHCPAADLVANGARHVALADG--LWREEALGFERAFYFF---D 113 Query: 118 QGSLEWGRAHWRSL-KNSGYAP 138 +++ RA WR L K G P Sbjct: 114 AETIDGARASWRELAKREGVIP 135 >gi|163856080|ref|YP_001630378.1| DNA polymerase III, chi subunit [Bordetella petrii DSM 12804] gi|163259808|emb|CAP42109.1| DNA polymerase III, chi subunit [Bordetella petrii] Length = 147 Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F D + Y+ G+R+ V C + + LW + F+PH Sbjct: 3 MTRIDFAFGAADRLRAACQAARKRYQAGQRLVVYCADGARLAAFDRMLWAFDDVSFVPH- 61 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V ++ PV+LT ++ + +L++ D + +V+ I+ +DD Sbjct: 62 --VLATDPLAADTPVILTAAAPQPAAAGDEPWLLNLDDDCPPGYDGFARVLEIV-SDDPA 118 Query: 120 SLEWGRAHWRSLKNSGYAP 138 + R WR + +G+ P Sbjct: 119 DRQAARQRWRVYQAAGHTP 137 >gi|313497346|gb|ADR58712.1| HolC [Pseudomonas putida BIRD-1] Length = 142 Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY D L + + G RV + C R L++ LW +K + F Sbjct: 1 MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRIELDQRLWRFKGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH D + + V+L ++ L++ + G V +E+V I+ + Sbjct: 61 VPH-----DLAEVHADADVVLGLTDNA--GEHHGLLINLGASVPGFVGQFERVAEIVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + R +R + GYA Sbjct: 113 EPAIRQSARERFRFYREQGYA 133 >gi|26987715|ref|NP_743140.1| DNA polymerase III subunit chi [Pseudomonas putida KT2440] gi|148546260|ref|YP_001266362.1| DNA polymerase III subunit chi [Pseudomonas putida F1] gi|24982403|gb|AAN66604.1|AE016288_3 DNA polymerase III, chi subunit [Pseudomonas putida KT2440] gi|148510318|gb|ABQ77178.1| DNA polymerase III, chi subunit [Pseudomonas putida F1] Length = 142 Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY D L + + G RV + C R L++ LW +K + F Sbjct: 1 MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH D + + V+L ++ L++ + G V +E+V I+ + Sbjct: 61 VPH-----DLAEVHADADVVLGLADNA--GEHHGLLINLGASVPGFVGQFERVAEIVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + R +R + GYA Sbjct: 113 EPAIRQSARERFRFYREQGYA 133 >gi|295675787|ref|YP_003604311.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1002] gi|295435630|gb|ADG14800.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1002] Length = 138 Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L + Y G+ + V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLARKAYLAGQPLVVLA-EPARLRAFDEMLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ PV+L + + + L++ + +E+++ ++ + Sbjct: 59 --CMAGTPLAADTPVVLATNLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHEE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LAAGRERYRFYRDRGYA 130 >gi|52842838|ref|YP_096637.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629949|gb|AAU28690.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 144 Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 10/138 (7%) Query: 4 LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY + L++ Y KG + V C +++ + L+E LWT+K D F+PH Sbjct: 6 VDFYLLASSLPESRWLVACRLIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + Q I L++ ++ +++V+ ++ ++ + Sbjct: 66 NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119 Query: 120 SLEWGRAHWRSLKNSGYA 137 E R H++ ++ G Sbjct: 120 EKEVSRLHYKEYRHKGCE 137 >gi|209519260|ref|ZP_03268062.1| DNA polymerase III chi subunit HolC [Burkholderia sp. H160] gi|209500340|gb|EEA00394.1| DNA polymerase III chi subunit HolC [Burkholderia sp. H160] Length = 138 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L + Y G+ + V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLARKAYLAGQPLVVLA-EPARLRAFDEMLWTFAPLEFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 +S PV+L + + + L++ + +E+++ ++ + Q Sbjct: 59 --CMAGTPLASDTPVVLATNLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAQEE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LAAGRERYRFYRDRGYA 130 >gi|291614867|ref|YP_003525024.1| DNA polymerase III chi subunit HolC [Sideroxydans lithotrophicus ES-1] gi|291584979|gb|ADE12637.1| DNA polymerase III chi subunit HolC [Sideroxydans lithotrophicus ES-1] Length = 139 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY D L + G RV + E D L++ LW + F+PH Sbjct: 1 MTKVDFYTGSEDKLRTACQLSHKAMQNGLRVLLHAPDEATADKLDQLLWHYPPTAFMPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ PV++ ++ L+ + + +E+V+ I++ DD + Sbjct: 60 --CHSHEADAATLPVVIGRDEAFPHS---ELLISLHNACLPFFSRFERVIEIVSQDDADA 114 Query: 121 LEWGRAHWRSLKNSGYA 137 + GR + K+ GY Sbjct: 115 -KLGRERYVFYKDRGYE 130 >gi|134296644|ref|YP_001120379.1| DNA polymerase III subunit chi [Burkholderia vietnamiensis G4] gi|134139801|gb|ABO55544.1| DNA polymerase III chi subunit, HolC [Burkholderia vietnamiensis G4] Length = 138 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EAARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P+LLT A + L++ + +E+++ ++ + Sbjct: 59 --CSVDSPHAAATPILLTADLDQA--PHHQVLLNLGATVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|300310781|ref|YP_003774873.1| DNA polymerase III subunit chi [Herbaspirillum seropedicae SmR1] gi|300073566|gb|ADJ62965.1| DNA polymerase III (chi subunit) protein [Herbaspirillum seropedicae SmR1] Length = 139 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ + L++ G + V+ L++ LW++ + FLPH Sbjct: 1 MTRIDFHSNVPQKITYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + ++ ++LT S A + L++ + +E+++ II+ DD Sbjct: 60 --VMAKDPLAAQTAIILT-SDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADK 116 Query: 121 LEWGRAHWRSLKNSGYA 137 GR +R K GY Sbjct: 117 -AAGRDRYRFYKERGYP 132 >gi|114319718|ref|YP_741401.1| DNA polymerase III chi subunit, HolC [Alkalilimnicola ehrlichii MLHE-1] gi|114226112|gb|ABI55911.1| DNA polymerase III chi subunit, HolC [Alkalilimnicola ehrlichii MLHE-1] Length = 146 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%) Query: 4 LLFYRFKNDW-----EYNLLVLLQDEYEKGKR-VSVQCGSERVRDSLNEYLWTWKKDGFL 57 + FY E L+ E G R + +Q + L+ LWT++K+ F+ Sbjct: 9 VRFYVLNRATDPVQRERFACELVAKGLEHGVRHIHIQVHDPQQARRLDTLLWTFRKESFI 68 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PH V E + PV++ + L++ A+ + + +V ++ D Sbjct: 69 PHAVQAEAEDE-----PVVIGDRPEPRPDA---LLINLAADIPPEWTAFGRVFEVVV-QD 119 Query: 118 QGSLEWGRAHWRSLKNSGYAPD 139 L R+H+R+ + +G P+ Sbjct: 120 PEILHTTRSHFRTYQQAGVTPE 141 >gi|170692020|ref|ZP_02883184.1| DNA polymerase III chi subunit HolC [Burkholderia graminis C4D1M] gi|170143304|gb|EDT11468.1| DNA polymerase III chi subunit HolC [Burkholderia graminis C4D1M] Length = 138 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L++ Y+ G+ V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLVRKAYQAGQPTIVVA-EPERLRAFDEQLWTFSALDFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ P++L + + + L++ + +E+++ ++ + Sbjct: 59 --CMAGTPLAAQTPIVLAANLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHDE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LIAGRERYRFYRDRGYA 130 >gi|66044341|ref|YP_234182.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. syringae B728a] gi|289623817|ref|ZP_06456771.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649168|ref|ZP_06480511.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aesculi str. 2250] gi|289678197|ref|ZP_06499087.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. syringae FF5] gi|298485817|ref|ZP_07003895.1| DNA polymerase III chi subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302188388|ref|ZP_07265061.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. syringae 642] gi|63255048|gb|AAY36144.1| DNA polymerase III chi subunit, HolC [Pseudomonas syringae pv. syringae B728a] gi|298159641|gb|EFI00684.1| DNA polymerase III chi subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867844|gb|EGH02553.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330899519|gb|EGH30938.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950948|gb|EGH51208.1| DNA polymerase III subunit chi [Pseudomonas syringae Cit 7] gi|330969236|gb|EGH69302.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975726|gb|EGH75792.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 142 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG + + V+L + + S + +D + + +V ++ + Sbjct: 61 LPHG-----DAESDHDAAVVLGLGDDSGEHSDLLVNLDLS--IPAFFKRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135 >gi|54298621|ref|YP_124990.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris] gi|53752406|emb|CAH13838.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris] Length = 144 Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 10/138 (7%) Query: 4 LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY + L++ Y KG + V C +++ + L+E LWT+K D F+PH Sbjct: 6 VDFYLLASSLPESRWLVACRLIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + Q I L++ ++ +++V+ ++ ++ + Sbjct: 66 NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119 Query: 120 SLEWGRAHWRSLKNSGYA 137 E R H++ + G A Sbjct: 120 EKEVSRLHYKEYRYKGCA 137 >gi|33593407|ref|NP_881051.1| hypothetical protein BP2422 [Bordetella pertussis Tohama I] gi|33597810|ref|NP_885453.1| hypothetical protein BPP3286 [Bordetella parapertussis 12822] gi|33602712|ref|NP_890272.1| hypothetical protein BB3737 [Bordetella bronchiseptica RB50] gi|33572763|emb|CAE42693.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|33574239|emb|CAE38571.1| conserved hypothetical protein [Bordetella parapertussis] gi|33577154|emb|CAE35711.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] gi|332382816|gb|AEE67663.1| hypothetical protein BPTD_2379 [Bordetella pertussis CS] Length = 151 Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 10/143 (6%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F D + ++ G+R+ V C + + LW + F+PH Sbjct: 1 MTRIDFAFGAPDRLRAACRTARKRFQAGQRLVVYCADGGRLAAFDRMLWALEDVSFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISS------LNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 V ++ PVLLT L + +L++ + D YE+++ I+ Sbjct: 60 --VLANDALAADTPVLLTAGDPAAALALATTGDSRPWLLNLDDGCPPNFDGYERLLEIV- 116 Query: 115 TDDQGSLEWGRAHWRSLKNSGYA 137 +DD + R WR +N+G+A Sbjct: 117 SDDPADRQAARQRWRDYQNAGHA 139 >gi|187477635|ref|YP_785659.1| DNA polymerase III subunit chi [Bordetella avium 197N] gi|115422221|emb|CAJ48745.1| DNA polymerase III, chi subunit [Bordetella avium 197N] Length = 145 Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F D + Y G+R+ V C + + LW + F+PH Sbjct: 1 MTRIDFAFGAADRLRAACQTARKRYLAGQRLIVYCSDANRLSAFDRLLWAFDDISFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRF----LVDEASMHIGDVDYYEKVVFIINTD 116 V ++ P++LT + N + L++ D + +V+ I++ + Sbjct: 60 --VLARDALAAHTPIVLTAT--NPQQAAALAPDAWLLNLDDACPPHYDDFPRVLEIVSGN 115 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 D R WR +G+ P Sbjct: 116 DTD-RAAARVRWRDYVAAGHTP 136 >gi|153877788|ref|ZP_02004368.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS] gi|152065748|gb|EDN65632.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS] Length = 143 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 10/140 (7%) Query: 1 MRTLLFY--RFKNDWEYNL--LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY +N + + L + +G R+ +Q S L+ +LW +K++ F Sbjct: 1 MPQIDFYILHTQNRYAKDRFTCQLTDKAWHQGYRIYIQTTSLAQAQQLDNFLWVFKEESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH + S P+ + S+ + L++ + ++++ I+N D Sbjct: 61 LPHDIYPEMS---ESLAPIRIGYSAQVCEGMDV--LINLTETVPPFFESFQRIAEIVN-D 114 Query: 117 DQGSLEWGRAHWRSLKNSGY 136 + + GR +R ++ Y Sbjct: 115 TPYAKQAGRTRYRFYRDKAY 134 >gi|308050964|ref|YP_003914530.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799] gi|307633154|gb|ADN77456.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799] Length = 153 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY Y KG+RV V C S+ ++L+E LW ++ Sbjct: 1 MANATFYLLPGGSDSARVTRPADIACQAAARAYRKGQRVFVHCASQADAEALDEQLWQFE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR-FLVDEASMHIGDVDYYEKVVF 111 D F+PH + + PV + + NA R L++ A + ++ Sbjct: 61 PDSFIPHNLVGEGPQGGA---PVEIGWAMPNAALPVNRALLINLAPEVPKFAVQFAHIID 117 Query: 112 IINTDDQGSLEWGRAHWRSLKNSG 135 + D+ + R + + G Sbjct: 118 FVPA-DEQAKAQARKRFAHYRQLG 140 >gi|77919148|ref|YP_356963.1| DNA polymerase III subunit chi [Pelobacter carbinolicus DSM 2380] gi|77545231|gb|ABA88793.1| DNA polymerase III, chi subunit [Pelobacter carbinolicus DSM 2380] Length = 138 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 7/139 (5%) Query: 1 MRTLLFYRFKNDWEY-NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F + K + +L L + + +G+RV V + +L+ ++WTWKK F+PH Sbjct: 1 MTRVEFVKIKRPEKAKHLCELAEHFFTQGQRVLVMVCDDNQGVTLDRFMWTWKKGAFIPH 60 Query: 60 GVDVGDEGDFSS-FQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 V D G +PV++ + N N + + + + + ++ V+ + Sbjct: 61 ---VYDNGAVDCLDEPVIIEVEERNPNNAGVLIM--GKPCSLDFIRQFDLVIDFAELYEP 115 Query: 119 GSLEWGRAHWRSLKNSGYA 137 R + + +G+ Sbjct: 116 QLKVAARKRYAHFRETGFE 134 >gi|330504707|ref|YP_004381576.1| DNA polymerase III subunit chi [Pseudomonas mendocina NK-01] gi|328918993|gb|AEB59824.1| DNA polymerase III, chi subunit [Pseudomonas mendocina NK-01] Length = 139 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 12/145 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY ++ L + G V V+ E LNE LWT+K + F Sbjct: 1 MPRIEFYVLSSNDAIGRLRAACQLALKAWSAGLPVFVRGSDEAQCAELNELLWTFKAERF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH D + PV+L I A ++ L++ S V+ + +++ I+N Sbjct: 61 VPH-----DLHQDAPLSPVVLGIDE--APSADQGVLINLGSSLSPHVERFSRIIEIVN-Q 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPDVI 141 L R ++R+ + GY P + Sbjct: 113 QPELLSACRENFRTYRQRGYDPQRV 137 >gi|323525106|ref|YP_004227259.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1001] gi|323382108|gb|ADX54199.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1001] Length = 138 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L + Y+ G+ V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLARKAYQAGQPTIVVA-EPERLQAFDEQLWTFSALDFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ P++L + + + L++ + +E+++ ++ + Sbjct: 59 --CMAGTPLAAHTPIVLAANLD--DVPHHQVLLNLGASVPAQFARFERLLEVV-GNAHDE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LIAGRERYRFYRDRGYA 130 >gi|49076858|gb|AAT49608.1| PA3832 [synthetic construct] Length = 143 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + +G +V + C E R L+ LW+++ + F Sbjct: 1 MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + + PV L + + L++ G V + +V ++ + Sbjct: 61 IPHSL-----AEEDAEAPVALGLGE--PPGNHRDLLINLTLEAPGFVPNFSRVAELVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + R +R + GY Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133 >gi|83721052|ref|YP_441380.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264] gi|167618245|ref|ZP_02386876.1| DNA polymerase III subunit chi [Burkholderia thailandensis Bt4] gi|257139947|ref|ZP_05588209.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264] gi|83654877|gb|ABC38940.1| DNA polymerase III, chi subunit, putative [Burkholderia thailandensis E264] Length = 138 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P++LT A L++ + +E+++ ++ + Sbjct: 59 --CAVDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|71908696|ref|YP_286283.1| DNA polymerase III chi subunit, HolC [Dechloromonas aromatica RCB] gi|71848317|gb|AAZ47813.1| DNA polymerase III chi subunit, HolC [Dechloromonas aromatica RCB] Length = 140 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY +D LL Y K K + V V ++ LWT F+PH Sbjct: 1 MTEVFFYHGASDKIAAACALLSGAYAKKKPMLVYTLEPEVASGIDRMLWTNAALSFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P+L+ + + + + ++ ++ D+ Sbjct: 60 --CRADSPLAAETPILIADTLETIPQDERLM--NLSQEIPPGFSRFHSLIEVV-GQDESD 114 Query: 121 LEWGRAHWRSLKNSGYA 137 R + K+ GY Sbjct: 115 RLAARDRVKFYKDRGYE 131 >gi|53725609|ref|YP_102448.1| DNA polymerase III subunit chi [Burkholderia mallei ATCC 23344] gi|67640817|ref|ZP_00439611.1| DNA polymerase III, chi subunit [Burkholderia mallei GB8 horse 4] gi|121599148|ref|YP_993647.1| DNA polymerase III subunit chi [Burkholderia mallei SAVP1] gi|124386421|ref|YP_001028892.1| DNA polymerase III subunit chi [Burkholderia mallei NCTC 10229] gi|126450095|ref|YP_001081196.1| DNA polymerase III subunit chi [Burkholderia mallei NCTC 10247] gi|167003641|ref|ZP_02269427.1| DNA polymerase III, chi subunit [Burkholderia mallei PRL-20] gi|254178378|ref|ZP_04885033.1| DNA polymerase III, chi subunit [Burkholderia mallei ATCC 10399] gi|254199350|ref|ZP_04905716.1| DNA polymerase III, chi subunit [Burkholderia mallei FMH] gi|254205666|ref|ZP_04912018.1| DNA polymerase III, chi subunit [Burkholderia mallei JHU] gi|254357824|ref|ZP_04974097.1| DNA polymerase III, chi subunit [Burkholderia mallei 2002721280] gi|52429032|gb|AAU49625.1| DNA polymerase III, chi subunit, putative [Burkholderia mallei ATCC 23344] gi|121227958|gb|ABM50476.1| putative DNA polymerase III, chi subunit [Burkholderia mallei SAVP1] gi|124294441|gb|ABN03710.1| putative DNA polymerase III, chi subunit [Burkholderia mallei NCTC 10229] gi|126242965|gb|ABO06058.1| DNA polymerase III, chi subunit [Burkholderia mallei NCTC 10247] gi|147748946|gb|EDK56020.1| DNA polymerase III, chi subunit [Burkholderia mallei FMH] gi|147753109|gb|EDK60174.1| DNA polymerase III, chi subunit [Burkholderia mallei JHU] gi|148026951|gb|EDK84972.1| DNA polymerase III, chi subunit [Burkholderia mallei 2002721280] gi|160699417|gb|EDP89387.1| DNA polymerase III, chi subunit [Burkholderia mallei ATCC 10399] gi|238521612|gb|EEP85062.1| DNA polymerase III, chi subunit [Burkholderia mallei GB8 horse 4] gi|243060867|gb|EES43053.1| DNA polymerase III, chi subunit [Burkholderia mallei PRL-20] Length = 138 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P++LT A L++ + +E+++ ++ + Sbjct: 59 --CAIDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNPPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|15599027|ref|NP_252521.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAO1] gi|107103352|ref|ZP_01367270.1| hypothetical protein PaerPA_01004421 [Pseudomonas aeruginosa PACS2] gi|254236736|ref|ZP_04930059.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719] gi|296387651|ref|ZP_06877126.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAb1] gi|12230135|sp|O68823|HOLC_PSEAE RecName: Full=DNA polymerase III subunit chi gi|9950007|gb|AAG07219.1|AE004800_8 DNA polymerase III, chi subunit [Pseudomonas aeruginosa PAO1] gi|2984772|gb|AAD04822.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa] gi|126168667|gb|EAZ54178.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719] Length = 142 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + +G +V + C E R L+ LW+++ + F Sbjct: 1 MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + + PV L + + L++ G V + +V ++ + Sbjct: 61 IPHSL-----AEEDAEAPVALGLGE--PPGNHRDLLINLTLEAPGFVPNFSRVAELVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + + R +R + GY Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133 >gi|53718608|ref|YP_107594.1| DNA polymerase III subunit chi [Burkholderia pseudomallei K96243] gi|76810735|ref|YP_332588.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1710b] gi|126440549|ref|YP_001058066.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 668] gi|126454054|ref|YP_001065303.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1106a] gi|134281095|ref|ZP_01767804.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305] gi|167718525|ref|ZP_02401761.1| DNA polymerase III subunit chi [Burkholderia pseudomallei DM98] gi|167737557|ref|ZP_02410331.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 14] gi|167814691|ref|ZP_02446371.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 91] gi|167823145|ref|ZP_02454616.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 9] gi|167844709|ref|ZP_02470217.1| DNA polymerase III subunit chi [Burkholderia pseudomallei B7210] gi|167893244|ref|ZP_02480646.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 7894] gi|167901701|ref|ZP_02488906.1| DNA polymerase III subunit chi [Burkholderia pseudomallei NCTC 13177] gi|167909940|ref|ZP_02497031.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 112] gi|167917977|ref|ZP_02505068.1| DNA polymerase III subunit chi [Burkholderia pseudomallei BCC215] gi|217419436|ref|ZP_03450942.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576] gi|226194392|ref|ZP_03789990.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pakistan 9] gi|237811283|ref|YP_002895734.1| DNA polymerase III subunit chi [Burkholderia pseudomallei MSHR346] gi|242315240|ref|ZP_04814256.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b] gi|254181438|ref|ZP_04888035.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655] gi|254190837|ref|ZP_04897344.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pasteur 52237] gi|254196190|ref|ZP_04902614.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13] gi|254261707|ref|ZP_04952761.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a] gi|52209022|emb|CAH34962.1| putative DNA polymerase III chi subunit [Burkholderia pseudomallei K96243] gi|76580188|gb|ABA49663.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710b] gi|126220042|gb|ABN83548.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 668] gi|126227696|gb|ABN91236.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106a] gi|134247401|gb|EBA47486.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305] gi|157938512|gb|EDO94182.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pasteur 52237] gi|169652933|gb|EDS85626.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13] gi|184211976|gb|EDU09019.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655] gi|217396740|gb|EEC36756.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576] gi|225933477|gb|EEH29466.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pakistan 9] gi|237504050|gb|ACQ96368.1| DNA polymerase III subunit chi [Burkholderia pseudomallei MSHR346] gi|242138479|gb|EES24881.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b] gi|254220396|gb|EET09780.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a] Length = 138 Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P++LT A L++ + +E+++ ++ + Sbjct: 59 --CAIDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|254786692|ref|YP_003074121.1| DNA polymerase III subunit chi [Teredinibacter turnerae T7901] gi|237684898|gb|ACR12162.1| DNA polymerase III subunit chi [Teredinibacter turnerae T7901] Length = 140 Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFK----NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY +D L + +G +V + L+E LW ++ + F Sbjct: 1 MTRVTFYVLAQGAVSDRHQFACRLTEKAVNQGSKVMIATNDASETKVLDELLWQFRAESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH PVLL+ + L++ G + ++V I+ Sbjct: 61 VPHHTYGDTLES-----PVLLSHDGDDI--QQHDLLINLRRNIPGAFSRFARLVEIV-IQ 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D + R H+ K GY + Sbjct: 113 DPADKQLSRKHFTYFKERGYEIE 135 >gi|88810476|ref|ZP_01125733.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231] gi|88792106|gb|EAR23216.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231] Length = 144 Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 13/139 (9%) Query: 4 LLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY L + Y +G RV + G + + +L+ LWT++ F+PH Sbjct: 7 IDFYVLTTVAAAARELFCCRLTEKAYRQGYRVFILTGDKALTQALDLQLWTFRAGSFVPH 66 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + + PV+L + L++ A+ ++ I+ T Sbjct: 67 ATLGQADDE-----PVVLG---EQPPRLAVDLLINLAAHCPNHWQRLSRIAEIV-TQQPE 117 Query: 120 SLEWGRAHWRSLKNSGYAP 138 SLE R +R +N G P Sbjct: 118 SLELARERFRCYRNDGAQP 136 >gi|254428118|ref|ZP_05041825.1| DNA polymerase III, chi subunit superfamily [Alcanivorax sp. DG881] gi|196194287|gb|EDX89246.1| DNA polymerase III, chi subunit superfamily [Alcanivorax sp. DG881] Length = 139 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 13/141 (9%) Query: 1 MRTLLFY---RFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + + L + ++G++V V C +E ++ W GF Sbjct: 1 MTEVTFYLSSKVGDGVRQALAWRIADKALKQGRQVYVHCQNEAHARQVDAQFWQSPATGF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPH + + PVLL L++ +++V +I+ Sbjct: 61 LPHALGGEGQA------PVLLGFGDD--PGHHHDVLINLTDQVPDFSSRFQRVAEMISGA 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D + GR +R ++ G+ Sbjct: 113 D-TERQQGRERFRFYRDRGFP 132 >gi|167835787|ref|ZP_02462670.1| DNA polymerase III subunit chi [Burkholderia thailandensis MSMB43] Length = 138 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G R V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAG-RPVVVCAEPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P++LT A L++ + +E+++ ++ + Sbjct: 59 --CAVDNAHAAGTPIVLTADLDRA--PHHGILLNLGAQVPAQFARFERLLEVV-GNTPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|70728447|ref|YP_258196.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf-5] gi|68342746|gb|AAY90352.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens Pf-5] Length = 142 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + G R+ + C RD L+ LW +K + F Sbjct: 1 MTKVDFYILPSADPAARLDFACKLTDKAWRMGHRIYLHCSDAEQRDELDARLWRFKGETF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PHG + ++L + LV+ + ++ ++ + Sbjct: 61 VPHGPAESEPEGL-----IVLGLGQD--PGPHNDLLVNLDLKVPAFAPRFARIAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D + R +R + GY Sbjct: 113 DPAIRQAARESFRFYREQGYP 133 >gi|146283388|ref|YP_001173541.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501] gi|145571593|gb|ABP80699.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501] gi|327481781|gb|AEA85091.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri DSM 4166] Length = 139 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 12/145 (8%) Query: 1 MRTLLFYRF--KNDW--EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY N L ++ G +V V+C E L+E LW+++ + F Sbjct: 1 MTRIEFYVLPDDNPLGRLRAACQLAAKGWQHGLQVFVRCSDEDQSTRLDELLWSFRAERF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH ++ PV++ + + L++ A +D + +V+ I+N Sbjct: 61 IPH-----EQYAEEVQAPVVIGLEQEPPTAQGL--LINLAPTLSAHIDRFSRVIEIVN-Q 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPDVI 141 + L R ++R + GY P + Sbjct: 113 EPQLLTACRENFRLYRRQGYDPQRV 137 >gi|167032000|ref|YP_001667231.1| DNA polymerase III subunit chi [Pseudomonas putida GB-1] gi|166858488|gb|ABY96895.1| DNA-directed DNA polymerase [Pseudomonas putida GB-1] Length = 142 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY D L + + G RV + C R L++ LW +K + F Sbjct: 1 MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDTEQRSELDQRLWRFKGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH D + + V L ++ L++ + G V +E+V I+ + Sbjct: 61 VPH-----DLAEVHADADVALGLADNA--GEHRDLLINLGASVPGFVGQFERVAEIVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + G + R +R + GYA Sbjct: 113 EPGIRQSARERFRFYREQGYA 133 >gi|330811516|ref|YP_004355978.1| DNA polymerase III, chi subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379624|gb|AEA70974.1| Putative DNA polymerase III, chi subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 142 Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L++ + G R+ + C R+ L+ LW +K + F Sbjct: 1 MTKVDFYILPSADPSARLDFACKLVEKAWRMGHRIYLHCSDAAQREDLDARLWAFKGESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PHG + ++L + LV+ + +V ++ + Sbjct: 61 VPHGPAESEPEGL-----IVLGLGDDC--GQHQDLLVNLDLKVPAFAQRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D + R +R + GY Sbjct: 113 DPAIRQAARESFRFYREQGYP 133 >gi|104783413|ref|YP_609911.1| DNA polymerase III subunit chi [Pseudomonas entomophila L48] gi|95112400|emb|CAK17127.1| DNA polymerase III, chi subunit [Pseudomonas entomophila L48] Length = 142 Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY D L + + G RV + C E R L+E LW +K + F Sbjct: 1 MSQVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDEAQRLDLDERLWRFKGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + V L + + L++ G V +E+V I+ + Sbjct: 61 IPHNHAETHQDAS-----VALGLGNDA--GEHRDLLINLGGDVPGFVGQFERVAEIVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + R +R + GYA Sbjct: 113 EPTIRLAARERFRFYREQGYA 133 >gi|149186117|ref|ZP_01864431.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21] gi|148830148|gb|EDL48585.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21] Length = 146 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 4 LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY+ N + + L + + G+R+ V ER+R+ +++ LW FL +G Sbjct: 3 VDFYQLSNDPVDVTVAKLARKVLQAGERLVVVAADERLREHISKTLWEQGGGSFLANG-- 60 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 +G ++ QP+L+ + N + + L D D +++ + + D + E Sbjct: 61 -PADGPHAARQPILIAETCAAPNEARMAILADG--QWREDASGFDRTMLLF---DAEATE 114 Query: 123 WGRAHWRSLKNS 134 R WR L Sbjct: 115 AARGLWRELAAR 126 >gi|307728898|ref|YP_003906122.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1003] gi|307583433|gb|ADN56831.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1003] Length = 138 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 7/137 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L + Y+ G+ V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLARKAYQAGQPTIVVA-EPERLRAFDEQLWTFSALDFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ P++L + + L++ + +E+++ ++ + Sbjct: 59 --CMAGTPLAAQTPIVLATNLDEV--PHHQVLLNLGASVPAQFARFERLLEVV-GNAHDE 113 Query: 121 LEWGRAHWRSLKNSGYA 137 L GR +R ++ GYA Sbjct: 114 LIAGRERYRFYRDRGYA 130 >gi|229588595|ref|YP_002870714.1| DNA polymerase III subunit chi [Pseudomonas fluorescens SBW25] gi|229360461|emb|CAY47318.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens SBW25] Length = 142 Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G R+ + C RD L+ LW +K + F Sbjct: 1 MTQVDFYILPSADPLARLDFACKLTEKAWRMGHRIYLHCSDAAQRDELDARLWRFKGESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PHG + V+L + LV+ + +V ++ + Sbjct: 61 VPHGPAESEPEGL-----VVLGLGDSC--GDHHDLLVNLDLKVPPFAKAFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D + R +R + GY Sbjct: 113 DPAIRQAARESFRFYREQGYP 133 >gi|293604025|ref|ZP_06686438.1| DNA-directed DNA polymerase III chi subunit [Achromobacter piechaudii ATCC 43553] gi|292817629|gb|EFF76697.1| DNA-directed DNA polymerase III chi subunit [Achromobacter piechaudii ATCC 43553] Length = 156 Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 14/149 (9%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F D +++ + G+R+ V C + + LW + F+PH Sbjct: 1 MTRIDFAFGAPDRLRTACQVVRKRFLAGQRLVVYCKDGSRLAAFDRMLWAFDDTAFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLT----------ISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 V + PV+LT + +L++ + + +E+++ Sbjct: 60 --VLANDPLAPETPVVLTAGDPQQAAQAAQPDAGPDAPPLWLLNLDNDCPPGFETFERLL 117 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 I+ +DD + R WR N+G+ P Sbjct: 118 EIV-SDDPDDKQAARQRWRVYLNAGHTPQ 145 >gi|114562095|ref|YP_749608.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina NCIMB 400] gi|114333388|gb|ABI70770.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina NCIMB 400] Length = 149 Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 14/147 (9%) Query: 1 MRTLLFY-----RFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 M LFY + L L + +Y + K V + C ++ +++E LW + Sbjct: 1 MTQALFYLMPDNHNQMSALDALYLAACRLAEQQYRQQKTVYIHCKDKQQAYAIDELLWQF 60 Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 + + F+PH + EG + PV + +L N S + L++ A ++ Sbjct: 61 EPNAFVPHNLKG--EGPVTGA-PVEIGFDTLGPNKSR-QVLINLADQMPSFAVNLPHIID 116 Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAP 138 +D R +R +N G P Sbjct: 117 -FVANDDELKRIARNRYRQYQNVGITP 142 >gi|192361958|ref|YP_001981936.1| DNA polymerase III subunit chi [Cellvibrio japonicus Ueda107] gi|190688123|gb|ACE85801.1| DNA polymerase III, chi subunit [Cellvibrio japonicus Ueda107] Length = 139 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY L++ G + V + +E LWT+K + F Sbjct: 1 MTQVDFYVLPETTSEARWLFACRLIEKVQRMGMDILVAVDNPEQAREFDELLWTFKPESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + PV +T + + N + L++ +S D + ++ I+ Sbjct: 61 IPHQLLDIQQPA-----PVQITYNQESGNHQGL--LLNLSSGIPPYFDRFARLSEIV-IQ 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 ++ +L+ R + K GY + Sbjct: 113 EEKALKTSRERFSFYKGRGYPIE 135 >gi|167561906|ref|ZP_02354822.1| DNA polymerase III subunit chi [Burkholderia oklahomensis EO147] Length = 138 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P++LT A + L++ + +++++ ++ + Sbjct: 59 --CAIDNAHAANTPIVLTADLERA--PHHQILLNLGADVPTQFARFDRLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|325278211|ref|ZP_08143704.1| DNA polymerase III subunit chi [Pseudomonas sp. TJI-51] gi|324096651|gb|EGB95004.1| DNA polymerase III subunit chi [Pseudomonas sp. TJI-51] Length = 142 Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY D L + + G RV + C RD L+ LW +K + F Sbjct: 1 MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRDELDLRLWRFKGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH D + + V L ++ L++ + G V +E+V I+ + Sbjct: 61 VPH-----DLAEVHADAGVALGLAEHA--GDHHDLLINLGASVPGFVGQFERVAEIVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + R +R + GYA Sbjct: 113 APDIRQSARERFRFYREQGYA 133 >gi|56479506|ref|YP_161095.1| DNA polymerase III, chi subunit [Aromatoleum aromaticum EbN1] gi|56315549|emb|CAI10194.1| DNA polymerase III, chi subunit [Aromatoleum aromaticum EbN1] Length = 145 Score = 87.1 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY + L Y G+RV+V+ L++ LW+++ F+PH Sbjct: 1 MARVQFYHNAENPLALACELAARAYASGRRVAVRVPGPAAARELDQLLWSFEPLLFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + ++ PV++ ++ L + A D + + +++ I + Sbjct: 60 --VMADAPLAARTPVVIGDAARTTRWPHAELLFNLADDIPPDFERF-RMLVEIVGQSEAM 116 Query: 121 LEWGRAHWRSLKNS 134 RA W K Sbjct: 117 KIPARARWAHYKQR 130 >gi|254495992|ref|ZP_05108898.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12] gi|254354780|gb|EET13409.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12] Length = 118 Score = 87.1 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y +G RV V C ++ + L+E LWT+K+D F+PH + I Sbjct: 2 EKAYARGHRVYVFCNHQQDAELLDELLWTFKEDSFIPHNLQGEGPEPPPPI-----QIGY 56 Query: 82 LNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 N L++ + +++V+ ++ + + E RA++R + G Sbjct: 57 GNEPRGFNDILLNLTNHIPPFYAKFKRVMELV-ANIEAEKEQSRANYREYRAKGCE 111 >gi|329909140|ref|ZP_08275004.1| DNA polymerase III subunit chi [Oxalobacteraceae bacterium IMCC9480] gi|327546547|gb|EGF31526.1| DNA polymerase III subunit chi [Oxalobacteraceae bacterium IMCC9480] Length = 141 Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L++ R+ V G + +L+ LWT+ + F+PH Sbjct: 1 MTRVDFHSNIPDKISYVCRLVRKARHAHSRI-VLMGEPQQLAALDAALWTFSEHDFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V + PV+L + +A+ + L++ S +E++ I+ D Sbjct: 59 --VMAGDALAIHTPVILATTDADADALPHHQVLINLTSQPPPTFARFERLFEIV-ATDAA 115 Query: 120 SLEWGRAHWRSLKNSGYA 137 + GR +R + GYA Sbjct: 116 DIASGRDRYRFYQQRGYA 133 >gi|87198914|ref|YP_496171.1| DNA polymerase III chi subunit, HolC [Novosphingobium aromaticivorans DSM 12444] gi|87134595|gb|ABD25337.1| DNA polymerase III chi subunit, HolC [Novosphingobium aromaticivorans DSM 12444] Length = 143 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 11/129 (8%) Query: 4 LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY+ + E L ++ ++ G+R+ V E + E LWT + FL +G Sbjct: 3 VDFYQLTSDPAEQVLPLIARNTLAAGERLLVVSDDEAQLRRVGEALWTRLPETFLANGRA 62 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 QP+LL+ + AN + L D +E+V + ++ Sbjct: 63 GTA---HDERQPILLSDAPEPANGAKFMALADGVWRE----GAFERVFLLFP---PARID 112 Query: 123 WGRAHWRSL 131 R WR L Sbjct: 113 DARGCWRML 121 >gi|91788274|ref|YP_549226.1| DNA polymerase III subunit chi [Polaromonas sp. JS666] gi|91697499|gb|ABE44328.1| DNA polymerase III chi subunit, HolC [Polaromonas sp. JS666] Length = 145 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y G V V V L++ LW++ F+PH Sbjct: 1 MTEIAFHFNVPDKLAYGCRLLRKAYLSGASVVV-TAEADVLAQLDQSLWSFSPTEFVPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 D + PVLL + + + LV+ + +E+ + ++ D Sbjct: 59 CRSDAGEDNLAVTPVLL--AESLQDCARHEVLVNLGQGIPAGFERFERFIEVVAQGDDER 116 Query: 121 LEWGRAHWRSLKNSGYA 137 L R+ W+ + GY Sbjct: 117 L-AARSRWKHYTDRGYT 132 >gi|167569157|ref|ZP_02362031.1| DNA polymerase III subunit chi [Burkholderia oklahomensis C6786] Length = 138 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + S+ P++LT A + L++ + +++++ ++ + Sbjct: 59 --CAIDNAHSANTPIVLTADLERA--PHHQILLNLGADVPTQFARFDRLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|237799871|ref|ZP_04588332.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022726|gb|EGI02783.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae str. 1_6] Length = 142 Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C + R L+ LW +K + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSNAAQRTDLDARLWRFKGEVF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LPHG E D + V+L + + + L++ + + +V ++ + Sbjct: 61 LPHG---DAESDHDAA--VVLGLGDDS--GTHQDLLINLDLNIPAFFNRFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D R +RS + GY P Sbjct: 113 DPAIRLAARESFRSYRERGYPPQ 135 >gi|307294651|ref|ZP_07574493.1| DNA polymerase III chi subunit HolC [Sphingobium chlorophenolicum L-1] gi|306879125|gb|EFN10343.1| DNA polymerase III chi subunit HolC [Sphingobium chlorophenolicum L-1] Length = 145 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 10/138 (7%) Query: 3 TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + FY+ ++ E L + + G R+ V + ++ LW + FL HG Sbjct: 2 QVDFYQLSRDPVEQVLPAIAGRILDMGARLLVVAQEPERLERISAGLWAGPPESFLAHGR 61 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 S QPVLL AN + L D + + +E+ + D ++ Sbjct: 62 SGEG---AESMQPVLLAADCAAANGARHIALADG--LWREEALQFERAFYFF---DSETI 113 Query: 122 EWGRAHWRSL-KNSGYAP 138 E RA WR L K G P Sbjct: 114 EGARASWRDLSKREGVTP 131 >gi|312959166|ref|ZP_07773685.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6] gi|311286936|gb|EFQ65498.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6] Length = 142 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G R+ + C RD L+ LW +K + F Sbjct: 1 MTQVDFYILPSADPLARLDFACKLTEKAWRMGHRIYLHCSDATQRDELDARLWRFKGESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PHG + ++L + LV+ + +V ++ + Sbjct: 61 VPHGPAESEPEGL-----IVLGLGDHC--GDHHDLLVNLDLKVPPFAKAFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D + R +R + GY Sbjct: 113 DPAIRQAARESFRFYREQGYP 133 >gi|254481340|ref|ZP_05094585.1| DNA polymerase III, chi subunit superfamily [marine gamma proteobacterium HTCC2148] gi|214038503|gb|EEB79165.1| DNA polymerase III, chi subunit superfamily [marine gamma proteobacterium HTCC2148] Length = 139 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L Y +G + + + +LNE LW+++ F Sbjct: 1 MTRVGFYVVQAAAAGQRLEVAARLADKAYAQGHNIYINATDKPQAQALNELLWSFRPASF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + ++ + + + L++ + +V ++ T Sbjct: 61 MPHALAGEEQSEQ-----IAIGWGQD--PGKHSDLLINLQLEIPSFFSRFARVAEVV-TQ 112 Query: 117 DQGSLEWGRAHWRSLKNSGY 136 D+ SL R W K GY Sbjct: 113 DEDSLAALRKSWLFYKERGY 132 >gi|91794217|ref|YP_563868.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans OS217] gi|91716219|gb|ABE56145.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans OS217] Length = 153 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 18/151 (11%) Query: 1 MRTLLFYRFKND----------WEY---NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEY 47 M +FY + E L + Y + + + + C ++ +++E Sbjct: 1 MTQAIFYLMPDTPSPEHEPMPALEAVYLAACRLAERAYRQQQEIYIHCQDKQQAYAIDEL 60 Query: 48 LWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107 LW ++ F+PH + EG + PV + L N S L++ A Sbjct: 61 LWQFEPTAFVPHNLKG--EGPMTGA-PVEIGFDKLGPNKSRQL-LINLADQMPAFAVNLP 116 Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 ++ +D R+ +R +++G P Sbjct: 117 HIID-FVANDDELKRIARSRYRQYQSTGINP 146 >gi|107023403|ref|YP_621730.1| DNA polymerase III subunit chi [Burkholderia cenocepacia AU 1054] gi|116690485|ref|YP_836108.1| DNA polymerase III subunit chi [Burkholderia cenocepacia HI2424] gi|170733806|ref|YP_001765753.1| DNA polymerase III subunit chi [Burkholderia cenocepacia MC0-3] gi|254247473|ref|ZP_04940794.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia PC184] gi|105893592|gb|ABF76757.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia AU 1054] gi|116648574|gb|ABK09215.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia HI2424] gi|124872249|gb|EAY63965.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia PC184] gi|169817048|gb|ACA91631.1| DNA polymerase III chi subunit HolC [Burkholderia cenocepacia MC0-3] Length = 138 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSEHAAGTPIVLAADLDRAPHHHV--LLNLGATVPAQFARFERLLEVV-GNAPEE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|326386749|ref|ZP_08208370.1| DNA polymerase III chi subunit, HolC [Novosphingobium nitrogenifigens DSM 19370] gi|326208802|gb|EGD59598.1| DNA polymerase III chi subunit, HolC [Novosphingobium nitrogenifigens DSM 19370] Length = 144 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 4 LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + FY+ ++ E + ++ ++ G+R+ V E+ ++ LW D FL HG+ Sbjct: 3 VDFYQLTRDPAEQVVPLIARNTLGAGERLLVVSDDEQQLARISAGLWQKIPDSFLAHGLA 62 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 G + QP+LL + N + L D + + ++V + ++ Sbjct: 63 ---GGPHDARQPILLGKAPQGDNGARFLALADG---VWRESEGMQRVFLLFP---PERID 113 Query: 123 WGRAHWRSL 131 R WR L Sbjct: 114 DARRTWRLL 122 >gi|206561013|ref|YP_002231778.1| DNA polymerase III subunit chi [Burkholderia cenocepacia J2315] gi|198037055|emb|CAR52976.1| putative DNA polymerase III chi subunit [Burkholderia cenocepacia J2315] Length = 138 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSEHAAGTPIVLAADLDRAPHHHV--LLNLGATVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|85710394|ref|ZP_01041458.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1] gi|85687572|gb|EAQ27577.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1] Length = 138 Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Query: 4 LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + F++ ++ + + ++ Q + G+R+ V + + R++++ LW + + FL +G Sbjct: 3 VDFWQLSRDPVDKVVALIAQRVLDSGERLLVVSKNSQQREAISRTLWKAEPESFLANGEA 62 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 D QP+LL+ S AN ++ D + +E+ + D ++E Sbjct: 63 SAAGAD---RQPILLSASCEAANAASHVIFADG---EYREPTGFERAFLLF---DDETVE 113 Query: 123 WGRAHWRSLKN 133 R W+SL++ Sbjct: 114 AARGTWKSLES 124 >gi|330818017|ref|YP_004361722.1| DNA polymerase III subunit chi [Burkholderia gladioli BSR3] gi|327370410|gb|AEA61766.1| DNA polymerase III subunit chi [Burkholderia gladioli BSR3] Length = 138 Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y G+ V V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYLAGQAVVV-CAEPARLRTLDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + +S P++LT A + L++ + + +++ ++ + Sbjct: 59 --CSVDSPQASQTPIVLTTDLSRAPHDGV--LLNLGAEVPAQFARFARLLEVV-GNAPEE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|170697651|ref|ZP_02888739.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria IOP40-10] gi|170137399|gb|EDT05639.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria IOP40-10] Length = 138 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSAHAAGTPIVLAADLDQAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|170723399|ref|YP_001751087.1| DNA polymerase III subunit chi [Pseudomonas putida W619] gi|169761402|gb|ACA74718.1| DNA-directed DNA polymerase [Pseudomonas putida W619] Length = 142 Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY D L + + G RV + C R L++ LW +K + F Sbjct: 1 MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + V L ++ L++ + G V +E+V I+ Sbjct: 61 VPHDLAEAHADAT-----VALGLADNA--GEHRDLLINLGADVPGFVGQFERVAEIVVEQ 113 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 + R +R + GYA Sbjct: 114 -ADIRQSARERFRFYREQGYA 133 >gi|109899864|ref|YP_663119.1| DNA polymerase III chi subunit, HolC [Pseudoalteromonas atlantica T6c] gi|109702145|gb|ABG42065.1| DNA polymerase III, chi subunit [Pseudoalteromonas atlantica T6c] Length = 156 Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 15/150 (10%) Query: 1 MRTLLFYRFKNDWEYN---------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 M + FY + + E L + +R V C S+ + +E LW Sbjct: 1 MSKVTFYLLEQEAEATSQQPAHLALACQLAAQCFSNKQRCVVMCQSQAQAEQFDELLWQL 60 Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 D F+PH + + PV + + L++ A + ++ Sbjct: 61 PNDRFVPHNLTGEG---PQAGTPVEICWQ--RPSQFNKPVLINLADNMPDFHGKFSRIYD 115 Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + D + R ++ + +G+ D + Sbjct: 116 FVPAAD-ALKQQARERYKHYRAAGHQLDTL 144 >gi|115352565|ref|YP_774404.1| DNA polymerase III subunit chi [Burkholderia ambifaria AMMD] gi|115282553|gb|ABI88070.1| DNA polymerase III chi subunit, HolC [Burkholderia ambifaria AMMD] Length = 138 Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVVA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSAHAAGTPIVLAADLDQAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|146308543|ref|YP_001189008.1| DNA polymerase III, chi subunit [Pseudomonas mendocina ymp] gi|145576744|gb|ABP86276.1| DNA polymerase III, chi subunit [Pseudomonas mendocina ymp] Length = 139 Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + G V V+ E L+E LW +K + F Sbjct: 1 MPRIEFYVLSSSDAEGRLRAACQLALKAWGAGLPVFVRGSDEAQCIELDELLWRFKAERF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + PV+L + + ++ + L++ S V+ + +++ I+N Sbjct: 61 VPHDLHRD-----APQAPVVLGVDEVPSHEQGV--LINLGSSLSPHVERFSRIIEIVN-Q 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 L R ++R+ + GY P Sbjct: 113 QPELLSACRENFRNYRQRGYDP 134 >gi|238028368|ref|YP_002912599.1| DNA polymerase III subunit chi [Burkholderia glumae BGR1] gi|237877562|gb|ACR29895.1| DNA polymerase III subunit chi [Burkholderia glumae BGR1] Length = 138 Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y G+ V V C +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYLAGQSVVV-CAEPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + P++LT A + ++ + + +++ ++ + Sbjct: 59 --CSIDSPLAGQTPIVLTTDLSRAPHDGVV--LNLGAEVPAQFARFARLLEVV-GNAPEE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|171316726|ref|ZP_02905938.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria MEX-5] gi|171098076|gb|EDT42891.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria MEX-5] Length = 138 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSAHAAGTPIVLAADLDQAPHHHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|83644753|ref|YP_433188.1| DNA polymerase III subunit chi [Hahella chejuensis KCTC 2396] gi|83632796|gb|ABC28763.1| DNA polymerase III, chi subunit [Hahella chejuensis KCTC 2396] Length = 141 Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 13/141 (9%) Query: 1 MRTLLFYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M F+ + ++ L L + Y G R+ + C + + L++ L++++ + F Sbjct: 1 MPKADFHLLSSGDIAQRDFYLCRLCEKIYRLGHRIYILCKDSKELEHLDDLLYSFRPESF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH ++ SS PV L T + +++ D +V+ ++ Sbjct: 61 IPHSIEPE---PPSSDIPVFLCTRL--PETISTEVVINLTEAPPDKAD---RVIELVTG- 111 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D G+ R ++ K G+ Sbjct: 112 DPGARAKSRKVYKLYKQLGFE 132 >gi|332307894|ref|YP_004435745.1| DNA-directed DNA polymerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175223|gb|AEE24477.1| DNA-directed DNA polymerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 156 Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 15/150 (10%) Query: 1 MRTLLFYRFKNDWEYN---------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 M + FY + + E L + +R V C S+ + +E LW Sbjct: 1 MSKVTFYLLEQEAEATSQQPAHLALACQLAAQCFSNKQRCVVMCQSQAQAEQFDELLWQL 60 Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 D F+PH + + PV + + L++ A + ++ Sbjct: 61 PNDRFVPHNLTGEG---PQAGTPVEICWQ--RPSQFNKPVLINLADNMPDFHGKFSRIFD 115 Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + + + R ++ + +G+ D + Sbjct: 116 FVPAA-ETLKQQARERYKHYRAAGHQLDTL 144 >gi|172061424|ref|YP_001809076.1| DNA polymerase III subunit chi [Burkholderia ambifaria MC40-6] gi|171993941|gb|ACB64860.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria MC40-6] Length = 138 Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y+ G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPVRLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + ++ P++L A + L++ + +E+++ ++ + Sbjct: 59 --CGVDSAHAAGTPIVLAADLDQAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|225025636|ref|ZP_03714828.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC 23834] gi|224941586|gb|EEG22795.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC 23834] Length = 173 Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M T+ FY D E L + E G RV CG +L+ LW ++ + FLPH Sbjct: 27 MPTVTFYTHVADLETFACRLAKRAVEAGCRVLAWCGGTEQLATLDRQLWAFEAESFLPHE 86 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDE-ASMHIGDVDYYEKVVFIINTDDQG 119 + + E P+LL + +++ A + + E+V+ I+ + Sbjct: 87 IWLPKENPCPIEPPILLAEGEALPTAESSLVVLNLSADLWSHAPNTPERVLEIV-GRSET 145 Query: 120 SL 121 L Sbjct: 146 QL 147 >gi|90021018|ref|YP_526845.1| DNA polymerase III, chi subunit [Saccharophagus degradans 2-40] gi|89950618|gb|ABD80633.1| DNA polymerase III chi subunit, HolC [Saccharophagus degradans 2-40] Length = 149 Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 12/146 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + + L + +G +V + E +++E LWT + + F Sbjct: 1 MTRIDFYVLSASDDKSRWQFACRLAEKAVSRGNKVLIATQDEAASRAVDELLWTQRPESF 60 Query: 57 LPHG-----VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 +PH D ++ PV++T + LV+ + ++++ Sbjct: 61 VPHHIVGQNTDGQSSYAPTAKPPVVITHDLDD--IDHHDVLVNIRTTRPEQFSRFDRLAE 118 Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYA 137 I+ LE R + K GY Sbjct: 119 IV-IQQPEVLENTRQSYAFYKQRGYP 143 >gi|307824331|ref|ZP_07654557.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum SV96] gi|307734711|gb|EFO05562.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum SV96] Length = 160 Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 22/154 (14%) Query: 1 MRTLLFYRFKN-DWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + E L++ Y G V S ++++ LWT++ F Sbjct: 1 MAEVSFYILPSESLEERYLFACKLIEKAYRSGSFCYVLTDSAEQSRTIDDLLWTFRAGSF 60 Query: 57 LPHGVDVGDEGDFSSF---------------QPVLLTISSLNANTSTIRFLVDEASMHIG 101 +PH + G+ D + + +L+ + + F + +S + Sbjct: 61 IPHQIYTGEPPDIARDGVYAAGSPGASAATEKVILIGSLDAPEHWQKVLF--NLSSRYPD 118 Query: 102 DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 E+++ I++ + + + E GR +R + SG Sbjct: 119 VGPQTERILEILD-NSETTKEAGRNRYRRYQQSG 151 >gi|119476405|ref|ZP_01616756.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2143] gi|119450269|gb|EAW31504.1| DNA polymerase III subunit chi [marine gamma proteobacterium HTCC2143] Length = 145 Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 1 MRTLLFYRF--KNDWEYNL--LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + + +L L + ++ G + + +L+E LW+W+ F Sbjct: 1 MTKIDFYILPYDSSEQRHLFACRLAEKAFKLGNEIYIHGSDGDQAKALDELLWSWRNTSF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNA-NTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 +PH +D + QP+ + + L++ + +E+V I+ Sbjct: 61 IPHKIDDNSTDE----QPLHIGFGKDKQMSGDHNGLLINLSDHVPEFFSRFERVSEIVV- 115 Query: 116 DDQGSLEWGRAHWRSLKNSGY 136 D E RA++R KN GY Sbjct: 116 QDSAVTESTRANYRFYKNRGY 136 >gi|325982820|ref|YP_004295222.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212] gi|325532339|gb|ADZ27060.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212] Length = 159 Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 4/137 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M +LFY N+ L ++ RV + + ++ D L++ LWT+ F+PH Sbjct: 14 MTQILFYSGSNNKLQTTCRLCAKAIQQHMRVLIYVPASKLLDQLDQLLWTFSSTSFIPH- 72 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ D+ S PV+L+ + N+ L++ D +++++ I T + Sbjct: 73 CNILDDAKLVSATPVILS-GQIQVNSP-FDVLINLHDQSPHLFDQFDRLIEIAGTSHEDK 130 Query: 121 LEWGRAHWRSLKNSGYA 137 L R +R KN+GY Sbjct: 131 L-AARERYRFYKNAGYE 146 >gi|146329752|ref|YP_001209371.1| DNA polymerase III chi subunit [Dichelobacter nodosus VCS1703A] gi|146233222|gb|ABQ14200.1| DNA polymerase III chi subunit [Dichelobacter nodosus VCS1703A] Length = 141 Score = 83.6 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 9/140 (6%) Query: 6 FYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY + + L + + +V C E + LN LW+++ + F+PH + Sbjct: 5 FYVLNSQTIAARLHFVCRLCEKAMAARQHTAVLCADEAMAAQLNALLWSFRAESFIPHAL 64 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 ++ V+L I+ A T F+ A ++V +++ L Sbjct: 65 SDDALAAHAA---VMLLIAPERA-AQTNVFINLSADELPDIPQGCQRVFEVVD-QSPAVL 119 Query: 122 EWGRAHWRSLKNSGYAPDVI 141 R ++ + G P+ + Sbjct: 120 AVTRRRFKHYRARGITPETV 139 >gi|332284930|ref|YP_004416841.1| DNA polymerase III, chi subunit [Pusillimonas sp. T7-7] gi|330428883|gb|AEC20217.1| DNA polymerase III, chi subunit [Pusillimonas sp. T7-7] Length = 143 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 58/140 (41%), Gaps = 7/140 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F + +++ Y G+RV V + + + LW + F+PH Sbjct: 1 MSRVDFAFGAPNRLRTACEVVRKHYSAGRRVLVYTQDRQRLERFDHLLWGFDPTAFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNAN---TSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 V + ++ PV LT + A+ +L++ +++++++ I++ + Sbjct: 60 --VMTDDPLAAQTPVQLTAAPPVASPTADGQQPWLLNLDLSCPPGYEHFDRILEIVSDHE 117 Query: 118 QGSLEWGRAHWRSLKNSGYA 137 L R W+ K +G+A Sbjct: 118 DDKL-AARERWQQYKVAGHA 136 >gi|311281183|ref|YP_003943414.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1] gi|308750378|gb|ADO50130.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1] Length = 147 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + E + + + + GKRV V C E+ L+E LWT Sbjct: 1 MKNATFYLLDNDNTVDGLSTVEQLVCEIAAERWRAGKRVLVACEDEQQAIRLDEALWTRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+S L+ + + +V+ Sbjct: 61 PESFVPHNLAGEGPRGGA---PVELAWPQKR-NSSPRDVLISLRTGFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-HEDSLKQLARERYKAYRLAGFN 140 >gi|300690721|ref|YP_003751716.1| DNA polymerase III chi subunit [Ralstonia solanacearum PSI07] gi|299077781|emb|CBJ50419.1| DNA polymerase III chi subunit [Ralstonia solanacearum PSI07] Length = 142 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G+ ++ + LWT+ + FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G ++ P+LL ++ + + LV+ ++ + +++ I+ DD+ Sbjct: 59 --CGLRHPLAAQTPILLADAAEPLDDAPHHDILVNLSNATPPLFARFARLIEIV-GDDEA 115 Query: 120 SLEWG 124 Sbjct: 116 DRAAA 120 >gi|294341184|emb|CAZ89585.1| putative DNA polymerase III chi subunit, HolC [Thiomonas sp. 3As] Length = 151 Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 LL+ ++G RV V + L+ LWT++ F+PH V + + PV+L Sbjct: 29 CGLLRTATQRGARVLVAAPEP-LLTELDPLLWTFQPGSFVPH---VWQDDPLADKTPVIL 84 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + LV+ + + E+V+ +++ + R R+ + +G+ Sbjct: 85 APQPDLPRAGRVTALVNLGPDLVTGWESLERVIELVSENGPDK-PAARERLRAYRAAGFD 143 Query: 138 PDVI 141 P +I Sbjct: 144 PTII 147 >gi|296282387|ref|ZP_06860385.1| DNA polymerase III chi subunit [Citromicrobium bathyomarinum JL354] Length = 148 Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 12/134 (8%) Query: 4 LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 + F+ ++ E + ++ + G R V G R+S++ LW + + FL +G Sbjct: 3 VDFWLLSRDPAERVVAMIAERVLADGGRALVVSGDAAQRESVSRTLWEARPEAFLANG-- 60 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDE---ASMHIGDVDYYEKVVFIINTDDQG 119 G + QP+L+ + ++ N +T L D A G+ +E+V + D Sbjct: 61 -QAGGAHDADQPILIGEACVSTNAATACILADGHWRAEALAGE--TFERVFLLF---DDE 114 Query: 120 SLEWGRAHWRSLKN 133 + R WR + Sbjct: 115 QRDAARTAWREVSA 128 >gi|163750101|ref|ZP_02157344.1| DNA polymerase III, chi subunit [Shewanella benthica KT99] gi|161330158|gb|EDQ01140.1| DNA polymerase III, chi subunit [Shewanella benthica KT99] Length = 154 Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 15/145 (10%) Query: 1 MRTLLFYRF----KNDWEYNL------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 M LFY + E L L QD Y + V V +++E LW Sbjct: 1 MPNALFYVMPDEANSPTEATLQVHRLACELAQDAYVNQQLVYVHTQDREQAYAVDELLWQ 60 Query: 51 WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 ++ + F+PH + EG + PV + SL N + L++ A + +++ Sbjct: 61 FEPNSFVPHNLKG--EGPLTGA-PVEIGFDSLGPNKNRHL-LINLADQVPSFAVNFGQII 116 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135 T+D G R +R K+ G Sbjct: 117 D-FVTNDAGHKTIARDRYRQYKSLG 140 >gi|94311738|ref|YP_584948.1| DNA polymerase III subunit chi [Cupriavidus metallidurans CH34] gi|93355590|gb|ABF09679.1| DNA polymerase III chi subunit [Cupriavidus metallidurans CH34] Length = 144 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L++ Y G++V V + L+ LW++ FLPH Sbjct: 1 MTRIDFHSNVPDTLTYVCRLVRKAYGAGQKVVVHGA-PQQLAQLDARLWSFSPLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + ++ P++L + + LV+ A +E+++ ++ + Sbjct: 59 --CGVDSPNAAVTPIILAAALDGV--PHHQLLVNLAPEAPAQFASFERLIEVVGATPEA 113 >gi|299065990|emb|CBJ37171.1| DNA polymerase III chi subunit [Ralstonia solanacearum CMR15] Length = 142 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G ++ + LWT+ + FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGDRAALEAFDAQLWTFSQLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G ++ P+LL +S + + LV+ + + +++ I+ DD Sbjct: 59 --CGLRHRLAAQTPILLADASEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDDA 115 Query: 120 SLEWG 124 Sbjct: 116 ERAAA 120 >gi|17547133|ref|NP_520535.1| DNA polymerase III subunit chi [Ralstonia solanacearum GMI1000] gi|17429435|emb|CAD16121.1| probable dna polymerase III (chi subunit) protein [Ralstonia solanacearum GMI1000] Length = 142 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G+ ++ + LWT+ + FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G ++ P+LL +S + + LV+ + + +++ I+ DD+ Sbjct: 59 --CGLRHRLAAQTPILLADASEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDEA 115 Query: 120 SLEWG 124 Sbjct: 116 ERAAA 120 >gi|294139601|ref|YP_003555579.1| DNA polymerase III subunit chi [Shewanella violacea DSS12] gi|293326070|dbj|BAJ00801.1| DNA polymerase III, chi subunit [Shewanella violacea DSS12] Length = 156 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 15/145 (10%) Query: 1 MRTLLFYRF----KNDWEYN------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 M LFY + E L QD Y K + V V + +++E LW Sbjct: 1 MPNALFYVMPDEANSPTEATEQVHRLACELAQDAYVKQQLVYVHTRDKEQAYAVDELLWQ 60 Query: 51 WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 ++ + F+PH + EG + PV + +L N + L++ A + +++ Sbjct: 61 FEPNSFVPHNLKG--EGPLTGA-PVEIGFDTLGPNKNRHL-LINLADQVPSFAVNFGQII 116 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135 +D G R +R K+ G Sbjct: 117 D-FVANDTGHKTIARDRYRQYKSLG 140 >gi|307543944|ref|YP_003896423.1| DNA polymerase III subunit chi [Halomonas elongata DSM 2581] gi|307215968|emb|CBV41238.1| DNA polymerase III subunit chi [Halomonas elongata DSM 2581] Length = 151 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + KG R+ + E + +L++ LW ++ D + Sbjct: 1 MTQVDFYILPDTTLDARLEFACRLAETIVNKGYRLHLHAEDEAMARALDDRLWDFRPDAY 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINT 115 LPH + ++ D P + + + +++ +E+V IIN Sbjct: 61 LPHALLGSEQADSV---PATIGWEEPPSPGEPGTQAMLNLHPDIPEWFSRFERVAEIINQ 117 Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137 Q L R W++ K GY Sbjct: 118 H-QEVLTAKRDCWQTYKKRGYP 138 >gi|319793493|ref|YP_004155133.1| DNA polymerase iii chi subunit holc [Variovorax paradoxus EPS] gi|315595956|gb|ADU37022.1| DNA polymerase III chi subunit HolC [Variovorax paradoxus EPS] Length = 147 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 3/138 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEY-EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F+ D L++ +G RV V G D+++ LW F+ H Sbjct: 1 MTEIGFHFNAPDKLNYACRLVRKAVNARGLRVVV-VGDAEALDAVDAALWQLSPVDFVAH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + +L + + A+ LV+ + +E+++ I+ +D+ Sbjct: 60 CRSDAQPHVMARSPVILASEGADAASLPHREMLVNLGLEVPAGFERFERLIDIV-SDEAN 118 Query: 120 SLEWGRAHWRSLKNSGYA 137 + GR+ WR + GY Sbjct: 119 DRQVGRSRWRHYADRGYT 136 >gi|121605068|ref|YP_982397.1| DNA polymerase III subunit chi [Polaromonas naphthalenivorans CJ2] gi|120594037|gb|ABM37476.1| DNA polymerase III, chi subunit [Polaromonas naphthalenivorans CJ2] Length = 146 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y G V+V V L+ LW++ F+PH Sbjct: 1 MTEIAFHFNVPDKLAYGCRLLRKAYLSGATVAVIA-EPEVLAELDALLWSFSATEFVPHC 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G ++ PV+L S + I LV+ G + +E+++ +++ Sbjct: 60 TGAASPGTLAA-TPVVLAASPADCPGRDI--LVNLGQGVPGGFEGFERLIEVVSIH-PED 115 Query: 121 LEWGRAHWRSLKNSGYA 137 + GR W+ GY Sbjct: 116 VPAGRDRWKHYAARGYT 132 >gi|78067265|ref|YP_370034.1| DNA polymerase III subunit chi [Burkholderia sp. 383] gi|77968010|gb|ABB09390.1| DNA polymerase III chi subunit, HolC [Burkholderia sp. 383] Length = 138 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D LL+ Y G+ V V +L+E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLAYACRLLRKAYLAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 G + + ++ P++L T L++ + +E+++ ++ + Sbjct: 59 --CGVDSEHAAGTPIVLAADLDR--TPHHHVLLNLGAAVPAQFARFERLLEVV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|77457215|ref|YP_346720.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf0-1] gi|77381218|gb|ABA72731.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens Pf0-1] Length = 142 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 12/141 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + G R+ + C RD L+ LW +K + F Sbjct: 1 MTKVDFYILPSADPSARLDFACKLTDKAWRMGHRIYLHCSDAAQRDDLDARLWAFKGETF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PHG + ++L + LV+ + +V ++ + Sbjct: 61 VPHGPAESEPEGL-----IVLGVGEDC--GQHTDLLVNLDLKVPVFASKFARVAEVVV-E 112 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 D R +R + GY Sbjct: 113 DPAIRTAARESFRFYREQGYP 133 >gi|83746691|ref|ZP_00943740.1| DNA polymerase III, chi subunit [Ralstonia solanacearum UW551] gi|207742610|ref|YP_002259002.1| dna polymerase III (chi subunit) protein [Ralstonia solanacearum IPO1609] gi|83726644|gb|EAP73773.1| DNA polymerase III, chi subunit [Ralstonia solanacearum UW551] gi|206594004|emb|CAQ60931.1| dna polymerase III (chi subunit) protein [Ralstonia solanacearum IPO1609] Length = 142 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G+ ++ + LWT+ + FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G ++ P+LL S + + L++ + + +++ I+ DD+ Sbjct: 59 --CGLRHPLAAQTPILLADISEPLDDAPHHDILINLSDATPPLFARFARLIEIV-GDDEA 115 Query: 120 SLEWG 124 Sbjct: 116 DRTAA 120 >gi|300703339|ref|YP_003744941.1| DNA polymerase III chi subunit [Ralstonia solanacearum CFBP2957] gi|299071002|emb|CBJ42311.1| DNA polymerase III chi subunit [Ralstonia solanacearum CFBP2957] Length = 142 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G+ ++ + LWT+ + FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G ++ P+LL S + + LV+ + + +++ I+ DD+ Sbjct: 59 --CGLRHPLAAQTPILLADISEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDEA 115 Query: 120 SLEWG 124 Sbjct: 116 DRTAA 120 >gi|257465132|ref|ZP_05629503.1| DNA polymerase III subunit chi [Actinobacillus minor 202] gi|257450792|gb|EEV24835.1| DNA polymerase III subunit chi [Actinobacillus minor 202] Length = 140 Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M+ + FY D + L + GKRV + C +E+ ++E LW + D F+PH Sbjct: 1 MKQVQFYVLTQDNIYEHTCDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + P+ ++ N L+ V + +V+ + + Sbjct: 61 NLSGEV---TQYATPIEISWKGKR-NAQRRELLISLQQDIPEYVASFTQVIEFVPIH-EA 115 Query: 120 SLEWGRAHWRSLKNSG 135 R ++ + G Sbjct: 116 EKTQARERYKQYRQMG 131 >gi|91774579|ref|YP_544335.1| DNA polymerase III, chi subunit [Methylobacillus flagellatus KT] gi|91708566|gb|ABE48494.1| DNA polymerase III, chi subunit [Methylobacillus flagellatus KT] Length = 154 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ + ++ L ++G+R+ V +++ + L +LW+ GFLPH Sbjct: 1 MTRVDFFFNVPNKAAHVASLSSRAVQRGRRLMVLASTQQAAEQLGSFLWSSPPTGFLPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ PV++ I L++ S + + +++ I+ ++ Sbjct: 60 --CHATHPRAAETPVIIDWRHEPLPHDDI--LINLDSQYPPFFSRFRRLIEIV-GLEEED 114 Query: 121 LEWGRAHWRSLKNSGYA 137 R +R ++ GY Sbjct: 115 RAAARERYRFYRDRGYE 131 >gi|160898979|ref|YP_001564561.1| DNA polymerase III chi subunit HolC [Delftia acidovorans SPH-1] gi|160364563|gb|ABX36176.1| DNA polymerase III chi subunit HolC [Delftia acidovorans SPH-1] Length = 143 Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L + ++ V GS + +L+ LW+ FL H Sbjct: 1 MTEVAFHFNAPDKLAYVCRLARKALRHRTQLVVL-GSPPLLKALSPRLWSVSPTDFLAHA 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 GD D +F P++L A LV+ + + +VV +++ D+ Sbjct: 60 -GEGDGADIMAFSPIVLLERLDGA--PHHDMLVNLGGEVPEGFERFARVVEVVSATDEED 116 Query: 121 LEWGRAHWRSLKNSGYA 137 R W+ G + Sbjct: 117 RHLARQRWKHYAAQGIS 133 >gi|34498368|ref|NP_902583.1| DNA polymerase III subunit chi [Chromobacterium violaceum ATCC 12472] gi|34104222|gb|AAQ60581.1| DNA polymerase III, chi subunit [Chromobacterium violaceum ATCC 12472] Length = 141 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 6/139 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY D + L K +R+ + SER + + LW++ F+PH Sbjct: 1 MSRIDFYTNVADPQAFACRLADTVQRKKERLLIWLDSERSVEVFSNRLWSFGDTRFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ PV L S + + L++ + +E+++ I+ D S Sbjct: 60 --CRLGAPEAAETPVWLAASL--PDDLSHPVLLNLGPQLPFEFGRFERILEIV-GRDPES 114 Query: 121 LEWGRAHWRSLKNSGYAPD 139 L R +R+ + G + Sbjct: 115 LATARERFRAYREHGCEIE 133 >gi|207721409|ref|YP_002251850.1| DNA polymerase III subunit chi [Ralstonia solanacearum MolK2] gi|206586568|emb|CAQ17155.1| dna polymerase III (chi subunit) protein [Ralstonia solanacearum MolK2] Length = 142 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G+ ++ + LWT+ + FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G ++ P+LL + + + LV+ + + +++ I+ DD+ Sbjct: 59 --CGLRHPLAAQTPILLADIAEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDEA 115 Query: 120 SLEWG 124 Sbjct: 116 DRTAA 120 >gi|254283213|ref|ZP_04958181.1| DNA polymerase III subunit chi [gamma proteobacterium NOR51-B] gi|219679416|gb|EED35765.1| DNA polymerase III subunit chi [gamma proteobacterium NOR51-B] Length = 116 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 8/116 (6%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y +G RV + +E ++++ LW+ K F+PH + + V +T Sbjct: 3 EKAYHRGHRVLINADTESNAKTIDDLLWSQKAVSFVPHALMSSTTPED-----VTITWGQ 57 Query: 82 LNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 N + L++ A +++V ++ + D +L R WR ++ GY Sbjct: 58 EPDNHDDV--LINLALTAPPWFSRFQRVAEVV-SQDPSALAALRDAWRFYRDRGYP 110 >gi|237749134|ref|ZP_04579614.1| DNA polymerase III chi subunit [Oxalobacter formigenes OXCC13] gi|229380496|gb|EEO30587.1| DNA polymerase III chi subunit [Oxalobacter formigenes OXCC13] Length = 141 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 RV + + + L++ LWT+ FLPH V ++ PV+LT S + Sbjct: 32 RVVIYATDRNLLNRLDDTLWTFSDSDFLPHAVLGDR---HAARCPVILTSSDTDE-LPHS 87 Query: 90 RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + L++ + +E+++ +++T D E GR + + GY Sbjct: 88 QILLNLSPDIPAFYAQFERLLELVST-DPADTEAGRQRYVHYRERGYT 134 >gi|240948837|ref|ZP_04753193.1| DNA polymerase III subunit chi [Actinobacillus minor NM305] gi|240296652|gb|EER47263.1| DNA polymerase III subunit chi [Actinobacillus minor NM305] Length = 140 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M+ + FY D L + GKRV + C +E+ ++E LW + D F+PH Sbjct: 1 MKQVQFYVLTQDNIYEQACDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + P+ ++ N L+ V + +V+ + + Sbjct: 61 NLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQQAIPEYVASFTQVIEFVPIQ-ET 115 Query: 120 SLEWGRAHWRSLKNSG 135 R ++ + G Sbjct: 116 EKAQARERYKQYRQMG 131 >gi|296137007|ref|YP_003644249.1| DNA polymerase III chi subunit HolC [Thiomonas intermedia K12] gi|295797129|gb|ADG31919.1| DNA polymerase III chi subunit HolC [Thiomonas intermedia K12] Length = 141 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 LL+ ++G RV V + L+ LWT++ F+PH V + + PV+L Sbjct: 19 CGLLRTATQRGARVLVAAPEP-LLTELDPLLWTFQPGSFVPH---VWQDDPLADKTPVIL 74 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + LV+ + + E+V+ +++ + R R+ + +G+ Sbjct: 75 APLPDLPRAGRVTALVNLGPDLVTGWESLERVIELVSENGPDK-PAARERLRAYRAAGFD 133 Query: 138 PDVI 141 P +I Sbjct: 134 PAII 137 >gi|161729084|ref|NP_221220.2| DNA polymerase III subunit chi [Rickettsia prowazekii str. Madrid E] gi|292572538|gb|ADE30453.1| DNA polymerase III chi subunit HolC [Rickettsia prowazekii Rp22] Length = 154 Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 1 MRTLLFYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M+ Y N+ +L L++ Y + + ++ LN+ LWT+ + F+PH Sbjct: 1 MQQFSIYHTSNELFLKAILRLIEKCYYSNFKSVILTTDVHQQEMLNKNLWTYSRKQFIPH 60 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV---DEASMHI--GDVDYYEKVVFIIN 114 G + QP+ +T N N +++ ++ D A + + +++++ I + Sbjct: 61 GSKF---DPQPAKQPIYITDELQNPNNASVLVIISPTDIAKILQVKEYIKVFKRIIIITD 117 >gi|6831725|sp|Q9ZC94|Y872_RICPR RecName: Full=Uncharacterized protein RP872 gi|3861397|emb|CAA15296.1| unknown [Rickettsia prowazekii] Length = 165 Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 1 MRTLLFYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M+ Y N+ +L L++ Y + + ++ LN+ LWT+ + F+PH Sbjct: 12 MQQFSIYHTSNELFLKAILRLIEKCYYSNFKSVILTTDVHQQEMLNKNLWTYSRKQFIPH 71 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV---DEASMHI--GDVDYYEKVVFIIN 114 G + QP+ +T N N +++ ++ D A + + +++++ I + Sbjct: 72 GSKF---DPQPAKQPIYITDELQNPNNASVLVIISPTDIAKILQVKEYIKVFKRIIIITD 128 >gi|260221419|emb|CBA29963.1| hypothetical protein Csp_A14780 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 144 Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ + + LL+ +G R++V L+ LW FL H Sbjct: 1 MTDIAFHFGAPNKLEYVGRLLRKAVARGARLTVLAP-PAQVQYLDASLWATSPTDFLVHA 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNA--NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 VD D + PV+LT A N S LV+ + D +E+V+ +++ DD Sbjct: 60 VD--DGQAPHAMCPVVLTSRVHGALKNHS---VLVNLTTAVPADFVQFERVIEVVSVDDD 114 Query: 119 GSLEWGRAHWRSLKNSGYA 137 R WR GY Sbjct: 115 D-RALARNRWRHYVLQGYE 132 >gi|126208969|ref|YP_001054194.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae L20] gi|126097761|gb|ABN74589.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 145 Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFKNDWEYNL-------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY NL L + + GKRV + C +E+ +++E LW Sbjct: 1 MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + P+ ++ N L+ + ++ + +++ + Sbjct: 61 DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDVLISLQTAVPDFINSFNQIIDFV 116 Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135 ++ ++ R ++ + G Sbjct: 117 PANETEKVQ-ARERYKQYRQLG 137 >gi|73542367|ref|YP_296887.1| DNA polymerase III subunit chi [Ralstonia eutropha JMP134] gi|72119780|gb|AAZ62043.1| DNA polymerase III chi subunit, HolC [Ralstonia eutropha JMP134] Length = 144 Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L++ Y G++V V G L+ LWT+ FLPH Sbjct: 1 MTRIDFHSNVPDKLGYICRLVRKAYGAGQKVVVH-GQPAQLAELDARLWTFSPLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 G + + P++L + A + L++ + +E+++ ++ + Sbjct: 59 --CGVDHPNAEVTPIVLAATLDQA--PHHQLLINLDAKAPAQFASFERLIEVVGAGPED 113 >gi|30248459|ref|NP_840529.1| putative DNA polymerase III (chi subunit) protein [Nitrosomonas europaea ATCC 19718] gi|30138345|emb|CAD84353.1| putative DNA polymerase III (chi subunit) protein [Nitrosomonas europaea ATCC 19718] Length = 129 Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 L ++G + V ER+ ++ LWT+ GF+PH + + PV++ Sbjct: 5 CRLCAKAVQQGLKTVVYVPDERLAGQFDKLLWTFTPTGFVPH---CRVDNKLADVTPVIM 61 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 + L++ + + + +VV I++ + G L+ R +R + G+ Sbjct: 62 NSRPVLMEAGCFGVLLNLDADVPPGFEQFPRVVEIVDEAEDGKLQ-ARKRYRHYQEQGH 119 >gi|114046708|ref|YP_737258.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-7] gi|113888150|gb|ABI42201.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-7] Length = 154 Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFK----NDWEYNLLVLLQDEYEKG----KRVSVQCGSERVRDSLNEYLWTWK 52 M LFY N ++ L ++G ++V + C + + ++E LW ++ Sbjct: 1 MTQALFYLLPPMGVNTALSDMYQLACRLAQQGFINQQQVYIHCQDKNIAFEIDELLWQFE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + EG + PV + L N S L++ A + ++ Sbjct: 61 PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 +D R +R + G Sbjct: 116 FVANDDQHKAIARERYRQYRGLGIE 140 >gi|117919581|ref|YP_868773.1| DNA polymerase III chi subunit, HolC [Shewanella sp. ANA-3] gi|117611913|gb|ABK47367.1| DNA polymerase III chi subunit, HolC [Shewanella sp. ANA-3] Length = 154 Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFK----NDWEYNLLVLLQDEYEKG----KRVSVQCGSERVRDSLNEYLWTWK 52 M LFY N ++ L ++G ++V + C + + ++E LW ++ Sbjct: 1 MTQALFYLLPPMGVNTALNDMYQLACRLAQQGFINQQQVYIHCQDKNIAFEIDELLWQFE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + EG + PV + L N S L++ A + ++ Sbjct: 61 PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 +D R +R + G Sbjct: 116 FVANDDQHKAIARERYRQYRGLGIE 140 >gi|226940340|ref|YP_002795414.1| HolC [Laribacter hongkongensis HLHK9] gi|226715267|gb|ACO74405.1| HolC [Laribacter hongkongensis HLHK9] Length = 140 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY D L + KG+R++V E + + LW+ GF+PH Sbjct: 1 MTRVDFYHHVADPLSFACKLTRTVIGKGERLTVLFADEAALGAFDTRLWSVPAQGFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTIS-SLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V + ++ PVLL S T L++ + + +++ I+ +D G Sbjct: 60 --VRLDDPLAAETPVLLATSLPEVPPTG---VLLNLSLGEPAGFPAWPRILEIV-GEDAG 113 Query: 120 SLEWGRAHWRSLKNSG 135 L+ R R+ K +G Sbjct: 114 QLDRAREVARAYKRAG 129 >gi|157960730|ref|YP_001500764.1| DNA polymerase III chi subunit HolC [Shewanella pealeana ATCC 700345] gi|157845730|gb|ABV86229.1| DNA polymerase III chi subunit HolC [Shewanella pealeana ATCC 700345] Length = 163 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 8/131 (6%) Query: 10 KNDWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66 K+ E L Q + + V V C ++ +++E LW ++ F+PH + Sbjct: 25 KSALEQVYLLACQLAQRAFATQQLVYVHCQDQQQAYAIDELLWQFEPQSFVPHNLKGEGT 84 Query: 67 GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRA 126 + PV + L AN L++ A + +++ +D R Sbjct: 85 LGGA---PVEIGFDRLGANKKRHL-LINLADQVPQFAVNFGQIID-FVANDDSHKAIARD 139 Query: 127 HWRSLKNSGYA 137 +R + G A Sbjct: 140 RYRQYRALGIA 150 >gi|167856071|ref|ZP_02478814.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755] gi|219871803|ref|YP_002476178.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165] gi|167852820|gb|EDS24091.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755] gi|219692007|gb|ACL33230.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165] Length = 145 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY + E L + +GKRV + C +E SL+E LW + Sbjct: 1 MKQVQFYLLSQAQAGELSAQEALACDLAAKAWRQGKRVLIACETEEQAFSLDEALWAREA 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + + P+ ++ N L+ + ++ + +++ Sbjct: 61 DDFVPHNLSGEV---TTYATPIEISWKGKR-NAQRRDVLISLQTELPNFINSFNQIID-F 115 Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135 + D+ R ++ + G Sbjct: 116 VSVDETEKVQARERYKQYRQLG 137 >gi|15836741|ref|NP_297429.1| DNA polymerase III subunit chi [Xylella fastidiosa 9a5c] gi|9104922|gb|AAF82949.1|AE003867_3 DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa 9a5c] Length = 141 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 14/141 (9%) Query: 1 MRTLLFYR------FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKD 54 M FY + E L++ Y+ + + + ++L++ LW + D Sbjct: 1 MARADFYLIAKPRFLQQPLELV-CALVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPD 59 Query: 55 GFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 ++PH + DE D PVL+ + + R LV D E+V+ ++ Sbjct: 60 AYIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVP 113 Query: 115 TDDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 114 A-DPAAREPLRERWKHYKARG 133 >gi|322513314|ref|ZP_08066435.1| DNA-directed DNA polymerase III chi subunit [Actinobacillus ureae ATCC 25976] gi|322120913|gb|EFX92765.1| DNA-directed DNA polymerase III chi subunit [Actinobacillus ureae ATCC 25976] Length = 145 Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFKNDWEYNL-------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY + +L L + GKRV + C +E+ ++E LW Sbjct: 1 MKQVKFYLLSQAFSEDLSAAEAMACELSAQAWRLGKRVLISCETEQQALKIDEALWARDP 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + P+ ++ N L+ ++ + +++ + Sbjct: 61 DSFVPHNLSGEV---TQYATPIEISW-PGKRNAQRRDLLISLQKNLPDFINSFNQIIDFV 116 Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135 D+ R ++ + G Sbjct: 117 PA-DEAEKAQARERYKQYRQLG 137 >gi|113969475|ref|YP_733268.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-4] gi|113884159|gb|ABI38211.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-4] Length = 154 Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFK----NDWEYNLLVLLQDEYEKG----KRVSVQCGSERVRDSLNEYLWTWK 52 M LFY N ++ L ++G ++V + C + + ++E LW ++ Sbjct: 1 MTQALFYLLPPVGVNTALNDMYQLACRLAQQGFIHQQQVYIHCQDKNIAFEIDELLWQFE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + EG + PV + L N S L++ A + ++ Sbjct: 61 PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 +D R +R + G Sbjct: 116 FVANDDQHKAIARERYRQYRGLGIE 140 >gi|71901310|ref|ZP_00683407.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1] gi|71728930|gb|EAO31064.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1] Length = 141 Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L++ Y+ + + + ++L++ LW + D Sbjct: 1 MARADFYLISKPRFLKKPLQLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ + + R LV D E+V+ ++ Sbjct: 61 YIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 115 -DPAAREPLRERWKHYKARG 133 >gi|91206236|ref|YP_538591.1| DNA polymerase III subunit chi [Rickettsia bellii RML369-C] gi|157827852|ref|YP_001496916.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389] gi|91069780|gb|ABE05502.1| DNA polymerase III chi subunit HolC [Rickettsia bellii RML369-C] gi|157803156|gb|ABV79879.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389] Length = 153 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 + +L++ Y + V ++ LN+ LWT+ + F+PHG V Sbjct: 14 LLKAIFLLIEKCYYSDLKSVVLTVDTEQQEMLNKNLWTYSRKQFIPHGSKV---DPQPEK 70 Query: 73 QPVLLTISSLNANTSTIRFLVDEASMH-----IGDVDYYEKVVFI 112 QP+ +T + N N +++ ++ ++ V +++++ I Sbjct: 71 QPIYITDTLQNPNNASVLIIISPTNIEKILQAKEYVSDFKRIIII 115 >gi|90416558|ref|ZP_01224489.1| DNA polymerase III, chi subunit [marine gamma proteobacterium HTCC2207] gi|90331757|gb|EAS46985.1| DNA polymerase III, chi subunit [marine gamma proteobacterium HTCC2207] Length = 143 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 14/141 (9%) Query: 1 MRTLLFYRFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M ++ FY+ D + L L Q ++V + L++ LW ++ F+ Sbjct: 1 MTSVSFYKLSGDLQVALALVCQLTQKAVNAKQQVLCLVPDNDTAEQLDKLLWGFQASAFV 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PHGV + P+ ++ S + L++ +E+V+ +I Sbjct: 61 PHGVGI-------EHLPIAISADSSDP-GEHHGILINLQGAIPTWFSRFERVMEVI--YP 110 Query: 118 QGSLEWG-RAHWRSLKNSGYA 137 + E R +++ K GY Sbjct: 111 EPDYEQAKRDNFKFYKERGYP 131 >gi|165976934|ref|YP_001652527.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150834|ref|YP_001969359.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253014|ref|ZP_07339168.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248547|ref|ZP_07530563.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307264184|ref|ZP_07545776.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165877035|gb|ABY70083.1| DNA polymerase III chi subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915965|gb|ACE62217.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648146|gb|EFL78348.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854942|gb|EFM87129.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870475|gb|EFN02227.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 145 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFKNDWEYNL-------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY NL L + + GKRV + C +E+ +++E LW Sbjct: 1 MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + P+ ++ N L+ + ++ + +++ + Sbjct: 61 DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQTAVPDFINSFNQIIDFV 116 Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135 ++ ++ R ++ + G Sbjct: 117 PANETEKVQ-ARERYKQYRQLG 137 >gi|24374933|ref|NP_718976.1| DNA polymerase III, chi subunit [Shewanella oneidensis MR-1] gi|24349645|gb|AAN56420.1|AE015778_8 DNA polymerase III, chi subunit [Shewanella oneidensis MR-1] Length = 154 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYNL--------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M LFY E L Q + ++V + C + V ++E LW + Sbjct: 1 MTQALFYLMPPTGENTALSDLYQLACRLSQRAFIDQQQVYIHCQDKNVAFEIDELLWQFD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + EG + PV + L N S L++ A + ++ Sbjct: 61 PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 +D R +R + G Sbjct: 116 FVANDDQHKVIARERYRQYRGLGIE 140 >gi|157374148|ref|YP_001472748.1| DNA polymerase III chi subunit, HolC [Shewanella sediminis HAW-EB3] gi|157316522|gb|ABV35620.1| DNA polymerase III chi subunit, HolC [Shewanella sediminis HAW-EB3] Length = 156 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 15/145 (10%) Query: 1 MRTLLFYRFKN-------DWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 M LFY E L Q + + + V + C +++E LW Sbjct: 1 MTQTLFYLMPTEPRSSGTALEQMYHLACELAQQAFMQQQLVYLHCQDREQAYAIDELLWQ 60 Query: 51 WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 ++ F+PH + + PV + L N + L++ A + +++ Sbjct: 61 FEPRSFVPHNLKGEGPTTGA---PVEIGFDKLGPNKNRHL-LINLADQVPSFAVNFGQII 116 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135 +D R +R ++ G Sbjct: 117 D-FVANDTSHKAIARDRYRQYRSLG 140 >gi|121594282|ref|YP_986178.1| DNA polymerase III chi subunit, HolC [Acidovorax sp. JS42] gi|120606362|gb|ABM42102.1| DNA polymerase III chi subunit, HolC [Acidovorax sp. JS42] Length = 146 Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L++ + RV+V G L+ LW F+ H Sbjct: 1 MTQVAFHFNAPDKLAYVCRLVRKATRQDARVTV-TGDADTLLRLDRQLWALAPSDFVGHC 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + DE + VL+ + N LV+ ++ Y +VV +++ D+ Sbjct: 60 LGDADEEILRASPTVLVQDPRTSPNRD---VLVNLGNVLPEGFAQYARVVEVVSQVDEDD 116 Query: 121 LEWGRAHWRSLKNSGY 136 + R WR GY Sbjct: 117 RKRARERWRGYAALGY 132 >gi|307261985|ref|ZP_07543641.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868316|gb|EFN00137.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 145 Score = 78.6 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY + E L D + GKRV + C +E+ +++E LW Sbjct: 1 MKQVKFYLLNQAGGQELSAVEAMACDLAADAWRLGKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + P+ ++ N L+ + ++ + +++ + Sbjct: 61 DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQTAVPDFINSFNQIIDFV 116 Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135 D+ R ++ + G Sbjct: 117 PV-DEAEKAQARERYKQYRQLG 137 >gi|253997953|ref|YP_003050016.1| DNA polymerase III chi subunit HolC [Methylovorus sp. SIP3-4] gi|253984632|gb|ACT49489.1| DNA polymerase III chi subunit HolC [Methylovorus sp. SIP3-4] Length = 142 Score = 78.6 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 8/138 (5%) Query: 1 MRTL-LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F+ N + L Q KG+R+ V E V L LW+ F+PH Sbjct: 1 MTRIEFFFNVGNKLDKVA-ELSQRAVSKGRRMMVFGPDEAVLSELERVLWSGSALSFVPH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + + P++L + L++ H + +++ I+ D+ Sbjct: 60 ---CRAQHPLAPETPIVLDFKGEPLIHDDV--LINLQHQHPPFFSRFRRLIEIV-GKDEA 113 Query: 120 SLEWGRAHWRSLKNSGYA 137 R +R ++ GY Sbjct: 114 DKAQARVRYRFYRDRGYE 131 >gi|303251672|ref|ZP_07337845.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307246420|ref|ZP_07528494.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250778|ref|ZP_07532709.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253153|ref|ZP_07535032.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255405|ref|ZP_07537213.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257574|ref|ZP_07539335.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259855|ref|ZP_07541571.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302649514|gb|EFL79697.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852671|gb|EFM84902.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857190|gb|EFM89315.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859366|gb|EFM91400.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861634|gb|EFM93620.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863922|gb|EFM95844.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866078|gb|EFM97950.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 145 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY + E L D + GKRV + C +E+ +++E LW Sbjct: 1 MKQVKFYLLNQAGGQELSAVEAMACDLAADAWRLGKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + P+ ++ N L+ + ++ + +++ + Sbjct: 61 DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQTAVPDFINSFNQIIDFV 116 Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135 ++ ++ R ++ + G Sbjct: 117 PANETEKVQ-ARERYKQYRQLG 137 >gi|222110919|ref|YP_002553183.1| DNA polymerase iii subunit chi holc [Acidovorax ebreus TPSY] gi|221730363|gb|ACM33183.1| DNA polymerase III chi subunit HolC [Acidovorax ebreus TPSY] Length = 146 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L++ + RV+V G L+ LW F+ H Sbjct: 1 MTQVAFHFNAPDKLAYVCRLVRKATRQEARVTV-TGDADTLLRLDRQLWALAPSDFVGHC 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + DE + VL+ + N LV+ ++ Y +VV +++ D+ Sbjct: 60 LGDADEEILRASPTVLVQDPRTSPNRD---VLVNLGNVLPEGFAQYARVVEVVSQADEDD 116 Query: 121 LEWGRAHWRSLKNSGY 136 + R WR GY Sbjct: 117 RKRARERWRGYAALGY 132 >gi|170725422|ref|YP_001759448.1| DNA polymerase III chi subunit HolC [Shewanella woodyi ATCC 51908] gi|169810769|gb|ACA85353.1| DNA polymerase III chi subunit HolC [Shewanella woodyi ATCC 51908] Length = 156 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 15/145 (10%) Query: 1 MRTLLFYRFKN-------DWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 M LFY E L Q + K + V C +++E LW Sbjct: 1 MTQTLFYLMPTEPRSSGTALEQMFHLACELAQQAFIKQQLVYFHCQDREQAYAIDELLWQ 60 Query: 51 WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 ++ F+PH + + PV + +L N + L++ A + +++ Sbjct: 61 FEPRSFVPHNLKGEGPTTGA---PVEIGFDNLGPNKNRHL-LINLADQVPSFAVNFGQII 116 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135 +D G R +R ++ G Sbjct: 117 D-FVANDTGHKAIARERYRQYRSLG 140 >gi|187929749|ref|YP_001900236.1| DNA polymerase III subunit chi [Ralstonia pickettii 12J] gi|309781535|ref|ZP_07676271.1| DNA polymerase III, chi subunit [Ralstonia sp. 5_7_47FAA] gi|187726639|gb|ACD27804.1| DNA polymerase III chi subunit HolC [Ralstonia pickettii 12J] gi|308919948|gb|EFP65609.1| DNA polymerase III, chi subunit [Ralstonia sp. 5_7_47FAA] Length = 142 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G + + + LWT+ + FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGDQAALQAFDTQLWTFSQLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIIN 114 G ++ P+LL ++ + + LV+ + + +++ I+ Sbjct: 59 --CGLRHPLAAQTPILLADATEPLDDAPHHDILVNLSPEPPALFARFSRLIEIVG 111 >gi|313200019|ref|YP_004038677.1| DNA polymerase III chi subunit holc [Methylovorus sp. MP688] gi|312439335|gb|ADQ83441.1| DNA polymerase III chi subunit HolC [Methylovorus sp. MP688] Length = 142 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 8/138 (5%) Query: 1 MRTL-LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F+ N + L Q KG+R+ V E V L LW+ F+PH Sbjct: 1 MTRIEFFFNVGNKLDKVA-ELSQRAVSKGRRMMVFGPDEAVLSELERVLWSGSALSFVPH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + + P++L + L++ H + +++ I+ D+ Sbjct: 60 ---CRAQHPLAPETPIVLDFKGEPLIHDDV--LINLQHQHPPFFSRFRRLIEIV-GQDEA 113 Query: 120 SLEWGRAHWRSLKNSGYA 137 R +R ++ GY Sbjct: 114 DKAQARVRYRFYRDRGYE 131 >gi|288937435|ref|YP_003441494.1| DNA-directed DNA polymerase [Klebsiella variicola At-22] gi|290512176|ref|ZP_06551543.1| DNA polymerase III subunit chi [Klebsiella sp. 1_1_55] gi|288892144|gb|ADC60462.1| DNA-directed DNA polymerase [Klebsiella variicola At-22] gi|289775171|gb|EFD83172.1| DNA polymerase III subunit chi [Klebsiella sp. 1_1_55] Length = 147 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + E + + + + GKRV + C E+ L+E LW+ Sbjct: 1 MKNATFYLLDNENTVEGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 61 PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEENLKQLARERYKAYRMAGFN 140 >gi|145300685|ref|YP_001143526.1| DNA polymerase III, chi subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142853457|gb|ABO91778.1| DNA polymerase III, chi subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 177 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 17/147 (11%) Query: 1 MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M + FY + E L + + G + + C E L+E LW Sbjct: 27 MSQVTFYLMNEQDDAQASAVERLACQLAAESWGAGH-LYLFCDDEAQALRLDELLWQLPP 85 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 + F+PH + PV + + L++ A ++ +VV + Sbjct: 86 ERFVPHQLQGESGQA-----PVEIGHQPPKRRYAR---LINLARETPLFAGHFAQVVDFV 137 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDV 140 T D+ + R ++ + +G+A ++ Sbjct: 138 PT-DETQKQQARERYKHYRQAGHALEM 163 >gi|152973136|ref|YP_001338282.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957985|gb|ABR80015.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 147 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW+ Sbjct: 1 MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 61 PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEENLKQLARERYKAYRMAGFN 140 >gi|85374601|ref|YP_458663.1| DNA polymerase III chi subunit [Erythrobacter litoralis HTCC2594] gi|84787684|gb|ABC63866.1| DNA polymerase III chi subunit [Erythrobacter litoralis HTCC2594] Length = 144 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%) Query: 6 FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 F++ ++ + + ++ ++G+R+ V + R ++ + LW K + FL +G Sbjct: 5 FWQLSRDPADKVVAMIAARVLDEGERLLVVAKDDEKRAAIAKALWEAKPEHFLANG---E 61 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124 D + QP+LL + AN ++ D D +E+ + +LE Sbjct: 62 ASADHAERQPILLGETCEAANGASHVIFADG---EWRDPHGFERAFLLF---SDETLEAA 115 Query: 125 RAHWRSL 131 RA WR+L Sbjct: 116 RATWRAL 122 >gi|295097700|emb|CBK86790.1| DNA polymerase III, chi subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 147 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 61 PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRTDFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEESLKQLARERYKAYRLAGFN 140 >gi|71275901|ref|ZP_00652184.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Dixon] gi|71899261|ref|ZP_00681423.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1] gi|170729348|ref|YP_001774781.1| DNA polymerase III subunit chi [Xylella fastidiosa M12] gi|71163278|gb|EAO12997.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Dixon] gi|71730994|gb|EAO33063.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1] gi|167964141|gb|ACA11151.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa M12] Length = 141 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND--WEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY E L L++ Y+ + + + ++L++ LW + D Sbjct: 1 MARADFYLISKPRFLEKPLQLVCELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ + + R LV D E+V+ ++ Sbjct: 61 YIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 115 -DPAAREPLRERWKHYKTRG 133 >gi|28198040|ref|NP_778354.1| DNA polymerase III subunit chi [Xylella fastidiosa Temecula1] gi|182680667|ref|YP_001828827.1| DNA polymerase III subunit chi [Xylella fastidiosa M23] gi|28056100|gb|AAO28003.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa Temecula1] gi|182630777|gb|ACB91553.1| DNA polymerase III chi subunit HolC [Xylella fastidiosa M23] gi|307579128|gb|ADN63097.1| DNA polymerase III subunit chi [Xylella fastidiosa subsp. fastidiosa GB514] Length = 141 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND--WEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY E L L++ Y+ + + + ++L++ LW + D Sbjct: 1 MARADFYLIAKPRFLEKPLQLVCELVRKAYDTHQPTLILARDQAQAEALDDLLWAFDPDA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ + + R LV D E+V+ ++ Sbjct: 61 YIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 115 -DPAAREPLRERWKHYKARG 133 >gi|238892748|ref|YP_002917482.1| DNA polymerase III subunit chi [Klebsiella pneumoniae NTUH-K2044] gi|238545064|dbj|BAH61415.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 158 Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW+ Sbjct: 12 MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 71 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 72 PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 127 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 128 VP-YEDNLKQLARERYKAYRMAGFN 151 >gi|261342658|ref|ZP_05970516.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC 35316] gi|288315307|gb|EFC54245.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC 35316] Length = 147 Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTQQDGLSAVEQLVCDIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +VV Sbjct: 61 PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRIDFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-HEESLKQLARERYKAYRLAGFN 140 >gi|262045297|ref|ZP_06018322.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330016473|ref|ZP_08308446.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3] gi|259037353|gb|EEW38599.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328528834|gb|EGF55777.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3] Length = 147 Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW+ Sbjct: 1 MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 61 PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDNLKQLARERYKAYRMAGFN 140 >gi|146313283|ref|YP_001178357.1| DNA polymerase III subunit chi [Enterobacter sp. 638] gi|145320159|gb|ABP62306.1| DNA polymerase III, chi subunit [Enterobacter sp. 638] Length = 147 Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 61 PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRTGFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-HEDSLKQLARERYKAYRLAGFN 140 >gi|296104926|ref|YP_003615072.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059385|gb|ADF64123.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 147 Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +VV Sbjct: 61 PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRIDFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEESLKQLARERYKAYRLAGFN 140 >gi|171059275|ref|YP_001791624.1| DNA polymerase III chi subunit HolC [Leptothrix cholodnii SP-6] gi|170776720|gb|ACB34859.1| DNA polymerase III chi subunit HolC [Leptothrix cholodnii SP-6] Length = 145 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 2/139 (1%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ + LL+ G RV+V G L+ LW + F+PH Sbjct: 3 MGAVAFHFNVPQRQDYTCRLLRKACRAGARVAV-TGDSAALGELDRQLWIFDPIDFVPHW 61 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 V + + + + + + L++ A + +V+ ++ + Sbjct: 62 RGVSADRLPARLKATPIVLLDQAGTQAGHDVLLNLAEQVPDCASQFARVIEVV-GRSEAD 120 Query: 121 LEWGRAHWRSLKNSGYAPD 139 R WR + G A + Sbjct: 121 RSQARLRWRHYASLGAAIE 139 >gi|238787642|ref|ZP_04631440.1| DNA polymerase III, chi subunit HolC [Yersinia frederiksenii ATCC 33641] gi|238724429|gb|EEQ16071.1| DNA polymerase III, chi subunit HolC [Yersinia frederiksenii ATCC 33641] Length = 149 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + GKRV + C S+ L+E LW Sbjct: 1 MKNATFYLLEHDTPVGELRAHEALACEVAAARWRAGKRVLIACESQEQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L+ N+ L+ G + +VV Sbjct: 61 PEQFVPHNLAGEGPKYGA---PVELSWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|238798774|ref|ZP_04642245.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC 43969] gi|238717406|gb|EEQ09251.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC 43969] Length = 149 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + + GKRV + C SE L+E LW Sbjct: 1 MKNATFYLLEHDTPAGELRAHEALACEVAAERWRAGKRVLIACESEEQAQRLDEALWQRT 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + + PV L N+ L+ G + +VV Sbjct: 61 PDQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|160876369|ref|YP_001555685.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195] gi|160861891|gb|ABX50425.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195] Length = 174 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 28/158 (17%) Query: 1 MRTLLFYRF-----------KNDWEYN------------LLVLLQDEYEKGKRVSVQCGS 37 M +LFY + L Q + K + V + C Sbjct: 8 MTQVLFYLMPPVASIAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQD 67 Query: 38 ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97 ++ +++E LW ++ F+PH + EG + PV + L AN S + L++ A Sbjct: 68 KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 123 Query: 98 MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + ++ +D R +R + G Sbjct: 124 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 160 >gi|325921200|ref|ZP_08183065.1| DNA polymerase III, chi subunit [Xanthomonas gardneri ATCC 19865] gi|325548318|gb|EGD19307.1| DNA polymerase III, chi subunit [Xanthomonas gardneri ATCC 19865] Length = 141 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L + Y+ + ++L++ LW + + Sbjct: 1 MPRADFYLIAKPRFLNEPLRLVCELARKAYDANLSTLILARDAEQAEALDDLLWAFDDEA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ A + R LV + ++V+ ++ Sbjct: 61 YIPHQIAGTDEED--ELAPVLIAAPEFTAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137 D + E R W+ K G A Sbjct: 115 -DPAAREPLRERWKQYKALGLA 135 >gi|22124657|ref|NP_668080.1| DNA polymerase III subunit chi [Yersinia pestis KIM 10] gi|21957466|gb|AAM84331.1|AE013676_4 DNA polymerase III, chi subunit [Yersinia pestis KIM 10] Length = 158 Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + + GKRV + C S+ L+E LW Sbjct: 10 MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACESQEQAQRLDEALWQRA 69 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+ L+ G + +VV Sbjct: 70 PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 125 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 126 VP-YEENLKQLARDRYKSYRSVGF 148 >gi|304410151|ref|ZP_07391770.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183] gi|307302138|ref|ZP_07581896.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175] gi|304351560|gb|EFM15959.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183] gi|306914176|gb|EFN44597.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175] Length = 165 Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 28/157 (17%) Query: 1 MRTLLFYRFKNDWEYNL----------------------LVLLQDEYEKGKRVSVQCGSE 38 M +LFY L Q + K + V + C + Sbjct: 1 MTQVLFY-LMPPVASTAKADSSVATVNANPALCEMHLLACQLAQQAFVKQQWVYIHCQDK 59 Query: 39 RVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM 98 + +++E LW ++ F+PH + EG + PV + L AN S + L++ A Sbjct: 60 QQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLADQ 115 Query: 99 HIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + ++ +D R +R + G Sbjct: 116 APPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 151 >gi|206580465|ref|YP_002240780.1| DNA polymerase III, chi subunit [Klebsiella pneumoniae 342] gi|206569523|gb|ACI11299.1| DNA polymerase III, chi subunit [Klebsiella pneumoniae 342] Length = 147 Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + E + + + + GKRV + C E+ L+E LW+ Sbjct: 1 MKNATFYLLDNENTVEGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 61 PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRMAGFN 140 >gi|161617771|ref|YP_001591736.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161367135|gb|ABX70903.1| hypothetical protein SPAB_05634 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 174 Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 28 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 87 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 88 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 143 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 144 VP-YEETLKQLARERYKAYRVAGFN 167 >gi|16763277|ref|NP_458894.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144756|ref|NP_808098.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56416248|ref|YP_153323.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197262429|ref|ZP_03162503.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197365171|ref|YP_002144808.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245468|ref|YP_002218340.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|25355624|pir||AD1061 DNA polymerase III, chi chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505585|emb|CAD06937.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29140395|gb|AAO71958.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130505|gb|AAV80011.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096648|emb|CAR62263.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240684|gb|EDY23304.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939984|gb|ACH77317.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326626148|gb|EGE32493.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 160 Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153 >gi|16423041|gb|AAL23295.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261249564|emb|CBG27431.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|323132813|gb|ADX20243.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332991285|gb|AEF10268.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 160 Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153 >gi|126175312|ref|YP_001051461.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS155] gi|125998517|gb|ABN62592.1| DNA polymerase III chi subunit, HolC [Shewanella baltica OS155] Length = 174 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 28/158 (17%) Query: 1 MRTLLFYR-----FKNDWEYNLLV------------------LLQDEYEKGKRVSVQCGS 37 M +LFY + + V L Q + K + V + C Sbjct: 8 MTQVLFYLMPPVALTAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQD 67 Query: 38 ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97 ++ +++E LW ++ F+PH + EG + PV + L AN S + L++ A Sbjct: 68 KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 123 Query: 98 MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + ++ +D R +R + G Sbjct: 124 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 160 >gi|117619980|ref|YP_858155.1| DNA polymerase III, chi subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561387|gb|ABK38335.1| DNA polymerase III, chi subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 151 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 17/147 (11%) Query: 1 MRTLLFYRF-------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M + FY + E L+ D + G + + C E L+E LW Sbjct: 1 MSQVTFYLMSEQDDAQASAVERLACQLVADSWGAGH-LYLLCDDEAQALRLDELLWQLPP 59 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 + F+PH + PV + + L++ A ++ +VV + Sbjct: 60 ERFVPHQLQGESGQA-----PVEIGHQPPRRRYAR---LINLAKQTPLFAGHFAQVVDFV 111 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDV 140 T D+ + R ++ + +G+A ++ Sbjct: 112 PT-DETQKQQARERYKHYRQAGHALEM 137 >gi|325499817|gb|EGC97676.1| DNA polymerase III subunit chi [Escherichia fergusonii ECD227] Length = 160 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +N+ L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSNSPR-DILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153 >gi|241663804|ref|YP_002982164.1| DNA polymerase III subunit chi [Ralstonia pickettii 12D] gi|240865831|gb|ACS63492.1| DNA polymerase III chi subunit HolC [Ralstonia pickettii 12D] Length = 142 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ L++ Y G++V V G + ++ + LWT+ FLPH Sbjct: 1 MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGDQVALEAFDTQLWTFSPLDFLPH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIIN 114 G ++ P+LL ++ + + LV+ + + +++ I+ Sbjct: 59 --CGLRHSLAAQTPILLADATEPLDDAPHHDILVNLSPEPPALFARFSRLIEIVG 111 >gi|331007481|ref|ZP_08330652.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989] gi|330418705|gb|EGG93200.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989] Length = 144 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 7/141 (4%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY L + G+ V ++ E DSL+EYLW++K + F Sbjct: 1 MTEVDFYILPESTLAARDHFACRLAEKALHTGRHVVIRVSDEAHADSLSEYLWSFKPEAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH D + + V++ N +++ G+ + K+ I+ Sbjct: 61 VPHCFSSSDPSSTGTTEKVVIDWQGYTDN--YHDVIINLQQAIPGEFSRFNKLSEIVV-Q 117 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 ++ L R ++ ++ GY Sbjct: 118 EEKLLTITRESFQHYRDRGYP 138 >gi|39546402|ref|NP_463336.2| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62182902|ref|YP_219319.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167551268|ref|ZP_02345023.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991265|ref|ZP_02572364.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168244035|ref|ZP_02668967.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464642|ref|ZP_02698545.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821099|ref|ZP_02833099.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445428|ref|YP_002043716.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449358|ref|YP_002048500.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197247365|ref|YP_002149396.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|207859602|ref|YP_002246253.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161211|ref|ZP_03346921.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419117|ref|ZP_03352183.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427637|ref|ZP_03360387.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586776|ref|ZP_03368602.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650370|ref|ZP_03380423.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857513|ref|ZP_03384484.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238910632|ref|ZP_04654469.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824524|ref|ZP_06544083.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|62130535|gb|AAX68238.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404091|gb|ACF64313.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407662|gb|ACF67881.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195632900|gb|EDX51354.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211068|gb|ACH48465.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205323926|gb|EDZ11765.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330399|gb|EDZ17163.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337015|gb|EDZ23779.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342292|gb|EDZ29056.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711405|emb|CAR35784.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267996820|gb|ACY91705.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160960|emb|CBW20494.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915573|dbj|BAJ39547.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222553|gb|EFX47625.1| DNA polymerase III chi subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615640|gb|EFY12560.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618700|gb|EFY15589.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621887|gb|EFY18737.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627612|gb|EFY24403.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630918|gb|EFY27682.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637863|gb|EFY34564.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642321|gb|EFY38927.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643904|gb|EFY40452.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651020|gb|EFY47405.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656727|gb|EFY53015.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659849|gb|EFY56092.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661940|gb|EFY58156.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666312|gb|EFY62490.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672731|gb|EFY68842.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676161|gb|EFY72232.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680645|gb|EFY76683.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684461|gb|EFY80465.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717405|gb|EFZ08976.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323194202|gb|EFZ79399.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197347|gb|EFZ82487.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201535|gb|EFZ86599.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206049|gb|EFZ91011.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213060|gb|EFZ97862.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215431|gb|EGA00175.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219415|gb|EGA03900.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227719|gb|EGA11873.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228889|gb|EGA13018.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236499|gb|EGA20575.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240000|gb|EGA24047.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241953|gb|EGA25982.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247898|gb|EGA31835.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251464|gb|EGA35335.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258170|gb|EGA41847.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263684|gb|EGA47205.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265720|gb|EGA49216.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270164|gb|EGA53612.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 147 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140 >gi|167622894|ref|YP_001673188.1| DNA polymerase III chi subunit HolC [Shewanella halifaxensis HAW-EB4] gi|167352916|gb|ABZ75529.1| DNA polymerase III chi subunit HolC [Shewanella halifaxensis HAW-EB4] Length = 167 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%) Query: 10 KNDWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66 K E L + + + V + C ++ +++E LW ++ F+PH + Sbjct: 29 KTALEQVYLLACQLAERAFTAHELVYIHCQDQQQAYAVDELLWQFEPQSFVPHNLKGEGP 88 Query: 67 GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRA 126 + PV + L AN L++ A + +++ +D R Sbjct: 89 LGGA---PVEIGFDRLGANKKRHL-LINLADQVPQFAVNFGQIID-FVANDDSHKAIARD 143 Query: 127 HWRSLKNSGYA 137 +R + G A Sbjct: 144 RYRQYRALGIA 154 >gi|330827960|ref|YP_004390912.1| DNA polymerase III subunit chi [Aeromonas veronii B565] gi|328803096|gb|AEB48295.1| DNA polymerase III, chi subunit [Aeromonas veronii B565] Length = 151 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 17/147 (11%) Query: 1 MRTLLFYRF-------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M + FY + E L + + G + + C E L+E LW Sbjct: 1 MSQVTFYLMSEQDDAQASAVERLACTLAAESWGAGH-IYLFCNDEAQALRLDELLWQLPP 59 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 + F+PH + PV + + L++ A ++ +VV + Sbjct: 60 ERFVPHQLQGESGQA-----PVEIGHQPPRRRYAR---LINLAKQTPLFAGHFAQVVDFV 111 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDV 140 T D+ + R ++ + +G+A ++ Sbjct: 112 PT-DETQKQQARERYKHYRQAGHALEM 137 >gi|45440494|ref|NP_992033.1| DNA polymerase III subunit chi [Yersinia pestis biovar Microtus str. 91001] gi|51594882|ref|YP_069073.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis IP 32953] gi|108808934|ref|YP_652850.1| DNA polymerase III subunit chi [Yersinia pestis Antiqua] gi|108810811|ref|YP_646578.1| DNA polymerase III subunit chi [Yersinia pestis Nepal516] gi|123440872|ref|YP_001004863.1| DNA polymerase III subunit chi [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145600506|ref|YP_001164582.1| DNA polymerase III subunit chi [Yersinia pestis Pestoides F] gi|153948188|ref|YP_001402498.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis IP 31758] gi|153997516|ref|ZP_02022616.1| DNA polymerase III, chi subunit [Yersinia pestis CA88-4125] gi|162419828|ref|YP_001608337.1| DNA polymerase III subunit chi [Yersinia pestis Angola] gi|165925832|ref|ZP_02221664.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165936725|ref|ZP_02225292.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166010088|ref|ZP_02230986.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166214283|ref|ZP_02240318.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399382|ref|ZP_02304906.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420797|ref|ZP_02312550.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423580|ref|ZP_02315333.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470533|ref|ZP_02335237.1| DNA polymerase III subunit chi [Yersinia pestis FV-1] gi|170025895|ref|YP_001722400.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis YPIII] gi|186893892|ref|YP_001871004.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis PB1/+] gi|218930458|ref|YP_002348333.1| DNA polymerase III subunit chi [Yersinia pestis CO92] gi|229839086|ref|ZP_04459245.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896574|ref|ZP_04511741.1| DNA polymerase III, chi subunit [Yersinia pestis Pestoides A] gi|229899649|ref|ZP_04514790.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901014|ref|ZP_04516138.1| DNA polymerase III, chi subunit [Yersinia pestis Nepal516] gi|270489194|ref|ZP_06206268.1| DNA polymerase III subunit chi [Yersinia pestis KIM D27] gi|294505146|ref|YP_003569208.1| DNA polymerase III subunit chi [Yersinia pestis Z176003] gi|332160135|ref|YP_004296712.1| DNA polymerase III subunit chi [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|45435351|gb|AAS60910.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Microtus str. 91001] gi|51588164|emb|CAH19770.1| DNA polymerase III, chi subunit [Yersinia pseudotuberculosis IP 32953] gi|108774459|gb|ABG16978.1| DNA polymerase III, chi subunit [Yersinia pestis Nepal516] gi|108780847|gb|ABG14905.1| DNA polymerase III, chi subunit [Yersinia pestis Antiqua] gi|115349069|emb|CAL22031.1| DNA polymerase III, chi subunit [Yersinia pestis CO92] gi|122087833|emb|CAL10619.1| DNA polymerase III, chi subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145212202|gb|ABP41609.1| DNA polymerase III, chi subunit [Yersinia pestis Pestoides F] gi|149289153|gb|EDM39233.1| DNA polymerase III, chi subunit [Yersinia pestis CA88-4125] gi|152959683|gb|ABS47144.1| DNA polymerase III, chi subunit [Yersinia pseudotuberculosis IP 31758] gi|162352643|gb|ABX86591.1| DNA polymerase III, chi subunit [Yersinia pestis Angola] gi|165915374|gb|EDR33984.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922444|gb|EDR39621.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165990995|gb|EDR43296.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166204515|gb|EDR48995.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166961603|gb|EDR57624.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051886|gb|EDR63294.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057750|gb|EDR67496.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752429|gb|ACA69947.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|186696918|gb|ACC87547.1| DNA polymerase III chi subunit HolC [Yersinia pseudotuberculosis PB1/+] gi|229682353|gb|EEO78445.1| DNA polymerase III, chi subunit [Yersinia pestis Nepal516] gi|229687141|gb|EEO79216.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695452|gb|EEO85499.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700352|gb|EEO88384.1| DNA polymerase III, chi subunit [Yersinia pestis Pestoides A] gi|262363208|gb|ACY59929.1| DNA polymerase III subunit chi [Yersinia pestis D106004] gi|262367139|gb|ACY63696.1| DNA polymerase III subunit chi [Yersinia pestis D182038] gi|270337698|gb|EFA48475.1| DNA polymerase III subunit chi [Yersinia pestis KIM D27] gi|294355605|gb|ADE65946.1| DNA polymerase III subunit chi [Yersinia pestis Z176003] gi|318607299|emb|CBY28797.1| DNA polymerase III chi subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|320016645|gb|ADW00217.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325664365|gb|ADZ41009.1| DNA polymerase III subunit chi [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859701|emb|CBX70037.1| DNA polymerase III subunit chi [Yersinia enterocolitica W22703] Length = 149 Score = 77.5 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + + GKRV + C S+ L+E LW Sbjct: 1 MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACESQEQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+ L+ G + +VV Sbjct: 61 PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|194735547|ref|YP_002117397.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300603|ref|ZP_02659664.2| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|200387328|ref|ZP_03213940.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927029|ref|ZP_03218231.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224586300|ref|YP_002640099.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|194711049|gb|ACF90270.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291664|gb|EDY31014.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604426|gb|EDZ02971.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323694|gb|EDZ08889.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224470828|gb|ACN48658.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088908|emb|CBY98666.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 160 Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153 >gi|153001633|ref|YP_001367314.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185] gi|151366251|gb|ABS09251.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185] Length = 174 Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 28/158 (17%) Query: 1 MRTLLFYRF-----------KNDWEYN------------LLVLLQDEYEKGKRVSVQCGS 37 M +LFY + L Q + K + V + C Sbjct: 8 MTQVLFYLMPPVASIAKAKADSPVATANATPALCEMHLLACQLAQQAFVKQQWVYIHCQD 67 Query: 38 ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97 ++ +++E LW ++ F+PH + EG + PV + L AN S + L++ A Sbjct: 68 KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 123 Query: 98 MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + ++ +D R +R + G Sbjct: 124 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 160 >gi|304413754|ref|ZP_07395198.1| DNA polymerase III chi subunit [Candidatus Regiella insecticola LSR1] gi|304283845|gb|EFL92239.1| DNA polymerase III chi subunit [Candidatus Regiella insecticola LSR1] Length = 204 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E L + GKRV + C S + + L+E LW + F+PH + + Sbjct: 78 EALACELAAKYWRLGKRVLIACESLQQAERLDEALWQRSPEQFVPHNLAGEGPKQGA--- 134 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 P+ L ++ L++ V +++V+ + ++ + R ++S + Sbjct: 135 PIELAWPERRGSSPRHL-LINLLPQLADFVTVFQEVIDFVP-YEEHLKQLARERYKSYRR 192 Query: 134 SGY 136 G+ Sbjct: 193 VGF 195 >gi|260596294|ref|YP_003208865.1| DNA polymerase III subunit chi [Cronobacter turicensis z3032] gi|260215471|emb|CBA27587.1| DNA polymerase III subunit chi [Cronobacter turicensis z3032] Length = 153 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + GKR+ + C E ++E LW Sbjct: 1 MKNATFYLLDNDDTVDGLNAVEQLVCDVAAARWRAGKRILIACVDEAQATRIDEALWKRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + + PV + ++ L+ + +VV Sbjct: 61 PDSFVPHNLAGEGPRGGA---PVEIAWPQKRGSSPREL-LISLLPEFAAFATAFYEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + D+ + R +++ + +G+ Sbjct: 117 VP-YDESQKQLARERYKAYRAAGF 139 >gi|238785040|ref|ZP_04629037.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC 43970] gi|238714081|gb|EEQ06096.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC 43970] Length = 149 Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + GKRV + C SE L+E LW Sbjct: 1 MKNATFYLLEHDTPAGELRAHEALACEIAAARWRTGKRVLIACESEEQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + + PV L N+ L+ G + +VV Sbjct: 61 PDQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|284814459|gb|ADB97589.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. pauca] gi|313104560|gb|ADR31657.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. pauca] Length = 126 Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68 + E L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 8 LQQPLELV-CALVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 PVL+ + + R LV D E+V+ ++ D + E R W Sbjct: 67 --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119 Query: 129 RSLKNSG 135 + K G Sbjct: 120 KHYKARG 126 >gi|217972438|ref|YP_002357189.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223] gi|217497573|gb|ACK45766.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223] Length = 167 Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 30/159 (18%) Query: 1 MRTLLFYRFKNDWEYNL------------------------LVLLQDEYEKGKRVSVQCG 36 M +LFY L Q + K + V + C Sbjct: 1 MTQVLFY-LMPPVASTAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQ 59 Query: 37 SERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEA 96 ++ +++E LW ++ F+PH + EG + PV + L AN S + L++ A Sbjct: 60 DKQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLA 115 Query: 97 SMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + ++ +D R +R + G Sbjct: 116 DQAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 153 >gi|315268559|gb|ADT95412.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS678] Length = 167 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 28/158 (17%) Query: 1 MRTLLFYRF-----------KNDWEYN------------LLVLLQDEYEKGKRVSVQCGS 37 M +LFY + L Q + K + V + C Sbjct: 1 MTQVLFYLMPPVASIAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQD 60 Query: 38 ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97 ++ +++E LW ++ F+PH + EG + PV + L AN S + L++ A Sbjct: 61 KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 116 Query: 98 MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + ++ +D R +R + G Sbjct: 117 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 153 >gi|299985537|gb|ADB97593.2| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. pauca] Length = 126 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68 + + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 8 LQQPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 PVL+ + + R LV D E+V+ ++ D + E R W Sbjct: 67 --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119 Query: 129 RSLKNSG 135 + K G Sbjct: 120 KHYKARG 126 >gi|120611820|ref|YP_971498.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1] gi|120590284|gb|ABM33724.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1] Length = 144 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 4/137 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F F + + + + V G V D+++ LW F+ H Sbjct: 1 MTEIAF-HFNAPDKLAYACRFARKAVRSDALLVITGPSAVLDAVDRALWALGPQDFVAH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 DE D PVLL A + + L++ + + ++V ++++ D+ Sbjct: 59 CRQEDEADLREASPVLLATDPRAATHAQV--LLNLGPTVPAGFERFGRLVEVVSSTDESD 116 Query: 121 LEWGRAHWRSLKNSGYA 137 R WR GYA Sbjct: 117 RAGARERWRHYAQRGYA 133 >gi|253991459|ref|YP_003042815.1| DNA polymerase III subunit chi [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782909|emb|CAQ86074.1| dna polymerase iii, chi subunit [Photorhabdus asymbiotica] Length = 158 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M++ FY + D++ GKRV + C ++ + L+E LW + Sbjct: 10 MKSATFYLLEQPSPQADLQAHEWLACQFAADQWRAGKRVLIACEDQQQAEKLDEALWQRE 69 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N+ L++ + +V+ Sbjct: 70 PHQFVPHNLAGEGPRYGA---PVELCWPQKRGNSPR-DILINLLPQFADFATAFHEVIDF 125 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R +++ ++ G+ Sbjct: 126 VPI-DENLKQLARERYKTYRSVGFN 149 >gi|241760416|ref|ZP_04758511.1| DNA polymerase III chi subunit [Neisseria flavescens SK114] gi|241319294|gb|EER55772.1| DNA polymerase III chi subunit [Neisseria flavescens SK114] Length = 146 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G ++ V S L+ LW + F+PH Sbjct: 1 MPKATFYTHVAQPAAFACRLITRAIRDGGQILVWSDSAAAVQQLDVDLWQQIPESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V + S PVLL + N L A +++ I+ + Sbjct: 61 VWL-PTDPMPSETPVLLAFGNALPNIPQDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 L R +R+ + SG+ + Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138 >gi|157826359|ref|YP_001494079.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford] gi|157800317|gb|ABV75571.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford] Length = 154 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y + + ++ LN++LWT+ + F+PHG + QP+ +T Sbjct: 23 EKCYHYDLKSVILTTDADQQEMLNKHLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79 Query: 82 LNANTSTIRFLVDEASMH-----IGDVDYYEKVVFIIN 114 N N +++ ++ ++ V+ +++++ I + Sbjct: 80 QNPNNASVLIIISPTAIEKILQIKDYVEVFKRIIIITD 117 >gi|284814465|gb|ADB97592.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. fastidiosa] gi|284814469|gb|ADB97594.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. fastidiosa] gi|313104566|gb|ADR31660.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. fastidiosa] Length = 126 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68 + + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 8 LEKPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 PVL+ + + R LV D E+V+ ++ D + E R W Sbjct: 67 --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119 Query: 129 RSLKNSG 135 + K G Sbjct: 120 KHYKARG 126 >gi|205360565|ref|ZP_02684454.2| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348910|gb|EDZ35541.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 160 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVD- 128 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 ++ + R +++ + +G+ Sbjct: 129 FAPYEETLKQLARERYKAYRVAGFN 153 >gi|284814453|gb|ADB97586.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. sandyi] Length = 126 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68 K + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 8 LKKPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 PVL+ + + R LV D E+V+ ++ D + E R W Sbjct: 67 --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119 Query: 129 RSLKNSG 135 + K G Sbjct: 120 KHYKARG 126 >gi|242240957|ref|YP_002989138.1| DNA polymerase III subunit chi [Dickeya dadantii Ech703] gi|242133014|gb|ACS87316.1| DNA-directed DNA polymerase [Dickeya dadantii Ech703] Length = 156 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ +FY +D E L + GKRV + C E+ L+E LW + Sbjct: 8 MKNAIFYLLDHDTPSGELNACEALSCDLAAAAWRAGKRVLIACEDEQQALRLDEALWQRE 67 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L+ + +V+ Sbjct: 68 PHTFVPHNLAGEGPRQGA---PVELAWPHKRGNGPRDL-LISLMPQFADFATAFHEVIDF 123 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R +++ ++ G+ Sbjct: 124 VP-YEESLKQLARERYKAYRSVGF 146 >gi|238750165|ref|ZP_04611668.1| DNA polymerase III, chi subunit HolC [Yersinia rohdei ATCC 43380] gi|238711709|gb|EEQ03924.1| DNA polymerase III, chi subunit HolC [Yersinia rohdei ATCC 43380] Length = 149 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + + GKRV + C S+ L+E LW Sbjct: 1 MKNATFYLLEHDTPAGELRAHEALACEVAAERWRAGKRVLIACESQEQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+ L+ + +VV Sbjct: 61 PERFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAAFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|194472838|ref|ZP_03078822.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358606|ref|ZP_02657873.2| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194459202|gb|EDX48041.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332907|gb|EDZ19671.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 160 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C +E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACENEKQAFRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153 >gi|119773928|ref|YP_926668.1| DNA polymerase III, chi subunit [Shewanella amazonensis SB2B] gi|119766428|gb|ABL98998.1| DNA polymerase III, chi subunit [Shewanella amazonensis SB2B] Length = 151 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 10/143 (6%) Query: 1 MRTLLFYRF-----KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M LFY ++ E L Y +G V + C E +++E LW + + Sbjct: 1 MTQALFYVLPPSQMRDAAELLACRLAAFHYRRGAWVYIHCNDESQSFAIDEQLWQFDPND 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 F+PH + + PV + L + L++ A ++ + + Sbjct: 61 FVPHNLKGEGPLGGA---PVEIGHDRLGP-SKNRGILINLAEKVPPFAVHFGHFIDFVAG 116 Query: 116 DDQGSLEWGRAHWRSLKNSGYAP 138 D+ + R +R L+ G P Sbjct: 117 -DEATKALARLRFRELRGLGIEP 138 >gi|238761814|ref|ZP_04622788.1| DNA polymerase III, chi subunit HolC [Yersinia kristensenii ATCC 33638] gi|238699928|gb|EEP92671.1| DNA polymerase III, chi subunit HolC [Yersinia kristensenii ATCC 33638] Length = 149 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + + GKRV + C ++ L+E LW Sbjct: 1 MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACENQEQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+ L+ G + +VV Sbjct: 61 PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|238793059|ref|ZP_04636688.1| DNA polymerase III, chi subunit HolC [Yersinia intermedia ATCC 29909] gi|238727659|gb|EEQ19184.1| DNA polymerase III, chi subunit HolC [Yersinia intermedia ATCC 29909] Length = 149 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + + GKRV + C ++ L+E LW Sbjct: 1 MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACENQEQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+ L+ G + +VV Sbjct: 61 PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|316983815|gb|EFV62795.1| DNA polymerase III chi subunit, HolC family protein [Neisseria meningitidis H44/76] gi|325134629|gb|EGC57269.1| DNA polymerase III, chi subunit [Neisseria meningitidis M13399] gi|325140782|gb|EGC63296.1| DNA polymerase III, chi subunit [Neisseria meningitidis CU385] gi|325205697|gb|ADZ01150.1| DNA polymerase III, chi subunit [Neisseria meningitidis M04-240196] Length = 166 Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 21 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 81 IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 134 -GNSLEELADARERFTAYRRSGFAIE 158 >gi|194097864|ref|YP_002000909.1| HolC [Neisseria gonorrhoeae NCCP11945] gi|254494455|ref|ZP_05107626.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae 1291] gi|291045043|ref|ZP_06570751.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae DGI2] gi|193933154|gb|ACF28978.1| HolC [Neisseria gonorrhoeae NCCP11945] gi|226513495|gb|EEH62840.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae 1291] gi|291011046|gb|EFE03043.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae DGI2] gi|317163634|gb|ADV07175.1| HolC [Neisseria gonorrhoeae TCDC-NG08107] Length = 166 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY + L+ G R+ V S L++ LW ++ + F+PH Sbjct: 21 MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 80 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D AS+ +V+ I+ Sbjct: 81 IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 133 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158 >gi|291616049|ref|YP_003518791.1| HolC [Pantoea ananatis LMG 20103] gi|291151079|gb|ADD75663.1| HolC [Pantoea ananatis LMG 20103] gi|327396300|dbj|BAK13722.1| DNA polymerase III chi subunit HolC [Pantoea ananatis AJ13355] Length = 152 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + D E + L + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYVLETDASSDGLSAVEALVCDLAETRWRAGKRVLIACEDEQQAIRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+ L+ + +V+ Sbjct: 61 ANAFVPHNLAGEGPRYGA---PVELAWPQRRGNSPRDL-LISLLPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEDALKQLARDRYKAYRSVGF 139 >gi|326316901|ref|YP_004234573.1| DNA polymerase III chi subunit HolC [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373737|gb|ADX46006.1| DNA polymerase III chi subunit HolC [Acidovorax avenae subsp. avenae ATCC 19860] Length = 144 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + + + V G V D+++ LW FL H Sbjct: 1 MTEIAFHFNAPDKLAYACRFARKAL-RNDALLVITGPAPVLDAMDRALWALSPQDFLAH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 DE + PVLL + L++ + + + ++V +++ D+G Sbjct: 59 CRQEDEPELREASPVLLAADPRTVARPDV--LLNLGASVPEGFERFARLVEVVSAHDEGD 116 Query: 121 LEWGRAHWRSLKNSGY 136 R WR GY Sbjct: 117 RAGARERWRHYAQRGY 132 >gi|256823040|ref|YP_003147003.1| DNA polymerase III chi subunit HolC [Kangiella koreensis DSM 16069] gi|256796579|gb|ACV27235.1| DNA polymerase III chi subunit HolC [Kangiella koreensis DSM 16069] Length = 142 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 11/142 (7%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQDE----YEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M + F+ ++ E L L+ Y++G++V + E+ +++EYLW + Sbjct: 1 MTQVEFHILESQPGEEAYLRLVGQCVKSLYKQGRKVYIHAHDEKQAHAVDEYLWALDLNE 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 F+PH + PV + + L++ + Y+ K I+ Sbjct: 61 FIPHNMVGEGPAKAP---PVQIGFNQPPEEQHDC--LINLSRDVQPFFSYFLKCYEIVP- 114 Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137 ++ E R ++ + GY Sbjct: 115 NEDEHKESARERYKYYRGHGYP 136 >gi|186476975|ref|YP_001858445.1| DNA polymerase III subunit chi [Burkholderia phymatum STM815] gi|184193434|gb|ACC71399.1| DNA polymerase III chi subunit HolC [Burkholderia phymatum STM815] Length = 138 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D L++ Y+ G+ + V + +E LWT+ F+PH Sbjct: 1 MTRIDFHSNVGDSLLYACRLVRKAYQAGQPLVVLA-EPPRLRAFDEQLWTFSALDFIPHC 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + ++ P++L S A + L++ + +E+++ I+ + Sbjct: 60 LATS---PLAAQTPIVLASSLDEA--PHHQILLNLGATVPPQFARFERLLEIV-GNAPDE 113 Query: 121 LEWG 124 L G Sbjct: 114 LAAG 117 >gi|89094616|ref|ZP_01167553.1| DNA polymerase III chi subunit, HolC [Oceanospirillum sp. MED92] gi|89081086|gb|EAR60321.1| DNA polymerase III chi subunit, HolC [Oceanospirillum sp. MED92] Length = 146 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 59/145 (40%), Gaps = 12/145 (8%) Query: 1 MRT-LLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M + FY + L L++ G ++ +Q E+ +++ LW ++ + Sbjct: 1 MTSKADFYVLPSSDPDARGRFLCRLVEKIGALGHQIYIQTPDEQEAKRIDQLLWEYRPEA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 F+PH + D+ PV + + + ++ D +E+++ ++ Sbjct: 61 FIPHHLLGDDKISS----PVQIGWNEQRPEHKDVYVNLNL--DIPQDALEFERILEVVVQ 114 Query: 116 DDQGSLEWGRAHWRSLKNSGYAPDV 140 + L R ++++ +++G D+ Sbjct: 115 T-EDVLTSTRKNYKTYQSNGIQIDM 138 >gi|37528303|ref|NP_931648.1| DNA polymerase III subunit chi [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787741|emb|CAE16854.1| DNA polymerase III, chi subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 149 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M++ FY + D++ GKRV + C +++ + L+E LW + Sbjct: 1 MKSATFYLLEQPSPQADLQAHEWLACQFAADQWRAGKRVLIACENQQQAEKLDEALWQRE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L++ + +V+ Sbjct: 61 PHQFVPHNLAGEGPRYGA---PVELCWPQKRGNAPR-DILINLLPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R ++S ++ G+ Sbjct: 117 VPI-DENLKQLARERYKSYRSVGFN 140 >gi|294669483|ref|ZP_06734550.1| hypothetical protein NEIELOOT_01381 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308396|gb|EFE49639.1| hypothetical protein NEIELOOT_01381 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 147 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 1/139 (0%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY D L + + +R+ + CGSE L++ LW + FLPH Sbjct: 1 MPRATFYVHITDPAAFACKLTRRACGQNERLLIWCGSEAEMHRLDKELWQDPPESFLPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + +L + + +++ + V I + Sbjct: 61 IWFEGH-PYPQDAAAVLACGNRLPSLPEGTVVLNLTDDFWHTAQPLPQRVLEIVGNSPDE 119 Query: 121 LEWGRAHWRSLKNSGYAPD 139 L R +R+ +++G+ + Sbjct: 120 LAGARERFRAYRDAGFTVE 138 >gi|152978730|ref|YP_001344359.1| DNA polymerase III subunit chi [Actinobacillus succinogenes 130Z] gi|150840453|gb|ABR74424.1| DNA-directed DNA polymerase [Actinobacillus succinogenes 130Z] Length = 147 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 5/127 (3%) Query: 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70 + E L + GKRV + C +E L+E LW D F+PH + + Sbjct: 20 SAVEAQACDLAAQAWRLGKRVLIACETEEQAFRLDEALWQRDADEFVPHNLS---GEITN 76 Query: 71 SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130 P+ ++ N L+ + +V+ + ++ R ++ Sbjct: 77 FATPIEISWRGKR-NAQRRDVLISLQYNVPDFAQSFNRVIDFVPA-EEEQKAQARERYKI 134 Query: 131 LKNSGYA 137 + G+ Sbjct: 135 YRQLGFT 141 >gi|157147737|ref|YP_001455056.1| DNA polymerase III subunit chi [Citrobacter koseri ATCC BAA-895] gi|157084942|gb|ABV14620.1| hypothetical protein CKO_03541 [Citrobacter koseri ATCC BAA-895] Length = 147 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYILDNDTTIDGLSAVEQLVCDIAAERWRSGKRVLIACEDEKQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +V+ Sbjct: 61 PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTGFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140 >gi|300725028|ref|YP_003714354.1| DNA polymerase III subunit chi [Xenorhabdus nematophila ATCC 19061] gi|297631571|emb|CBJ92280.1| DNA polymerase III, chi subunit [Xenorhabdus nematophila ATCC 19061] Length = 159 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 23/155 (14%) Query: 1 MRTLLFYRFKN-DWEYNLLV-----------------LLQDEYEKGKRVSVQCGSERVRD 42 M+ FY + E L L D++ GKRV + C S++ + Sbjct: 1 MKNATFYLLEKLPSEKRLPEQSSFSDDLQPHEWMACQLAADQWRAGKRVLIACESQQQAE 60 Query: 43 SLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGD 102 L+E LW + F+PH + + PV L +N LV Sbjct: 61 KLDEALWQREPSQFVPHNLAGEGPRYGA---PVELCWPQKRSNAPR-DVLVTLLPHFADF 116 Query: 103 VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + +V+ + D+ + R ++S ++ G+ Sbjct: 117 ATAFHEVIDFVPI-DENLKQLARERYKSYRSVGFN 150 >gi|50119361|ref|YP_048528.1| DNA polymerase III subunit chi [Pectobacterium atrosepticum SCRI1043] gi|49609887|emb|CAG73322.1| DNA polymerase III, chi subunit [Pectobacterium atrosepticum SCRI1043] Length = 149 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E L + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIVCEDEQQAIRLDEALWQRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N L+ + +V+ Sbjct: 61 PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEDSLKQLARDRYKTYRSVGF 139 >gi|253686790|ref|YP_003015980.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753368|gb|ACT11444.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 149 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E L + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L+ + +V+ Sbjct: 61 PTAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R +++ ++ G+ Sbjct: 117 VP-YEESLKQLARDRYKTYRSVGF 139 >gi|325132747|gb|EGC55430.1| DNA polymerase III, chi subunit [Neisseria meningitidis M6190] gi|325138632|gb|EGC61191.1| DNA polymerase III, chi subunit [Neisseria meningitidis ES14902] Length = 166 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 21 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 80 Query: 61 VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 81 IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158 >gi|238760358|ref|ZP_04621499.1| DNA polymerase III, chi subunit HolC [Yersinia aldovae ATCC 35236] gi|238701418|gb|EEP93994.1| DNA polymerase III, chi subunit HolC [Yersinia aldovae ATCC 35236] Length = 149 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + + GKRV + C S+ L+E LW Sbjct: 1 MKNATFYLLEHDTPAGELRAHEALACEVAAVHWRAGKRVLIACESQEQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + + PV L N+ L+ G + +VV Sbjct: 61 PDQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139 >gi|262370183|ref|ZP_06063510.1| DNA polymerase III [Acinetobacter johnsonii SH046] gi|262315222|gb|EEY96262.1| DNA polymerase III [Acinetobacter johnsonii SH046] Length = 135 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 14/141 (9%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + + +R+ + ++ L+E LW++ F+ Sbjct: 1 MANISFYLFEQSPERQVESACRLCRKILRQPERIWLYASDPELQQQLDERLWSFDDTSFI 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PHG+D D S Q ++ F + + + ++ II ++ Sbjct: 61 PHGIDQIDARICISAQ------LPEQSDWIVFNF----NDQALEQFEKFSHIIEIIE-NN 109 Query: 118 QGSLEWGRAHWRSLKNSGYAP 138 + + + GR ++ + G Sbjct: 110 ESAKQQGREKFKQYRRLGVEA 130 >gi|239998344|ref|ZP_04718268.1| HolC [Neisseria gonorrhoeae 35/02] gi|240014485|ref|ZP_04721398.1| HolC [Neisseria gonorrhoeae DGI18] gi|240016931|ref|ZP_04723471.1| HolC [Neisseria gonorrhoeae FA6140] gi|240079729|ref|ZP_04724272.1| HolC [Neisseria gonorrhoeae FA19] gi|240116442|ref|ZP_04730504.1| HolC [Neisseria gonorrhoeae PID18] gi|240117146|ref|ZP_04731208.1| HolC [Neisseria gonorrhoeae PID1] gi|240121007|ref|ZP_04733969.1| HolC [Neisseria gonorrhoeae PID24-1] gi|240125096|ref|ZP_04737982.1| HolC [Neisseria gonorrhoeae SK-92-679] gi|260441664|ref|ZP_05795480.1| HolC [Neisseria gonorrhoeae DGI2] gi|268594206|ref|ZP_06128373.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae 35/02] gi|268595875|ref|ZP_06130042.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae FA19] gi|268602114|ref|ZP_06136281.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID18] gi|268602834|ref|ZP_06137001.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID1] gi|268683691|ref|ZP_06150553.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-92-679] gi|268547595|gb|EEZ43013.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae 35/02] gi|268549663|gb|EEZ44682.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae FA19] gi|268586245|gb|EEZ50921.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID18] gi|268586965|gb|EEZ51641.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID1] gi|268623975|gb|EEZ56375.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-92-679] Length = 146 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY + L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D AS+ +V+ I+ Sbjct: 61 IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138 >gi|15677419|ref|NP_274575.1| DNA polymerase III chi subunit [Neisseria meningitidis MC58] gi|7226816|gb|AAF41922.1| putative DNA polymerase holoenzyme chi subunit [Neisseria meningitidis MC58] gi|325199833|gb|ADY95288.1| DNA polymerase III, chi subunit [Neisseria meningitidis H44/76] Length = 146 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 61 IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEELADARERFTAYRRSGFAIE 138 >gi|241765205|ref|ZP_04763189.1| DNA polymerase III chi subunit HolC [Acidovorax delafieldii 2AN] gi|241365134|gb|EER60006.1| DNA polymerase III chi subunit HolC [Acidovorax delafieldii 2AN] Length = 144 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + G RV + ++ ++ LW + F+ H Sbjct: 1 MTEVAFHFNAPDKLAYACRFARKAQRSGVRVVIVASADA-LAQIDGMLWRMQPQDFVAH- 58 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + + PV+L + A L++ +E++V +++ D+ Sbjct: 59 CRADADEELLQHSPVVLAADAREA--PHQELLLNLGDAVPEGFSSFERLVEVVSATDESD 116 Query: 121 LEWGRAHWRSLKNSGY 136 R+ WR + GY Sbjct: 117 RSEARSRWRHYASRGY 132 >gi|315125731|ref|YP_004067734.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913] gi|315014245|gb|ADT67583.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913] Length = 148 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 Y G+RV + SE +S++E +WT+ D F+PH + + PV + + Sbjct: 35 YRLGQRVFIFVDSEETANSIDETIWTFDADSFVPHNLQGEGPKGGA---PVEIGTTPPVG 91 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 N + L++ A+ + + +V + + + + R ++ L+ G Sbjct: 92 NR---KVLINLANHLPDFIRRFNQVFDFVPV-EPVAKQAARERFKKLRQLG 138 >gi|239993536|ref|ZP_04714060.1| DNA polymerase III chi subunit [Alteromonas macleodii ATCC 27126] gi|332142601|ref|YP_004428339.1| DNA polymerase III chi subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327552623|gb|AEA99341.1| DNA polymerase III chi subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 140 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 56/140 (40%), Gaps = 9/140 (6%) Query: 1 MRTLLFYRFKND---WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M ++FY+ + ++ + +++SV C ++ + ++E LW D F+ Sbjct: 1 MPQVIFYQLTSSDNGVAGRASEVIASAFANKQKISVLCDTQAQAEEVDELLWQLPADRFV 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PH + S PV + + + +V+ S + + + + + D Sbjct: 61 PHNLYGEG---PQSGTPVEICWRPEQV--ARRQMVVNVGSGMVPSPNQH-RQIIDFVPVD 114 Query: 118 QGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G Sbjct: 115 ENAKQAARVRYKNYQQAGCN 134 >gi|319637677|ref|ZP_07992443.1| DNA polymerase III chi subunit [Neisseria mucosa C102] gi|317400832|gb|EFV81487.1| DNA polymerase III chi subunit [Neisseria mucosa C102] Length = 146 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 3/140 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY L+ G ++ V S L+ LW + F+PH Sbjct: 1 MPKVTFYTHVARPAAFACRLIARAIRDGGQILVWSDSAAAVQQLDIDLWQQIPESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V + S PVLL + N L A +++ I+ + Sbjct: 61 VWL-PTDLMPSETPVLLAFGNALPNIPKDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 L R +R+ + SG+ + Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138 >gi|299530040|ref|ZP_07043467.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni S44] gi|298722020|gb|EFI62950.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni S44] Length = 156 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 4/136 (2%) Query: 2 RTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 + F+ D + + G R+ V G L+ LW+ FL H Sbjct: 15 TEIAFHFNAPDKLGYVCRFARKALRHGARIVVL-GDGAALSRLSPRLWSVSATDFLAHAC 73 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + ++ PV+L + + LV+ + + +VV I+++ D+ Sbjct: 74 ESDGARMLAAS-PVIL--AEHLQDLPHYDVLVNLTPQVPSGFERFARVVEIVSSGDEMDR 130 Query: 122 EWGRAHWRSLKNSGYA 137 + RA WR G++ Sbjct: 131 QDARARWRDYAARGFS 146 >gi|284814455|gb|ADB97587.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. multiplex] gi|284814457|gb|ADB97588.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. multiplex] gi|284814461|gb|ADB97590.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. multiplex] Length = 126 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68 + + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 8 LEKPL-QLVCELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 PVL+ + + R LV D E+V+ ++ D + E R W Sbjct: 67 --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119 Query: 129 RSLKNSG 135 + K G Sbjct: 120 KHYKTRG 126 >gi|237746981|ref|ZP_04577461.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS] gi|229378332|gb|EEO28423.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS] Length = 141 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 5/108 (4%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 R+ + + + L++ LWT+ FLPH + +S PVLLT Sbjct: 32 RIVILSSDRNLLNRLDDALWTFSDSDFLPHAMLGDR---LASRSPVLLTYDDQCE-MPHH 87 Query: 90 RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + LV+ + +++++ +++T + E GR + + GYA Sbjct: 88 QILVNLSPAIPACYARFDRLIELVST-ETADTEAGRQRYVHYRERGYA 134 >gi|225075093|ref|ZP_03718292.1| hypothetical protein NEIFLAOT_00092 [Neisseria flavescens NRL30031/H210] gi|224953577|gb|EEG34786.1| hypothetical protein NEIFLAOT_00092 [Neisseria flavescens NRL30031/H210] Length = 146 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G ++ V S L+ LW + F+PH Sbjct: 1 MPKATFYTHVAQQAAFACRLIARAIRDGGQILVWSDSAAAVQQLDIDLWQQIPESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V + S PVLL + N L A +++ I+ + Sbjct: 61 VWL-PTDPMPSETPVLLAFGNALPNIPQDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 L R +R+ + SG+ + Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138 >gi|121635225|ref|YP_975470.1| DNA polymerase III chi subunit [Neisseria meningitidis FAM18] gi|120866931|emb|CAM10691.1| DNA polymerase III chi subunit [Neisseria meningitidis FAM18] gi|254672905|emb|CBA07228.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha275] gi|261392200|emb|CAX49714.1| putative DNA polymerase III chi subunit [Neisseria meningitidis 8013] gi|319410785|emb|CBY91170.1| putative DNA polymerase III chi subunit [Neisseria meningitidis WUE 2594] Length = 146 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 61 IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138 >gi|156935582|ref|YP_001439498.1| DNA polymerase III subunit chi [Cronobacter sakazakii ATCC BAA-894] gi|156935600|ref|YP_001439516.1| DNA polymerase III subunit chi [Cronobacter sakazakii ATCC BAA-894] gi|156533836|gb|ABU78662.1| hypothetical protein ESA_03446 [Cronobacter sakazakii ATCC BAA-894] gi|156533854|gb|ABU78680.1| hypothetical protein ESA_03465 [Cronobacter sakazakii ATCC BAA-894] Length = 153 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + GKR+ + C E ++E LW Sbjct: 1 MKNATFYLLDNDDTADGLSAVEQLVCDVAAARWRAGKRILIACVDEAQATRIDEALWKRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV + ++ L+ + +VV Sbjct: 61 PGSFVPHNLAGEGPRGGA---PVEIAWPQKRGSSPREL-LISLLPEFAAFATAFYEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + D+ + R +++ + +G+ Sbjct: 117 VP-YDESQKQLARERYKAYRAAGF 139 >gi|205355208|ref|YP_002229009.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274989|emb|CAR40063.1| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326630366|gb|EGE36709.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 147 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIASEDEKQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140 >gi|254362288|ref|ZP_04978401.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica PHL213] gi|261492797|ref|ZP_05989344.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|153093865|gb|EDN74797.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica PHL213] gi|261311479|gb|EEY12635.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 145 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 12/148 (8%) Query: 1 MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY + E L + GKRV + C +E+ +++E LW Sbjct: 1 MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + + P+ ++ N L+ + + + +++ + Sbjct: 61 DSFVPHNLSGEITTYPT---PIEISWKGKR-NAQRRDLLISLQTQLPEFIGSFTQIIDFV 116 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 ++ + R ++ + G+ + I Sbjct: 117 PV-EETAKAQARDRYKQYRQLGWQLETI 143 >gi|78486090|ref|YP_392015.1| DNA polymerase III chi subunit, HolC [Thiomicrospira crunogena XCL-2] gi|78364376|gb|ABB42341.1| DNA polymerase III, chi subunit [Thiomicrospira crunogena XCL-2] Length = 146 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 13/142 (9%) Query: 3 TLLFYRFKNDW----EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58 ++FY D E + L+ + + +R ++ SE + LW ++ + F+P Sbjct: 10 DVIFYVLGTDTAQQREAFMAKLVNKIHREKRRCDIRFASEDEMTRFDLSLWQYQPEAFIP 69 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 H V + P+ L + + V + Y + + +++ + Sbjct: 70 HSVQQTVQA------PIQLWADQIATPCQDVLLNVH--PDFPQNFQLYNRTIEVLDQT-E 120 Query: 119 GSLEWGRAHWRSLKNSGYAPDV 140 ++ GR W++ K G P V Sbjct: 121 HLIQMGRERWKAYKKEGLEPTV 142 >gi|227327169|ref|ZP_03831193.1| DNA polymerase III subunit chi [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 149 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E L + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N L+ + +V+ Sbjct: 61 PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R +++ ++ G+ Sbjct: 117 VP-YEESLKQLARDRYKTYRSVGF 139 >gi|289811597|ref|ZP_06542226.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 142 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 13/140 (9%) Query: 6 FYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 FY ND E + + + + GKRV + C E+ L+E LW + F+ Sbjct: 1 FYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARPAESFV 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PH + + PV + N+S L+ + + +VV + + Sbjct: 61 PHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDFVP-YE 115 Query: 118 QGSLEWGRAHWRSLKNSGYA 137 + + R +++ + +G+ Sbjct: 116 ETLKQLARERYKAYRVAGFN 135 >gi|212709903|ref|ZP_03318031.1| hypothetical protein PROVALCAL_00953 [Providencia alcalifaciens DSM 30120] gi|212687415|gb|EEB46943.1| hypothetical protein PROVALCAL_00953 [Providencia alcalifaciens DSM 30120] Length = 162 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + L + GKR+ + C +++ + ++E LW Sbjct: 14 MKKGTFYLLEQPSPQAEYEAHEWLACELAAQAWRNGKRILIACENQQQAEKMDEALWQRD 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + P+ + + NT L++ S + +V+ Sbjct: 74 PHQFVPHNLAGEGPRYGA---PIEICWPNKRGNTPR-DILINLQSQFADFATAFHEVIDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R +++ ++ G+ Sbjct: 130 VPI-DETLKQLARDRYKTYRSVGFN 153 >gi|313668053|ref|YP_004048337.1| DNA polymerase III chi subunit [Neisseria lactamica ST-640] gi|309378514|emb|CBX22867.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005515|emb|CBN86951.1| DNA polymerase III chi subunit [Neisseria lactamica 020-06] Length = 146 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY L+ G RV V S L++ LW ++ + F+PH Sbjct: 1 MPKVTFYTHVAQIPLFTCRLIARAIRDGGRVLVWSDSFGQVQELDKALWRYEAESFVPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS---TIRFLVD---EASMHIGDVDYYEKVVFIIN 114 + + PVLL + T+ L D A+ + E+++ I+ Sbjct: 61 I-WEAGCPMPADTPVLLAAGDRIPEIAADMTVLNLSDDFWNAAPVLP-----ERILEIVG 114 Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136 L R + + + SG+ Sbjct: 115 G-SLEELAEARGRFAAYRKSGF 135 >gi|238755184|ref|ZP_04616530.1| DNA polymerase III, chi subunit HolC [Yersinia ruckeri ATCC 29473] gi|238706631|gb|EEP99002.1| DNA polymerase III, chi subunit HolC [Yersinia ruckeri ATCC 29473] Length = 149 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY +D E L + + GKRV + C S L+E LW Sbjct: 1 MKNATFYLLDHDQSSGELRAHEALACDLAAERWRAGKRVLIACESREQAQRLDEALWQRA 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N+ L+ G + +V+ Sbjct: 61 PEQFVPHNLAGEGPKYGA---PVELAWPEKRGNSPRDL-LISLLPEFAGFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R ++S ++ G+ Sbjct: 117 VP-YEETLKQLARDRYKSYRSVGF 139 >gi|325198678|gb|ADY94134.1| DNA polymerase III, chi subunit [Neisseria meningitidis G2136] Length = 146 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 61 IWEMEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138 >gi|304387023|ref|ZP_07369278.1| DNA-directed DNA polymerase III chi subunit [Neisseria meningitidis ATCC 13091] gi|304338895|gb|EFM04994.1| DNA-directed DNA polymerase III chi subunit [Neisseria meningitidis ATCC 13091] gi|325128633|gb|EGC51502.1| DNA polymerase III, chi subunit [Neisseria meningitidis N1568] Length = 166 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 21 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 81 IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158 >gi|268599769|ref|ZP_06133936.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae MS11] gi|268583900|gb|EEZ48576.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae MS11] Length = 166 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY + L+ G R+ V S L++ LW ++ + F+PH Sbjct: 21 MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 80 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D AS+ +V+ I+ Sbjct: 81 IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 133 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 134 -GNGLEDLADARERFTAYRRSGFAIE 158 >gi|254805323|ref|YP_003083544.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha14] gi|254668865|emb|CBA06961.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha14] Length = 146 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCCLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 61 IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138 >gi|261401004|ref|ZP_05987129.1| DNA polymerase III, chi subunit [Neisseria lactamica ATCC 23970] gi|269209122|gb|EEZ75577.1| DNA polymerase III, chi subunit [Neisseria lactamica ATCC 23970] Length = 146 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY L+ G RV V S L++ LW ++ + F+PH Sbjct: 1 MPKVTFYTHVGQIPLFTCRLIARAIRDGGRVLVWSDSFGQVQELDKALWRYEAESFVPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTS---TIRFLVD---EASMHIGDVDYYEKVVFIIN 114 + + PVLL + T+ L D A+ + E+++ I+ Sbjct: 61 I-WEAGCPMPADTPVLLAAGDRIPEIAADMTVLNLSDDFWNAAPVLP-----ERILEIVG 114 Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136 L R + + + SG+ Sbjct: 115 G-SLEELAEARGRFAAYRKSGF 135 >gi|239815709|ref|YP_002944619.1| DNA polymerase III subunit chi [Variovorax paradoxus S110] gi|239802286|gb|ACS19353.1| DNA polymerase III subunit chi [Variovorax paradoxus S110] Length = 147 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 5/139 (3%) Query: 1 MRTLLFYRFKNDWEYN-LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F F + N L++ V G ++ ++++ LW F+ H Sbjct: 1 MTEIGF-HFNLPDKANYACRLVRKAVSVRGLRVVVVGEPQMLEAVDAALWQLSPCDFIAH 59 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 + + PV+L +A + LV+ + +E++V I+ +++ Sbjct: 60 -CRGDAQPHLVARSPVILCAEGADAAGLAHREMLVNLGPTVPVGFERFERLVDIV-SNET 117 Query: 119 GSLEWGRAHWRSLKNSGYA 137 + GR+ WR + GY+ Sbjct: 118 DDRQIGRSRWRHYADRGYS 136 >gi|282600031|ref|ZP_05972768.2| DNA polymerase III subunit chi [Providencia rustigianii DSM 4541] gi|282566812|gb|EFB72347.1| DNA polymerase III subunit chi [Providencia rustigianii DSM 4541] Length = 168 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY+ + L + GKRV + C +++ + ++E LW Sbjct: 20 MKKGTFYQLQQPSPQAEYEAHEWLACELAAQMWRNGKRVLIACETQQQAEKIDEALWQRD 79 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + P+ + + NT L++ S + +VV Sbjct: 80 PHQFVPHNLAGEGPRYGA---PIEICWPNKRGNTPR-DILINLQSQFADFATAFHEVVDF 135 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R ++ ++ G+ Sbjct: 136 VPI-DETLKQLARERYKIYRSVGFN 159 >gi|59801585|ref|YP_208297.1| HolC [Neisseria gonorrhoeae FA 1090] gi|293399671|ref|ZP_06643823.1| HolC protein [Neisseria gonorrhoeae F62] gi|59718480|gb|AAW89885.1| putative DNA polymerase III chi subunit [Neisseria gonorrhoeae FA 1090] gi|291609922|gb|EFF39045.1| HolC protein [Neisseria gonorrhoeae F62] Length = 146 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY + L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D AS+ +V+ I+ Sbjct: 61 IWETEEA-MPSDTSVLLACDGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138 >gi|254523696|ref|ZP_05135751.1| DNA polymerase III holoenzyme chi subunit [Stenotrophomonas sp. SKA14] gi|219721287|gb|EED39812.1| DNA polymerase III holoenzyme chi subunit [Stenotrophomonas sp. SKA14] Length = 141 Score = 74.4 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L + + G V + + L+E LW + D Sbjct: 1 MPRADFYLIAKPRFLTEPLRLVCELARKANDAGLFTLVLARDQAQAEELDELLWAFDDDA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 ++PH + D + + VL+ + + + L D+ + E+V+ ++ Sbjct: 61 YIPHQIAGEDMDEEEAL--VLIAVPGTEAPARPLVINLRDD-----PWLGQCERVLEVVP 113 Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136 D + E R WR K +GY Sbjct: 114 A-DPEAREPLRERWRQYKAAGY 134 >gi|227114627|ref|ZP_03828283.1| DNA polymerase III subunit chi [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 149 Score = 74.4 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E L + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N L+ + +V+ Sbjct: 61 PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEDSLKQLARDRYKTYRSVGF 139 >gi|190572725|ref|YP_001970570.1| DNA polymerase III subunit chi [Stenotrophomonas maltophilia K279a] gi|190010647|emb|CAQ44256.1| putative DNA polymerase [Stenotrophomonas maltophilia K279a] Length = 141 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L + + G V + + L+E LW + D Sbjct: 1 MPRADFYLIAKPRFLTEPLRLVCELARKANDAGLFTLVLARDQAQAEELDELLWAFDNDA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + D + + VL+ + + R LV + E+V+ ++ Sbjct: 61 YIPHQIAGEDMDEEEAL--VLIAVPGT---DAPARPLVINLRDEP-WLGQCERVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137 D + E R WR K +GY Sbjct: 115 -DPEAREPLRERWRQYKAAGYE 135 >gi|161505036|ref|YP_001572148.1| DNA polymerase III subunit chi [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866383|gb|ABX23006.1| hypothetical protein SARI_03167 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 147 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYILDNDTAVDGLSAVEQLVCDIAAERWRSGKRVLIACEDEQQAIRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTNFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140 >gi|157804263|ref|YP_001492812.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel] gi|157785526|gb|ABV74027.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel] Length = 154 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 45/97 (46%), Gaps = 8/97 (8%) Query: 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTIS 80 ++ Y + + + ++ LN+ LWT+ + F+PHG + QP+ +T Sbjct: 22 IEKCYYSDLKSVILTTDKEQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDE 78 Query: 81 SLNANTSTIRFLV----DEASMHIGD-VDYYEKVVFI 112 N N +++ ++ + + D ++ +++++ I Sbjct: 79 LQNPNNASVLIIISPIDIGKILQVKDYIEVFKRIIII 115 >gi|284814451|gb|ADB97585.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. fastidiosa] gi|313104562|gb|ADR31658.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. fastidiosa] gi|313104564|gb|ADR31659.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa subsp. fastidiosa] Length = 126 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68 + + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 8 LEKPL-QLVCELVRKAYDTHQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 PVL+ + + R LV D E+V+ ++ D + E R W Sbjct: 67 --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119 Query: 129 RSLKNSG 135 + K G Sbjct: 120 KHYKARG 126 >gi|283834894|ref|ZP_06354635.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220] gi|291069153|gb|EFE07262.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220] Length = 147 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C +E+ L+E LW Sbjct: 1 MKNATFYLLDNDTQQDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDLLISLRVGFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQSARDRYKAYRVAGFN 140 >gi|71280374|ref|YP_267489.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H] gi|71146114|gb|AAZ26587.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H] Length = 157 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 40/160 (25%) Query: 2 RTLLFYRFKNDW-----EYNLLVLLQDEYEKGK------RVSVQCGSERVRDSLNEYLWT 50 ++FY K+D E + + RV + ++ + ++E LW Sbjct: 4 TQVMFYLLKDDVTDEKEEDTRSAIYHACLQASHFYRQNQRVYIYAKDQQHAEQIDEMLWA 63 Query: 51 WKKDGFLPHGVDVGDE----------GDFSSFQPVLLTISSLNANTS-TIRFLVDEASMH 99 + D F+PH + +PVL+ ++S N + +F+VD Sbjct: 64 FDSDSFVPHNLVGEGPKQGAMVEIGYQAPQGRRPVLINLNSAVPNFANQFQFIVD----- 118 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 D+ + R +++ + G+ D Sbjct: 119 -------------FVPSDETLKQQARERFKTCRQWGFQVD 145 >gi|255066308|ref|ZP_05318163.1| DNA polymerase III, chi subunit [Neisseria sicca ATCC 29256] gi|255049518|gb|EET44982.1| DNA polymerase III, chi subunit [Neisseria sicca ATCC 29256] Length = 146 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY D L+ G ++ V S+ L+ LW + F+PH Sbjct: 1 MPKATFYTHAADPAAFACRLIARAIRDGGQILVWSDSDETIRRLDRDLWQQIPESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLT---ISSLNANTSTIRFLV----DEASMHIGDVDYYEKVVFII 113 + SS PV L +T+ L +EA + +V+ I+ Sbjct: 61 I-WQPGQPMSSETPVWLAFGDTLPTTPENATVLNLSPDFWNEAPVVPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 L R + + + +G+ + Sbjct: 114 -GSSLEELADARERFSAYRKNGFTIE 138 >gi|329894350|ref|ZP_08270220.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC3088] gi|328923146|gb|EGG30469.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC3088] Length = 145 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 12/143 (8%) Query: 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY ++D VL + +G R+ V E L + W+++ D F Sbjct: 1 MTRVGFYVVQSDDTLASHRVAAVLAEKALNRGHRIFVLARDESHAQELYDIFWSFRHDAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 LP V + E S+ +++ S+ L++ + ++++V I+ T Sbjct: 61 LP--VSLWHERATSA---IVIGHSNPTPEHHDC--LINLSMTTDNFASRFQRIVEIV-TQ 112 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 LE R WR K+ G+A + Sbjct: 113 QAHHLEAMRDAWRWYKHRGFALE 135 >gi|325144872|gb|EGC67160.1| DNA polymerase III, chi subunit [Neisseria meningitidis M01-240013] Length = 166 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 21 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 81 IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 134 -GNSLEELADSRERFTAYRRSGFAIE 158 >gi|33151849|ref|NP_873202.1| DNA polymerase III subunit chi [Haemophilus ducreyi 35000HP] gi|33148070|gb|AAP95591.1| DNA polymerase III chi subunit [Haemophilus ducreyi 35000HP] Length = 153 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 12/140 (8%) Query: 3 TLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 + FY + E L + GKRV + C +E+ +++E LW + D Sbjct: 11 QVKFYLLSQLGSDDLSAAEAMACELAAQAWRSGKRVLIACETEQQALNIDEALWAREPDS 70 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 F+PH + P+ + + N FL+ + ++ + +++ + Sbjct: 71 FVPHNLAGEF---TQYATPIEICWQNKR-NAQRRDFLISLQTNLPDYINTFTQIIDFVPI 126 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D+ R ++ + G Sbjct: 127 -DEKEKVHARERYKQYRQLG 145 >gi|330448739|ref|ZP_08312386.1| DNA polymerase III chi subunit, HolC family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492930|dbj|GAA06883.1| DNA polymerase III chi subunit, HolC family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 150 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 13/143 (9%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY + E L Y +G +V + +++ + ++EYLW Sbjct: 1 MTHATFYIIDDKQESADTDFQCHFACHLAAMSYRQGNKVYLLAANKQQAEQIDEYLWQQD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + S PV + ++L +T L++ A + +VV Sbjct: 61 PDSFVPHNLVGEGPNGGS---PVEIGWATLR-HTGHRATLINLAETAPNFAVTFAQVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135 + D+ + R +++ + +G Sbjct: 117 VPC-DEKLKQLARERYKAYRLAG 138 >gi|261379721|ref|ZP_05984294.1| DNA polymerase III, chi subunit [Neisseria subflava NJ9703] gi|284797397|gb|EFC52744.1| DNA polymerase III, chi subunit [Neisseria subflava NJ9703] Length = 146 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G ++ V S L+ W + F+PH Sbjct: 1 MPKATFYTHVARPAAFACRLIARAIRDGGQILVWSDSAAAVQQLDVDFWQQIPESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNAN-TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 V + S PVLL + N + L A +++ I+ + Sbjct: 61 VWL-PTDPMPSETPVLLAFGNALPNISQDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 L R +R+ + SG+ + Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138 >gi|194437758|ref|ZP_03069853.1| DNA polymerase III, chi subunit [Escherichia coli 101-1] gi|256025195|ref|ZP_05439060.1| DNA polymerase III subunit chi [Escherichia sp. 4_1_40B] gi|260858411|ref|YP_003232302.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str. 11368] gi|301329235|ref|ZP_07222216.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1] gi|194423254|gb|EDX39246.1| DNA polymerase III, chi subunit [Escherichia coli 101-1] gi|257757060|dbj|BAI28562.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str. 11368] gi|300844443|gb|EFK72203.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1] gi|323157533|gb|EFZ43642.1| DNA polymerase III subunit chi [Escherichia coli EPECa14] gi|323970487|gb|EGB65746.1| DNA polymerase III chi subunit protein [Escherichia coli TA007] Length = 147 Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTCFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|183600428|ref|ZP_02961921.1| hypothetical protein PROSTU_03999 [Providencia stuartii ATCC 25827] gi|188020224|gb|EDU58264.1| hypothetical protein PROSTU_03999 [Providencia stuartii ATCC 25827] Length = 149 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + L + GKRV V C + + L+E LW Sbjct: 1 MKNATFYLLEQPSPQVELEAHEWLACELAAQMWRDGKRVLVACETAEQAEKLDESLWQRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + P+ + N + L++ S + +V+ Sbjct: 61 PHQFVPHNLAGEGPRYGA---PIEICWPGKRGN-AQRDILINLQSQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R ++ ++ G+ Sbjct: 117 VPI-DETLKQLARERYKIYRSVGFN 140 >gi|212633774|ref|YP_002310299.1| DNA polymerase III subunit chi, HolC [Shewanella piezotolerans WP3] gi|212555258|gb|ACJ27712.1| DNA polymerase III chi subunit, HolC [Shewanella piezotolerans WP3] Length = 157 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 21/152 (13%) Query: 1 MRTLLFYRFK--NDWEYNLLVLL---------QDEYEKG----KRVSVQCGSERVRDSLN 45 M LFY + + +L + + V + C + +++ Sbjct: 1 MSQTLFYLMPNGKSTQRHEPLLALQQVYDFACELARQAFINQQW-VYIHCTDKEQAYAID 59 Query: 46 EYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDY 105 E LW F+PH + + PV + L AN + L++ A Sbjct: 60 ELLWQLAPQSFVPHNLKGEGPTGGA---PVEIGFDRLGANKNRH-VLINLADQVPQFAVN 115 Query: 106 YEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + +++ +D R +R + G A Sbjct: 116 FVQIID-FVANDDSHKAIARDRYRQYRTLGIA 146 >gi|325130633|gb|EGC53376.1| DNA polymerase III, chi subunit [Neisseria meningitidis OX99.30304] gi|325136765|gb|EGC59365.1| DNA polymerase III, chi subunit [Neisseria meningitidis M0579] gi|325208500|gb|ADZ03952.1| DNA polymerase III, chi subunit [Neisseria meningitidis NZ-05/33] Length = 166 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 21 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80 Query: 61 VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 81 IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158 >gi|320184515|gb|EFW59317.1| DNA polymerase III chi subunit [Shigella flexneri CDC 796-83] Length = 147 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSTVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|218768536|ref|YP_002343048.1| DNA polymerase III chi subunit [Neisseria meningitidis Z2491] gi|121052544|emb|CAM08884.1| DNA polymerase III chi subunit [Neisseria meningitidis Z2491] Length = 146 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D A + +V+ I+ Sbjct: 61 IWETEEA-MPSEPSVLLACGGNLPRIPEGMAVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEELADARERFTAYRRSGFAIE 138 >gi|148826880|ref|YP_001291633.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG] gi|148718122|gb|ABQ99249.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG] Length = 144 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L+ + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLVASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDMLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|283786941|ref|YP_003366806.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168] gi|282950395|emb|CBG90043.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168] Length = 147 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 MR FY ND E + + + + GKRV + C +E+ L+E LW Sbjct: 1 MRNATFYLLDNDNTADGLSAVEQLVCEIAAERWRSGKRVLIACENEQQALRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDLLISLRVGFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQSARERYKAYRVAGFN 140 >gi|254669823|emb|CBA04186.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha153] Length = 146 Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 61 IWETEEA-MPSETSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138 >gi|281603542|gb|ADA76526.1| DNA polymerase III, chi subunit [Shigella flexneri 2002017] Length = 160 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGSA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153 >gi|240113701|ref|ZP_04728191.1| HolC [Neisseria gonorrhoeae MS11] gi|240122362|ref|ZP_04735318.1| HolC [Neisseria gonorrhoeae PID332] gi|240127077|ref|ZP_04739738.1| HolC [Neisseria gonorrhoeae SK-93-1035] gi|268680949|ref|ZP_06147811.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID332] gi|268685432|ref|ZP_06152294.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-93-1035] gi|268621233|gb|EEZ53633.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID332] gi|268625716|gb|EEZ58116.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-93-1035] Length = 146 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY + L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D AS+ +V+ I+ Sbjct: 61 IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNGLEDLADARERFTAYRRSGFAIE 138 >gi|261377634|ref|ZP_05982207.1| DNA polymerase III, chi subunit [Neisseria cinerea ATCC 14685] gi|269146389|gb|EEZ72807.1| DNA polymerase III, chi subunit [Neisseria cinerea ATCC 14685] Length = 146 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 3/137 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY + L+ G RV V S L++ LW ++ + F+PH Sbjct: 1 MPKVTFYTHVDQIPLFTCRLIVRAIRDGGRVLVWSDSFGQVQELDKTLWQYEAESFVPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY-EKVVFIINTDDQG 119 V E + PVLL + +++ + E+++ I+ Sbjct: 61 VWTT-EYPMPTDMPVLLAAGERIPEIAENMTVLNLSDDFWNAAPVLPERILEIV-GSSLE 118 Query: 120 SLEWGRAHWRSLKNSGY 136 L R + + + SG+ Sbjct: 119 ELAEARGRFAAYRKSGF 135 >gi|251792953|ref|YP_003007679.1| DNA polymerase III subunit chi [Aggregatibacter aphrophilus NJ8700] gi|247534346|gb|ACS97592.1| DNA polymerase III subunit chi [Aggregatibacter aphrophilus NJ8700] Length = 148 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 14/141 (9%) Query: 6 FYRFKND---------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 FY + E L + GKRV + C SE ++E LW + D F Sbjct: 7 FYLLTDTSPARPNLSAMESLACDLATSAWRLGKRVLLVCESEAQALKIDEALWQREPDEF 66 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + P+ ++ + N + L++ ++ + +++ + + Sbjct: 67 VPHNLS---GEPTTYATPIEISWTGKR-NAQSRDLLINLQPQLPEYINSFNQIIDFVPVE 122 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 +Q R ++ L+ G+A Sbjct: 123 EQPK-ALARERYKQLRQLGWA 142 >gi|271498966|ref|YP_003331991.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586] gi|270342521|gb|ACZ75286.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586] Length = 149 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E L + G+RV + C E+ L+E LW + Sbjct: 1 MKNATFYLIESDRSSGELNACEVLACELAAARWRAGQRVLIACEDEQQALRLDEALWQRE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + S PV L N L+ + +V+ Sbjct: 61 PHAFVPHNLAGEGPRQGS---PVELAWPQKRGNAPRDL-LISLMPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + D+ + R +++ ++ G+ Sbjct: 117 VP-YDESLKQLARDRYKAYRSVGF 139 >gi|300718543|ref|YP_003743346.1| DNA polymerase III, chi subunit [Erwinia billingiae Eb661] gi|299064379|emb|CAX61499.1| DNA polymerase III, chi subunit [Erwinia billingiae Eb661] Length = 152 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + D E + + + + +GKRV V C E L+E LW Sbjct: 1 MKNATFYLLETDTPVDGISALEALVCDIAEARWREGKRVLVACEDEAQAIRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N+ L+ + +VV Sbjct: 61 ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNSPRDL-LISLLPHFADFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R +++ ++ G+ Sbjct: 117 VP-YEESLKQLARDRYKAYRSVGF 139 >gi|67459767|ref|YP_247391.1| DNA polymerase III subunit chi [Rickettsia felis URRWXCal2] gi|67005300|gb|AAY62226.1| unknown [Rickettsia felis URRWXCal2] Length = 154 Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y + + ++ LN+ LWT+ + F+PHG + QP+ +T Sbjct: 23 EKCYRSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79 Query: 82 LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114 N N +++ ++ + + +++++ I + Sbjct: 80 QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 117 >gi|226951737|ref|ZP_03822201.1| DNA polymerase III, chi subunit [Acinetobacter sp. ATCC 27244] gi|226837527|gb|EEH69910.1| DNA polymerase III, chi subunit [Acinetobacter sp. ATCC 27244] Length = 135 Score = 73.6 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 62/141 (43%), Gaps = 14/141 (9%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + + ++ C +++ L++ LW++ + F+ Sbjct: 1 MTQVSFYLFEKSTERQVESACRLCRKILNQHPQIWWYCTDSEIQNELDDKLWSFDPNSFI 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PHGV+ S PV ++ +N + + A + + + ++ II ++ Sbjct: 61 PHGVN-------QSHSPVCISEHLPPSNDWIVFNFNNHA---LEQIQDFRHIIEIIE-NN 109 Query: 118 QGSLEWGRAHWRSLKNSGYAP 138 + + + GR +++ + G P Sbjct: 110 ETAKQLGREKFKTYRRLGIEP 130 >gi|261819784|ref|YP_003257890.1| DNA polymerase III subunit chi [Pectobacterium wasabiae WPP163] gi|261603797|gb|ACX86283.1| DNA-directed DNA polymerase [Pectobacterium wasabiae WPP163] Length = 149 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E L + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLEHDSKSGELSAHEVLACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N L+ + +V+ Sbjct: 61 PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R +++ ++ G+ Sbjct: 117 VP-YEESLKQLARDRYKTYRSVGF 139 >gi|170683022|ref|YP_001746662.1| DNA polymerase III subunit chi [Escherichia coli SMS-3-5] gi|293407979|ref|ZP_06651819.1| DNA polymerase III subunit chi [Escherichia coli B354] gi|300935930|ref|ZP_07150884.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1] gi|301024408|ref|ZP_07188094.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1] gi|331665928|ref|ZP_08366822.1| DNA polymerase III subunit chi [Escherichia coli TA143] gi|331671400|ref|ZP_08372198.1| DNA polymerase III subunit chi [Escherichia coli TA280] gi|331681279|ref|ZP_08381916.1| DNA polymerase III subunit chi [Escherichia coli H299] gi|170520740|gb|ACB18918.1| DNA polymerase III, chi subunit [Escherichia coli SMS-3-5] gi|291472230|gb|EFF14712.1| DNA polymerase III subunit chi [Escherichia coli B354] gi|300396603|gb|EFJ80141.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1] gi|300458898|gb|EFK22391.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1] gi|331056979|gb|EGI28973.1| DNA polymerase III subunit chi [Escherichia coli TA143] gi|331071245|gb|EGI42602.1| DNA polymerase III subunit chi [Escherichia coli TA280] gi|331081500|gb|EGI52661.1| DNA polymerase III subunit chi [Escherichia coli H299] Length = 160 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153 >gi|127511857|ref|YP_001093054.1| DNA polymerase III chi subunit, HolC [Shewanella loihica PV-4] gi|126637152|gb|ABO22795.1| DNA polymerase III chi subunit, HolC [Shewanella loihica PV-4] Length = 153 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 21/150 (14%) Query: 1 MRTLLFYRFKNDWEYN--------------LLVLLQDEYEKGKR-VSVQCGSERVRDSLN 45 M LFY L + Y +G++ V + C ++ ++ Sbjct: 1 MPNALFYLMPQASSAATNVAKAEQESVYLFACRLAEQAY-RGQQLVYIHCNDQQQAYEVD 59 Query: 46 EYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDY 105 E LW ++ F+PH + + PV + L N + L++ A Sbjct: 60 EILWQFEPSAFVPHNLKGEGPTGGA---PVEIGFDKLGPNKNRHL-LINLADQAPQFAVN 115 Query: 106 YEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + +++ +D R +R + G Sbjct: 116 FGQIID-FVANDAAMKATARDRYRQYRELG 144 >gi|30065454|ref|NP_839625.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T] gi|56480552|ref|NP_709942.2| DNA polymerase III subunit chi [Shigella flexneri 2a str. 301] gi|30043718|gb|AAP19437.1| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 2457T] gi|56384103|gb|AAN45649.2| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 301] gi|313646459|gb|EFS10921.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T] gi|332748944|gb|EGJ79367.1| DNA polymerase III subunit chi [Shigella flexneri K-671] gi|332749219|gb|EGJ79640.1| DNA polymerase III subunit chi [Shigella flexneri 4343-70] gi|332749835|gb|EGJ80248.1| DNA polymerase III subunit chi [Shigella flexneri 2747-71] gi|332763117|gb|EGJ93360.1| DNA polymerase III chi subunit, HolC family protein [Shigella flexneri 2930-71] gi|333009110|gb|EGK28566.1| DNA polymerase III subunit chi [Shigella flexneri K-218] gi|333011947|gb|EGK31332.1| DNA polymerase III subunit chi [Shigella flexneri K-304] Length = 147 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGSA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|209694118|ref|YP_002262046.1| DNA polymerase III subunit chi [Aliivibrio salmonicida LFI1238] gi|208008069|emb|CAQ78210.1| DNA polymerase III, chi subunit [Aliivibrio salmonicida LFI1238] Length = 147 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M LFY ++ + L Y + RV + + ++E LW Sbjct: 1 MSQALFYVLESTSPAATQPGLLKFVCQLAHYYYSQNARVYILSDDKEQALLIDELLWQND 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + S P+ + +L + L++ A + +VV Sbjct: 61 VSEFIPHNLIGEG---PKSGSPIEIGWGTLRPSGRRH-VLINLAQEVATFAVSFAQVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R ++ +N+G A Sbjct: 117 VPC-EEKVKQHARERYKIYRNAGRA 140 >gi|253775118|ref|YP_003037949.1| DNA polymerase III subunit chi [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164184|ref|YP_003047294.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606] gi|297520319|ref|ZP_06938705.1| DNA polymerase III subunit chi [Escherichia coli OP50] gi|301028096|ref|ZP_07191374.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1] gi|312965939|ref|ZP_07780165.1| DNA polymerase III subunit chi [Escherichia coli 2362-75] gi|31323177|gb|AAP43522.1| HolC [Escherichia coli B] gi|242379779|emb|CAQ34606.1| DNA polymerase III, chi subunit, subunit of DNA polymerase III, preinitiation complex and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253326162|gb|ACT30764.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976087|gb|ACT41758.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606] gi|253980243|gb|ACT45913.1| DNA polymerase III subunit chi [Escherichia coli BL21(DE3)] gi|299878813|gb|EFI87024.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1] gi|312289182|gb|EFR17076.1| DNA polymerase III subunit chi [Escherichia coli 2362-75] gi|323975398|gb|EGB70499.1| DNA polymerase III chi subunit protein [Escherichia coli TW10509] Length = 147 Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTIDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|193063698|ref|ZP_03044786.1| DNA polymerase III, chi subunit [Escherichia coli E22] gi|256019910|ref|ZP_05433775.1| DNA polymerase III subunit chi [Shigella sp. D9] gi|293476562|ref|ZP_06664970.1| DNA polymerase III subunit chi [Escherichia coli B088] gi|300818516|ref|ZP_07098725.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1] gi|300821366|ref|ZP_07101514.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7] gi|300916354|ref|ZP_07133097.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1] gi|307312966|ref|ZP_07592594.1| DNA-directed DNA polymerase [Escherichia coli W] gi|331645008|ref|ZP_08346125.1| DNA polymerase III subunit chi [Escherichia coli H736] gi|331680397|ref|ZP_08381056.1| DNA polymerase III subunit chi [Escherichia coli H591] gi|332281051|ref|ZP_08393464.1| DNA polymerase III subunit chi [Shigella sp. D9] gi|192930685|gb|EDV83291.1| DNA polymerase III, chi subunit [Escherichia coli E22] gi|291321015|gb|EFE60457.1| DNA polymerase III subunit chi [Escherichia coli B088] gi|300416333|gb|EFJ99643.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1] gi|300526255|gb|EFK47324.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7] gi|300528920|gb|EFK49982.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1] gi|306907134|gb|EFN37641.1| DNA-directed DNA polymerase [Escherichia coli W] gi|315063566|gb|ADT77893.1| DNA polymerase III, chi subunit [Escherichia coli W] gi|320200611|gb|EFW75197.1| DNA polymerase III chi subunit [Escherichia coli EC4100B] gi|324019267|gb|EGB88486.1| DNA polymerase III subunit chi [Escherichia coli MS 117-3] gi|324118820|gb|EGC12712.1| DNA polymerase III chi subunit protein [Escherichia coli E1167] gi|331035983|gb|EGI08221.1| DNA polymerase III subunit chi [Escherichia coli H736] gi|331071860|gb|EGI43196.1| DNA polymerase III subunit chi [Escherichia coli H591] gi|332103403|gb|EGJ06749.1| DNA polymerase III subunit chi [Shigella sp. D9] Length = 160 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 74 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 129 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153 >gi|308389702|gb|ADO32022.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha710] gi|325201756|gb|ADY97210.1| DNA polymerase III, chi subunit [Neisseria meningitidis M01-240149] gi|325204532|gb|ADY99985.1| DNA polymerase III, chi subunit [Neisseria meningitidis M01-240355] Length = 146 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL T+ L D A + +V+ I+ Sbjct: 61 IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138 >gi|90580733|ref|ZP_01236536.1| DNA polymerase III subunit chi [Vibrio angustum S14] gi|90438001|gb|EAS63189.1| DNA polymerase III subunit chi [Vibrio angustum S14] Length = 150 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 13/143 (9%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY + E L Y +G V + +++ + ++EYLW Sbjct: 1 MTHATFYIIDDKQESADSHFQCHFACHLAAMSYRQGNNVYLLAANKQQAEQIDEYLWQQD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + S PV + S+L +T L++ A + +VV Sbjct: 61 PDSFVPHNLVGEGPNGGS---PVEIGWSTLR-HTGRRATLINLAENAPNFAVSFAQVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135 + D+ + R +++ + +G Sbjct: 117 VPC-DEKLKQLARERYKAYRLAG 138 >gi|21244283|ref|NP_643865.1| DNA polymerase III subunit chi [Xanthomonas axonopodis pv. citri str. 306] gi|166713427|ref|ZP_02244634.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzicola BLS256] gi|289663731|ref|ZP_06485312.1| DNA polymerase III subunit chi [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668596|ref|ZP_06489671.1| DNA polymerase III subunit chi [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294625213|ref|ZP_06703854.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664576|ref|ZP_06729918.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21109931|gb|AAM38401.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas axonopodis pv. citri str. 306] gi|292600487|gb|EFF44583.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605660|gb|EFF48969.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 141 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L + + + ++L++ LW + + Sbjct: 1 MPRADFYLIAKPRFLNEPLRLVCELARKANDANLSTLILARDAEQAEALDDLLWAFDDEA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ A + R LV + ++V+ ++ Sbjct: 61 YVPHQIAGTDEED--ELAPVLIAAPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 115 -DPAAREPLRERWKQYKALG 133 >gi|58580455|ref|YP_199471.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622415|ref|YP_449787.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578610|ref|YP_001915539.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425049|gb|AAW74086.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366355|dbj|BAE67513.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188523062|gb|ACD61007.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 141 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L + + ++L++ LW + + Sbjct: 1 MPRADFYLIAKPRFLNEPLRLVCELARKANNANLSTLILARDAEQAEALDDLLWAFDDEA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ A + R LV + ++V+ ++ Sbjct: 61 YVPHQIAGTDEED--ELAPVLIAAPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 115 -DPAAREPLRERWKQYKALG 133 >gi|309792900|ref|ZP_07687328.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7] gi|308123186|gb|EFO60448.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7] gi|323965648|gb|EGB61102.1| DNA polymerase III chi subunit protein [Escherichia coli M863] gi|327250204|gb|EGE61923.1| DNA polymerase III subunit chi [Escherichia coli STEC_7v] Length = 147 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + ++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSNPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|254037281|ref|ZP_04871358.1| DNA polymerase III [Escherichia sp. 1_1_43] gi|226840387|gb|EEH72389.1| DNA polymerase III [Escherichia sp. 1_1_43] Length = 147 Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLNAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|15804851|ref|NP_290892.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 EDL933] gi|15834490|ref|NP_313263.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. Sakai] gi|26251167|ref|NP_757207.1| DNA polymerase III subunit chi [Escherichia coli CFT073] gi|74314738|ref|YP_313157.1| DNA polymerase III subunit chi [Shigella sonnei Ss046] gi|82546488|ref|YP_410435.1| DNA polymerase III subunit chi [Shigella boydii Sb227] gi|82779325|ref|YP_405674.1| DNA polymerase III subunit chi [Shigella dysenteriae Sd197] gi|91213814|ref|YP_543800.1| DNA polymerase III subunit chi [Escherichia coli UTI89] gi|110644618|ref|YP_672348.1| DNA polymerase III subunit chi [Escherichia coli 536] gi|110808001|ref|YP_691521.1| DNA polymerase III subunit chi [Shigella flexneri 5 str. 8401] gi|117626603|ref|YP_859926.1| DNA polymerase III subunit chi [Escherichia coli APEC O1] gi|157159204|ref|YP_001465767.1| DNA polymerase III subunit chi [Escherichia coli E24377A] gi|157163734|ref|YP_001461052.1| DNA polymerase III subunit chi [Escherichia coli HS] gi|168751048|ref|ZP_02776070.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4113] gi|168754839|ref|ZP_02779846.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4401] gi|168760512|ref|ZP_02785519.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4501] gi|168766548|ref|ZP_02791555.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4486] gi|168774021|ref|ZP_02799028.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4196] gi|168782784|ref|ZP_02807791.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4076] gi|168784907|ref|ZP_02809914.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC869] gi|168797837|ref|ZP_02822844.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC508] gi|170021733|ref|YP_001726687.1| DNA polymerase III subunit chi [Escherichia coli ATCC 8739] gi|170766907|ref|ZP_02901360.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627] gi|187734100|ref|YP_001882957.1| DNA polymerase III subunit chi [Shigella boydii CDC 3083-94] gi|188496447|ref|ZP_03003717.1| DNA polymerase III, chi subunit [Escherichia coli 53638] gi|191167277|ref|ZP_03029095.1| DNA polymerase III, chi subunit [Escherichia coli B7A] gi|191170788|ref|ZP_03032340.1| DNA polymerase III, chi subunit [Escherichia coli F11] gi|193069853|ref|ZP_03050803.1| DNA polymerase III, chi subunit [Escherichia coli E110019] gi|194426628|ref|ZP_03059182.1| DNA polymerase III, chi subunit [Escherichia coli B171] gi|194433898|ref|ZP_03066171.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012] gi|195937284|ref|ZP_03082666.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. EC4024] gi|208805655|ref|ZP_03247992.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4206] gi|208813184|ref|ZP_03254513.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4045] gi|208821682|ref|ZP_03262002.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4042] gi|209400926|ref|YP_002273803.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4115] gi|209921756|ref|YP_002295840.1| DNA polymerase III subunit chi [Escherichia coli SE11] gi|215489601|ref|YP_002332032.1| DNA polymerase III subunit chi [Escherichia coli O127:H6 str. E2348/69] gi|217325710|ref|ZP_03441794.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW14588] gi|218551555|ref|YP_002385347.1| DNA polymerase III subunit chi [Escherichia fergusonii ATCC 35469] gi|218556806|ref|YP_002389720.1| DNA polymerase III subunit chi [Escherichia coli IAI1] gi|218561417|ref|YP_002394330.1| DNA polymerase III subunit chi [Escherichia coli S88] gi|218692646|ref|YP_002400858.1| DNA polymerase III subunit chi [Escherichia coli ED1a] gi|218698007|ref|YP_002405674.1| DNA polymerase III subunit chi [Escherichia coli 55989] gi|218702962|ref|YP_002410591.1| DNA polymerase III subunit chi [Escherichia coli IAI39] gi|218707865|ref|YP_002415384.1| DNA polymerase III subunit chi [Escherichia coli UMN026] gi|227886687|ref|ZP_04004492.1| DNA polymerase III, chi subunit [Escherichia coli 83972] gi|237703934|ref|ZP_04534415.1| DNA polymerase III [Escherichia sp. 3_2_53FAA] gi|254796279|ref|YP_003081116.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. TW14359] gi|260847090|ref|YP_003224868.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str. 12009] gi|260871011|ref|YP_003237413.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str. 11128] gi|261225378|ref|ZP_05939659.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255369|ref|ZP_05947902.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285671|ref|YP_003502489.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str. CB9615] gi|293402884|ref|ZP_06646981.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412] gi|293417758|ref|ZP_06660380.1| DNA polymerase III subunit chi [Escherichia coli B185] gi|298378410|ref|ZP_06988294.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302] gi|300899408|ref|ZP_07117663.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1] gi|300906106|ref|ZP_07123825.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1] gi|300923936|ref|ZP_07139946.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1] gi|300928084|ref|ZP_07143632.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1] gi|300950213|ref|ZP_07164153.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1] gi|300957119|ref|ZP_07169360.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1] gi|300972384|ref|ZP_07171917.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1] gi|300988163|ref|ZP_07178583.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1] gi|301050055|ref|ZP_07196967.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1] gi|301304690|ref|ZP_07210798.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1] gi|301643394|ref|ZP_07243444.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1] gi|306815523|ref|ZP_07449672.1| DNA polymerase III subunit chi [Escherichia coli NC101] gi|307140954|ref|ZP_07500310.1| DNA polymerase III subunit chi [Escherichia coli H736] gi|309784108|ref|ZP_07678750.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617] gi|312973924|ref|ZP_07788095.1| DNA polymerase III subunit chi [Escherichia coli 1827-70] gi|331650392|ref|ZP_08351464.1| DNA polymerase III subunit chi [Escherichia coli M605] gi|331656093|ref|ZP_08357081.1| DNA polymerase III subunit chi [Escherichia coli M718] gi|331660840|ref|ZP_08361772.1| DNA polymerase III subunit chi [Escherichia coli TA206] gi|331671167|ref|ZP_08372000.1| DNA polymerase III subunit chi [Escherichia coli TA271] gi|12519268|gb|AAG59458.1|AE005657_18 DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EDL933] gi|26111599|gb|AAN83781.1|AE016771_292 DNA polymerase III, chi subunit [Escherichia coli CFT073] gi|13364714|dbj|BAB38659.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. Sakai] gi|73858215|gb|AAZ90922.1| DNA polymerase III chi subunit [Shigella sonnei Ss046] gi|81243473|gb|ABB64183.1| DNA polymerase III, chi subunit [Shigella dysenteriae Sd197] gi|81247899|gb|ABB68607.1| DNA polymerase III chi subunit [Shigella boydii Sb227] gi|91075388|gb|ABE10269.1| DNA polymerase III, chi subunit [Escherichia coli UTI89] gi|110346210|gb|ABG72447.1| DNA polymerase III, chi subunit [Escherichia coli 536] gi|110617549|gb|ABF06216.1| DNA polymerase III, chi subunit [Shigella flexneri 5 str. 8401] gi|115515727|gb|ABJ03802.1| DNA polymerase III subunit chi [Escherichia coli APEC O1] gi|157069414|gb|ABV08669.1| DNA polymerase III, chi subunit [Escherichia coli HS] gi|157081234|gb|ABV20942.1| DNA polymerase III, chi subunit [Escherichia coli E24377A] gi|169756661|gb|ACA79360.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739] gi|170124345|gb|EDS93276.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627] gi|187431092|gb|ACD10366.1| DNA polymerase III, chi subunit [Shigella boydii CDC 3083-94] gi|187770208|gb|EDU34052.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4196] gi|188014810|gb|EDU52932.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4113] gi|188491646|gb|EDU66749.1| DNA polymerase III, chi subunit [Escherichia coli 53638] gi|188999780|gb|EDU68766.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4076] gi|189357771|gb|EDU76190.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4401] gi|189364253|gb|EDU82672.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4486] gi|189368872|gb|EDU87288.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4501] gi|189375030|gb|EDU93446.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC869] gi|189379542|gb|EDU97958.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC508] gi|190902730|gb|EDV62461.1| DNA polymerase III, chi subunit [Escherichia coli B7A] gi|190909012|gb|EDV68599.1| DNA polymerase III, chi subunit [Escherichia coli F11] gi|192956907|gb|EDV87360.1| DNA polymerase III, chi subunit [Escherichia coli E110019] gi|194415367|gb|EDX31635.1| DNA polymerase III, chi subunit [Escherichia coli B171] gi|194417879|gb|EDX33975.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012] gi|208725456|gb|EDZ75057.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4206] gi|208734461|gb|EDZ83148.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4045] gi|208741805|gb|EDZ89487.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4042] gi|209162326|gb|ACI39759.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4115] gi|209749468|gb|ACI73041.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749470|gb|ACI73042.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749472|gb|ACI73043.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749474|gb|ACI73044.1| DNA polymerase III chi subunit [Escherichia coli] gi|209749476|gb|ACI73045.1| DNA polymerase III chi subunit [Escherichia coli] gi|209915015|dbj|BAG80089.1| DNA polymerase III chi subunit [Escherichia coli SE11] gi|215267673|emb|CAS12131.1| DNA polymerase III, chi subunit [Escherichia coli O127:H6 str. E2348/69] gi|217321931|gb|EEC30355.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW14588] gi|218354739|emb|CAV01801.1| DNA polymerase III, chi subunit [Escherichia coli 55989] gi|218359097|emb|CAQ91758.1| DNA polymerase III, chi subunit [Escherichia fergusonii ATCC 35469] gi|218363575|emb|CAR01232.1| DNA polymerase III, chi subunit [Escherichia coli IAI1] gi|218368186|emb|CAR05994.1| DNA polymerase III, chi subunit [Escherichia coli S88] gi|218372948|emb|CAR20829.1| DNA polymerase III, chi subunit [Escherichia coli IAI39] gi|218430210|emb|CAR11067.1| DNA polymerase III, chi subunit [Escherichia coli ED1a] gi|218434962|emb|CAR15903.1| DNA polymerase III, chi subunit [Escherichia coli UMN026] gi|222036031|emb|CAP78776.1| DNA polymerase III subunit chi [Escherichia coli LF82] gi|226901846|gb|EEH88105.1| DNA polymerase III [Escherichia sp. 3_2_53FAA] gi|227836260|gb|EEJ46726.1| DNA polymerase III, chi subunit [Escherichia coli 83972] gi|254595679|gb|ACT75040.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW14359] gi|257762237|dbj|BAI33734.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str. 12009] gi|257767367|dbj|BAI38862.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str. 11128] gi|281181357|dbj|BAI57687.1| DNA polymerase III chi subunit [Escherichia coli SE15] gi|284924429|emb|CBG37554.1| DNA polymerase III, chi subunit [Escherichia coli 042] gi|290765544|gb|ADD59505.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str. CB9615] gi|291429799|gb|EFF02813.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412] gi|291430476|gb|EFF03474.1| DNA polymerase III subunit chi [Escherichia coli B185] gi|294489855|gb|ADE88611.1| DNA polymerase III, chi subunit [Escherichia coli IHE3034] gi|298280744|gb|EFI22245.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302] gi|300298213|gb|EFJ54598.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1] gi|300305973|gb|EFJ60493.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1] gi|300316137|gb|EFJ65921.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1] gi|300356986|gb|EFJ72856.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1] gi|300402049|gb|EFJ85587.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1] gi|300410963|gb|EFJ94501.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1] gi|300419814|gb|EFK03125.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1] gi|300450434|gb|EFK14054.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1] gi|300463881|gb|EFK27374.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1] gi|300840040|gb|EFK67800.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1] gi|301078224|gb|EFK93030.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1] gi|305851185|gb|EFM51640.1| DNA polymerase III subunit chi [Escherichia coli NC101] gi|307556429|gb|ADN49204.1| DNA polymerase III, chi subunit [Escherichia coli ABU 83972] gi|307629335|gb|ADN73639.1| DNA polymerase III subunit chi [Escherichia coli UM146] gi|308928101|gb|EFP73566.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617] gi|309704763|emb|CBJ04114.1| DNA polymerase III, chi subunit [Escherichia coli ETEC H10407] gi|310331458|gb|EFP98714.1| DNA polymerase III subunit chi [Escherichia coli 1827-70] gi|312948912|gb|ADR29739.1| DNA polymerase III subunit chi [Escherichia coli O83:H1 str. NRG 857C] gi|315255616|gb|EFU35584.1| DNA polymerase III subunit chi [Escherichia coli MS 85-1] gi|315288384|gb|EFU47782.1| DNA polymerase III subunit chi [Escherichia coli MS 110-3] gi|315293630|gb|EFU52982.1| DNA polymerase III subunit chi [Escherichia coli MS 153-1] gi|315298975|gb|EFU58229.1| DNA polymerase III subunit chi [Escherichia coli MS 16-3] gi|320174753|gb|EFW49882.1| DNA polymerase III chi subunit [Shigella dysenteriae CDC 74-1112] gi|320177613|gb|EFW52603.1| DNA polymerase III chi subunit [Shigella boydii ATCC 9905] gi|320190607|gb|EFW65257.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. EC1212] gi|320193623|gb|EFW68258.1| DNA polymerase III chi subunit [Escherichia coli WV_060327] gi|320639016|gb|EFX08662.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. G5101] gi|320644386|gb|EFX13451.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str. 493-89] gi|320649703|gb|EFX18227.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str. H 2687] gi|320655100|gb|EFX23061.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660606|gb|EFX28067.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str. USDA 5905] gi|320665533|gb|EFX32579.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. LSU-61] gi|323162057|gb|EFZ47929.1| DNA polymerase III subunit chi [Escherichia coli E128010] gi|323166622|gb|EFZ52381.1| DNA polymerase III subunit chi [Shigella sonnei 53G] gi|323176173|gb|EFZ61765.1| DNA polymerase III subunit chi [Escherichia coli 1180] gi|323181992|gb|EFZ67403.1| DNA polymerase III subunit chi [Escherichia coli 1357] gi|323189860|gb|EFZ75138.1| DNA polymerase III subunit chi [Escherichia coli RN587/1] gi|323380354|gb|ADX52622.1| DNA-directed DNA polymerase [Escherichia coli KO11] gi|323935381|gb|EGB31729.1| DNA polymerase III chi [Escherichia coli E1520] gi|323940177|gb|EGB36371.1| DNA polymerase III chi subunit protein [Escherichia coli E482] gi|323945992|gb|EGB42030.1| DNA polymerase III chi [Escherichia coli H120] gi|323950672|gb|EGB46550.1| DNA polymerase III chi subunit protein [Escherichia coli H252] gi|323955545|gb|EGB51309.1| DNA polymerase III chi subunit protein [Escherichia coli H263] gi|323960300|gb|EGB55941.1| DNA polymerase III chi subunit protein [Escherichia coli H489] gi|324005160|gb|EGB74379.1| DNA polymerase III subunit chi [Escherichia coli MS 57-2] gi|324013723|gb|EGB82942.1| DNA polymerase III subunit chi [Escherichia coli MS 60-1] gi|324112117|gb|EGC06095.1| DNA polymerase III chi subunit protein [Escherichia fergusonii B253] gi|326345408|gb|EGD69151.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. 1125] gi|326346736|gb|EGD70470.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. 1044] gi|331040786|gb|EGI12944.1| DNA polymerase III subunit chi [Escherichia coli M605] gi|331046447|gb|EGI18537.1| DNA polymerase III subunit chi [Escherichia coli M718] gi|331051882|gb|EGI23921.1| DNA polymerase III subunit chi [Escherichia coli TA206] gi|331061756|gb|EGI33682.1| DNA polymerase III subunit chi [Escherichia coli TA271] gi|332083259|gb|EGI88490.1| DNA polymerase III subunit chi [Shigella boydii 5216-82] gi|332083710|gb|EGI88928.1| DNA polymerase III subunit chi [Shigella dysenteriae 155-74] gi|332087007|gb|EGI92141.1| DNA polymerase III subunit chi [Shigella boydii 3594-74] gi|332346337|gb|AEE59671.1| DNA polymerase III subunit [Escherichia coli UMNK88] gi|333010225|gb|EGK29658.1| DNA polymerase III subunit chi [Shigella flexneri VA-6] gi|333011248|gb|EGK30662.1| DNA polymerase III subunit chi [Shigella flexneri K-272] gi|333012145|gb|EGK31527.1| DNA polymerase III subunit chi [Shigella flexneri K-227] Length = 147 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|237729196|ref|ZP_04559677.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2] gi|226908925|gb|EEH94843.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2] Length = 147 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 MR FY ND E + + + + GKRV + C +E+ L+E LW Sbjct: 1 MRNATFYILDNDNTVDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + N+S L+ + +V+ Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDLLISLRVGFADFATAFTEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQSARDRYKAYRVAGFN 140 >gi|145629512|ref|ZP_01785310.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21] gi|145639006|ref|ZP_01794614.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII] gi|144978355|gb|EDJ88119.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21] gi|145271978|gb|EDK11887.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII] gi|309750966|gb|ADO80950.1| DNA polymerase III, chi subunit [Haemophilus influenzae R2866] Length = 144 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRQQG 135 >gi|194364313|ref|YP_002026923.1| DNA polymerase III subunit chi [Stenotrophomonas maltophilia R551-3] gi|194347117|gb|ACF50240.1| DNA polymerase III chi subunit HolC [Stenotrophomonas maltophilia R551-3] Length = 141 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L + + G V + + L+E LW + D Sbjct: 1 MPRADFYLIAKPRFLTEPLRLVCELARKANDAGLFTLVLARDQAQAEELDELLWAFDNDA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 ++PH + D + + VL+ + + + L DE + E+V+ ++ Sbjct: 61 YIPHQIAGEDMDEEEAL--VLIAVPGTEAPARPLVINLRDE-----PWLGQCERVLEVVP 113 Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136 D + E R WR K +GY Sbjct: 114 A-DPEAREPLRERWRQYKAAGY 134 >gi|224825297|ref|ZP_03698402.1| DNA polymerase III chi subunit HolC [Lutiella nitroferrum 2002] gi|224602218|gb|EEG08396.1| DNA polymerase III chi subunit HolC [Lutiella nitroferrum 2002] Length = 140 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + FY D + L Q + KG+R+ V E + LW+ F+PH Sbjct: 1 MPRIDFYTNVADPQAFACRLAQTVFRKGERLLVWLADEGQLAGFSARLWSIADIQFVPH- 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 E + P+ LT L++ +++ +++ I+ D+ S Sbjct: 60 --CELEAGEAPETPIWLTTRL--PAELEHPVLLNLGPELPAHPEHFARILEIV-GCDEAS 114 Query: 121 LEWGRAHWRSLKNSGYAPD 139 L R +R + + Y + Sbjct: 115 LATARERFRFYRAAAYEIE 133 >gi|330824942|ref|YP_004388245.1| DNA polymerase III subunit chi HolC [Alicycliphilus denitrificans K601] gi|329310314|gb|AEB84729.1| DNA polymerase III chi subunit HolC [Alicycliphilus denitrificans K601] Length = 154 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L + RV + G+ + L+ LW F+ H Sbjct: 10 MTEVAFHFNAPDKLAYVCRLARKAMRHDARVVI-TGAAQDLQQLDRMLWALGTTDFVAHC 68 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ + PV+L + S LV+ + ++V +++ DQ Sbjct: 69 LE-DAGEEMLQLSPVVLARDACV--CSHRDMLVNVGDTVPEGFAQFARLVEVVSQSDQAD 125 Query: 121 LEWGRAHWRSLKNSGY 136 R WR GY Sbjct: 126 RSRARERWRHYAARGY 141 >gi|319788016|ref|YP_004147491.1| DNA polymerase III subunit chi [Pseudoxanthomonas suwonensis 11-1] gi|317466528|gb|ADV28260.1| DNA polymerase III chi subunit HolC [Pseudoxanthomonas suwonensis 11-1] Length = 140 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 15/142 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLL-----QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY +LL + + + V + +++ LW+++ D Sbjct: 1 MPRADFYLIAKPRFAEQPLLLVCELAKRAHAANQFTLVLARDAAQAEEIDDLLWSFEPDA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISS-LNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 F+PH + +E PVL+ + L D A E+V+ ++ Sbjct: 61 FIPHQIAGDEE---DELTPVLVVPPEIEAPPRPLVINLRDAAWTEPC-----ERVLEVVP 112 Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136 D + R WR + GY Sbjct: 113 A-DPAARAPLRERWRQYQALGY 133 >gi|319762862|ref|YP_004126799.1| DNA polymerase iii chi subunit holc [Alicycliphilus denitrificans BC] gi|317117423|gb|ADU99911.1| DNA polymerase III chi subunit HolC [Alicycliphilus denitrificans BC] Length = 154 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 4/136 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L + RV + G+ + L+ LW F+ H Sbjct: 10 MTEVAFHFNAPDKLAYVCRLARKAMRHDARVVI-TGAAQDLQQLDRMLWALGTTDFVAHC 68 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 ++ + PV+L + S LV+ + ++V +++ DQ Sbjct: 69 LE-DAGEEMLQLSPVVLARDACV--CSHRDMLVNVGDTVPEGFAQFARLVEVVSQSDQAD 125 Query: 121 LEWGRAHWRSLKNSGY 136 R WR GY Sbjct: 126 RSRARERWRHYVARGY 141 >gi|161870423|ref|YP_001599595.1| DNA polymerase III chi subunit [Neisseria meningitidis 053442] gi|161595976|gb|ABX73636.1| DNA polymerase III chi subunit [Neisseria meningitidis 053442] Length = 146 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D A + +V+ I+ Sbjct: 61 IWETEEA-MPSETFVLLACGGNLPRIPEGMAVLNLSDGFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEELADARERFTAYRRSGFAIE 138 >gi|304396394|ref|ZP_07378275.1| DNA-directed DNA polymerase [Pantoea sp. aB] gi|308189154|ref|YP_003933285.1| DNA polymerase III, chi subunit [Pantoea vagans C9-1] gi|304355903|gb|EFM20269.1| DNA-directed DNA polymerase [Pantoea sp. aB] gi|308059664|gb|ADO11836.1| DNA polymerase III, chi subunit [Pantoea vagans C9-1] Length = 152 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + D E + L + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYVLETDATSDGLSAVEALVCNLAETRWRAGKRVLIACEDEQQAIRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L S+ R L+ H D V Sbjct: 61 ANAFVPHNLAGEGPRYGA---PVELAWPQRR--GSSQRDLLISLLPHFADFATAFHEVID 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + R +++ ++ G+ Sbjct: 116 FVPYEDALKQLARDRYKAYRSVGF 139 >gi|21230123|ref|NP_636040.1| DNA polymerase III subunit chi [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769886|ref|YP_244648.1| DNA polymerase III subunit chi [Xanthomonas campestris pv. campestris str. 8004] gi|188993101|ref|YP_001905111.1| DNA polymerase III subunit chi [Xanthomonas campestris pv. campestris str. B100] gi|294668031|ref|ZP_06733164.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325917729|ref|ZP_08179917.1| DNA polymerase III, chi subunit [Xanthomonas vesicatoria ATCC 35937] gi|21111653|gb|AAM39964.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575218|gb|AAY50628.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167734861|emb|CAP53072.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris pv. campestris] gi|292601902|gb|EFF45716.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325536058|gb|EGD07866.1| DNA polymerase III, chi subunit [Xanthomonas vesicatoria ATCC 35937] Length = 141 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND--WEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L L + + + ++L++ LW + + Sbjct: 1 MPRADFYLIAKPRFLDEPLRLVCELARKANDANLSTLILARDAAQAEALDDLLWAFDDEA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ A + R LV + ++V+ ++ Sbjct: 61 YVPHQIAGTDEED--ELAPVLIATPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 115 -DPAAREPLRERWKQYKALG 133 >gi|88798083|ref|ZP_01113670.1| DNA polymerase III subunit chi [Reinekea sp. MED297] gi|88779280|gb|EAR10468.1| DNA polymerase III subunit chi [Reinekea sp. MED297] Length = 140 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 13/143 (9%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + F+ + + + L K +V + S + +++ LW+ D F Sbjct: 1 MTKIDFHILPSADDSATYHYVARLANKARGKAHQVLIAVNSSEELEPVSQALWSVSPDSF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 L H F P+ LT S L++ +++V+ ++ + Sbjct: 61 LAH--TNCATAPF----PLQLTASEEC--GDHHDVLINLCHETPTFFSRFKRVIEVV-SQ 111 Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139 D L+ R+ +R ++GY + Sbjct: 112 DPIRLQASRSRYRDYSDNGYPIE 134 >gi|262376974|ref|ZP_06070200.1| DNA polymerase III chi subunit [Acinetobacter lwoffii SH145] gi|262308012|gb|EEY89149.1| DNA polymerase III chi subunit [Acinetobacter lwoffii SH145] Length = 135 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + + R+ + C ++ L+E LW++ F+ Sbjct: 1 MAKVSFYLFEKSPERQVDSTCRLCRKILRQPARIWLLCADTDLQQQLDERLWSFDPASFI 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PHG+D QP S + + + + + ++ II Sbjct: 61 PHGID----------QPQATVCISATLPEQSDWIIFNFNPEALEPYTKFSHIIEIIENH- 109 Query: 118 QGSLEWGRAHWRSLKNSGYAPD 139 + + + GR ++ + G PD Sbjct: 110 ETAKQLGREKFKQYRRLGIEPD 131 >gi|157829183|ref|YP_001495425.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933911|ref|YP_001650700.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. Iowa] gi|157801664|gb|ABV76917.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908998|gb|ABY73294.1| DNA polymerase III, chi subunit [Rickettsia rickettsii str. Iowa] Length = 154 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y + + ++ LN+ LWT+ + F+PHG + QP+ +T Sbjct: 23 EKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79 Query: 82 LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114 N N +++ ++ + + +++++ I + Sbjct: 80 QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 117 >gi|15893269|ref|NP_360983.1| DNA polymerase III subunit chi [Rickettsia conorii str. Malish 7] gi|34581064|ref|ZP_00142544.1| hypothetical protein [Rickettsia sibirica 246] gi|229587243|ref|YP_002845744.1| DNA polymerase III subunit chi [Rickettsia africae ESF-5] gi|238651118|ref|YP_002916976.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic] gi|15620489|gb|AAL03884.1| unknown [Rickettsia conorii str. Malish 7] gi|28262449|gb|EAA25953.1| unknown [Rickettsia sibirica 246] gi|228022293|gb|ACP54001.1| DNA polymerase III chi subunit HolC [Rickettsia africae ESF-5] gi|238625216|gb|ACR47922.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic] Length = 154 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y + + ++ LN+ LWT+ + F+PHG + QP+ +T Sbjct: 23 EKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79 Query: 82 LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114 N N +++ ++ + + +++++ I + Sbjct: 80 QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 117 >gi|315617672|gb|EFU98278.1| DNA polymerase III subunit chi [Escherichia coli 3431] Length = 147 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 VESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|259907064|ref|YP_002647420.1| DNA polymerase III subunit chi [Erwinia pyrifoliae Ep1/96] gi|224962686|emb|CAX54141.1| DNA polymerase III, chi subunit HolC [Erwinia pyrifoliae Ep1/96] gi|283476864|emb|CAY72711.1| holC [Erwinia pyrifoliae DSM 12163] Length = 151 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + D E + L + + +GKRV + C E L+E LW Sbjct: 1 MKNATFYLLETDIPVDGLSAHEALVCSLAEARWREGKRVLIACEDEAQAIRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L+ + +V+ Sbjct: 61 ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139 >gi|332535157|ref|ZP_08410966.1| DNA polymerase III chi subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035427|gb|EGI71926.1| DNA polymerase III chi subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 148 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 Y G+RV + +++E +W + D F+PH + + PV + I+ Sbjct: 35 YRNGQRVFICVNDNEAACAIDEIIWAFDPDSFVPHNLQGEGPKGGA---PVEIGITPPVG 91 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 N + L++ A+ + + +V + + + + R ++ L+ G Sbjct: 92 NR---KVLINLATQLPDYIRRFNQVFDFVPV-EPAAKQAARERFKKLRQLG 138 >gi|59711019|ref|YP_203795.1| DNA polymerase III subunit chi [Vibrio fischeri ES114] gi|197336037|ref|YP_002155168.1| DNA polymerase III subunit chi [Vibrio fischeri MJ11] gi|59479120|gb|AAW84907.1| DNA polymerase III, chi subunit [Vibrio fischeri ES114] gi|197317527|gb|ACH66974.1| DNA polymerase III subunit chi [Vibrio fischeri MJ11] Length = 147 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M LFY + + L Y + RV V + ++E LW + Sbjct: 1 MSQALFYVLEPTSPAATTDGQLKFVCQLAHYYYSQNARVYVLAQDKEQALLIDEALWQYD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F PH + S P+ + +L ++ L++ A + +VV Sbjct: 61 VSEFTPHNLVGEG---PKSGSPIEIGWGTLRSSGRRH-VLINLAQEVASFAVSFAQVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ S + R ++ +N+G A Sbjct: 117 VPC-EEKSKQQARERYKIYRNAGRA 140 >gi|89075939|ref|ZP_01162314.1| DNA polymerase III, chi subunit [Photobacterium sp. SKA34] gi|89048380|gb|EAR53958.1| DNA polymerase III, chi subunit [Photobacterium sp. SKA34] Length = 150 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 13/143 (9%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY + E L Y +G V + +++ + ++EYLW Sbjct: 1 MTHATFYIIDDKQESADSHFQCHFACHLAAMSYRQGNNVYLLAENKKQAEQIDEYLWQQD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + S PV + S+L +T L++ A + +VV Sbjct: 61 PDSFVPHNLVGEGPNGGS---PVEIGWSTLR-HTGRRATLINLAENAPNFAVSFAQVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135 + D+ + R +++ + +G Sbjct: 117 VPC-DEKLKQLARERYKAYRLAG 138 >gi|16132081|ref|NP_418680.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. MG1655] gi|89110975|ref|AP_004755.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. W3110] gi|170083698|ref|YP_001733018.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. DH10B] gi|238903360|ref|YP_002929156.1| DNA polymerase III, chi subunit [Escherichia coli BW2952] gi|123454|sp|P28905|HOLC_ECOLI RecName: Full=DNA polymerase III subunit chi gi|34810156|pdb|1EM8|A Chain A, Crystal Structure Of Chi And Psi Subunit Heterodimer From Dna Pol Iii gi|34810158|pdb|1EM8|C Chain C, Crystal Structure Of Chi And Psi Subunit Heterodimer From Dna Pol Iii gi|41740|emb|CAA78524.1| DNA polymerase III holoenzyme chi subunit [Escherichia coli] gi|145537|gb|AAA70368.1| DNA polymerase III chi subunit [Escherichia coli] gi|537101|gb|AAA97156.1| DNA polymerase III chi subunit [Escherichia coli str. K-12 substr. MG1655] gi|1790709|gb|AAC77216.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. MG1655] gi|85677006|dbj|BAE78256.1| DNA polymerase III, chi subunit [Escherichia coli str. K12 substr. W3110] gi|169891533|gb|ACB05240.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860832|gb|ACR62830.1| DNA polymerase III, chi subunit [Escherichia coli BW2952] gi|260450921|gb|ACX41343.1| DNA-directed DNA polymerase [Escherichia coli DH1] gi|315138810|dbj|BAJ45969.1| DNA polymerase III subunit chi [Escherichia coli DH1] gi|742337|prf||2009369A DNA polymerase III:SUBUNIT=chi Length = 147 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + + +S L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRS-SSRRDILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|310766277|gb|ADP11227.1| DNA polymerase III subunit chi [Erwinia sp. Ejp617] Length = 151 Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + D E + L + + +GKRV + C E L+E LW Sbjct: 1 MKNATFYLLETDIPVDGLSAHEALVCSLAEARWREGKRVLIACEDEAQAIRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L+ + +V+ Sbjct: 61 ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139 >gi|332991783|gb|AEF01838.1| DNA polymerase III chi subunit [Alteromonas sp. SN2] Length = 141 Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 61/140 (43%), Gaps = 9/140 (6%) Query: 1 MRTLLFYRF---KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M ++FY+ L+ D + +++SV C +++ + ++E+LW + F+ Sbjct: 1 MPQVVFYQLSAGDTSVASRASELIADAFANKQKISVLCDTQKQAEEVDEFLWQLPANRFV 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PH + S PV + + + +V+ S + + + +++ + DD Sbjct: 61 PHNLYGEG---PQSGTPVEICWQPEQV--ARRQMVVNVGSGMVPSPNQHRQIIDFVPVDD 115 Query: 118 QGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G Sbjct: 116 E-AKQAARVRYKNYQQAGCN 134 >gi|323171704|gb|EFZ57350.1| DNA polymerase III subunit chi [Escherichia coli LT-68] Length = 147 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWHSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV + +++ L+ + + +VV Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ + +G+ Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140 >gi|251791282|ref|YP_003006003.1| DNA polymerase III subunit chi [Dickeya zeae Ech1591] gi|247539903|gb|ACT08524.1| DNA-directed DNA polymerase [Dickeya zeae Ech1591] Length = 149 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E L + G+RV + C E+ L+E LW + Sbjct: 1 MKNATFYLIESDRVSGELSACEALACDLAAARWRAGQRVLIACEDEQQALKLDEALWQRE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L+ + +V+ Sbjct: 61 PHAFVPHNLAGEGPRQGA---PVELAWPQKRGNAPRDL-LISLMPQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + ++ + R +++ ++ G+ Sbjct: 117 VP-YEESLKQLARDRYKAYRSVGF 139 >gi|319776319|ref|YP_004138807.1| DNA polymerase III subunit chi [Haemophilus influenzae F3047] gi|317450910|emb|CBY87136.1| DNA polymerase III, chi subunit [Haemophilus influenzae F3047] Length = 144 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 9/136 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPSEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDD-ALR 121 Query: 122 EWGRAHWRSLKNSGYA 137 R ++ L+ G+A Sbjct: 122 TQARERYKQLRALGWA 137 >gi|260583023|ref|ZP_05850805.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae NT127] gi|260093874|gb|EEW77780.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae NT127] gi|301170151|emb|CBW29755.1| DNA polymerase III, chi subunit [Haemophilus influenzae 10810] Length = 144 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESEAQALEIDERLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|120598094|ref|YP_962668.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1] gi|146293835|ref|YP_001184259.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens CN-32] gi|120558187|gb|ABM24114.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1] gi|145565525|gb|ABP76460.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens CN-32] Length = 176 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 5/120 (4%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 L Q Y K + V + C + + ++E LW ++ F+PH + + PV + Sbjct: 48 CQLAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPHNLKGEGPITGA---PVEI 104 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 L AN S L++ A + +++ +D R +R ++ G Sbjct: 105 GFDRLGANKSRQL-LINIADQAPPFAVNFGQIID-FVANDDQHKAVARERYRQYRDLGIE 162 >gi|157965013|ref|YP_001499837.1| DNA polymerase III subunit chi [Rickettsia massiliae MTU5] gi|157844789|gb|ABV85290.1| DNA polymerase III chi subunit HolC [Rickettsia massiliae MTU5] Length = 156 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y + + ++ LN+ LWT+ + F+PHG + QP+ +T Sbjct: 25 EKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 81 Query: 82 LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114 N N +++ ++ + + +++++ I + Sbjct: 82 QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 119 >gi|325577889|ref|ZP_08148122.1| DNA-directed DNA polymerase III chi subunit [Haemophilus parainfluenzae ATCC 33392] gi|325160319|gb|EGC72446.1| DNA-directed DNA polymerase III chi subunit [Haemophilus parainfluenzae ATCC 33392] Length = 143 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GKRV + C +E ++E LW + F+PH + Sbjct: 7 FYLLNPEKKITVEQLACDLAAQAWRLGKRVLIACETEEQAFLIDEALWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 P+ ++ N L++ + +++ + ++ Sbjct: 67 SGEATQYAP---PIEISWKGKR-NAQRRDLLINLQMEVPDFSHSFTQLIDFVPV-EETQK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L++ G Sbjct: 122 AQARERYKVLRSQG 135 >gi|294648979|ref|ZP_06726427.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292825114|gb|EFF83869.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 135 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 14/141 (9%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + + ++ C +++ L++ LW++ + F+ Sbjct: 1 MTQVSFYLFEKSTERQVESACRLCRKILNQHPQIWWYCTDSEIQNELDDKLWSFDPNSFI 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PHG+D S Q L + I F + ++ + + ++ II ++ Sbjct: 61 PHGIDQSHSSVCISEQ--------LPPSNDWIVFNFNNHAL--EQIQDFRHIIEIIE-NN 109 Query: 118 QGSLEWGRAHWRSLKNSGYAP 138 + + + GR +++ + G P Sbjct: 110 ETAKQLGREKFKTYRRLGIEP 130 >gi|261494837|ref|ZP_05991315.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309548|gb|EEY10773.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 145 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 1 MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M+ + FY + E L + KRV + C +E+ +++E LW Sbjct: 1 MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLSKRVLIACETEQQALNIDEALWARDP 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113 D F+PH + + P+ ++ N L+ + + + +++ + Sbjct: 61 DSFVPHNLSGEITTYPT---PIEISWKGKR-NAQRRDLLISLQTQLPEFIGSFTQIIDFV 116 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 ++ + R ++ + G+ + I Sbjct: 117 PV-EETAKAQARDRYKQYRQLGWQLETI 143 >gi|319897049|ref|YP_004135244.1| DNA polymerase iii, chi subunit [Haemophilus influenzae F3031] gi|329123469|ref|ZP_08252033.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius ATCC 11116] gi|317432553|emb|CBY80913.1| DNA polymerase III, chi subunit [Haemophilus influenzae F3031] gi|327471051|gb|EGF16506.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius ATCC 11116] Length = 144 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 9/136 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSGYA 137 R ++ L+ G+A Sbjct: 122 TQARERYKQLRALGWA 137 >gi|113461407|ref|YP_719476.1| DNA polymerase III subunit chi [Haemophilus somnus 129PT] gi|112823450|gb|ABI25539.1| DNA polymerase III, chi subunit [Haemophilus somnus 129PT] Length = 147 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 14 EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73 E L + GK+V + C +E L+E LW D F+PH + + Sbjct: 23 ESLACDLAASAWRLGKKVLITCETEEQALKLDEALWQRDPDEFVPHNLSGEMTSYVT--- 79 Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 P+ ++ NT L++ S + + +++ + D+ R ++SL++ Sbjct: 80 PIEISWQGKR-NTQRRDILINLQSQLPDFIMSFNQLIDFVPV-DEQLKILARERYKSLRS 137 Query: 134 SG 135 G Sbjct: 138 QG 139 >gi|319427209|gb|ADV55283.1| DNA polymerase III chi subunit HolC [Shewanella putrefaciens 200] Length = 170 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 5/120 (4%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 L Q Y K + V + C + + ++E LW ++ F+PH + + PV + Sbjct: 42 CQLAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPHNLKGEGPITGA---PVEI 98 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 L AN S L++ A + +++ +D R +R ++ G Sbjct: 99 GFDRLGANKSRQL-LINIADQAPPFAVNFGQIID-FVANDDQHKAVARERYRQYRDLGIE 156 >gi|255020896|ref|ZP_05292952.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC 51756] gi|254969687|gb|EET27193.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC 51756] Length = 143 Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 18/145 (12%) Query: 1 MRTLLFYRFKNDWE------YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKD 54 M + FYR + + ++ ++ +V++ C E + +S+++ LWT++ Sbjct: 1 MPSASFYRLPANLLTATEQHRAVCRVVAKAWQVLGQVNILCRDEELAESMDDLLWTYQAG 60 Query: 55 GFLPHGVDVGDEGDFSSFQPVLLTISSLNA--NTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F PHG +PV L + + + LV G++ +++ Sbjct: 61 AFTPHGR--------DPQEPVCLYAGTDASVLRPAPALALV-GLRELPGNLPDAARLLDF 111 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 I D+ + R +R L+ +GY Sbjct: 112 IP-PDESGVADARQRYRILREAGYT 135 >gi|188532526|ref|YP_001906323.1| DNA polymerase III subunit chi [Erwinia tasmaniensis Et1/99] gi|188027568|emb|CAO95415.1| DNA polymerase III, chi subunit HolC [Erwinia tasmaniensis Et1/99] Length = 151 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + D E + L + + +GKRV + C E L+E LW Sbjct: 1 MKNATFYLLETDAPVGELSAQEALVCSLAEARWREGKRVLIACEDEAQAIRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L+ + +V+ Sbjct: 61 ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139 >gi|237807327|ref|YP_002891767.1| DNA polymerase III chi subunit HolC [Tolumonas auensis DSM 9187] gi|237499588|gb|ACQ92181.1| DNA polymerase III chi subunit HolC [Tolumonas auensis DSM 9187] Length = 159 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 55/154 (35%), Gaps = 20/154 (12%) Query: 1 MRTLLFYRF---KNDWE---------YNL-LVLLQDEYEKGKRVSVQCGSERVRDSLNEY 47 M + FY + + L L + + + + + + ++ + L+E Sbjct: 7 MPQVTFYLLPDEASPTQICDGLSHVVAVLACQLTTERFRQNQTLFLLTQTQVQAEQLDEM 66 Query: 48 LWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107 LW F+PHG+ + + PV + + + L++ A + Sbjct: 67 LWQQDPHSFVPHGLS---DEATVTQAPVEIGTGM---PKRSRQVLINLADGIPAFAGRFA 120 Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 +++ + D+ + R ++ + G+ + + Sbjct: 121 QIIDFVPA-DEIQKQQARERYKQYRALGFTLETV 153 >gi|301156608|emb|CBW16079.1| DNA polymerase III, chi subunit [Haemophilus parainfluenzae T3T1] Length = 143 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GKRV + C +E ++E LW + F+PH + Sbjct: 7 FYLLNPEKKITVEQLACDLAAQAWRLGKRVLIACETEEQAFLIDEALWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 P+ ++ N L++ + +++ + ++ Sbjct: 67 SGEATQYAP---PIEISWKGKR-NAQRRDLLINLQMEVPDFSHSFTQLIDFVPV-EETQK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L++ G Sbjct: 122 AQARERYKILRSQG 135 >gi|149907706|ref|ZP_01896453.1| DNA polymerase III, chi subunit [Moritella sp. PE36] gi|149809376|gb|EDM69305.1| DNA polymerase III, chi subunit [Moritella sp. PE36] Length = 147 Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 17/145 (11%) Query: 1 MRTLLFYRFKND---WEYNLL-------VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 M+ + FY + E ++ L + Y++G+RV + E + ++EYLW Sbjct: 1 MKKVTFYIMQESKNGVEASMPQHHELACKLAGEFYQQGQRVYIHANDESAANQVDEYLWQ 60 Query: 51 WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 F+PH + + + PV + + L++ + +++ Sbjct: 61 LDASSFVPHNLQGEGPRNGA---PVEIGFQ---PPRHRYQVLINLHDQTPQFAVNFNQII 114 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135 + G + R ++ + +G Sbjct: 115 DFVP-HQDGLKQQARERYKHYRQTG 138 >gi|290473521|ref|YP_003466391.1| DNA polymerase III subunit chi [Xenorhabdus bovienii SS-2004] gi|289172824|emb|CBJ79595.1| DNA polymerase III, chi subunit [Xenorhabdus bovienii SS-2004] Length = 154 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%) Query: 1 MRTLLFYRFKNDWEYNL-------------LVLLQDEYEKGKRVSVQCGSERVRDSLNEY 47 M+ FY + + L L D++ GKRV + C S++ + L+E Sbjct: 1 MKNATFYLLEKLSQEQLSSSDELQPHEWLACQLAADQWRAGKRVLIACESQQQAEKLDEA 60 Query: 48 LWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107 LW + F+PH + + PV L +N LV + Sbjct: 61 LWQREPSQFVPHNLAGEGPRYGA---PVELCWPQKRSNAPR-DILVTLLPHFADFATAFH 116 Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKN 133 +V+ + D+ + R ++ ++ Sbjct: 117 EVIDFVPI-DENLKQLARERYKVYRS 141 >gi|170718967|ref|YP_001784132.1| DNA polymerase III subunit chi [Haemophilus somnus 2336] gi|168827096|gb|ACA32467.1| DNA-directed DNA polymerase [Haemophilus somnus 2336] Length = 147 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 14 EYNL-LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 E +L L + GK+V + C +E L+E LW D F+PH + + Sbjct: 22 EESLTCDLAASAWRLGKKVLITCETEEQALKLDEALWQRDPDEFVPHNLSGEMTSYVT-- 79 Query: 73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 P+ ++ NT L++ S + + +++ + D+ R ++SL+ Sbjct: 80 -PIEISWQGKR-NTQRRDILINLQSQLPDFIMSFNQLIDFVPV-DEQLKILARERYKSLR 136 Query: 133 NSG 135 + G Sbjct: 137 SQG 139 >gi|88859090|ref|ZP_01133731.1| DNA polymerase III, chi subunit [Pseudoalteromonas tunicata D2] gi|88819316|gb|EAR29130.1| DNA polymerase III, chi subunit [Pseudoalteromonas tunicata D2] Length = 146 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 17/144 (11%) Query: 1 MRTLLFYRFKNDWEYNLLV-----LLQD----EYEKGKRVSVQCGSERVRDSLNEYLWTW 51 M + FY K + E + + L Y +G+RV + ++ ++EYLW + Sbjct: 1 MNAI-FYVQKQENEPDSPIAAHFDLAAKIAADCYRQGQRVFIYTENKTDAHLIDEYLWQF 59 Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 + + F+PH + EG + PV + S+ N + L++ A + + +V Sbjct: 60 EANSFVPHNLQG--EGPHNGA-PVEIGDSTPVGNR---KILINLALHVPDFIRRFNQVYD 113 Query: 112 IINTDDQGSLEWGRAHWRSLKNSG 135 + + + R ++ L+ G Sbjct: 114 FVPFQ-EEQKQAARERYKQLRQLG 136 >gi|171463869|ref|YP_001797982.1| DNA polymerase III chi subunit HolC [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193407|gb|ACB44368.1| DNA polymerase III chi subunit HolC [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 154 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 16/149 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEK---GK--RVSVQCGSERVRDSLNEYLWTWKKDG 55 M + F+ +D L + + G+ R V G + LN+ LW++ Sbjct: 1 MARIDFHSNVSDKLEYACRLARKIWSATPEGEPVRNIVMVGEKADLQKLNDLLWSFSSTD 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNA---NTSTIRFLVDE----ASMHIGDVDYYEK 108 FLPH E D ++ P++LT +A N ++ ++ V Y + Sbjct: 61 FLPH---CFIEDDAAAETPIVLTDDFASAVLGNLLHADVMIHLGMRMSADVPALVARYPR 117 Query: 109 VVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 +V ++ T ++ GR +++ ++ G+ Sbjct: 118 IVEVV-TVNEAERLAGRERFKAYRDLGHE 145 >gi|78049239|ref|YP_365414.1| DNA polymerase III subunit chi [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925504|ref|ZP_08186895.1| DNA polymerase III, chi subunit [Xanthomonas perforans 91-118] gi|78037669|emb|CAJ25414.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544096|gb|EGD15488.1| DNA polymerase III, chi subunit [Xanthomonas perforans 91-118] Length = 141 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 12/140 (8%) Query: 1 MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M FY + L + + + + ++L++ LW + + Sbjct: 1 MPRADFYLIAKPRFLNEPLRLVCELARKANDANLPTLILARDTQQAEALDDLLWAFDDEA 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 ++PH + DE D PVL+ A + R LV + ++V+ ++ Sbjct: 61 YVPHQIAGTDEED--ELAPVLIAAPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114 Query: 116 DDQGSLEWGRAHWRSLKNSG 135 D + E R W+ K G Sbjct: 115 -DPAAREPLRERWKQYKALG 133 >gi|317046769|ref|YP_004114417.1| DNA-directed DNA polymerase [Pantoea sp. At-9b] gi|316948386|gb|ADU67861.1| DNA-directed DNA polymerase [Pantoea sp. At-9b] Length = 152 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++D E + L + + GKR+ + C E+ + L+E LW Sbjct: 1 MKNATFYVMESDTASDGLSAIEALVCDLAEARWRDGKRILIACTDEQQANRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L S+ R L+ D V Sbjct: 61 ANAFVPHNLAGEGPRYGA---PVELAWPQRR--GSSPRDLLISLLPQFADFATAFHEVID 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 ++ + R +++ ++ G+ Sbjct: 116 FVPYEESQKQLARDRYKAYRSVGF 139 >gi|332290073|ref|YP_004420925.1| DNA polymerase III subunit chi [Gallibacterium anatis UMN179] gi|330432969|gb|AEC18028.1| DNA polymerase III subunit chi [Gallibacterium anatis UMN179] Length = 145 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 11/139 (7%) Query: 3 TLLFYRF------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 LFY F +N E L D + GK+V + C +E ++E LW F Sbjct: 4 QALFYVFSNTTTQENPLENKACDLAADAWRLGKKVLISCQNEEQAFLIDELLWQRDPQQF 63 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + G PV + N+ L+ + + +V+ + Sbjct: 64 VPHNLSGEVSG---FMTPVEICW-PGKRNSQRRDLLISLSLQVPEFALLFPQVIEFVPA- 118 Query: 117 DQGSLEWGRAHWRSLKNSG 135 D+ R ++ + G Sbjct: 119 DEQLKALARERYKYYRQLG 137 >gi|260914369|ref|ZP_05920838.1| DNA-directed DNA polymerase III chi subunit [Pasteurella dagmatis ATCC 43325] gi|260631470|gb|EEX49652.1| DNA-directed DNA polymerase III chi subunit [Pasteurella dagmatis ATCC 43325] Length = 142 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 7/132 (5%) Query: 6 FYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 FY ++ E L + GKRV + C +E+ ++E LW + F+PH + Sbjct: 7 FYLLSEQSQVEKIACDLAASAWRLGKRVLIACETEQQALDIDEALWVRDVEEFVPHNLSG 66 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 + P+ ++ N L++ + V + ++ + ++ Sbjct: 67 EV---TTYATPIEISWKGKR-NAQRRDLLINLQTEIPDYVSSFNHMIDFVPV-EENLKVL 121 Query: 124 GRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 ARERYKQLRQLG 133 >gi|145631354|ref|ZP_01787125.1| DNA polymerase III subunit chi [Haemophilus influenzae R3021] gi|144983013|gb|EDJ90517.1| DNA polymerase III subunit chi [Haemophilus influenzae R3021] Length = 144 Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPSEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|315634646|ref|ZP_07889930.1| DNA-directed DNA polymerase III chi subunit [Aggregatibacter segnis ATCC 33393] gi|315476594|gb|EFU67342.1| DNA-directed DNA polymerase III chi subunit [Aggregatibacter segnis ATCC 33393] Length = 148 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 14/141 (9%) Query: 6 FYRFK---------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 FY + E L + GKRV + C SE +++E LW + D F Sbjct: 7 FYLLSDSSSARSNLSAVESLACDLAASAWRLGKRVLLVCESEAQALNIDEALWQREPDEF 66 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + P+ ++ + N + L++ ++ + +++ + + Sbjct: 67 VPHNLSGEA---TTYATPIEISWTGKR-NAQSRDLLINLQPQLPEYINSFNQIIDFVPVE 122 Query: 117 DQGSLEWGRAHWRSLKNSGYA 137 +Q R ++ L+ G+A Sbjct: 123 EQPK-ALARERYKQLRQLGWA 142 >gi|319942637|ref|ZP_08016945.1| hypothetical protein HMPREF9464_02164 [Sutterella wadsworthensis 3_1_45B] gi|319803816|gb|EFW00748.1| hypothetical protein HMPREF9464_02164 [Sutterella wadsworthensis 3_1_45B] Length = 134 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 9/106 (8%) Query: 34 QCGSERV--RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRF 91 +CG R L+E LW + FLPH V + ++ P+LL+ + Sbjct: 24 RCGRRRRKKLTELDELLWRFDDLAFLPH---VFADDCHAAETPILLSTKLPQLTG-DVLV 79 Query: 92 LVDEA--SMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L+D+A + + + +++ +++T + L+ R WR+ K +G Sbjct: 80 LLDDALPADWQKEFGRFSRIIDVVST-EPTELKLSRDRWRAYKAAG 124 >gi|292486863|ref|YP_003529733.1| DNA polymerase III subunit chi [Erwinia amylovora CFBP1430] gi|292900740|ref|YP_003540109.1| DNA polymerase III subunit chi [Erwinia amylovora ATCC 49946] gi|291200588|emb|CBJ47719.1| DNA polymerase III, Chi subunit [Erwinia amylovora ATCC 49946] gi|291552280|emb|CBA19317.1| DNA polymerase III, chi subunit [Erwinia amylovora CFBP1430] gi|312170932|emb|CBX79191.1| DNA polymerase III, chi subunit [Erwinia amylovora ATCC BAA-2158] Length = 151 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + D E + L + + +GKRV + C E L+E LW Sbjct: 1 MKNATFYLLETDIPVDGLSAQEALVCSLAEARWREGKRVLIACEDEVQAIRLDEALWQRP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L+ + +V+ Sbjct: 61 ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139 >gi|77361340|ref|YP_340915.1| DNA polymerase III subunit chi [Pseudoalteromonas haloplanktis TAC125] gi|76876251|emb|CAI87473.1| DNA polymerase III, chi subunit [Pseudoalteromonas haloplanktis TAC125] Length = 148 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 Y G+RV + +E +++E LW + D F+PH + + PV + + Sbjct: 35 YRLGQRVFICVDNENTAFAIDETLWAFDPDSFVPHNLQGEGPKGGA---PVEIGTTPPVG 91 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 N + L++ A+ + + +V + + + + R ++ L+ G Sbjct: 92 NR---KVLINLANNLPDFIRRFNQVFDFVPV-EAVAKQAARERFKKLRQLG 138 >gi|309973082|gb|ADO96283.1| DNA polymerase III, chi subunit [Haemophilus influenzae R2846] Length = 144 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCKSESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|317494178|ref|ZP_07952594.1| DNA polymerase III chi subunit protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917951|gb|EFV39294.1| DNA polymerase III chi subunit protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 149 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKN--------DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++ E L +++ GKR+ + C S+ L+E LW Sbjct: 1 MKQATFYLLEHHQPDGELDAVEALACDLAAEQWRSGKRILIACQSQEQAVKLDEALWARD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + EG PV L+ N + D V Sbjct: 61 PHQFVPHNLAG--EGPHYGA-PVELSWPGKRGNAPRELMIC--LQTEFADFATAFHEVID 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + R ++ ++ G+ Sbjct: 116 FVPYEDALKQLARERYKIYRSVGF 139 >gi|32034863|ref|ZP_00134969.1| COG2927: DNA polymerase III, chi subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 123 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 L + + GKRV + C +E+ +++E LW D F+PH + P+ + Sbjct: 3 CDLAANAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNLSGEV---TQYATPIEI 59 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 + N L+ + ++ + +++ + ++ ++ R ++ + G Sbjct: 60 SWKGKR-NAQRRDVLISLQTAVPDFINSFNQIIDFVPANETEKVQ-ARERYKQYRQLG 115 >gi|16273306|ref|NP_439550.1| DNA polymerase III subunit chi [Haemophilus influenzae Rd KW20] gi|260580767|ref|ZP_05848593.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae RdAW] gi|1170335|sp|P43749|HOLC_HAEIN RecName: Full=DNA polymerase III subunit chi gi|1574233|gb|AAC23044.1| DNA polymerase III, chi subunit (holC) [Haemophilus influenzae Rd KW20] gi|260092584|gb|EEW76521.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae RdAW] Length = 144 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESEAQALEIDERLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDLLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|238921312|ref|YP_002934827.1| DNA polymerase III subunit chi [Edwardsiella ictaluri 93-146] gi|238870881|gb|ACR70592.1| DNA polymerase III subunit chi [Edwardsiella ictaluri 93-146] Length = 149 Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + E + L + GKRV + C S+ L+E LW Sbjct: 1 MKQATFYLLEQPQEADTPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L+ ++ L+ + +V+ Sbjct: 61 PQQFVPHSLAGEGPRFGA---PVELSW-PGKRGSAPRELLICLLPTFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEDVLKQLARERYKAYRSVGF 139 >gi|269140440|ref|YP_003297141.1| DNA polymerase III subunit chi [Edwardsiella tarda EIB202] gi|267986101|gb|ACY85930.1| DNA polymerase III subunit chi [Edwardsiella tarda EIB202] gi|304560233|gb|ADM42897.1| DNA polymerase III chi subunit [Edwardsiella tarda FL6-60] Length = 149 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + + L + GKRV + C S+ L+E LW Sbjct: 1 MKQATFYLLEQPQAADAPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L+ ++ L+ + +V+ Sbjct: 61 PQQFVPHSLAGEGPRFGA---PVELSW-PGKRGSAPRELLISLLPTFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + R +++ ++ G+ Sbjct: 117 VP-YEDALKQLARERYKAYRSVGF 139 >gi|68250085|ref|YP_249197.1| DNA polymerase III subunit chi [Haemophilus influenzae 86-028NP] gi|145632853|ref|ZP_01788586.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655] gi|229846748|ref|ZP_04466855.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1] gi|68058284|gb|AAX88537.1| DNA polymerase III, chi subunit [Haemophilus influenzae 86-028NP] gi|144986509|gb|EDJ93075.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655] gi|229810237|gb|EEP45956.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1] Length = 144 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|330999221|ref|ZP_08322939.1| DNA polymerase III subunit chi family protein [Parasutterella excrementihominis YIT 11859] gi|329575287|gb|EGG56835.1| DNA polymerase III subunit chi family protein [Parasutterella excrementihominis YIT 11859] Length = 154 Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M L F+ + + ++ V ++ + LW ++ F+PHG Sbjct: 13 MSDLAFHTGVENRFKYACLAMRKAQRLNMSACVLLETDDELRRFDNMLWAFEPTSFIPHG 72 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV-DEASMHI-GDVDYYEKVVFIINTDDQ 118 + V L+ + + + + L+ A + ++ + K++ I+ D Sbjct: 73 RPNTPDMQRGG---VALSTHAADLPGAELLVLLTHGAPIDTKALMERFPKIIDIV-GRDD 128 Query: 119 GSLEWGRAHWRSLKNSGYAPDVI 141 L GR + + K G P V+ Sbjct: 129 PELTEGRHRYVAYKRQGIEPTVV 151 >gi|145588809|ref|YP_001155406.1| DNA polymerase III chi subunit, HolC [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047215|gb|ABP33842.1| DNA polymerase III chi subunit, HolC [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 155 Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 16/149 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEK---GK--RVSVQCGSERVRDSLNEYLWTWKKDG 55 M + F+ D + L++ + G R V G + L+ LWT+ Sbjct: 1 MARIDFHSNVGDKLEYVCRLIRKIWSATAEGHPVRQIVIVGDKGDLQKLDSLLWTFSTTD 60 Query: 56 FLPHGVDVGDEGDFSSFQPVLL-----TISSLNANTSTIRFLVDEASMHIGDVDYYEK-- 108 FLPH + ++ P++L + + + + + M + E+ Sbjct: 61 FLPH---CSINHEAAAETPIVLADDFASTAFSQIPHADVLIHI-GVKMPPDVLGLVERFP 116 Query: 109 VVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + + T ++ GR +++ + G+ Sbjct: 117 RIVEVVTVNEAERLAGRERFKAYRALGHE 145 >gi|291327106|ref|ZP_06127006.2| DNA polymerase III, chi subunit [Providencia rettgeri DSM 1131] gi|291311567|gb|EFE52020.1| DNA polymerase III, chi subunit [Providencia rettgeri DSM 1131] Length = 168 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND-----WEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY+ K E + L + GKRV V C +++ + ++E LW Sbjct: 20 MKKGTFYQLKQASPHPELEAHEWLACELAAQMWRSGKRVLVACETQQQAEKIDEALWQRD 79 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + P+ + + NT L++ + + +VV Sbjct: 80 PHQFVPHNLAGEGPRYGA---PIEICWPAKRGNTPR-DVLINLQNQFADFATAFHEVVDF 135 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R +++ ++ G+ Sbjct: 136 VPI-DETLKQLARERYKTYRSVGFN 159 >gi|298369124|ref|ZP_06980442.1| DNA polymerase III, chi subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283127|gb|EFI24614.1| DNA polymerase III, chi subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 145 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 6/141 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY + L V V S ++ LW + + F+PH Sbjct: 1 MPKATFYTHVAEPAVFSCRLAARAMRDSH-VLVWSDSAETVARIDRDLWQFDPESFIPH- 58 Query: 61 VDVGDEG-DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV-DYYEKVVFIINTDDQ 118 ++ G S PVLL +++ + + D +V I+ Sbjct: 59 -EIWPTGSPVPSETPVLLASGFELPELPHGFAVLNLSPDFLSDAPAPPVRVFEIV-GTGL 116 Query: 119 GSLEWGRAHWRSLKNSGYAPD 139 L R +++ + G+ + Sbjct: 117 EELAEARERFKAYRGRGFEIE 137 >gi|261867746|ref|YP_003255668.1| DNA polymerase III subunit chi [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413078|gb|ACX82449.1| DNA polymerase III subunit chi [Aggregatibacter actinomycetemcomitans D11S-1] Length = 149 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 14/139 (10%) Query: 6 FYRFK---------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 FY + E L + GKRV + C +E +++E LW + D F Sbjct: 7 FYLLSDASPAQTNLSAVESLACNLAASAWRLGKRVLLACENEAQALNIDEALWQREPDEF 66 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + P+ ++ + N + L++ ++ + +++ + Sbjct: 67 VPHNLSGEA---TTYATPIEISWTGKR-NAQSRDLLINLQPQLPEFINSFNQIIDFVPA- 121 Query: 117 DQGSLEWGRAHWRSLKNSG 135 ++ R ++ L+ G Sbjct: 122 EEQQKALARERYKQLRQLG 140 >gi|293390453|ref|ZP_06634787.1| DNA polymerase III subunit chi [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950987|gb|EFE01106.1| DNA polymerase III subunit chi [Aggregatibacter actinomycetemcomitans D7S-1] Length = 149 Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70 + E L + GKRV + C +E +++E LW + D F+PH + + Sbjct: 21 SAVESLACNLAASAWRLGKRVLLACENEAQALNIDEALWQREPDEFVPHNLSGEA---TT 77 Query: 71 SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130 P+ ++ + N + L++ ++ + +++ + ++ R ++ Sbjct: 78 YATPIEISWTGKR-NAQSRDLLINLQPQLPEFINSFNQIIDFVPA-EEQQKALARERYKQ 135 Query: 131 LKNSG 135 L+ G Sbjct: 136 LRQLG 140 >gi|145634291|ref|ZP_01790001.1| DNA polymerase III subunit chi [Haemophilus influenzae PittAA] gi|145268271|gb|EDK08265.1| DNA polymerase III subunit chi [Haemophilus influenzae PittAA] Length = 144 Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + D Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQHRDLLINLQQEIPDFSHSFTQIIDFVPK-DNALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|148825936|ref|YP_001290689.1| DNA polymerase III subunit chi [Haemophilus influenzae PittEE] gi|148716096|gb|ABQ98306.1| DNA polymerase III subunit chi [Haemophilus influenzae PittEE] Length = 144 Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDEILWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|307129161|ref|YP_003881177.1| DNA polymerase III, subunit chi [Dickeya dadantii 3937] gi|306526690|gb|ADM96620.1| DNA polymerase III, chi subunit [Dickeya dadantii 3937] Length = 149 Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY +D E L + G+RV + C E+ L+E LW + Sbjct: 1 MKNATFYLIDHDRPSGELNACEALACSLAAARWRAGQRVLIACEDEQQALRLDEALWQRE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N R L+ D V Sbjct: 61 PHEFVPHNLAGEGPRQGA---PVELAWPQKRGNAP--RDLLISLQPQFADFATAFHEVID 115 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 ++ + R +++ ++ G+ Sbjct: 116 FVPYEESLKQLARDRYKAYRSVGF 139 >gi|116748664|ref|YP_845351.1| DNA polymerase III subunit chi [Syntrophobacter fumaroxidans MPOB] gi|116697728|gb|ABK16916.1| DNA polymerase III chi subunit [Syntrophobacter fumaroxidans MPOB] Length = 152 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 4/121 (3%) Query: 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 L +++ YE G++V V S +++ LWT+ F+PH + G +PV+ Sbjct: 20 LCNIVEHFYEAGRKVQVVADSTLGAQHIDQMLWTFSDRSFVPHRILDPGRGTP--LEPVV 77 Query: 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 +T+ + +A + + +E V + DD R W ++ Sbjct: 78 ITVGERILDGFDTVVC--DAECRLDFMTAFETAVHFVIRDDVDRRLQSRRMWTEARDRAL 135 Query: 137 A 137 A Sbjct: 136 A 136 >gi|229844141|ref|ZP_04464282.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1] gi|229813135|gb|EEP48823.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1] Length = 144 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWHSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|145636109|ref|ZP_01791779.1| DNA polymerase III subunit chi [Haemophilus influenzae PittHH] gi|145270631|gb|EDK10564.1| DNA polymerase III subunit chi [Haemophilus influenzae PittHH] Length = 144 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW + F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-VLK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|51474041|ref|YP_067798.1| DNA polymerase III subunit chi [Rickettsia typhi str. Wilmington] gi|51460353|gb|AAU04316.1| probable DNA-directed DNA polymerase III chi subunit HolC [Rickettsia typhi str. Wilmington] Length = 154 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 22 QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + Y + + ++ LN+ LWT+ + F+PHG + QP+ +T Sbjct: 23 EKCYYSDLKSVILTTDVDQQEMLNKNLWTYSRKQFIPHGSKF---DPQPTKQPIYITDEL 79 Query: 82 LNANTSTIRFLVDEASMH-----IGDVDYYEKVVFIIN 114 N N +++ ++ + + +++++ I + Sbjct: 80 QNPNNASVLIIISPTDIEKILQVKEYIRVFKRIIIITD 117 >gi|85060088|ref|YP_455790.1| DNA polymerase III subunit chi [Sodalis glossinidius str. 'morsitans'] gi|84780608|dbj|BAE75385.1| DNA polymerase III chi subunit [Sodalis glossinidius str. 'morsitans'] Length = 149 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKN--------DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY E L D++ +GKRV + C + L+E LW Sbjct: 1 MKNATFYLLDQHAISDGLTAVERLACDLAADKWRQGKRVLITCEDDAQALRLDEALWERD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV + N L+ + +V+ Sbjct: 61 PHAFVPHNLAGEGPRYGA---PVEICWPQRRCNAPRDL-LISLLPACADFASAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + +D + R +++ ++ G+ Sbjct: 117 VPDED-TLKQLARDRYKAYRSVGF 139 >gi|145641423|ref|ZP_01797002.1| DNA polymerase III subunit chi [Haemophilus influenzae R3021] gi|145273966|gb|EDK13833.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.4-21] Length = 144 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 6 FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61 FY E L + GK+V + C SE ++E LW F+PH + Sbjct: 7 FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPSEFVPHNL 66 Query: 62 DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121 + P+ ++ N L++ + +++ + DD Sbjct: 67 SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-VLK 121 Query: 122 EWGRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 TQARERYKQLRLQG 135 >gi|297537472|ref|YP_003673241.1| DNA polymerase III chi subunit HolC [Methylotenera sp. 301] gi|297256819|gb|ADI28664.1| DNA polymerase III chi subunit HolC [Methylotenera sp. 301] Length = 140 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 16/141 (11%) Query: 1 MRTLLFY-----RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55 M + FY +F E L + KG+++++ ++ + + LW+ Sbjct: 1 MTRVEFYFNVPDKFAKTVE-----LCEKALAKGRQLTIYTQNDAMSSEMQNLLWSHSASS 55 Query: 56 FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 FL + S F P+++ N + L++ + + +V ++ Sbjct: 56 FLA---NSHVNEAHSQFSPIVIDAQGENLLQDDV--LINLQTAQPLFFSRFRYLVELV-G 109 Query: 116 DDQGSLEWGRAHWRSLKNSGY 136 D+ R +R K+ GY Sbjct: 110 SDEADKAAARVRFRFYKDRGY 130 >gi|221133508|ref|ZP_03559813.1| DNA polymerase III chi subunit [Glaciecola sp. HTCC2999] Length = 151 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 18/146 (12%) Query: 1 MRTLLFYRFK---------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 M FY+ + L+ Y + KR++V C + ++ ++ LW Sbjct: 1 MTQANFYQLTEQDGTGFDASSIAVLACDLVARCYGEKKRLTVLCTDQAQAEAFSDLLWQH 60 Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR-FLVDEASMHIGDVDYYEKVV 110 + F+ H + ++ V +T N S IR +V+ A++ I + + Y + Sbjct: 61 PPERFIAHNIAGEGPHGGAA---VEVTWG----NQSPIRSIVVNVAALQIPNPERYHTIY 113 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSGY 136 + + + R + K +G Sbjct: 114 DFVPVAEADKI-RARQRYAFFKRAGC 138 >gi|296315186|ref|ZP_06865127.1| DNA polymerase III, chi subunit [Neisseria polysaccharea ATCC 43768] gi|296837911|gb|EFH21849.1| DNA polymerase III, chi subunit [Neisseria polysaccharea ATCC 43768] Length = 146 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY L+ G R+ V S L++ LW ++ + F+PH Sbjct: 1 MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113 + +E S VLL + L D A + +V+ I+ Sbjct: 61 IWETEEA-MPSETSVLLACGGNLPRIPEGMAVLNLSDSFWNTAPVLPA------RVLEIV 113 Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139 + L R + + + SG+A + Sbjct: 114 -GNSLEDLADARERFAAYRRSGFAIE 138 >gi|119471265|ref|ZP_01613768.1| DNA polymerase III, chi subunit [Alteromonadales bacterium TW-7] gi|119445731|gb|EAW27014.1| DNA polymerase III, chi subunit [Alteromonadales bacterium TW-7] Length = 148 Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 Y G+RV + +++E +W + D F+PH + + PV + I+ Sbjct: 35 YRNGQRVFICVNDNDTACAIDEIIWAFDPDSFVPHNLQGEGPKGGA---PVEIGITPPVG 91 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 N + L++ A+ + + +V + + + + R ++ L+ G Sbjct: 92 NR---KVLINLATQLPDYIRRFNQVFDFVPV-EPVAKQAARERFKKLRQLG 138 >gi|255320993|ref|ZP_05362166.1| DNA polymerase III, chi subunit [Acinetobacter radioresistens SK82] gi|262379917|ref|ZP_06073072.1| DNA polymerase III chi subunit [Acinetobacter radioresistens SH164] gi|255301957|gb|EET81201.1| DNA polymerase III, chi subunit [Acinetobacter radioresistens SK82] gi|262298111|gb|EEY86025.1| DNA polymerase III chi subunit [Acinetobacter radioresistens SH164] Length = 135 Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + + R+ + C + L+E LW++ F+ Sbjct: 1 MAKVSFYLFEKSQERQVESACRLCRKILRQPARIWLYCPDPSMLQQLDEALWSFDTASFI 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV-DEASMHIGDVDYYEKVVFIINTD 116 HG+D + + IS+ + + +LV + + +G V+ + ++ II + Sbjct: 61 GHGIDQVNAS---------VCISAELP--AELDWLVFNFSDKALGPVEKFGHIIEIIE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR +++ + G P Sbjct: 109 NETAKQTGREKYKTYRQLGIQP 130 >gi|293393095|ref|ZP_06637410.1| DNA-directed DNA polymerase III chi subunit [Serratia odorifera DSM 4582] gi|291424241|gb|EFE97455.1| DNA-directed DNA polymerase III chi subunit [Serratia odorifera DSM 4582] Length = 150 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 13/139 (9%) Query: 6 FYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 FY + D E + + + GKRV + C ++ L+E LW F+ Sbjct: 7 FYLLETDQPVGALSAHEAVACDVAANGFRAGKRVLIACENQEQAQRLDEALWQRDPHQFV 66 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PH + EG PV L + N L+ + +VV + + Sbjct: 67 PHNLAG--EGPHYGA-PVELCWPAKRGNAPRDL-LIALLPQFADFATAFHEVVDFVP-YE 121 Query: 118 QGSLEWGRAHWRSLKNSGY 136 + + R +++ ++ G+ Sbjct: 122 ETLKQLARDRYKAYRSVGF 140 >gi|238897459|ref|YP_002923136.1| DNA polymerase III, chi subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465214|gb|ACQ66988.1| DNA polymerase III, chi subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 150 Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%) Query: 1 MRTLLFYRFKN-------DWEYNL-LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++ E L L + GK++ + C + L++ LW + Sbjct: 1 MKRATFYLMEHGDPIHGLSPEETLTCELSAQHWRAGKKIQILCEEKAQAVRLDDALWLYP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVL---LTISSLNANTSTIRFLVDEASMHIGDVDYYEKV 109 D F+PH + + + + L+ S + L++ S I V + ++ Sbjct: 61 PDAFIPHHLSGEGPKQGAPVEMIWPDCLSHHSAD-------LLINLLSECIDFVGRFTEI 113 Query: 110 VFIINTDDQGSLEWGRAHWRSLKNSGY 136 + + + + RA + + G+ Sbjct: 114 IDFVP-YETTLKQLARARYAYYRQLGF 139 >gi|262274981|ref|ZP_06052792.1| DNA polymerase III chi subunit [Grimontia hollisae CIP 101886] gi|262221544|gb|EEY72858.1| DNA polymerase III chi subunit [Grimontia hollisae CIP 101886] Length = 151 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 12/137 (8%) Query: 6 FYRFKNDWEYNLLVLLQD-----EY--EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58 FY L +L+ ++G +V + + ++++E LW +GF+P Sbjct: 7 FYLLDESHNNPSLRMLEKVCQLSALFCQQGMKVFITAADKPQAEAIDEALWQQPAEGFVP 66 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 H + EG Q V + + ++ L++ A + +VV + +D Sbjct: 67 HNLVG--EGPRGGAQ-VEIGWPGVR-HSGHRHVLINLAQEAATFAPSFAQVVDFVPCED- 121 Query: 119 GSLEWGRAHWRSLKNSG 135 + R ++ + +G Sbjct: 122 ALKQQARERYKIYRMAG 138 >gi|261855976|ref|YP_003263259.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus c2] gi|261836445|gb|ACX96212.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus c2] Length = 147 Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 12/142 (8%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M ++F+ + L + V V C + +S ++YLW +K D F Sbjct: 1 MSAVIFHLIDDPDTEAFWFHAAELCAQAAQAEHMVYVVCANLAHVESFDDYLWGYKPDAF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + + P+ L + ++++ + I V ++ +++ + Sbjct: 61 VPH----TADPEDIAHAPIFLGVDVA---AGGFDYVINLSGKPIERVADRIQLDELVDAN 113 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 + E RA WR + +G P Sbjct: 114 -PANREAARARWRDYQAAGVKP 134 >gi|52425612|ref|YP_088749.1| DNA polymerase III subunit chi [Mannheimia succiniciproducens MBEL55E] gi|52307664|gb|AAU38164.1| HolC protein [Mannheimia succiniciproducens MBEL55E] Length = 147 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 13/140 (9%) Query: 6 FYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 FY + E L D + GK+V + C +E +L+E LW + F+ Sbjct: 7 FYLIEKTQADNALSATEALACNLAADAWRLGKKVLIACETEEQALNLDEALWQRDAEQFV 66 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 PH + + P+ ++ N L+ + + V+ + + Sbjct: 67 PHNLS---GEITNYATPIEISWQGKR-NAQRRDLLISLQNNVPDYAQSFNHVIDFVPA-E 121 Query: 118 QGSLEWGRAHWRSLKNSGYA 137 + R ++ + G+ Sbjct: 122 EERKAVARERYKLYRQLGFE 141 >gi|90411868|ref|ZP_01219876.1| DNA polymerase III, chi subunit [Photobacterium profundum 3TCK] gi|90327126|gb|EAS43498.1| DNA polymerase III, chi subunit [Photobacterium profundum 3TCK] Length = 150 Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 13/143 (9%) Query: 1 MRTLLFY-----RFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY + D +Y L Y++G +V + ++ + L+EYLW + Sbjct: 1 MTHATFYIIEDKHLEADSDYLLHFSCHQAALSYQQGNKVYLLAENKAQAEQLDEYLWQQE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D F+PH + S PV + ++ L++ + +V+ Sbjct: 61 PDNFVPHNLIGEGPRGGS---PVEIGW-PGLRHSGRRGLLINLGQDTPNFAVTFPQVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135 + D+ + R +++ + +G Sbjct: 117 VPC-DENLKQLARERYKAYRLAG 138 >gi|160871770|ref|ZP_02061902.1| DNA polymerase III, chi subunit [Rickettsiella grylli] gi|159120569|gb|EDP45907.1| DNA polymerase III, chi subunit [Rickettsiella grylli] Length = 146 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 2 RTLLFYRFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 T+ FY ++ + L+ + + K++ +Q + +E LWT++ F+ Sbjct: 4 TTIDFYLLNTVFQEDRYRFSCRLIDKAFLQHKKIFIQVNTAEEGQRFDELLWTFRDISFI 63 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTS---TIRFLVDEASMHIGDVDYYEKVVFIIN 114 PH D LLT+ + N L++ ++ + +++ +++ Sbjct: 64 PHRYLEVDSSIDP-----LLTV-HIAVNKPVELHADILLNLSTRVPDYFSTFSRIIEVVS 117 Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136 +++ R ++ K Sbjct: 118 EENENK-NQSRQKYKFYKTQQC 138 >gi|284007684|emb|CBA73424.1| DNA polymerase III subunit chi [Arsenophonus nasoniae] Length = 149 Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + L + + GKRV + C + + L+E LW + Sbjct: 1 MKKATFYLIEQLSSQAELESHEWLACQLAAENWRMGKRVLIACEDQIQAEKLDEILWQRE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L + +++ L++ S + +V+ Sbjct: 61 PYQFVPHNLAGEGPRYGA---PVELCWPTKRGSSAR-DILINLQSTFADFATTFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + T D+ + R +++ +N G+ Sbjct: 117 VPT-DEHLKQLARERYKTYRNMGFN 140 >gi|197287275|ref|YP_002153147.1| DNA polymerase III subunit chi [Proteus mirabilis HI4320] gi|227357025|ref|ZP_03841396.1| DNA polymerase III, chi subunit [Proteus mirabilis ATCC 29906] gi|194684762|emb|CAR46789.1| DNA polymerase III, chi subunit [Proteus mirabilis HI4320] gi|227162828|gb|EEI47788.1| DNA polymerase III, chi subunit [Proteus mirabilis ATCC 29906] Length = 149 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++ E+ L + + GKRV + C S+ + L+E LW + Sbjct: 1 MKNATFYLMEHPSIHQDLQAHEWLACQLAAEHWRLGKRVLLVCDSQPQAELLDEALWARE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L++ S + +V+ Sbjct: 61 PHQFVPHNLAGEGPRYGA---PVELCWPGKRGNAPRDL-LINLQSQFADFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R ++ ++ G+ Sbjct: 117 VPI-DEQLKQLARERYKIYRSVGFT 140 >gi|62511383|gb|AAX84280.1| HolC [Xylella fastidiosa] gi|62511385|gb|AAX84281.1| HolC [Xylella fastidiosa] gi|62511387|gb|AAX84282.1| HolC [Xylella fastidiosa] gi|62511389|gb|AAX84283.1| HolC [Xylella fastidiosa] gi|62511391|gb|AAX84284.1| HolC [Xylella fastidiosa] gi|62511393|gb|AAX84285.1| HolC [Xylella fastidiosa] Length = 114 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 7/121 (5%) Query: 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70 + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 1 KKPLQLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD-- 58 Query: 71 SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130 PVL+ + + R LV D E+V+ ++ D + E R W+ Sbjct: 59 DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWKH 113 Query: 131 L 131 Sbjct: 114 Y 114 >gi|303257375|ref|ZP_07343389.1| DNA polymerase III, chi subunit [Burkholderiales bacterium 1_1_47] gi|302860866|gb|EFL83943.1| DNA polymerase III, chi subunit [Burkholderiales bacterium 1_1_47] Length = 158 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 6/143 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M L F+ + + ++ V ++ + LW ++ F+PHG Sbjct: 17 MSDLAFHTGVENRFKYACLAMRKAQRLNVSACVLLETDDELRRFDNMLWAFEPTSFIPHG 76 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV-DEASMHI-GDVDYYEKVVFIINTDDQ 118 + V L+ + + + + L+ A + ++ + K++ I+ D Sbjct: 77 RPNTLDMQRGG---VALSTHAADLPDAELLVLLTHGAPIDTKALMERFPKIIDIV-GRDD 132 Query: 119 GSLEWGRAHWRSLKNSGYAPDVI 141 L GR + + K G P V+ Sbjct: 133 PELTEGRHRYVAYKRQGIEPTVV 155 >gi|198283965|ref|YP_002220286.1| DNA polymerase III subunit chi HolC [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665282|ref|YP_002426601.1| DNA polymerase III, chi subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248486|gb|ACH84079.1| DNA polymerase III chi subunit HolC [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517495|gb|ACK78081.1| DNA polymerase III, chi subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 141 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 16/146 (10%) Query: 1 MRTLLFYRFKNDWEYN------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKD 54 M FY + ++ ++ + C +L++ LWT++ Sbjct: 1 MPVASFYTLPPTLLTAHEQRRGMCRVIAKVWQVMGEADILCPDTEAGQTLDDLLWTFQAG 60 Query: 55 GFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 F+PH G +PV + + L + E+++ I Sbjct: 61 AFVPHARGAG--------EPVRIHENGAWPLQGKALVLC-GLDKLPAPLPPCERLIDFIP 111 Query: 115 TDDQGSLEWGRAHWRSLKNSGYAPDV 140 + + R +R LKN+G+ V Sbjct: 112 VA-EQLRGFARERYRQLKNAGFTMQV 136 >gi|299771882|ref|YP_003733908.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter sp. DR1] gi|298701970|gb|ADI92535.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter sp. DR1] Length = 135 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + +K ++ C +++ L+E LW + F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDMQLQQMLDERLWEFDPVSFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HGVD D S+ QP+ + N N + VD++ ++ I+ + Sbjct: 61 AHGVDQTDAAVCISAKQPLEQGLLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130 >gi|322834558|ref|YP_004214585.1| DNA-directed DNA polymerase [Rahnella sp. Y9602] gi|321169759|gb|ADW75458.1| DNA-directed DNA polymerase [Rahnella sp. Y9602] Length = 161 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKND-------WEYNLLVLLQ-DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ F+ L L+ + Y GKRV + C ++ + L+E LW + Sbjct: 1 MKQATFFLLDAPDASGELSSHEALACLVAAERYRMGKRVLLACEDQKQAERLDEALWQRE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+PH + + PV L N L+ + +VV Sbjct: 61 PNHFVPHNLAGEGPRFGA---PVELCWPGKRGNAPRDL-LISLLPEFADFATAFHEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + + + R +++ ++ G++ Sbjct: 117 VP-YEDSLKQLARERYKAYRSVGFS 140 >gi|293610037|ref|ZP_06692338.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827269|gb|EFF85633.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 135 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + +K ++ C +++ +L+E LW + F+ Sbjct: 1 MAKVNFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDVQLQQTLDERLWDFDPASFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HG+D + S+ QP+ + N N + VD++ ++ I+ + Sbjct: 61 AHGIDQAEAAVCISAKQPLEQGLLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130 >gi|270265130|ref|ZP_06193393.1| DNA polymerase III, chi subunit [Serratia odorifera 4Rx13] gi|270041064|gb|EFA14165.1| DNA polymerase III, chi subunit [Serratia odorifera 4Rx13] Length = 150 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GKRV + C S+ L+E LW F+PH + EG PV L Sbjct: 34 WRSGKRVLIACESQEQAQRLDEALWQRDPHQFVPHNLAG--EGPHYGA-PVELCWPGKRG 90 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N+ L+ + +VV + + + R +++ ++ G+ Sbjct: 91 NSPRDL-LIALLPQFADFATAFHEVVDFVP-YEDTLKQLARDRYKAYRSVGF 140 >gi|62511401|gb|AAX84289.1| HolC [Xylella fastidiosa] Length = 114 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%) Query: 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDF 69 + + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 1 EKPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD- 58 Query: 70 SSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129 PVL+ + + R LV D E+V+ ++ D + E R W+ Sbjct: 59 -DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWK 112 Query: 130 SL 131 Sbjct: 113 HY 114 >gi|85713128|ref|ZP_01044161.1| DNA polymerase III chi subunit [Idiomarina baltica OS145] gi|85693044|gb|EAQ31009.1| DNA polymerase III chi subunit [Idiomarina baltica OS145] Length = 148 Score = 67.1 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 8/140 (5%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYE----KGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + F+ + E L+ D+ + +++ V C ++ + +E LW DGF Sbjct: 1 MPSATFFLVQTTDEDEKNNLICDKIADLFRQYRKLLVVCEDQQQAELFDELLWQRPADGF 60 Query: 57 LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 +PH + + PV L+ T L + AS + + ++ Sbjct: 61 IPHALVGEA---LPNGAPVTLSWRQSEQQPRTGMALFNLASQVPEIAQRSQHIFDLVPA- 116 Query: 117 DQGSLEWGRAHWRSLKNSGY 136 + R ++ + G Sbjct: 117 PEDEKAVARERYKHYRARGC 136 >gi|157368806|ref|YP_001476795.1| DNA polymerase III subunit chi [Serratia proteamaculans 568] gi|157320570|gb|ABV39667.1| DNA-directed DNA polymerase [Serratia proteamaculans 568] Length = 149 Score = 66.7 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GKRV + C S+ L+E LW F+PH + EG PV L Sbjct: 33 WRSGKRVLIACESQEQAQRLDEALWQRDPHQFVPHNLAG--EGPHYGA-PVELCWPGKRG 89 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N+ L+ + +VV + + + R +++ ++ G+ Sbjct: 90 NSPRDL-LIALLPQFADFATAFHEVVDFVP-YEDTLKQLARDRYKAYRSVGF 139 >gi|285019434|ref|YP_003377145.1| DNA polymerase III subunit chi protein [Xanthomonas albilineans GPE PC73] gi|283474652|emb|CBA17151.1| probable dna polymerase III subunit chi protein [Xanthomonas albilineans] Length = 140 Score = 66.7 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 12/137 (8%) Query: 6 FYRFKNDWEYNLL-----VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 FY L + + V + L+E LW + D ++PH Sbjct: 5 FYLIAKPRFLTAPLRLVCELARKANDANLWTLVLARDLAQAEELDELLWAFDDDAYIPHQ 64 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 + D + + VL+ + + R LV + E+V+ ++ D + Sbjct: 65 IAGADADEEEAQ--VLIAPPEV---DAASRPLVINLR-DAPYLGTCERVLEVVPA-DLSA 117 Query: 121 LEWGRAHWRSLKNSGYA 137 E R W+ K GYA Sbjct: 118 REPLRERWKQYKTQGYA 134 >gi|226329631|ref|ZP_03805149.1| hypothetical protein PROPEN_03541 [Proteus penneri ATCC 35198] gi|225202817|gb|EEG85171.1| hypothetical protein PROPEN_03541 [Proteus penneri ATCC 35198] Length = 149 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%) Query: 1 MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ++ E+ L + + GKR+ + C S+ + L+E LW + Sbjct: 1 MKNATFYLMEHPSIHDDLQAHEWLACQLTAEHWRLGKRILLVCESQAQAELLDEALWARE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + + PV L N L++ S + + +V+ Sbjct: 61 PHQFVPHNLAGEGPRYGA---PVELCWPGKRGNAPRDL-LINLQSQFVDFATAFHEVIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + D+ + R ++ ++ G+ Sbjct: 117 VPI-DEQLKQLARERYKIYRSVGFT 140 >gi|297621270|ref|YP_003709407.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU 86-1044] gi|297376571|gb|ADI38401.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU 86-1044] Length = 142 Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 RV + SE L+++LW K+GFLPH V D +++T N N + I Sbjct: 36 RVLITVPSETAATYLDDFLWKQPKEGFLPHSVSTQACSDE-----IVITTKQENLNQAEI 90 Query: 90 RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 L++ S ++ V + + + E +++ + SG Sbjct: 91 --LINLCSEFSPIAGQFKTVFELWDETNALRREQSEKKFKAYEASG 134 >gi|325124202|gb|ADY83725.1| DNA polymerase III, chi subunit [Acinetobacter calcoaceticus PHEA-2] Length = 135 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + +K ++ C +++ +L+E LW + F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDVQLQQTLDERLWDFDPASFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HG+D + S+ QP+ + N N + VD++ ++ I+ + Sbjct: 61 AHGIDQAEAAVCISAKQPLEQGLLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130 >gi|62511395|gb|AAX84286.1| HolC [Xylella fastidiosa] gi|62511397|gb|AAX84287.1| HolC [Xylella fastidiosa] gi|62511399|gb|AAX84288.1| HolC [Xylella fastidiosa] gi|62511405|gb|AAX84291.1| HolC [Xylella fastidiosa] gi|62511407|gb|AAX84292.1| HolC [Xylella fastidiosa] gi|62511409|gb|AAX84293.1| HolC [Xylella fastidiosa] gi|62511411|gb|AAX84294.1| HolC [Xylella fastidiosa] gi|62511413|gb|AAX84295.1| HolC [Xylella fastidiosa] Length = 114 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%) Query: 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDF 69 + + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 1 EKPL-QLVCELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD- 58 Query: 70 SSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129 PVL+ + + R LV D E+V+ ++ D + E R W+ Sbjct: 59 -DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWK 112 Query: 130 SL 131 Sbjct: 113 HY 114 >gi|62511403|gb|AAX84290.1| HolC [Xylella fastidiosa] Length = 107 Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 7/114 (6%) Query: 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 L++ Y+ + + + ++L++ LW + D ++PH + DE D PVL+ Sbjct: 1 CELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD--DITPVLI 58 Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSL 131 + + R LV D E+V+ ++ D + E R W+ Sbjct: 59 ATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWKHY 107 >gi|169634644|ref|YP_001708380.1| DNA polymerase III, chi subunit [Acinetobacter baumannii SDF] gi|169153436|emb|CAP02578.1| DNA polymerase III, chi subunit [Acinetobacter baumannii] Length = 135 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + K ++ C +++ +L+E LW++ F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPTSFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HGVD D S+ QP N N + V+++ ++ I+ + Sbjct: 61 AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HTLEQVNHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130 >gi|329295901|ref|ZP_08253237.1| DNA polymerase III subunit chi [Plautia stali symbiont] Length = 152 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70 + E + L + GKR+ + C E+ + L+E LW + F+PH + + Sbjct: 19 SAIEALVCDLAASRWRDGKRILIACEDEQQANRLDEALWQRPANAFVPHNLAGEGPRYGA 78 Query: 71 SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130 PV L ++ L+ + +V+ + ++ + R +++ Sbjct: 79 ---PVELAWPQRR-GSAPRDLLISLLPQFADFATGFHEVID-FVSYEESLKQLARDRYKA 133 Query: 131 LKNSGY 136 ++ G+ Sbjct: 134 YRSVGF 139 >gi|260551092|ref|ZP_05825296.1| DNA polymerase III chi subunit [Acinetobacter sp. RUH2624] gi|260405859|gb|EEW99347.1| DNA polymerase III chi subunit [Acinetobacter sp. RUH2624] Length = 135 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + K + C +++ +L+E LW++ F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILLKHSNIWWYCPDVQLQQTLDEKLWSFDPTSFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HG+D D S+ QP N N + V+++ ++ I+ + Sbjct: 61 AHGIDQADAAVCISAKQPSEQGWLVFNFNN-----------HALEQVNHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130 >gi|239502073|ref|ZP_04661383.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AB900] Length = 135 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + K ++ C +++ +L+E LW++ F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPTSFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HGVD D S+ QP N N + VD++ ++ I+ + Sbjct: 61 AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130 >gi|62511365|gb|AAX84271.1| HolC [Xylella fastidiosa] gi|62511367|gb|AAX84272.1| HolC [Xylella fastidiosa] gi|62511369|gb|AAX84273.1| HolC [Xylella fastidiosa] gi|62511371|gb|AAX84274.1| HolC [Xylella fastidiosa] gi|62511373|gb|AAX84275.1| HolC [Xylella fastidiosa] gi|62511375|gb|AAX84276.1| HolC [Xylella fastidiosa] gi|62511377|gb|AAX84277.1| HolC [Xylella fastidiosa] gi|62511379|gb|AAX84278.1| HolC [Xylella fastidiosa] gi|62511381|gb|AAX84279.1| HolC [Xylella fastidiosa] Length = 114 Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%) Query: 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDF 69 + + L++ Y+ + + + ++L++ LW + D ++PH + DE D Sbjct: 1 EKPL-QLVCELVRKAYDTHQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD- 58 Query: 70 SSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129 PVL+ + + R LV D E+V+ ++ D + E R W+ Sbjct: 59 -DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWK 112 Query: 130 SL 131 Sbjct: 113 HY 114 >gi|320539291|ref|ZP_08038961.1| putative DNA polymerase III, chi subunit [Serratia symbiotica str. Tucson] gi|320030683|gb|EFW12692.1| putative DNA polymerase III, chi subunit [Serratia symbiotica str. Tucson] Length = 150 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 5/112 (4%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84 + GKR+ + C S+ L+E LW + F+PH + +S PV L Sbjct: 34 WRSGKRLLIACESQEQAQRLDEALWQREPHTFVPHNLAGEG---PNSGAPVELCWPGKRG 90 Query: 85 NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 N L+ + +VV + + + R +++ ++ G+ Sbjct: 91 NAPRDL-LIALQPQFADFATAFHQVVDFVP-YEDTLKQLARDRYKAYRSVGF 140 >gi|184156571|ref|YP_001844910.1| DNA polymerase III subunit chi [Acinetobacter baumannii ACICU] gi|260556397|ref|ZP_05828616.1| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 19606] gi|332874945|ref|ZP_08442796.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6014059] gi|183208165|gb|ACC55563.1| DNA polymerase III, chi subunit [Acinetobacter baumannii ACICU] gi|193076097|gb|ABO10701.2| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 17978] gi|260410452|gb|EEX03751.1| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 19606] gi|322506458|gb|ADX01912.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 1656-2] gi|323516337|gb|ADX90718.1| DNA polymerase III, chi subunit [Acinetobacter baumannii TCDC-AB0715] gi|332736888|gb|EGJ67864.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6014059] Length = 135 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + K ++ C +++ +L+E LW++ F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPTSFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HGVD D S+ QP N N + V+++ ++ I+ + Sbjct: 61 AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HALEQVNHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130 >gi|15602687|ref|NP_245759.1| DNA polymerase III subunit chi [Pasteurella multocida subsp. multocida str. Pm70] gi|12721129|gb|AAK02906.1| HolC [Pasteurella multocida subsp. multocida str. Pm70] Length = 142 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 7/132 (5%) Query: 6 FYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63 FY + E + GKRV + C +E+ ++E LW + D F+PH + Sbjct: 7 FYLLSEQAQMEKMACDFAASAWRLGKRVLIACETEQQALDIDEALWAREADEFVPHNLSG 66 Query: 64 GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123 + P+ ++ N L++ V + +V+ + ++ + Sbjct: 67 EV---TTYATPIEVSWKGKR-NAQRRDLLINLQVEVPDYVSSFTQVIDFVPVEEHLKV-L 121 Query: 124 GRAHWRSLKNSG 135 R ++ L+ G Sbjct: 122 ARERYKQLRQLG 133 >gi|282889633|ref|ZP_06298173.1| hypothetical protein pah_c003o020 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500460|gb|EFB42739.1| hypothetical protein pah_c003o020 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 151 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 R+ + +E LN LW ++ FLPH + E V +T S N N + + Sbjct: 37 RILIAAPNEEAARYLNALLWKQPEESFLPH---IWSESQTEEC--VAITFSKNNVNQAAV 91 Query: 90 RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 L++ + D +E++ + + D + + G Sbjct: 92 --LLNLCPSVHFEWDSFEQIYDLFDETDPEKQKASESRHVYYTEKGC 136 >gi|294637817|ref|ZP_06716090.1| DNA polymerase III, chi subunit [Edwardsiella tarda ATCC 23685] gi|291089057|gb|EFE21618.1| DNA polymerase III, chi subunit [Edwardsiella tarda ATCC 23685] Length = 137 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 5/125 (4%) Query: 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS 71 D E L + GKRV + C S+ + L+E LW F+PH + + Sbjct: 8 DVETLACELACQHWRAGKRVLLACASQAQAERLDEALWARDPQQFVPHNLAGEGPRFGA- 66 Query: 72 FQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSL 131 PV L+ ++ L+ + +V+ + + + R +++ Sbjct: 67 --PVELSW-PGKRGSAPRELLISLLPDFADFATAFHEVIDFVP-YEDALKQLARERYKAY 122 Query: 132 KNSGY 136 ++ G+ Sbjct: 123 RSVGF 127 >gi|261364475|ref|ZP_05977358.1| DNA polymerase III, chi subunit [Neisseria mucosa ATCC 25996] gi|288567403|gb|EFC88963.1| DNA polymerase III, chi subunit [Neisseria mucosa ATCC 25996] Length = 146 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M FY D L+ G ++ V L+ LW + F+PH Sbjct: 1 MPKATFYTHAADPAAFACRLIARAIRDGGQILVWSDFAETIRRLDRDLWQQIPESFIPHE 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY-EKVVFIINTDDQG 119 + D+ SS V L +++ + + +V+ I+ Sbjct: 61 IWQPDQ-PMSSETLVWLAFGDTLPVVPENTTVLNLSPDFWNEAPVIPARVLEIV-GSSLE 118 Query: 120 SLEWGRAHWRSLKNSGYAPD 139 L R + + K SG++ + Sbjct: 119 ELADARERFSAYKKSGFSIE 138 >gi|262280661|ref|ZP_06058444.1| DNA polymerase III chi subunit [Acinetobacter calcoaceticus RUH2202] gi|262257561|gb|EEY76296.1| DNA polymerase III chi subunit [Acinetobacter calcoaceticus RUH2202] Length = 135 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + +K ++ C +++ L+E LW + F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCQDVQLQQMLDERLWDFDPVSFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HGVD D S+ QP+ + N N + VD++ ++ I+ + Sbjct: 61 AHGVDQTDAAVCISAKQPLEQGLLVFNFNN-----------HALDQVDHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130 >gi|62361810|gb|AAX81441.1| HolC [Xylella fastidiosa] Length = 106 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 19 VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 L++ Y+ + + + ++L++ LW + D ++PH + DE D PVL+ Sbjct: 1 ELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD--DITPVLIA 58 Query: 79 ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSL 131 + + R LV D E+V+ ++ D + E R W+ Sbjct: 59 TPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWKHY 106 >gi|169797505|ref|YP_001715298.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AYE] gi|213155681|ref|YP_002317726.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AB0057] gi|215484940|ref|YP_002327181.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter baumannii AB307-0294] gi|301346209|ref|ZP_07226950.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter baumannii AB056] gi|301512958|ref|ZP_07238195.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter baumannii AB058] gi|301595089|ref|ZP_07240097.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter baumannii AB059] gi|332851505|ref|ZP_08433502.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013150] gi|332866795|ref|ZP_08437199.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013113] gi|169150432|emb|CAM88329.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AYE] gi|213054841|gb|ACJ39743.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AB0057] gi|213988348|gb|ACJ58647.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter baumannii AB307-0294] gi|332729958|gb|EGJ61289.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013150] gi|332734403|gb|EGJ65523.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013113] Length = 135 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + K ++ C +++ +L+E LW++ F+ Sbjct: 1 MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPISFI 60 Query: 58 PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116 HGVD D S+ QP N N + V+++ ++ I+ + Sbjct: 61 AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HALEQVNHFSHIIEIVE-N 108 Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138 ++ + + GR ++ + G P Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130 >gi|121611820|ref|YP_999627.1| DNA polymerase III chi subunit, HolC [Verminephrobacter eiseniae EF01-2] gi|121556460|gb|ABM60609.1| DNA polymerase III chi subunit, HolC [Verminephrobacter eiseniae EF01-2] Length = 144 Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 4/137 (2%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F F + + ++ V ++ +L+ LW + F+ H Sbjct: 1 MTEVAF-HFNAPDKLAYACRFARKVQRSDARLVIAAPAQMLAALDRMLWALEPQDFVAHC 59 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 D D+ ++ + ++ +T+ L++ + ++++V +++ D Sbjct: 60 RDDADQELLAAS---AVLLAQDARSTAHHEVLLNLQPQVPQGFERFDRLVEVVSAQDPAD 116 Query: 121 LEWGRAHWRSLKNSGYA 137 RA WR + G A Sbjct: 117 RTEARARWRHYASLGLA 133 >gi|90408706|ref|ZP_01216855.1| DNA polymerase III, chi subunit [Psychromonas sp. CNPT3] gi|90310188|gb|EAS38324.1| DNA polymerase III, chi subunit [Psychromonas sp. CNPT3] Length = 155 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 16/145 (11%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDE-------YEKGKRVSVQCGSERVRDSLNEYLWTWKK 53 M + FY D +N+ + Y++ +V + ++ ++EYLW + Sbjct: 1 MSQVTFYILAEDQTHNIPAQIAQACHLAAFYYQQQTKVFIYTENKEDAFIVDEYLWQFDG 60 Query: 54 DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR-FLVDEASMHIGDVDYYEKVVFI 112 D F+ H + S PV ++ +R L++ +S +++++ Sbjct: 61 DSFVAHNLMGEGPRFGS---PVEISWEPTT----QVRPVLINLSSEVPEFSKNFKQIIDF 113 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ R + + K G+ Sbjct: 114 VPV-EETLKMTARRRYSAYKKLGHT 137 >gi|119944174|ref|YP_941854.1| DNA polymerase III chi subunit, HolC [Psychromonas ingrahamii 37] gi|119862778|gb|ABM02255.1| DNA polymerase III chi subunit, HolC [Psychromonas ingrahamii 37] Length = 160 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 17/145 (11%) Query: 1 MRTLLFYRFKNDWEYN----------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 M ++FY F + + + + Y + K+V + S+ +++EYLW Sbjct: 1 MSQVVFYVFTTEEKSSSVAISAHFAYACRIAAFFYAQNKKVFIYTDSKEDAFAVDEYLWQ 60 Query: 51 WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 + D F+PH + PV ++ L++ + ++K++ Sbjct: 61 FDGDSFVPHNLLGEG---PKFGTPVEISWQVPLHPRP---ILINLSQKTPDFAINFQKII 114 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135 + + + R + + + G Sbjct: 115 DFVPFPEPQKI-AARIRYSTYRKMG 138 >gi|71891826|ref|YP_277555.1| DNA polymerase III, chi subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795932|gb|AAZ40683.1| DNA polymerase III, chi subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 150 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 14/150 (9%) Query: 1 MRTLLFYRFKNDWEYN-----LLVLLQDEYEKGKR----VSVQCGSERVRDSLNEYLWTW 51 M+ +FY ++E + L R + V C +E +++ LWT+ Sbjct: 1 MKRSIFYLLSQEFEQKNRPNYIEQLACKLISTQWRSGKTILVTCENEHQATKIDKILWTF 60 Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 ++ F+PH + G P+++ S + L++ ++ + +++ Sbjct: 61 DQNSFVPHNLF----GKTIQHAPIVIYWSQCCYDNQPKDLLINLMLKNMNFFLNFNEIID 116 Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + D +W R +RS K +G+ V+ Sbjct: 117 FVPISD-ILKKWARYRYRSYKRNGFQVSVV 145 >gi|330938930|gb|EGH42429.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. pisi str. 1704B] Length = 76 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%) Query: 1 MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + FY + L + + G +V + C R+ L+ LW ++ + F Sbjct: 1 MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60 Query: 57 LPHGVDVGDEGD 68 LPHG D Sbjct: 61 LPHGDAESDHDA 72 >gi|56461049|ref|YP_156330.1| DNA polymerase III chi subunit [Idiomarina loihiensis L2TR] gi|56180059|gb|AAV82781.1| DNA polymerase III chi subunit [Idiomarina loihiensis L2TR] Length = 149 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 33 VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA--NTSTIR 90 V +++ ++L+E LW D F+PH + + PV +A N Sbjct: 37 VWARNQQQAEALDELLWQQPSDAFIPHNLHGEGPATGA---PVEFCWPEADAVKNRPG-Y 92 Query: 91 FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 L + A +++ I+ DD G + R ++ + G Sbjct: 93 ALFNLAEEIPVQAQQSQQLYDIVPADDNGK-KTARERYKHYRARGC 137 >gi|304311787|ref|YP_003811385.1| DNA polymerase III chi subunit [gamma proteobacterium HdN1] gi|301797520|emb|CBL45740.1| DNA polymerase III chi subunit [gamma proteobacterium HdN1] Length = 153 Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 5/119 (4%) Query: 19 VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78 L+ Y G + +E +E LW + ++ FL H + Sbjct: 27 RLIDKVYHLGMSLFTLLPNEEAAAGFSERLWAYSQESFLAHDLGNAQTAARLRVD----W 82 Query: 79 ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 + ++T L++ A + +V I+ D + E R ++R+ K GY Sbjct: 83 KALAPSDTVQYDVLINLAGPVPEFHTRFRRVTEIVPG-DTKAREQVRENYRAYKEKGYP 140 >gi|50083530|ref|YP_045040.1| DNA polymerase III chi [Acinetobacter sp. ADP1] gi|49529506|emb|CAG67218.1| DNA polymerase III, chi subunit [Acinetobacter sp. ADP1] Length = 135 Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 14/141 (9%) Query: 1 MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57 M + FY F+ E + L + ++ +++ C ++ L+E LWT+ ++ F+ Sbjct: 1 MTKISFYLFETSQERQVESACRLCRKLVKQQQKLWWFCPDLELQKQLDERLWTFDRESFI 60 Query: 58 PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 HG+D QP S + TS + + + + + + ++ II + Sbjct: 61 THGID----------QPHAFVCISSHLPTSKEWIVFNFNNQALEQMSEFSHIIEIIE-NT 109 Query: 118 QGSLEWGRAHWRSLKNSGYAP 138 + + + GR ++ + G P Sbjct: 110 ESAKQIGREKFKLYRRLGVEP 130 >gi|258625831|ref|ZP_05720710.1| DNA polymerase III subunit chi [Vibrio mimicus VM603] gi|258582069|gb|EEW06939.1| DNA polymerase III subunit chi [Vibrio mimicus VM603] Length = 149 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D + L + +G R+ +QC ++ + L E W + Sbjct: 1 MPTATFYLISPDSAQSTPAGFAQYVLYLTRHFVAQGARIYLQCQDKQHAEQLAERFWQVE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D FL H + ++ + + +S + + ++ A + +VV Sbjct: 61 PDQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139 >gi|94677032|ref|YP_588735.1| DNA polymerase III, chi subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220182|gb|ABF14341.1| DNA polymerase III, chi subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 154 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ + FYR E L+ + GKR+ + C S ++ LW Sbjct: 1 MKKVTFYRLNKKTIPNWLIAMEQLAYHLVVINWRAGKRILIACESNDQAKKIDHGLWAKT 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+PH + D + PV + N + +++ + + +++ Sbjct: 61 PTAFIPHNLVGEGPKDGA---PVEICW-PHQYNYTPRDLIINLLPKCTDFIFSFNEIIDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 I D++ + R +++ +N G+ Sbjct: 117 IP-DEEFFKQLARNRYKAYRNVGF 139 >gi|229507440|ref|ZP_04396945.1| DNA polymerase III chi subunit [Vibrio cholerae BX 330286] gi|229509635|ref|ZP_04399116.1| DNA polymerase III chi subunit [Vibrio cholerae B33] gi|229516760|ref|ZP_04406206.1| DNA polymerase III chi subunit [Vibrio cholerae RC9] gi|229606946|ref|YP_002877594.1| DNA polymerase III subunit chi [Vibrio cholerae MJ-1236] gi|229345823|gb|EEO10795.1| DNA polymerase III chi subunit [Vibrio cholerae RC9] gi|229353109|gb|EEO18048.1| DNA polymerase III chi subunit [Vibrio cholerae B33] gi|229354945|gb|EEO19866.1| DNA polymerase III chi subunit [Vibrio cholerae BX 330286] gi|229369601|gb|ACQ60024.1| DNA polymerase III chi subunit [Vibrio cholerae MJ-1236] Length = 154 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEY--------EKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L +G R+ +QC + + L E W + Sbjct: 6 MPTATFYLISRDSAQATPEGLAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 65 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 66 PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 121 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 122 VPCA-ENAKQLARERYKLYRQAGY 144 >gi|332976304|gb|EGK13161.1| DNA-directed DNA polymerase III chi subunit [Psychrobacter sp. 1501(2011)] Length = 163 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 10/111 (9%) Query: 32 SVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QPV-LLTISSLNANTSTI 89 + + L+ +LW++ F+PH + + +E + PV LL+ N + Sbjct: 51 VIVDDQTQRLSDLDAHLWSFDATSFVPHTLILDNEPKNEALSAPVTLLSTLPPNFDG--- 107 Query: 90 RFLVDEASMHIGDVDYY---EKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 +++ A + ++V+ II T D+ S + GR +R ++ G+ Sbjct: 108 -VVLNLAPTALPLSTGNILPDRVLEII-TPDEVSKQQGRDKYRIYRDLGFE 156 >gi|258622806|ref|ZP_05717824.1| DNA polymerase III subunit chi [Vibrio mimicus VM573] gi|258584994|gb|EEW09725.1| DNA polymerase III subunit chi [Vibrio mimicus VM573] Length = 167 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV-------LLQDEYE-KGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D + L + +G R+ +QC ++ + L E W + Sbjct: 19 MPTATFYLISPDSAQSTPTGFAEYVLYLTRHFASQGARIYLQCQDKQHAEQLAERFWQVE 78 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 D FL H + ++ + + +S + + ++ A + +VV Sbjct: 79 PDQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 134 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 135 VPCA-ENAKQLARERYKLYRQAGY 157 >gi|15642498|ref|NP_232131.1| DNA polymerase III subunit chi [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591519|ref|ZP_01678784.1| DNA polymerase III, chi subunit [Vibrio cholerae 2740-80] gi|153820411|ref|ZP_01973078.1| DNA polymerase III, chi subunit [Vibrio cholerae NCTC 8457] gi|153822422|ref|ZP_01975089.1| DNA polymerase III, chi subunit [Vibrio cholerae B33] gi|227082621|ref|YP_002811172.1| DNA polymerase III, chi subunit [Vibrio cholerae M66-2] gi|254851047|ref|ZP_05240397.1| DNA polymerase III [Vibrio cholerae MO10] gi|255744519|ref|ZP_05418471.1| DNA polymerase III chi subunit [Vibrio cholera CIRS 101] gi|262154657|ref|ZP_06028783.1| DNA polymerase III chi subunit [Vibrio cholerae INDRE 91/1] gi|298500667|ref|ZP_07010471.1| DNA polymerase III subunit chi [Vibrio cholerae MAK 757] gi|9657084|gb|AAF95644.1| DNA polymerase III, chi subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546627|gb|EAX56817.1| DNA polymerase III, chi subunit [Vibrio cholerae 2740-80] gi|126509047|gb|EAZ71641.1| DNA polymerase III, chi subunit [Vibrio cholerae NCTC 8457] gi|126520065|gb|EAZ77288.1| DNA polymerase III, chi subunit [Vibrio cholerae B33] gi|227010509|gb|ACP06721.1| DNA polymerase III, chi subunit [Vibrio cholerae M66-2] gi|254846752|gb|EET25166.1| DNA polymerase III [Vibrio cholerae MO10] gi|255738044|gb|EET93437.1| DNA polymerase III chi subunit [Vibrio cholera CIRS 101] gi|262030497|gb|EEY49135.1| DNA polymerase III chi subunit [Vibrio cholerae INDRE 91/1] gi|297540836|gb|EFH76893.1| DNA polymerase III subunit chi [Vibrio cholerae MAK 757] Length = 149 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEY--------EKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L +G R+ +QC + + L E W + Sbjct: 1 MPTATFYLISRDSAQATPEGLAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 61 PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139 >gi|261211064|ref|ZP_05925353.1| DNA polymerase III chi subunit [Vibrio sp. RC341] gi|262401793|ref|ZP_06078358.1| DNA polymerase III chi subunit [Vibrio sp. RC586] gi|297581349|ref|ZP_06943272.1| DNA polymerase III subunit chi [Vibrio cholerae RC385] gi|260839565|gb|EEX66176.1| DNA polymerase III chi subunit [Vibrio sp. RC341] gi|262351765|gb|EEZ00896.1| DNA polymerase III chi subunit [Vibrio sp. RC586] gi|297534187|gb|EFH73025.1| DNA polymerase III subunit chi [Vibrio cholerae RC385] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L + +G R+ +QC ++ + L E W + Sbjct: 1 MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKQHAEQLAERFWQIE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 61 PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139 >gi|258544897|ref|ZP_05705131.1| DNA polymerase III, chi subunit [Cardiobacterium hominis ATCC 15826] gi|258519817|gb|EEV88676.1| DNA polymerase III, chi subunit [Cardiobacterium hominis ATCC 15826] Length = 152 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 7/106 (6%) Query: 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68 +N E L + ++ + + C E + L+ LW ++ D FL H Sbjct: 21 LENRLELA-CKLAEKAQQERLKTLIICADEHMAAQLDHALWHYRADSFLTH---CRSGDP 76 Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDY-YEKVVFII 113 + VLL + + L++ + D+ +V I+ Sbjct: 77 LEAEAAVLLAVPPERI--ARTDVLINLSQETAPDLPRDCARVFEIV 120 >gi|262170555|ref|ZP_06038233.1| DNA polymerase III chi subunit [Vibrio mimicus MB-451] gi|261891631|gb|EEY37617.1| DNA polymerase III chi subunit [Vibrio mimicus MB-451] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV-------LLQDEYE-KGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D + L + +G R+ +QC ++ + L E W + Sbjct: 1 MPTATFYLISPDSAQSTPTGFAEYVLYLTRHFASQGARIYLQCQDKQHAEQLAERFWQVE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 61 PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139 >gi|269966354|ref|ZP_06180440.1| DNA polymerase III subunit chi [Vibrio alginolyticus 40B] gi|269829031|gb|EEZ83279.1| DNA polymerase III subunit chi [Vibrio alginolyticus 40B] Length = 150 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 5/115 (4%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G +V + C + + L E W D F+ H + VG+ +++ + + + N Sbjct: 36 QGAKVYLNCQDKPHAEQLAEAFWQVDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPNW 92 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 93 NRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145 >gi|253997569|ref|YP_003049633.1| DNA polymerase III chi subunit HolC [Methylotenera mobilis JLW8] gi|253984248|gb|ACT49106.1| DNA polymerase III chi subunit HolC [Methylotenera mobilis JLW8] Length = 140 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 6/136 (4%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F+ D + L K +++++ + + ++ LW FLP Sbjct: 1 MTRVEFFFNVPDKLAKVAELCDRAVAKRRQLTIFTQDDVMSANVQALLWQHSATSFLPSA 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120 E D V + + L++ + H ++ +V ++ D Sbjct: 61 YPGSPEQDD-----VAIIVDKEGTQLLQDDILINLKAEHPPFFSRFKYLVELV-GADDAD 114 Query: 121 LEWGRAHWRSLKNSGY 136 RA ++ ++ GY Sbjct: 115 KALARARYKFYRDRGY 130 >gi|23009874|ref|ZP_00050762.1| hypothetical protein Magn03004711 [Magnetospirillum magnetotacticum MS-1] Length = 60 Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 93 VDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 ++ A + D Y+++ + + D +L R WR K +G+A Sbjct: 1 MEGADL-PEDAQSYQRICILFDGTDTDALLRAREQWRGAKAAGHA 44 >gi|269963276|ref|ZP_06177608.1| DNA polymerase III subunit chi [Vibrio harveyi 1DA3] gi|269831991|gb|EEZ86118.1| DNA polymerase III subunit chi [Vibrio harveyi 1DA3] Length = 150 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + N Sbjct: 35 RQGAKVYLNCQDKPHAEQLAEAFWQIDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPN 91 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 92 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145 >gi|153834582|ref|ZP_01987249.1| DNA polymerase III subunit chi [Vibrio harveyi HY01] gi|148869025|gb|EDL68070.1| DNA polymerase III subunit chi [Vibrio harveyi HY01] Length = 149 Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + N Sbjct: 34 RQGAKVYLNCQDKPHAEQLAEAFWQIDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPN 90 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 91 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|156975870|ref|YP_001446777.1| DNA polymerase III subunit chi [Vibrio harveyi ATCC BAA-1116] gi|156527464|gb|ABU72550.1| hypothetical protein VIBHAR_03636 [Vibrio harveyi ATCC BAA-1116] Length = 150 Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + N Sbjct: 35 RQGAKVYLNCKDKPHAEQLAEAFWQIDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPN 91 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 92 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145 >gi|229521567|ref|ZP_04410985.1| DNA polymerase III chi subunit [Vibrio cholerae TM 11079-80] gi|229524485|ref|ZP_04413890.1| DNA polymerase III chi subunit [Vibrio cholerae bv. albensis VL426] gi|229527562|ref|ZP_04416954.1| DNA polymerase III chi subunit [Vibrio cholerae 12129(1)] gi|229335194|gb|EEO00679.1| DNA polymerase III chi subunit [Vibrio cholerae 12129(1)] gi|229338066|gb|EEO03083.1| DNA polymerase III chi subunit [Vibrio cholerae bv. albensis VL426] gi|229341161|gb|EEO06165.1| DNA polymerase III chi subunit [Vibrio cholerae TM 11079-80] gi|327484990|gb|AEA79397.1| DNA polymerase III chi subunit [Vibrio cholerae LMA3894-4] Length = 154 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L + +G R+ +QC + + L E W + Sbjct: 6 MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 65 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 66 PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 121 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 122 VPCA-ENAKQLARERYKLYRQAGY 144 >gi|147674807|ref|YP_001218000.1| DNA polymerase III subunit chi [Vibrio cholerae O395] gi|153215719|ref|ZP_01950100.1| DNA polymerase III, chi subunit [Vibrio cholerae 1587] gi|153801098|ref|ZP_01955684.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-3] gi|153827687|ref|ZP_01980354.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-2] gi|153831431|ref|ZP_01984098.1| DNA polymerase III, chi subunit [Vibrio cholerae 623-39] gi|254225901|ref|ZP_04919503.1| DNA polymerase III, chi subunit [Vibrio cholerae V51] gi|254291420|ref|ZP_04962212.1| DNA polymerase III, chi subunit [Vibrio cholerae AM-19226] gi|262167533|ref|ZP_06035238.1| DNA polymerase III chi subunit [Vibrio cholerae RC27] gi|124114637|gb|EAY33457.1| DNA polymerase III, chi subunit [Vibrio cholerae 1587] gi|124123331|gb|EAY42074.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-3] gi|125621527|gb|EAZ49859.1| DNA polymerase III, chi subunit [Vibrio cholerae V51] gi|146316690|gb|ABQ21229.1| DNA polymerase III, chi subunit [Vibrio cholerae O395] gi|148873088|gb|EDL71223.1| DNA polymerase III, chi subunit [Vibrio cholerae 623-39] gi|149737835|gb|EDM52740.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-2] gi|150422610|gb|EDN14565.1| DNA polymerase III, chi subunit [Vibrio cholerae AM-19226] gi|227014392|gb|ACP10602.1| DNA polymerase III, chi subunit [Vibrio cholerae O395] gi|262023986|gb|EEY42682.1| DNA polymerase III chi subunit [Vibrio cholerae RC27] Length = 149 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L + +G R+ +QC + + L E W + Sbjct: 1 MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 61 PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139 >gi|262373932|ref|ZP_06067209.1| DNA polymerase III chi subunit [Acinetobacter junii SH205] gi|262310943|gb|EEY92030.1| DNA polymerase III chi subunit [Acinetobacter junii SH205] Length = 138 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 14/140 (10%) Query: 2 RTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58 + FY F+N E + L + + +V C + +++ L+E LWT+ F+P Sbjct: 5 AQISFYLFENSTERQVESACRLCRKILNQHPKVWWYCDNAEMQNELDEKLWTFDPTSFIP 64 Query: 59 HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 HG+ + + V ++ ++N + + A + + + I +++ Sbjct: 65 HGIHLENSA-------VCISEELPSSNDWIVFNFNNHALEQTQEF----RHIIEIIENNE 113 Query: 119 GSLEWGRAHWRSLKNSGYAP 138 + + GR ++ + G AP Sbjct: 114 IAKQIGREKFKMYRRLGIAP 133 >gi|229513429|ref|ZP_04402893.1| DNA polymerase III chi subunit [Vibrio cholerae TMA 21] gi|229349306|gb|EEO14262.1| DNA polymerase III chi subunit [Vibrio cholerae TMA 21] Length = 154 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L + +G R+ +QC + + L E W + Sbjct: 6 MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 65 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 66 PEQFLAHNLVGEGPKFGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 121 Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136 + + + + R ++ + +GY Sbjct: 122 VPCA-ENAKQLARERYKLYRQAGY 144 >gi|163803710|ref|ZP_02197570.1| DNA polymerase III subunit chi [Vibrio sp. AND4] gi|159172493|gb|EDP57358.1| DNA polymerase III subunit chi [Vibrio sp. AND4] Length = 149 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C ++ + L E W D F H + VG+ +++ + + + + N Sbjct: 34 RQGAKVYLNCQNKPHAEQLAEAFWQVDADTFTAHNL-VGEGPKYATN--IEIGHNGVKPN 90 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 + ++ A + + +VV + ++ + + R ++ + +GY Sbjct: 91 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARQRYKIYRQAGY 139 >gi|149190548|ref|ZP_01868818.1| DNA polymerase III subunit chi [Vibrio shilonii AK1] gi|148835672|gb|EDL52639.1| DNA polymerase III subunit chi [Vibrio shilonii AK1] Length = 151 Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 29/157 (18%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQ----------------CGSERVRDSL 44 M T FY D E ++G V C + + L Sbjct: 1 MNTATFYIINEDSEQ--------ASQQGWFAYVHFLCRHFTAQGAKLYINCSDKAEAELL 52 Query: 45 NEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVD 104 EY W + F+ H + + PV + L + + ++ A+ H Sbjct: 53 AEYFWQVTPEQFIAHNLIGEG---PKNGTPVEIGHEGLKPSWNRQL-AINLANSHATFAQ 108 Query: 105 YYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + +VV + ++ + + R ++ + +GY I Sbjct: 109 SFGQVVDFVPC-EEKAKQTARERYKIYRQAGYQLQTI 144 >gi|328471444|gb|EGF42339.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus 10329] Length = 149 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + + Sbjct: 34 RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 90 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 91 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|308094748|ref|ZP_05891701.2| DNA polymerase III subunit chi [Vibrio parahaemolyticus AN-5034] gi|308095227|ref|ZP_05904191.2| DNA polymerase III subunit chi [Vibrio parahaemolyticus Peru-466] gi|308126228|ref|ZP_05908662.2| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ4037] gi|308087446|gb|EFO37141.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus Peru-466] gi|308093154|gb|EFO42849.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AN-5034] gi|308107552|gb|EFO45092.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ4037] Length = 150 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + + Sbjct: 35 RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 91 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 92 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145 >gi|28899419|ref|NP_799024.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus RIMD 2210633] gi|28807655|dbj|BAC60908.1| DNA polymerase III, chi subunit [Vibrio parahaemolyticus RIMD 2210633] Length = 149 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + + Sbjct: 34 RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 90 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 91 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|213025672|ref|ZP_03340119.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 103 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 11 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 70 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + F+PH + + PV + Sbjct: 71 AESFVPHNLAGEGPRGGA---PVEIAWPQ 96 >gi|153840105|ref|ZP_01992772.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ3810] gi|149746290|gb|EDM57362.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ3810] Length = 147 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + + Sbjct: 32 RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 88 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 89 WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 142 >gi|260779403|ref|ZP_05888294.1| DNA polymerase III chi subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604493|gb|EEX30793.1| DNA polymerase III chi subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 149 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 13/149 (8%) Query: 1 MRTLLFYRF--------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY + +E +L L ++G +V + C ++ + L E W Sbjct: 1 MPNATFYIIKPDSPQANRQGFEQYVLFLAGHFAKQGAKVYLHCHDKQHAEQLAECFWQVD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + +L H + + + + + + + ++ A + + +VV Sbjct: 61 AEQYLAHNLTGEGPKYGTG---IEIGYQGVKPSWNRQLV-INLAENETTFANKFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ + + R ++ + +GY I Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|33519517|ref|NP_878349.1| DNA polymerase III, chi subunit [Candidatus Blochmannia floridanus] gi|33517180|emb|CAD83562.1| DNA polymerase III, chi subunit [Candidatus Blochmannia floridanus] Length = 153 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Query: 6 FYRFKNDW---EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 F KND E + L + + GK + + C + +NE LW ++K+ FLPHG+ Sbjct: 13 FIHHKNDLNTIEQLVCHLTKIHWRLGKTILITCDTHDQAKKINEALWNFEKNSFLPHGLF 72 Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122 + + P+ + S + L++ + + +++ + ++ + Sbjct: 73 SKNTYNI----PITIYWSQCCYDNKYRNTLINLMQKNKNFFLNFHEIIDFVP-NEDNLKK 127 Query: 123 WGRAHWRSLKNSGYA 137 R ++S ++ G+ Sbjct: 128 LARIRYKSYRSLGFN 142 >gi|43310|emb|CAA33226.1| unnamed protein product [Escherichia coli K-12] Length = 102 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E+ L+E LW Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 + F+PH + + PV + Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQ 86 >gi|260771003|ref|ZP_05879932.1| DNA polymerase III chi subunit [Vibrio furnissii CIP 102972] gi|260614240|gb|EEX39430.1| DNA polymerase III chi subunit [Vibrio furnissii CIP 102972] gi|315179051|gb|ADT85965.1| DNA polymerase III subunit chi [Vibrio furnissii NCTC 11218] Length = 149 Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 13/149 (8%) Query: 1 MRTLLFYRFKNDWEYNLL-------VLLQDEYEK-GKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY + D V L + + G +V +QC +++ + + E W + Sbjct: 1 MATATFYIVRPDSPQATAAGFEAYVVFLSQHFARQGAKVYLQCATQQHAEQIAERFWQVE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 FL H + VG+ + + + + + + + ++ A H + +VV Sbjct: 61 AKDFLGHNL-VGEGPKYGTN--IEIGHVGVKPSWNRQL-AINLADNHTTFAKAFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + +++ + + R ++ + +GY I Sbjct: 117 VP-NEENAKQRSRERYKLYRQAGYQLQTI 144 >gi|126640319|ref|YP_001083303.1| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 17978] Length = 95 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 13/98 (13%) Query: 42 DSLNEYLWTWKKDGFLPHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHI 100 +L+E LW++ F+ HGVD D S+ QP N N + Sbjct: 5 QTLDEKLWSFDPTSFIAHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HAL 53 Query: 101 GDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 V+++ ++ I+ +++ + + GR ++ + G P Sbjct: 54 EQVNHFSHIIEIVE-NNEAAKQIGREKFKMYRRLGIEP 90 >gi|262393200|ref|YP_003285054.1| DNA polymerase III chi subunit [Vibrio sp. Ex25] gi|262336794|gb|ACY50589.1| DNA polymerase III chi subunit [Vibrio sp. Ex25] Length = 150 Score = 52.8 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 +G +V + C + + L E W D F+ H + VG+ +++ + + + + + Sbjct: 35 RQGAKVYLNCQDKPHAEQLAEAFWQVDADKFMAHNL-VGEGPKYATN--IEIGHNGVKPS 91 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 92 WNRQLV-INLAENETTFANKFAQVVDFVPC-EKKAKQLARERYKIYRQAGYQLQTI 145 >gi|27364859|ref|NP_760387.1| DNA polymerase III subunit chi [Vibrio vulnificus CMCP6] gi|37681093|ref|NP_935702.1| DNA polymerase III subunit chi [Vibrio vulnificus YJ016] gi|320155250|ref|YP_004187629.1| DNA polymerase III subunit chi [Vibrio vulnificus MO6-24/O] gi|27361004|gb|AAO09914.1| DNA polymerase III chi subunit [Vibrio vulnificus CMCP6] gi|37199843|dbj|BAC95673.1| DNA polymerase III, chi subunit [Vibrio vulnificus YJ016] gi|319930562|gb|ADV85426.1| DNA polymerase III chi subunit [Vibrio vulnificus MO6-24/O] Length = 149 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 57/149 (38%), Gaps = 13/149 (8%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY + L ++G +V + S+R + + EY W + Sbjct: 1 MQRATFYIVREHTPQATPEGFAHYVVFLAHHFAKQGAKVYLNGESKRHAEQIAEYFWQVE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+ H + VG+ +++ + + + + + ++ A + + +VV Sbjct: 61 PAQFVAHNL-VGEGPKYATN--IEIGHEGVKPSWNRQLV-INLAKNETTFANKFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ + + R ++ + +GY I Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|323496136|ref|ZP_08101196.1| DNA polymerase III subunit chi [Vibrio sinaloensis DSM 21326] gi|323318880|gb|EGA71831.1| DNA polymerase III subunit chi [Vibrio sinaloensis DSM 21326] Length = 149 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 61/149 (40%), Gaps = 13/149 (8%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY D +L L++ ++G +V + C + + L E+ W + Sbjct: 1 MANATFYIVNPDSPQASADGFDAYVLFLVRHFAKQGAKVYINCHDKTHAEQLAEHFWQVE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 ++ H + VG+ +++ + + S+ + + ++ A + + + +VV Sbjct: 61 PSEYMAHNL-VGEGPRYATN--IEIGHQSVKPSWNRQLV-INLAENNTTFANKFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ + + R ++ + +GY I Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|260772180|ref|ZP_05881097.1| DNA polymerase III chi subunit [Vibrio metschnikovii CIP 69.14] gi|260613047|gb|EEX38249.1| DNA polymerase III chi subunit [Vibrio metschnikovii CIP 69.14] Length = 149 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%) Query: 1 MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY ND ++ L +G +V V C + + L E W + Sbjct: 1 MATATFYLIANDSPQATITGFEHYIVYLAHHFARQGAKVYVHCQDQLHAEQLAERFWQVE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA--NTSTIRFLVDEASMHIGDVDYYEKVV 110 F+ H + +G+ + + + + + N + ++ A H + + +VV Sbjct: 61 PTQFIAHNL-IGEGPKYGTL--IEIGYQGVKPTYNRQLV---INLADNHTTFANAFREVV 114 Query: 111 FIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ + + R ++ + +GY I Sbjct: 115 DFVPC-EEKTKQLARERYKIYRQAGYQLQTI 144 >gi|93004881|ref|YP_579318.1| putative DNA polymerase III, chi subunit [Psychrobacter cryohalolentis K5] gi|92392559|gb|ABE73834.1| putative DNA polymerase III, chi subunit [Psychrobacter cryohalolentis K5] Length = 151 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 23/150 (15%) Query: 4 LLFYRFKNDWEYN----LLVLLQDEYEKG-KRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58 + FY + + + L Q K + + + + + +L++ LW + F+P Sbjct: 3 VSFYVLTENKAQDFLGFICQLTQTALNKSNQSLLILIDDDELLSTLDKALWEQEATSFIP 62 Query: 59 HGVDVGDEGD--FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY---------E 107 H + + D + PVLL+ + + +V ++H V + Sbjct: 63 HQRLLNADTDINHKALAPVLLSNYMP----ANFKGMVLNTTIHP--VSTFMTATINAKPT 116 Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 +V+ +I D S++ GR ++S + GY Sbjct: 117 RVLELIK-PDAASVQEGRHKYKSYQQLGYE 145 >gi|218710651|ref|YP_002418272.1| DNA polymerase III subunit chi [Vibrio splendidus LGP32] gi|218323670|emb|CAV19984.1| DNA polymerase III chi subunit [Vibrio splendidus LGP32] Length = 149 Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G ++ + C + + + E W + F+ H + VG+ +S+ + + + N Sbjct: 35 QGAKLYLNCNDKVHAERIAEVFWQVEPTEFIAHNL-VGEGPKYSTN--IEIGHQGVKPNW 91 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A H + + +V+ + ++ + + R ++ + +GY I Sbjct: 92 NRQLV-INLADNHTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|86147553|ref|ZP_01065863.1| DNA polymerase III subunit chi [Vibrio sp. MED222] gi|85834592|gb|EAQ52740.1| DNA polymerase III subunit chi [Vibrio sp. MED222] Length = 149 Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G ++ + C + + + E W + F+ H + VG+ +S+ + + + N Sbjct: 35 QGAKLYLNCNDKVHAERIAEVFWQVEPTEFIAHNL-VGEGPKYSTN--IEIGHQGVKPNW 91 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A H + + +V+ + ++ + + R ++ + +GY I Sbjct: 92 NRQLV-INLADNHTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|323492967|ref|ZP_08098105.1| DNA polymerase III subunit chi [Vibrio brasiliensis LMG 20546] gi|323312798|gb|EGA65924.1| DNA polymerase III subunit chi [Vibrio brasiliensis LMG 20546] Length = 149 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 54/149 (36%), Gaps = 13/149 (8%) Query: 1 MRTLLFYRFKNDWEYNLLV-------LLQDEYE-KGKRVSVQCGSERVRDSLNEYLWTWK 52 M FY + L + +G +V + C ++ + + E W Sbjct: 1 MANATFYLITEESHQATPEGFEEYILFLSRHFAKQGAKVYLNCNNKAHAEQIAERFWQVD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 F+ H + VG+ +++ + + + + + ++ A + + +VV Sbjct: 61 SSEFMAHNL-VGEGPRYATN--IEIGYQGVKPSWNRQLV-INLAENETTFANKFAEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ + + R ++ + +GY I Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|148651869|ref|YP_001278962.1| DNA polymerase III chi subunit, HolC [Psychrobacter sp. PRwf-1] gi|148570953|gb|ABQ93012.1| DNA polymerase III, chi subunit [Psychrobacter sp. PRwf-1] Length = 166 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 39 RVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM 98 L+ LW++ F+ H + + PV ++ S L A+ Sbjct: 58 ERLKQLDTQLWSFDPVSFVAHDFILEEAAVSQLSAPV--SLVSTLPKGFDGVILNLAATP 115 Query: 99 HIGDVDYY-----EKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 V+ E+V+ II T D+ + GR +R+ + G+ Sbjct: 116 LPLSVETTAAVLPERVLEII-TPDEAGKQLGRDKYRAYQQLGFE 158 >gi|84387838|ref|ZP_00990853.1| DNA polymerase III subunit chi [Vibrio splendidus 12B01] gi|84377353|gb|EAP94221.1| DNA polymerase III subunit chi [Vibrio splendidus 12B01] Length = 149 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G ++ + C + + + E W + + F+ H + VG+ +S+ + + + N Sbjct: 35 QGAKLYLNCNDKEHAERIAEVFWQVEPNEFIAHNL-VGEGPKYSTN--IEIGYQGVKHNW 91 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A + + + +V+ + ++ + + R ++ + +GY I Sbjct: 92 NRQLV-INLADNNTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|312884629|ref|ZP_07744332.1| DNA polymerase III subunit chi [Vibrio caribbenthicus ATCC BAA-2122] gi|309367721|gb|EFP95270.1| DNA polymerase III subunit chi [Vibrio caribbenthicus ATCC BAA-2122] Length = 150 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 13/149 (8%) Query: 1 MRTLLFYRFKNDWEYN--LLVLLQDEYEKGK------RVSVQCGSERVRDSLNEYLWTWK 52 M FY + + L L Y G RV + C + + L E W Sbjct: 1 MSRATFYIVQETSKQASYLGFLNYVVYLAGHFAKQQARVYLNCHDIKEAEQLAELFWQAD 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + F+ H + VG+ + + + + + + + + +++ A ++ + + +VV Sbjct: 61 EKEFIAHNL-VGEGPKYGTK--IEIGHQGVKPSWNR-QIVINMAKVNTTFANRFTEVVDF 116 Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + D+ + + R ++ + GY I Sbjct: 117 VPL-DKKAKQIARERYKLYRQMGYQLQTI 144 >gi|261253955|ref|ZP_05946528.1| DNA polymerase III chi subunit [Vibrio orientalis CIP 102891] gi|260937346|gb|EEX93335.1| DNA polymerase III chi subunit [Vibrio orientalis CIP 102891] Length = 149 Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 45/112 (40%), Gaps = 5/112 (4%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 +V + C + + + E W F+ H + VG+ +++ V + + + + Sbjct: 38 KVYLNCHDKAHAEQIAELFWQVDAKEFIAHNL-VGEGPKYATN--VEIGYQGVRPSWNRQ 94 Query: 90 RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 ++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 95 LV-INLAENDTTFANKFAEVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|221066431|ref|ZP_03542536.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni KF-1] gi|220711454|gb|EED66822.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni KF-1] Length = 77 Score = 48.2 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133 PV+L + + LV+ + +E+VV I+++ D+ + RA WR Sbjct: 6 PVIL--AEHLQDLPHYDVLVNLTPQVPSGFERFERVVEIVSSGDEMDRQDARARWRDYAA 63 Query: 134 SGYA 137 G++ Sbjct: 64 RGFS 67 >gi|148977746|ref|ZP_01814302.1| DNA polymerase III subunit chi [Vibrionales bacterium SWAT-3] gi|145962960|gb|EDK28230.1| DNA polymerase III subunit chi [Vibrionales bacterium SWAT-3] Length = 149 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G ++ + C + + + E W + F+ H + VG+ +S+ + + + N Sbjct: 35 QGAKLYLNCNDKAHAERIAEVFWQVEPSEFIAHNL-VGEGPKYSTN--IEIGYQGVKHNW 91 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + ++ A H + + +V+ + ++ + + R ++ + +GY I Sbjct: 92 NRQLV-INLADNHTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|62083316|gb|AAX62381.1| HolC [Vibrio cholerae non-O1/non-O139] Length = 145 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 23/149 (15%) Query: 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M+ FY ND E + + + + GKRV + C E W Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDESRLTG-----WMNP 55 Query: 53 ----KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEK 108 F+P G G PV + + +S L+ + + + Sbjct: 56 VGASGRSFVPIITGEGPRGGA----PVEIAWPQKRS-SSRRDILISLRTSFADFATAFTE 110 Query: 109 VVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 VV + + + R +++ + +G+ Sbjct: 111 VVDFVP-YEDSLKQLARERYKAYRVAGFN 138 >gi|254507365|ref|ZP_05119500.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus 16] gi|219549621|gb|EED26611.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus 16] Length = 149 Score = 47.4 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86 +G +V + C + + + E W + F+ H + VG+ + + V + ++ + Sbjct: 35 QGAKVYLNCHDKSHAEQIAETFWQAEPHHFIAHNL-VGEGPKYGTK--VEIGYQAVKPSW 91 Query: 87 STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + + +++ A + + +VV + ++ + + R ++ + +GY I Sbjct: 92 NR-QIVINLAENETTFANKFAEVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144 >gi|257454354|ref|ZP_05619617.1| DNA polymerase III, chi subunit [Enhydrobacter aerosaccus SK60] gi|257448257|gb|EEV23237.1| DNA polymerase III, chi subunit [Enhydrobacter aerosaccus SK60] Length = 155 Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 11/139 (7%) Query: 2 RTLLFYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + FY + + L+ K + + + + SL++ LW+ F+PH Sbjct: 4 SQISFYILSPQKKQLAFVCQLISTVLAKSEDSIIVVAASEILPSLDDRLWSLSDVAFIPH 63 Query: 60 GVDVGDEGDFSSFQP--VLLTISSLNANTST--IRFLVDEASMHIGDVDYYEKVVFIINT 115 + + + P V+LT + + L +EA + +++ +I+ Sbjct: 64 QIIQQLDDFYQQKLPASVVLTDNIELITQFDGVVINLTNEAIVD----TQASRLLEVIDA 119 Query: 116 DDQGSLEWGRAHWRSLKNS 134 +E GR +R + Sbjct: 120 A-PEQVESGRQKYRVYQAQ 137 >gi|71064623|ref|YP_263350.1| DNA polymerase III, chi subunit [Psychrobacter arcticus 273-4] gi|71037608|gb|AAZ17916.1| DNA polymerase III, chi subunit [Psychrobacter arcticus 273-4] Length = 152 Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 14/111 (12%) Query: 36 GSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD--FSSFQPVLLTISSLNANTSTIRFLV 93 + +LNE LWT + F+PH + + D + P+LL+ + + +V Sbjct: 41 DDAALLSALNEALWTQEATSFIPHQYLLDADTDINHKTLAPILLSSYMP----ANFKGMV 96 Query: 94 DEASMHIGDV-------DYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 +++ + +V+ +I D S++ GR ++S + GY Sbjct: 97 LNTTIYPVNTFMAATNNAQPTRVLELIK-PDATSVQEGRHKYKSYQQLGYE 146 >gi|264678994|ref|YP_003278901.1| DNA polymerase III chi subunit, HolC [Comamonas testosteroni CNB-2] gi|262209507|gb|ACY33605.1| DNA polymerase III chi subunit, HolC [Comamonas testosteroni CNB-2] Length = 77 Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 71 SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130 + PV+L + + LV+ + + +VV I+++ D+ + RA WR Sbjct: 3 AASPVIL--AEHLQDLPHYDVLVNLTPQVPSGFERFARVVEIVSSGDEMDRQDARARWRD 60 Query: 131 LKNSGYA 137 G++ Sbjct: 61 YAARGFS 67 >gi|118496827|ref|YP_897877.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. novicida U112] gi|194324492|ref|ZP_03058264.1| putative DNA polymerase III chi subunit, HolC family [Francisella tularensis subsp. novicida FTE] gi|254372191|ref|ZP_04987683.1| DNA polymerase III protein [Francisella tularensis subsp. novicida GA99-3549] gi|118422733|gb|ABK89123.1| DNA polymerase III, chi subunit [Francisella novicida U112] gi|151569921|gb|EDN35575.1| DNA polymerase III protein [Francisella novicida GA99-3549] gi|194321327|gb|EDX18813.1| putative DNA polymerase III chi subunit, HolC family [Francisella tularensis subsp. novicida FTE] Length = 146 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 8/137 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + F + D L VL+ EY K +++ + L++ LW +D F Sbjct: 1 MMKIEFKVLQTQDINQMLEVLITEVVKEYALQKTIAILAP-AGIAKQLDDKLWQDGQDSF 59 Query: 57 LPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 +PH + P+L+T + A+ + + + ++ V E + Sbjct: 60 IPHHCAINAREYNQYNNIPILITDNLFIASGYDVLINIMDVAVDPQRVKVKE--LKEFVY 117 Query: 116 DDQGSLEWGRAHWRSLK 132 +L+ R + K Sbjct: 118 QQDSALQASRKKYVYYK 134 >gi|208780558|ref|ZP_03247897.1| DNA polymerase III chi subunit, HolC family [Francisella novicida FTG] gi|208743533|gb|EDZ89838.1| DNA polymerase III chi subunit, HolC family [Francisella novicida FTG] gi|328676291|gb|AEB27161.1| DNA polymerase III (CHI subunit) protein [Francisella cf. novicida Fx1] Length = 145 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 3/93 (3%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99 L++ LW +D F+PH + P+L+T + A+ + + + ++ Sbjct: 43 AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFIASGYDVLINIMDVAVD 102 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 V E + +L+ R + K Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 133 >gi|254373674|ref|ZP_04989158.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548] gi|151571396|gb|EDN37050.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548] Length = 146 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 3/93 (3%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99 L++ LW +D F+PH + P+L+T + A+ + + + ++ Sbjct: 44 AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFIASGYDVLINIMDVAVD 103 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 V E + +L+ R + K Sbjct: 104 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 134 >gi|46446685|ref|YP_008050.1| hypothetical protein pc1051 [Candidatus Protochlamydia amoebophila UWE25] gi|46400326|emb|CAF23775.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25] Length = 150 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 24 EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLN 83 +E+ KR+ + + ++ LW + +D FL H + ++ +++T Sbjct: 38 SFEQEKRLQILVPTIEAGQYIDSLLWRYPEDSFLTHTLTTNLSPEW-----IVITT-EET 91 Query: 84 ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 N + L++ I + ++ + + LE + +++ ++ G A Sbjct: 92 VNLNLAARLLNLCPHPIKYFSLFAEIYELYDESHPQKLENSKLRFKNYQDWGLA 145 >gi|167626838|ref|YP_001677338.1| DNA polymerase III (chi subunit) protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596839|gb|ABZ86837.1| DNA polymerase III (CHI subunit) protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 145 Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Query: 4 LLFYRFKND-WEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 + F + L VL+ EY++ K +++ + + L++ LW +D F+PH Sbjct: 3 VEFRVLQTPDINQMLEVLIDTVIKEYDECKTIAILAPTG-IAKQLDDDLWQDGQDSFIPH 61 Query: 60 GVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 + P+L+T + + + + E ++ V E + + Sbjct: 62 HCAIAAREYNQYKNIPILITDNLFITSGYDVLINIMEVAVDPQRVKIKE--LKEFVYQED 119 Query: 119 GSLEWGRAHWRSLKNSG 135 +L+ R + KNS Sbjct: 120 RALQASRKKYVYYKNSN 136 >gi|62262859|gb|AAX78108.1| unknown protein [synthetic construct] Length = 155 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + F + D L VL+ EY K +++ + L++ LW +D F Sbjct: 1 MMKIEFKVLQTQDINQMLEVLITEVVKEYALQKTIAILAP-AGIAKQLDDKLWQDGQDSF 59 Query: 57 LPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 +PH + P+L+T + + + + + ++ V E + Sbjct: 60 IPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVDPQRVKVKE--LKEFVY 117 Query: 116 DDQGSLEWGRAHWRSLK 132 +L+ R + K Sbjct: 118 QQDSALQASRKKYVYYK 134 >gi|56707451|ref|YP_169347.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110669922|ref|YP_666479.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. tularensis FSC198] gi|187932166|ref|YP_001892151.1| DNA polymerase III, chi subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254370854|ref|ZP_04986859.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis FSC033] gi|56603943|emb|CAG44931.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320255|emb|CAL08314.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis subsp. tularensis FSC198] gi|151569097|gb|EDN34751.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis FSC033] gi|187713075|gb|ACD31372.1| DNA polymerase III, chi subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 146 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 1 MRTLLFYRFKN-DWEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56 M + F + D L VL+ EY K +++ + L++ LW +D F Sbjct: 1 MMKIEFKVLQTQDINQMLEVLITEVVKEYALQKTIAILAP-AGIAKQLDDKLWQDGQDSF 59 Query: 57 LPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115 +PH + P+L+T + + + + + ++ V E + Sbjct: 60 IPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVDPQRVKVKE--LKEFVY 117 Query: 116 DDQGSLEWGRAHWRSLK 132 +L+ R + K Sbjct: 118 QQDSALQASRKKYVYYK 134 >gi|213612874|ref|ZP_03370700.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 88 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 + F+PH + + PV + N+S L+ + + +VV Sbjct: 1 PAESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVD 56 Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYA 137 + ++ + R +++ + +G+ Sbjct: 57 FVP-YEETLKQLARERYKAYRVAGFN 81 >gi|241667416|ref|ZP_04754994.1| DNA polymerase III (chi subunit) protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875965|ref|ZP_05248675.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841986|gb|EET20400.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 145 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 3/96 (3%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99 L++ LW +D F+PH + P+L+T + + + + E ++ Sbjct: 43 AKQLDDDLWQDGQDSFIPHHCAIAAREYNQYKNIPILITDNLFITSGYDVLINIMEVAVD 102 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 V E + + +L+ R + KNS Sbjct: 103 PQRVKIKE--LKEFVYQEDRALQASRKKYVYYKNSN 136 >gi|134302609|ref|YP_001122580.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. tularensis WY96-3418] gi|224456533|ref|ZP_03665006.1| DNA polymerase III, chi subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254874290|ref|ZP_05247000.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|134050386|gb|ABO47457.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis subsp. tularensis WY96-3418] gi|254840289|gb|EET18725.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158595|gb|ADA77986.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis subsp. tularensis NE061598] Length = 145 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99 L++ LW +D F+PH + P+L+T + + + + + ++ Sbjct: 43 AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVD 102 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 V E + +L+ R + K Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 133 >gi|115314147|ref|YP_762870.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. holarctica OSU18] gi|254367037|ref|ZP_04983073.1| DNA-directed DNA polymerase, CHI subunit [Francisella tularensis subsp. holarctica 257] gi|115129046|gb|ABI82233.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134252863|gb|EBA51957.1| DNA-directed DNA polymerase, CHI subunit [Francisella tularensis subsp. holarctica 257] Length = 146 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99 L++ LW +D F+PH + P+L+T + + + + + ++ Sbjct: 44 AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVD 103 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 V E + +L+ R + K Sbjct: 104 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 134 >gi|89255643|ref|YP_513004.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. holarctica LVS] gi|156501593|ref|YP_001427658.1| DNA polymerase III subunit chi [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009915|ref|ZP_02274846.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC200] gi|254368546|ref|ZP_04984562.1| DNA polymerase III protein [Francisella tularensis subsp. holarctica FSC022] gi|290953460|ref|ZP_06558081.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. holarctica URFT1] gi|295313258|ref|ZP_06803895.1| DNA polymerase III (chi subunit) protein [Francisella tularensis subsp. holarctica URFT1] gi|89143474|emb|CAJ78650.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis subsp. holarctica LVS] gi|156252196|gb|ABU60702.1| putative DNA polymerase III chi subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121449|gb|EDO65640.1| DNA polymerase III protein [Francisella tularensis subsp. holarctica FSC022] Length = 145 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99 L++ LW +D F+PH + P+L+T + + + + + ++ Sbjct: 43 AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVD 102 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132 V E + +L+ R + K Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 133 >gi|328675381|gb|AEB28056.1| DNA polymerase III (CHI subunit) protein [Francisella cf. novicida 3523] Length = 145 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 3/96 (3%) Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99 L++ LW +D F+PH + P+L+T + + + + E ++ Sbjct: 43 AKQLDDDLWQDGQDSFIPHHCAINAREYNQYKNIPILITDNLFITSGYDVLINIMEVAVD 102 Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135 V E + +L+ R + KNS Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVFYKNSN 136 >gi|254468885|ref|ZP_05082291.1| hypothetical protein KB13_1110 [beta proteobacterium KB13] gi|207087695|gb|EDZ64978.1| hypothetical protein KB13_1110 [beta proteobacterium KB13] Length = 139 Score = 40.9 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 8/138 (5%) Query: 1 MRTLLF-YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 M + F Y + E L ++L Y K +R + C + L++ LW GF P Sbjct: 1 MTQIEFIYNLDSYKEG-LALILDKRY-KNQRTIIFCDNTETSHELSDSLWMNP--GFFP- 55 Query: 60 GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119 + E S QP + N +++ + YEK + ++ D Sbjct: 56 -NIIWSEKLSSDVQPSENFLIGSQFNKYFDELVINVSGQECSFFSRYEKSIELVLKSD-N 113 Query: 120 SLEWGRAHWRSLKNSGYA 137 R + ++ GY Sbjct: 114 EKASARERLKKIRECGYE 131 >gi|9652253|gb|AAF91463.1|AF282267_2 DNA polymerase III holoenzyme chi subunit [Vibrio cholerae O395] Length = 123 Score = 40.9 bits (95), Expect = 0.060, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 12/122 (9%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L + +G R+ +QC + + L E W + Sbjct: 1 MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60 Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112 + FL H + ++ + + +S + + ++ A + +VV Sbjct: 61 PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 116 Query: 113 IN 114 + Sbjct: 117 VP 118 >gi|118594054|ref|ZP_01551401.1| DNA polymerase III chi subunit, HolC [Methylophilales bacterium HTCC2181] gi|118439832|gb|EAV46459.1| DNA polymerase III chi subunit, HolC [Methylophilales bacterium HTCC2181] Length = 139 Score = 39.7 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 13/138 (9%) Query: 1 MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 M + F D + + ++ +K + + + SL++ LW FLPH Sbjct: 1 MTNIQFIFNVADKQGLIFEIIASSVKKNRSSLTLFDDKALMVSLSDMLWHNDVFSFLPHQ 60 Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIR--FLVDEASMHIGDVDYYEKVVFIINTDDQ 118 + SS + L+ N L++ + I Y K+ +I D+ Sbjct: 61 TNQS-----SSINKICLSD-----NGIKYMDDILINATNEKIEGFSRYLKLYELI-GLDE 109 Query: 119 GSLEWGRAHWRSLKNSGY 136 R + K+ GY Sbjct: 110 LEKANARKRFTFYKDCGY 127 >gi|121730354|ref|ZP_01682712.1| hypothetical protein VCV52_2462 [Vibrio cholerae V52] gi|121627895|gb|EAX60476.1| hypothetical protein VCV52_2462 [Vibrio cholerae V52] Length = 71 Score = 39.0 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 8/71 (11%) Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52 M T FY D L + +G R+ +QC + + L E W + Sbjct: 1 MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60 Query: 53 KDGFLPHGVDV 63 + FL H + Sbjct: 61 PEQFLAHNLVG 71 >gi|319779264|ref|YP_004130177.1| hypothetical protein TEQUI_1110 [Taylorella equigenitalis MCE9] gi|317109288|gb|ADU92034.1| hypothetical protein TEQUI_1110 [Taylorella equigenitalis MCE9] Length = 114 Score = 37.8 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 10/109 (9%) Query: 34 QCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR--- 90 C ++ + +E LW+ F+PH D +++ +N + Sbjct: 2 YCHDPKLANKFSERLWSKDDCNFIPHYFAGDDIVIPPR---IIICNEDIN-DWFKKLNPQ 57 Query: 91 --FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 FL++ ++ ++ + +E ++ + S R K G+ Sbjct: 58 PYFLLNLSTDYLKEATLFENILE-FVMSESESKRLARDRVLKYKQDGHE 105 >gi|290941|gb|AAA61957.1| DNA polymerase III Chi subunit [Haemophilus influenzae] Length = 88 Score = 37.0 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 5/84 (5%) Query: 52 KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 + F+PH + + P+ ++ N L++ + +++ Sbjct: 1 DPNEFVPHNLSGEATQYPT---PIEISWLGKR-NLQRRDLLINLQQEIPDFSHSFTQIID 56 Query: 112 IINTDDQGSLEWGRAHWRSLKNSG 135 + DD R ++ L+ G Sbjct: 57 FVPKDD-ALKTQARERYKQLRLQG 79 >gi|227495780|ref|ZP_03926091.1| secreted protein [Actinomyces urogenitalis DSM 15434] gi|226834709|gb|EEH67092.1| secreted protein [Actinomyces urogenitalis DSM 15434] Length = 525 Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 21 LQDEYEKGKRVSVQC-GSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 L+ G+RV +Q ++ D++ W + + G P V E D ++++ Sbjct: 433 LRRAVRAGERVRLQAEAADPDGDAVALRWWAYPEAG--PRPCPVAPELDDDGQGGAVVSV 490 Query: 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114 I +V+ + + Y++VV ++ Sbjct: 491 PQEAEPGQEIHLVVEGTDDGVPALTRYQRVVLVVG 525 >gi|237732266|ref|ZP_04562747.1| thiamine biosynthesis lipoprotein ApbE [Citrobacter sp. 30_2] gi|226907805|gb|EEH93723.1| thiamine biosynthesis lipoprotein ApbE [Citrobacter sp. 30_2] Length = 350 Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 13/58 (22%) Query: 11 NDWEYNLL--VLLQDEYEKGKRVSVQCGSERVRDSL-----------NEYLWTWKKDG 55 + + VL RVSV ++ L ++ L T+K D Sbjct: 25 KPAQTTIPATVLKGKTMGTFWRVSVVGVDDKRARELQAKIQTQLDADDQLLSTYKNDS 82 >gi|156933164|ref|YP_001437080.1| thiamine biosynthesis lipoprotein ApbE [Cronobacter sakazakii ATCC BAA-894] gi|156531418|gb|ABU76244.1| hypothetical protein ESA_00975 [Cronobacter sakazakii ATCC BAA-894] Length = 328 Score = 35.9 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 27/129 (20%) Query: 18 LVLLQDEYEKGKRVSVQCGS-----------ERVRDSLNEYLWTWKKDGFL---PHGVDV 63 LVL RVS+ + D+ + L TWK D L H Sbjct: 12 LVLEGKTMGTSWRVSLADVDTARASELREKIQARLDADDRLLSTWKDDSALMRFNHARTT 71 Query: 64 GDEGDFSSFQPVL-----LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118 + ++ + + NA T+ LV+ + T DQ Sbjct: 72 APWPVDEAMADIVTESLRVGAKTDNAMDITVGPLVNLWGFGPDKQP--------VKTPDQ 123 Query: 119 GSLEWGRAH 127 ++ RA Sbjct: 124 AQIDAARAR 132 >gi|296446523|ref|ZP_06888466.1| putative ABC phosphate/phosphonate transporter, periplasmic ligand binding protein [Methylosinus trichosporium OB3b] gi|296256019|gb|EFH03103.1| putative ABC phosphate/phosphonate transporter, periplasmic ligand binding protein [Methylosinus trichosporium OB3b] Length = 260 Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 4/80 (5%) Query: 33 VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFL 92 ++ L+E T LP+ ++ L + T+ IR Sbjct: 172 IRPVDSERYRILDE---TISSPS-LPYVTSADTSESDAAAIAATLHEIMDDPQTADIRGA 227 Query: 93 VDEASMHIGDVDYYEKVVFI 112 ++ A + DVD YE+++ Sbjct: 228 LELAGLSTPDVDAYERLMEF 247 >gi|254283850|ref|ZP_04958818.1| hypothetical protein NOR51B_2353 [gamma proteobacterium NOR51-B] gi|219680053|gb|EED36402.1| hypothetical protein NOR51B_2353 [gamma proteobacterium NOR51-B] Length = 471 Score = 35.5 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 6 FYRFKNDWEYNLLVLLQDEYEKGKRV-SVQCGSERVRDSLNEYLWTWKKD 54 F D E +L++++ E G +V S + LW ++D Sbjct: 284 FEHLGEDTEAQILMIVERCMESGWVADAVMSQSVAQARA----LWRLRED 329 >gi|330938927|gb|EGH42428.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. pisi str. 1704B] Length = 62 Score = 35.1 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%) Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 LV+ + +V ++ +D R +RS + GY P Sbjct: 3 GEHSDLLVNLDLSIPAFFKRFARVAEVVV-EDPAIRLAARESFRSYREQGYPPQ 55 >gi|325674807|ref|ZP_08154494.1| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Rhodococcus equi ATCC 33707] gi|325554393|gb|EGD24068.1| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Rhodococcus equi ATCC 33707] Length = 257 Score = 35.1 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85 ++G RV+V + E + H VD+ D ++ + ++ Sbjct: 25 QRGWRVAVLDRDAESLERTGELVGVACVAA---HAVDIRDGDAVAAAVDTIESLHGPLTG 81 Query: 86 TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141 + + +++ S+ + D +++V + + G L R+ R+++ G V+ Sbjct: 82 LAHVAGVLETGSVLDSEPDSWQRV---FDVNVTGLLNVIRSVGRAMRARGAGAIVV 134 >gi|171913821|ref|ZP_02929291.1| FkbH like protein [Verrucomicrobium spinosum DSM 4136] Length = 607 Score = 35.1 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 14/97 (14%) Query: 7 YR-FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD 65 Y K + L L+ G R + + L+ LW PHG+ VG Sbjct: 224 YHWLKQPFSPAGLSLVGRHLATGVRALTSGRRKVLVLDLDNTLWGGVVGESGPHGIAVGG 283 Query: 66 EGDFSSFQP------------VLLTISSLNANTSTIR 90 G+ +F V+L +SS N N + R Sbjct: 284 TGEGQAFTAFQKYAKRLKDSGVILAVSSKN-NDADAR 319 >gi|288934297|ref|YP_003438356.1| ApbE family lipoprotein [Klebsiella variicola At-22] gi|288889026|gb|ADC57344.1| ApbE family lipoprotein [Klebsiella variicola At-22] Length = 347 Score = 35.1 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 14/81 (17%) Query: 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSL-----------NEYLWTWKKDGFL- 57 VL RVSV E ++L + L TWK D L Sbjct: 23 ATTPASTATVLDGKTMGTFWRVSVIGVDEAKAEALRAKVQAQLDADDRLLSTWKNDSALM 82 Query: 58 --PHGVDVGDEGDFSSFQPVL 76 H D + ++ Sbjct: 83 RFNHAADTQPWPVSEAMADIV 103 >gi|194211882|ref|XP_001490035.2| PREDICTED: similar to histone deacetylase 7 isoform 1 [Equus caballus] Length = 989 Score = 34.3 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 56 FLPHGVDVGDEGDFSSF-QPVLLTISSLNANTS 87 FLPHG++ G S QP+LL + + Sbjct: 327 FLPHGLEPEAGGPLPSRLQPILL-LDPSAPHAP 358 >gi|213965137|ref|ZP_03393335.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213952251|gb|EEB63635.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 236 Score = 34.3 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 15/87 (17%) Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIG--DVDYYEKVVFIINTDD- 117 D+ ++ QP L I+ N R +DE + D+ YE+V ++ +D Sbjct: 116 TATSDQPNYGDEQPT-LAITVHNPTGGECRVNLDEQQLRFEVYDLATYERVWSDVDCNDS 174 Query: 118 ----------QGSLEWGRAHWRSLKNS 134 + + A W L ++ Sbjct: 175 EGHGELVLAPGEEVNYA-ATWSRLTSA 200 >gi|290508500|ref|ZP_06547871.1| thiamine biosynthesis lipoprotein [Klebsiella sp. 1_1_55] gi|289777894|gb|EFD85891.1| thiamine biosynthesis lipoprotein [Klebsiella sp. 1_1_55] Length = 350 Score = 34.3 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 14/75 (18%) Query: 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSL-----------NEYLWTWKKDGFL---PHGV 61 VL RVSV E ++L + L TWK D L H Sbjct: 32 TATVLDGKTMGTFWRVSVIGVDEAKAEALRAKVQAQLDADDRLLSTWKNDSALMRFNHAA 91 Query: 62 DVGDEGDFSSFQPVL 76 D + ++ Sbjct: 92 DTRPWPVSEAMADIV 106 >gi|119776102|ref|YP_928842.1| diguanylate cyclase [Shewanella amazonensis SB2B] gi|119768602|gb|ABM01173.1| putative diguanylate cyclase (GGDEF domain protein) [Shewanella amazonensis SB2B] Length = 557 Score = 34.3 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 5 LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64 LF + L D + + S+R ++ +++ F PHG + Sbjct: 17 LFAHAQPLTPDELP---GDPLSREWMYFI--ESDRRMSPVDAKA-AFERGRFAPHGKKIP 70 Query: 65 DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117 G + P+ L + N + + ++ + + A+ ++ Y + + D Sbjct: 71 SLGIGA--PPLWLALPLQNPSNTDVQLIFELANAWQDELALY-----LFDQSD 116 >gi|283786472|ref|YP_003366337.1| decarboxylase [Citrobacter rodentium ICC168] gi|282949926|emb|CBG89551.1| putative decarboxylase [Citrobacter rodentium ICC168] Length = 551 Score = 34.3 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%) Query: 30 RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89 RV++ R L L W + + H + +G F QP + S A+ + Sbjct: 211 RVALLADFLARRFDLQPVLQRWMAETPMAHATLLMGKGLFDEQQPGFVGTYSGGASGEFV 270 Query: 90 RFLVDEASMHIGDVDYY 106 R ++ A I + Sbjct: 271 REAIEGADTTICVGTRF 287 >gi|190890343|ref|YP_001976885.1| methyl-accepting chemotaxis protein O-methyltransferase [Rhizobium etli CIAT 652] gi|190695622|gb|ACE89707.1| methyl-accepting chemotaxis protein O-methyltransferase protein [Rhizobium etli CIAT 652] Length = 302 Score = 34.0 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 38/126 (30%) Query: 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66 + F++ ++ L LLQ G RV + W+ + Sbjct: 103 HHFEHLRDHVLPELLQRAR-AGGRVRI---------------WS---------AASSDGQ 137 Query: 67 GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE---- 122 +S + LT+ SL N + F + A+ + + D+ +LE Sbjct: 138 EPYS----IALTVLSLMPNVADYDFKI-LATDIDPKILAIARA----GAYDESALETVSP 188 Query: 123 WGRAHW 128 R W Sbjct: 189 AMRKQW 194 >gi|332244193|ref|XP_003271257.1| PREDICTED: cadherin-23-like [Nomascus leucogenys] Length = 474 Score = 34.0 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 16/47 (34%) Query: 63 VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKV 109 D G V +T+ N N+ F D A D ++V Sbjct: 232 ADDGGPKVDSTVVYITVLDENDNSPRFDFTSDSAVSVPEDCPVGQRV 278 >gi|218661481|ref|ZP_03517411.1| methyl-accepting chemotaxis protein O-methyltransferase protein [Rhizobium etli IE4771] Length = 299 Score = 34.0 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 38/126 (30%) Query: 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66 + F++ ++ L LLQ G RV + W+ + Sbjct: 100 HHFEHLRDHVLPELLQRAR-AGGRVRI---------------WS---------AASSDGQ 134 Query: 67 GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE---- 122 +S + LT+ SL N + F + A+ + + D+ +LE Sbjct: 135 EPYS----IALTVLSLMPNVADYDFKI-LATDIDPKILAIARA----GAYDETALETVSP 185 Query: 123 WGRAHW 128 R W Sbjct: 186 AMRKQW 191 >gi|169616252|ref|XP_001801541.1| hypothetical protein SNOG_11296 [Phaeosphaeria nodorum SN15] gi|111059884|gb|EAT81004.1| hypothetical protein SNOG_11296 [Phaeosphaeria nodorum SN15] Length = 982 Score = 33.6 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 5/15 (33%), Positives = 10/15 (66%) Query: 45 NEYLWTWKKDGFLPH 59 +++LWT ++PH Sbjct: 735 DDHLWTTTDTSWIPH 749 >gi|317504649|ref|ZP_07962615.1| beta-galactosidase [Prevotella salivae DSM 15606] gi|315664220|gb|EFV03921.1| beta-galactosidase [Prevotella salivae DSM 15606] Length = 835 Score = 33.6 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQP 74 +++G R ++ + + +++ W LPH D EGDF + P Sbjct: 35 WDEGWRFALHNDDKAHETTFDDHAWRVLD---LPH--DWAIEGDFYALNP 79 >gi|300797967|ref|NP_001180070.1| histone deacetylase 7 [Bos taurus] gi|297474603|ref|XP_002687361.1| PREDICTED: histone deacetylase 7-like [Bos taurus] gi|296487765|gb|DAA29878.1| histone deacetylase 7-like [Bos taurus] Length = 988 Score = 33.6 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Query: 56 FLPHGVDVGDEGDFSSF-QPVLL 77 FLPHG++ G S QP+LL Sbjct: 325 FLPHGLEPEAGGPLPSRLQPILL 347 >gi|32473633|ref|NP_866627.1| signal peptide [Rhodopirellula baltica SH 1] gi|32444169|emb|CAD74166.1| hypothetical protein-signal peptide and transmembrane prediction [Rhodopirellula baltica SH 1] Length = 527 Score = 33.6 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 6/104 (5%) Query: 10 KNDWEYNLLVLLQDEYEKGKRVSV--QCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG 67 + E L + L + + GK VS+ S+ + L+ W +++ G PH + + D Sbjct: 425 NHPPEVKLAMPLDLQVQAGKEVSLSAHGSSDPDGNQLSYRWWHYQEAGTFPHTIQIRDAA 484 Query: 68 DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111 + ++ TI + + + Y++VV Sbjct: 485 QQDAS----FSVPESARQGETIHLICEVTDNGTPALTRYQRVVI 524 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.312 0.166 0.574 Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,465,114,515 Number of Sequences: 14124377 Number of extensions: 159169519 Number of successful extensions: 430911 Number of sequences better than 10.0: 777 Number of HSP's better than 10.0 without gapping: 860 Number of HSP's successfully gapped in prelim test: 274 Number of HSP's that attempted gapping in prelim test: 428653 Number of HSP's gapped (non-prelim): 1145 length of query: 141 length of database: 4,842,793,630 effective HSP length: 105 effective length of query: 36 effective length of database: 3,359,734,045 effective search space: 120950425620 effective search space used: 120950425620 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 76 (33.6 bits)