BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040068|gb|ACT56864.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 141

 Score =  291 bits (746), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG
Sbjct: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS
Sbjct: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120

Query: 121 LEWGRAHWRSLKNSGYAPDVI 141
           LEWGRAHWRSLKNSGYAPDVI
Sbjct: 121 LEWGRAHWRSLKNSGYAPDVI 141


>gi|315122197|ref|YP_004062686.1| DNA polymerase III subunit chi [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495599|gb|ADR52198.1| DNA polymerase III subunit chi [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 141

 Score =  204 bits (519), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 117/136 (86%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M   LF RFK++W+ + L+LL+ EY+ G R+S+QCGSER+RD+LNE LWTWKKD F+PHG
Sbjct: 1   MTDFLFCRFKHNWQNDFLILLESEYQNGLRISIQCGSERIRDALNERLWTWKKDSFMPHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +DVG+E   +SFQP+LLT+SS NAN S +RF VD+ASMHIGD+D+Y+K++FII+TDDQ S
Sbjct: 61  IDVGEEEALASFQPILLTVSSNNANASMVRFFVDQASMHIGDMDHYKKIIFIIDTDDQAS 120

Query: 121 LEWGRAHWRSLKNSGY 136
           L+WGRA+W++LK++GY
Sbjct: 121 LKWGRANWKNLKSNGY 136


>gi|209548674|ref|YP_002280591.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534430|gb|ACI54365.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 149

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDVLFYHLTETKLEDALPPLIDKSVERGWRVAVQTREAARRDALDAHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DEGDF+  QPVLLT++S NAN +T+RF++D A      +D YE+VVF+ +  DQ 
Sbjct: 61  GT---DEGDFAENQPVLLTVTSGNANAATVRFIIDGAE--PPPLDAYERVVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ LK  G+
Sbjct: 116 QLEAARAQWKKLKGEGH 132


>gi|327188013|gb|EGE55243.1| DNA polymerase III subunit chi [Rhizobium etli CNPAF512]
          Length = 149

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT+++D FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ LK  G+
Sbjct: 116 QLEAARAQWKRLKGEGH 132


>gi|218509824|ref|ZP_03507702.1| DNA polymerase III subunit chi [Rhizobium etli Brasil 5]
          Length = 149

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT+++D FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W  LK  G+
Sbjct: 116 QLEAARAQWNRLKGEGH 132


>gi|190891139|ref|YP_001977681.1| DNA polymerase III protein, chi subunit [Rhizobium etli CIAT 652]
 gi|190696418|gb|ACE90503.1| probable DNA polymerase III protein, chi subunit [Rhizobium etli
           CIAT 652]
          Length = 149

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A       D YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEP--PPADPYERIVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ LK  G+
Sbjct: 116 QLEAARAQWKRLKGEGH 132


>gi|241203952|ref|YP_002975048.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857842|gb|ACS55509.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 149

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+++LWT++++ FLPH
Sbjct: 1   MTDVLFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPADA--YERIVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ LK  G+
Sbjct: 116 QLEAARAQWKKLKGEGH 132


>gi|116251338|ref|YP_767176.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255986|emb|CAK07067.1| putative DNA polymerase III subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 149

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  L+    E+G RV+VQ      RD+L+++LWT++++ FLPH
Sbjct: 1   MTDVLFYHLTESRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPADA--YERIVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  RA W+ LK  G+
Sbjct: 116 QLDTARAQWKKLKGEGH 132


>gi|86357095|ref|YP_468987.1| DNA polymerase III subunit chi [Rhizobium etli CFN 42]
 gi|86281197|gb|ABC90260.1| putative DNA polymerase III, chi subunit protein [Rhizobium etli
           CFN 42]
          Length = 149

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL    E+G RV VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLLDKSIERGWRVVVQTSEAARRDALDAHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D     DF+  QPVLLT++S NAN +T+RF+VD A     D   YE+VVF+ +  DQ 
Sbjct: 61  GTDT---ADFAENQPVLLTVTSDNANAATVRFIVDGAEPPPADA--YERVVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ L+  G+
Sbjct: 116 QLEAARAQWKKLRGEGH 132


>gi|218459999|ref|ZP_03500090.1| DNA polymerase III subunit chi [Rhizobium etli Kim 5]
          Length = 149

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETKLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTFREETFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  NAN +T+RF+VD A       D YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAENQPVLLTVTPDNANAATVRFIVDGAEP--PPADSYERIVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ LK  G+
Sbjct: 116 QLEAARAQWKRLKGEGH 132


>gi|222085456|ref|YP_002543986.1| DNA polymerase III [Agrobacterium radiobacter K84]
 gi|221722904|gb|ACM26060.1| DNA polymerase III [Agrobacterium radiobacter K84]
          Length = 149

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  L+    E+G +V++Q   +  RD+L+ +LWT+++D FLPH
Sbjct: 1   MTDVLFYHLTESKLEDALPPLIDKSVERGWQVAIQTREQARRDALDTHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE + +  QPVLLT+S  N N +++RF +D A     D+D Y++VVFI +  DQ 
Sbjct: 61  GT---DESEMADRQPVLLTVSPDNLNNASVRFFIDGAEA--SDIDTYQRVVFIFDGYDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ LK  G+
Sbjct: 116 QLEGARAQWKKLKGEGH 132


>gi|110634106|ref|YP_674314.1| DNA polymerase III subunit chi [Mesorhizobium sp. BNC1]
 gi|110285090|gb|ABG63149.1| DNA polymerase III, chi subunit [Chelativorans sp. BNC1]
          Length = 172

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  L ++  ++  E  L  L++   E+G RV +Q  SE  RD+L+  LWT++ D F+PH 
Sbjct: 16  MEVLFYHLTESTLEEALPPLVEKSLERGWRVGIQTASEERRDALDACLWTFRDDSFVPHA 75

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
               D    ++ QPV+LT +  N N ++IRFLV+ A    G +D Y++ VF+ +  D   
Sbjct: 76  T---DREPHAAEQPVILTTAPANPNGASIRFLVEGAE--PGSLDGYQRAVFLFDGHDTSQ 130

Query: 121 LEWGRAHWRSLKNSGY 136
           L+  RAHW+++K +G+
Sbjct: 131 LDAARAHWKAMKAAGH 146


>gi|209885472|ref|YP_002289329.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5]
 gi|209873668|gb|ACI93464.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5]
          Length = 154

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  ++   E  L  L++   E+G RV VQ GSE   ++L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQDMRLEAVLPPLIEKSLERGWRVVVQAGSEERAEALDSHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     E D ++ QPV+LT+   N N +T+RFLVD A++   D   Y+++V I + DD G
Sbjct: 61  G--TWRESD-AAEQPVVLTVRDDNPNDATVRFLVDGATVP-EDCTAYQRIVLIFDGDDDG 116

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L+  RA W   K  GY
Sbjct: 117 ALQAARAAWTDCKARGY 133


>gi|13476528|ref|NP_108098.1| DNA polymerase III subunit chi [Mesorhizobium loti MAFF303099]
 gi|14027289|dbj|BAB54243.1| mlr7869 [Mesorhizobium loti MAFF303099]
          Length = 149

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   ++G R  VQ G+E  RD+L+++LWT++ D FL H
Sbjct: 1   MADVLFYHLTESTLEEALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                D   +   QP+LLT S  N N + IRFLVD A     D+  YE+ VF+ +  D  
Sbjct: 61  AT---DREAYPDEQPILLTTSDGNPNEAKIRFLVDGAV--PSDLAGYERAVFLFDGHDAA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            +E  R HW+++K++G+A
Sbjct: 116 QVEAARGHWKTMKDAGHA 133


>gi|299133715|ref|ZP_07026909.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2]
 gi|298591551|gb|EFI51752.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2]
          Length = 155

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  ++    N+L  LL+   E+G RV VQ GSE   D L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQDMKLENVLPPLLEKSLERGWRVVVQVGSEERADMLDSHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     E D +S +PV+LT+S  N N +++ FLVD A + I D   Y++VV I N DD  
Sbjct: 61  G--TWREADAAS-EPVVLTVSDANPNGASVCFLVDGAPVPI-DCSAYQRVVLIFNGDDDE 116

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L   RA W   K  G+
Sbjct: 117 ALGAARAAWTDCKARGF 133


>gi|163759138|ref|ZP_02166224.1| putative DNA polymerase III, chi subunit protein [Hoeflea
           phototrophica DFL-43]
 gi|162283542|gb|EDQ33827.1| putative DNA polymerase III, chi subunit protein [Hoeflea
           phototrophica DFL-43]
          Length = 149

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   E+G RVSV  GSE    +L+ +LWT++++ FLPH
Sbjct: 1   MAEILFYHLTESRLEDALPPLLEKSLERGWRVSVHLGSEERLAALDAHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D+    D    QPVLLT+S   AN +T+RF+ D A   +  +   E++V + +  DQ 
Sbjct: 61  GSDMAAHAD---RQPVLLTLSQEAANAATVRFVADGAD--LPALAGVERLVLMFDGHDQD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  RA W+ LK+ G+
Sbjct: 116 QLEAARAQWKRLKSDGH 132


>gi|325292489|ref|YP_004278353.1| DNA polymerase III chi subunit [Agrobacterium sp. H13-3]
 gi|325060342|gb|ADY64033.1| putative DNA polymerase III chi subunit [Agrobacterium sp. H13-3]
          Length = 149

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   E+G +V++Q   E  RD L+ +LWT++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDEERRDFLDTHLWTFRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             D          QP+LLT S+ N N +++RFLVD A      V+ YE++VF+ +  D  
Sbjct: 61  ATDTSAA---PQNQPILLTASNANGNEASVRFLVDGAEPPA--VEGYERIVFMFDGYDAY 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R HW+ LK  G+A
Sbjct: 116 QLEMARNHWKRLKTEGHA 133


>gi|227821478|ref|YP_002825448.1| DNA polymerase III subunit chi [Sinorhizobium fredii NGR234]
 gi|227340477|gb|ACP24695.1| DNA polymerase III, chi subunit protein [Sinorhizobium fredii
           NGR234]
          Length = 149

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTADAERRDALDTHLWIYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D    G+F++ QP+L+     N N +T+RFLVD A      +  YE+VVF+ +  DQ 
Sbjct: 61  GTDA---GEFAAEQPILIVAGDGNQNGATVRFLVDGAEPP--PLSDYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  R  W+ LK  G+
Sbjct: 116 QLESARGQWKRLKGEGH 132


>gi|15964909|ref|NP_385262.1| DNA polymerase III subunit chi [Sinorhizobium meliloti 1021]
 gi|307300979|ref|ZP_07580748.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C]
 gi|15074088|emb|CAC45735.1| Putative DNA polymerase III chi subunit [Sinorhizobium meliloti
           1021]
 gi|306903934|gb|EFN34520.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C]
          Length = 149

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D    G+F++ QP+L+     N N +T+RF+VD A      V  YE+VVF+ +  DQ 
Sbjct: 61  GTDA---GEFAAVQPILVVADDGNRNAATVRFVVDGAEP--PPVSEYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  R  W+ LK  G+
Sbjct: 116 QLEAARDQWKRLKGEGH 132


>gi|150395991|ref|YP_001326458.1| DNA polymerase III subunit chi [Sinorhizobium medicae WSM419]
 gi|150027506|gb|ABR59623.1| DNA polymerase III chi subunit HolC [Sinorhizobium medicae WSM419]
          Length = 149

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEVLFYHLTESKLEDALPPLLDKSIERGWRVVVQTVDAERRDALDTHLWVYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D    GDF++ QP+L+     N N +T+RFLVD A      V  YE+VVF+ +  DQ 
Sbjct: 61  GTDA---GDFATEQPILVVADHGNQNAATVRFLVDGAEP--PPVSDYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W+ LK  G+
Sbjct: 116 QLDAARDQWKRLKGEGH 132


>gi|159184617|ref|NP_354131.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58]
 gi|159139915|gb|AAK86916.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58]
          Length = 149

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   E+G +V++Q   +  RD L+ +LWT++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDDERRDFLDTHLWTFRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             D          QP+LLT SS N N + +RFLVD A      V+ YE+VVF+ +  D  
Sbjct: 61  ATDASSA---PQNQPILLTASSENGNAANVRFLVDGAEPLA--VETYERVVFMFDGYDAY 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R HW++LK  G++
Sbjct: 116 QLEMARNHWKTLKAEGHS 133


>gi|260466944|ref|ZP_05813126.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum
           WSM2075]
 gi|259029241|gb|EEW30535.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum
           WSM2075]
          Length = 149

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   ++G R  VQ G++  RD+L+++LWT++ D FL H
Sbjct: 1   MAEVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTDERRDALDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                D   +   QPVLLT    N N + IRFLVD A+    D+  YE+ VF+ +  D  
Sbjct: 61  AT---DREAYPGEQPVLLTTGDGNPNEAKIRFLVDGAA--PPDLSGYERAVFLFDGHDAA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            ++  RAHW+++K++G++
Sbjct: 116 QVDAARAHWKTMKDAGHS 133


>gi|307317714|ref|ZP_07597152.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83]
 gi|306896476|gb|EFN27224.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83]
          Length = 149

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D    G+F++ QP+L+     N N +T+RF+VD A      V  YE+VVF+ +  DQ 
Sbjct: 61  GTDA---GEFAAEQPILVVADDGNRNAATVRFVVDGAEP--PPVSEYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  R  W+ LK  G+
Sbjct: 116 QLEAARDQWKRLKGEGH 132


>gi|222148156|ref|YP_002549113.1| hypothetical protein Avi_1546 [Agrobacterium vitis S4]
 gi|221735144|gb|ACM36107.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 149

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+G +V V+       D L+++LWT++ D FL H
Sbjct: 1   MTEVLFYHLTETRLEDALPALLEKSVERGWKVGVEMRDPERCDRLDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+ +G++ +    QP+LL +SS N N +T+RF +D A   +  V  Y+++VF+ +  DQG
Sbjct: 61  GISIGEQAE---AQPILLCLSSDNPNGATVRFYIDGAVPDLPLV--YDRIVFVFDGHDQG 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R  W+ LK  G+A
Sbjct: 116 ELETARGEWKRLKGEGHA 133


>gi|158422164|ref|YP_001523456.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571]
 gi|158329053|dbj|BAF86538.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571]
          Length = 149

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L VLL+   E+G R  VQ GS   RD+L+ +LWT+    FLPH
Sbjct: 1   MTEVLFYHLERRPLEDALPVLLEKSLERGWRCVVQAGSPERRDALDAHLWTYNDASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D     +    QPVLLT+   N N + +RFLVD A   I D   Y +VV + +  D+ 
Sbjct: 61  GTDAQPRPE---RQPVLLTLDEANPNDAQVRFLVDGA--RIADASPYVRVVHMFDGRDET 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++   R  WR  K +G+
Sbjct: 116 AVAAARERWREAKAAGH 132


>gi|218659074|ref|ZP_03515004.1| DNA polymerase III subunit chi [Rhizobium etli IE4771]
          Length = 121

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDVHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  N N +T+RF+VD A         YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTPDNPNAATVRFIVDGAEP--PPAASYERIVFMFDGHDQE 115

Query: 120 SLEWGR 125
            LE  R
Sbjct: 116 QLEAAR 121


>gi|90423818|ref|YP_532188.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB18]
 gi|90105832|gb|ABD87869.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB18]
          Length = 150

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 7/139 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   ++G RV VQ  +E   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMTVEKVLPSLLEKSLQRGWRVVVQATTEERADALDTHLWTYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D    +S QP++LT    N N + +RFL+D A++   DV  Y+++V + N DD+
Sbjct: 61  ATWRVAD----ASQQPIVLTADEANPNGAKVRFLIDNAALPT-DVALYDRLVLVFNGDDE 115

Query: 119 GSLEWGRAHWRSLKNSGYA 137
            S+   RA W   K+ G+A
Sbjct: 116 DSVVMARAAWTDSKSRGFA 134


>gi|218682145|ref|ZP_03529746.1| DNA polymerase III subunit chi [Rhizobium etli CIAT 894]
          Length = 102

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 63/90 (70%), Gaps = 5/90 (5%)

Query: 47  YLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY 106
           +LWT++++ FLPHG+D   EGDF+  QPVLLT++S NAN +T+RF++D A      V+ Y
Sbjct: 1   HLWTFREESFLPHGID---EGDFAESQPVLLTVTSGNANAATVRFIIDGAEP--PPVEAY 55

Query: 107 EKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           E++VF+ +  DQ  LE  RA W+ LK  G+
Sbjct: 56  ERIVFMFDGHDQEQLEAARAQWKKLKGEGH 85


>gi|254473341|ref|ZP_05086738.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062]
 gi|211957457|gb|EEA92660.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062]
          Length = 149

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY+  K   E  L  LL+   E+   V+VQ G+E   D+++ YLWT+  DGFLPH
Sbjct: 1   MSEVLFYQLSKFPLERALPTLLEKCLERDWVVTVQFGTEERCDAIDSYLWTYSDDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     EG    FQP+ LT  S N N + +RFLVD A +   D   Y++VV++ + +DQ 
Sbjct: 61  G--TKKEG-HPEFQPIYLTTESDNPNEAIVRFLVDRAPL--PDPAQYQRVVYMFDGNDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L+  R  W  +KNS +
Sbjct: 116 ALQEARQRWLEVKNSDH 132


>gi|75675867|ref|YP_318288.1| DNA polymerase III subunit chi [Nitrobacter winogradskyi Nb-255]
 gi|74420737|gb|ABA04936.1| DNA polymerase III, chi subunit [Nitrobacter winogradskyi Nb-255]
          Length = 150

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+  +E+G R  V   SE   D+L+ +LW+++ D FLPH
Sbjct: 1   MTEVLFYHLQNMSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               + D G+    QP++LT+   N N +T+RFL+D A +   ++D YE++V I + DD 
Sbjct: 61  ATWRIEDAGE----QPIVLTVDGRNPNRATVRFLIDNAPLP-ENLDTYERLVLIFDGDDG 115

Query: 119 GSLEWGRAHWRSLKNSG 135
            +L+  RA W   K+ G
Sbjct: 116 AALDAARAIWTECKSRG 132


>gi|319784421|ref|YP_004143897.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170309|gb|ADV13847.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 149

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   ++G R  VQ G+E  RD+L+++LWT++ D FL H
Sbjct: 1   MADVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                D       QP+LLT    N N + IRFLVD A     D+  YE+ VF+ +  D  
Sbjct: 61  AT---DREAHPGEQPILLTTGDGNPNDAKIRFLVDGAV--PPDLGGYERAVFLFDGHDAA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  R HW+ +K++G+
Sbjct: 116 QLEAARGHWKVMKSAGH 132


>gi|27379220|ref|NP_770749.1| DNA polymerase III subunit chi [Bradyrhizobium japonicum USDA 110]
 gi|27352371|dbj|BAC49374.1| blr4109 [Bradyrhizobium japonicum USDA 110]
          Length = 150

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N    N+L  LL+   E+G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMTVENVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D  D    QP++L I   N N + +RFLVD A++   D   YE++V + N DD 
Sbjct: 61  ATWRVNDAAD----QPIVLAIEEDNPNGAHVRFLVDNAALP-QDAQGYERMVLLFNGDDP 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            +L   R+ W   K  G+
Sbjct: 116 DALALARSAWTDCKARGF 133


>gi|146340306|ref|YP_001205354.1| DNA polymerase III subunit chi [Bradyrhizobium sp. ORS278]
 gi|146193112|emb|CAL77123.1| putative DNA polymerase III, chi subunit, HolC [Bradyrhizobium sp.
           ORS278]
          Length = 150

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  ++   E  L  LL+   E+G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQSMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D  +    QP++L I   N N + +RFLVD A +   D   YE++V + N DD 
Sbjct: 61  ATWRVADVAE----QPIVLAIEESNPNRANVRFLVDNAPLP-SDSQSYERMVLVFNGDDP 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            +L   R+ W   KN G+
Sbjct: 116 DALAAARSAWTDCKNRGF 133


>gi|154253773|ref|YP_001414597.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans
           DS-1]
 gi|154157723|gb|ABS64940.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans
           DS-1]
          Length = 149

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   E+G R  V+ G     D+LN  LWT+  D FLPH
Sbjct: 1   MTEVLFYHLQNAPLEQVLPQLLERSLERGWRAIVRAGGPERLDALNNVLWTYSDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+G  ++ +PV LT+   N N + + FLVD A+   G++  YE+ V + +  D+ 
Sbjct: 61  G--TLDDGP-AALEPVFLTVDDENPNNANVLFLVDGAA--PGNIGPYERCVLMFDGRDEA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L   R HW++LK  G+
Sbjct: 116 ALAAAREHWKTLKAEGH 132


>gi|170743501|ref|YP_001772156.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46]
 gi|168197775|gb|ACA19722.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46]
          Length = 150

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+  RV VQ  SE    +L+++LWT+ ++ FLPH
Sbjct: 1   MTEILFYHMQRQPLESVLPNLLEKSLERRWRVVVQAASEERLAALDDHLWTFSEESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   E D  + QPV+LT+   N N +TIRFLV+ A++   D   YE++  + +  DQ 
Sbjct: 61  GTD--REPDAGT-QPVVLTLRDANPNGATIRFLVEGAALP-ADAGRYERICVLFDGSDQE 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR+ K +G++
Sbjct: 117 ALLLAREQWRAAKEAGHS 134


>gi|154245406|ref|YP_001416364.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus
           Py2]
 gi|154159491|gb|ABS66707.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus
           Py2]
          Length = 153

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+G R  VQCGS   RD+L+ +LWT+ +  FLPH
Sbjct: 1   MTEILFYHLERRPLEQVLPTLLEKSLERGWRCVVQCGSAERRDALDAHLWTYNEASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +          QPVLL  +  N N + +RFLVD  ++ + D   Y +VV + +  D  
Sbjct: 61  GTEA---QPVPERQPVLLATTEANPNGAQVRFLVD--AVPLADAAPYVRVVHLFDGRDDE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            +   R  WR  K +  A
Sbjct: 116 QVAAARERWREAKAAATA 133


>gi|170749513|ref|YP_001755773.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656035|gb|ACB25090.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans
           JCM 2831]
          Length = 150

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L++   ++G + ++Q  SE    +L+++LWT+  + FLPH
Sbjct: 1   MTEILFYHMQRQPLEKVLPNLVERSLDRGWQAAIQAASEERLQALDDHLWTYSDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   E D +S QPV+LT+  +N NT++IRFLV+ A +   D   YE++  + +  DQ 
Sbjct: 61  GTDR--EPDAAS-QPVVLTLRDVNPNTASIRFLVEGADL-PPDAGQYERICILFDGTDQD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  W+  K++G+A
Sbjct: 117 ALLRAREQWKQAKDAGHA 134


>gi|85716327|ref|ZP_01047300.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A]
 gi|85696843|gb|EAQ34728.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A]
          Length = 150

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+  +E+G R  V   SE   D+L+ +LW+++ D FLPH
Sbjct: 1   MTEVLFYHLQNTSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               + D    +S QP++LT+   N N +T+RFL+D A +     D YE++V I + DD 
Sbjct: 61  ATWRIED----ASEQPIVLTVDGRNPNGATVRFLIDSAPLP-ESPDTYERLVLIFDGDDS 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            +L+  RA W   K+ G+
Sbjct: 116 VALDAARAVWTECKSRGF 133


>gi|86749602|ref|YP_486098.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris HaA2]
 gi|86572630|gb|ABD07187.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris HaA2]
          Length = 150

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ GSE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQAGSEERADTLDAHLWTYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D    +  QP++LT    N N +T+RFL+D A++   D + YE++V + + DD+
Sbjct: 61  ATWRVAD----AMHQPIVLTAEESNPNAATVRFLLDNAALP-ADAEGYERMVLLFDGDDE 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            ++   R  W+  K+ G+
Sbjct: 116 DAVGMARDMWKQSKSRGF 133


>gi|92117861|ref|YP_577590.1| DNA polymerase III subunit chi [Nitrobacter hamburgensis X14]
 gi|91800755|gb|ABE63130.1| DNA polymerase III, chi subunit [Nitrobacter hamburgensis X14]
          Length = 151

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   E+G R  V   SE   D+L+ YLWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMALESVLPPLLEKTIERGWRAVVHTTSEERADALDAYLWTYRDDAFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               + D    +S QP+LLTI   N N +T+RFL+D A +   + + YE++V + + DD 
Sbjct: 61  ATWRIED----ASEQPILLTIDGHNPNRATVRFLIDSAPLP-ENPEAYERLVLVFDGDDG 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            +L+  R+ W   K  G+
Sbjct: 116 IALDAARSVWTECKARGF 133


>gi|115525292|ref|YP_782203.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisA53]
 gi|115519239|gb|ABJ07223.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisA53]
          Length = 150

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+   ++G RV VQ  SE   D+L+ +LWT+++D FLPH
Sbjct: 1   MTEVLFYHLQGVTVEKVLPSLLEKSLQRGWRVVVQSTSEERTDALDTHLWTYREDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D    ++ QP++L     N N +T+RFL+D A++   D+  Y+++V + N DD 
Sbjct: 61  ATWRVAD----AAQQPIVLVADEGNPNGATVRFLIDNAALP-ADIASYDRMVLVFNGDDD 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            ++   RA W + K  G+
Sbjct: 116 EAIALARAAWTASKAKGF 133


>gi|220925407|ref|YP_002500709.1| DNA polymerase III subunit chi HolC [Methylobacterium nodulans ORS
           2060]
 gi|219950014|gb|ACL60406.1| DNA polymerase III chi subunit HolC [Methylobacterium nodulans ORS
           2060]
          Length = 150

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+  RV++Q  SE    +L+++LWT+  + FLPH
Sbjct: 1   MTEILFYHMQRQPLESVLPSLLEKSLERRWRVAIQATSEERLQALDDHLWTFSDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   E D ++ QPV+LT+   N N ++IRFLVD A +   D   Y ++  + +  DQ 
Sbjct: 61  GTD--REPDPAT-QPVVLTLREANPNGASIRFLVDGAPLP-EDAGSYARICILFDGTDQD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L + R  WR+ K +G++
Sbjct: 117 ALLFAREQWRAAKGAGHS 134


>gi|218516793|ref|ZP_03513633.1| DNA polymerase III subunit chi [Rhizobium etli 8C-3]
          Length = 104

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 6/109 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEK 108
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A     D   YE+
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YER 104


>gi|91977432|ref|YP_570091.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB5]
 gi|91683888|gb|ABE40190.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB5]
          Length = 150

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ GSE   ++L+ +LWT++ D FLPH
Sbjct: 1   MTDVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSGSEERTETLDAHLWTYRDDSFLPH 60

Query: 60  GVD-VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D    ++ QP++LT    N N + +RFL+D  ++   D + YE++V + + DD 
Sbjct: 61  ATSRVAD----AAHQPIVLTAEEGNPNAAMVRFLLDNVALP-ADAESYERMVLLFDGDDD 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            ++   R  W+  K+ G+
Sbjct: 116 DAVAMARVAWKQSKSRGF 133


>gi|298291098|ref|YP_003693037.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506]
 gi|296927609|gb|ADH88418.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506]
          Length = 148

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY  ++   E  L  LL+   E+G R +VQ  S    ++L++ LWT+ +  FLPH
Sbjct: 1   MTEVFFYHLQSRPLEAALPQLLEKCLERGWRCTVQSSSPERIEALDQLLWTYDEASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   +   S  QP+LLT S  N N +T+RF +D AS    D+  Y +V+ + + +D  
Sbjct: 61  GTDRQPD---SGRQPILLTTSESNPNGATVRFFIDSASA--PDLSPYARVIHLFDGNDSD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L+  R  WR  +++G+
Sbjct: 116 ALDHARTAWREARSAGH 132


>gi|316933710|ref|YP_004108692.1| DNA polymerase III subunit chi HolC [Rhodopseudomonas palustris
           DX-1]
 gi|315601424|gb|ADU43959.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris
           DX-1]
          Length = 150

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ  SE   D+L+ +LWT+++D FLPH
Sbjct: 1   MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDGHLWTYREDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D    ++ QP+LLT    N N + +RFLVD A++   D D YE++V + N DD 
Sbjct: 61  ATWRVAD----AAQQPILLTAGDGNPNGAKVRFLVDNAALP-EDSDSYERMVLLFNGDDD 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            ++   R  W+  K   +
Sbjct: 116 EAVAMARDAWKQCKARAF 133


>gi|148255230|ref|YP_001239815.1| DNA polymerase III subunit chi [Bradyrhizobium sp. BTAi1]
 gi|146407403|gb|ABQ35909.1| DNA polymerase III, chi subunit [Bradyrhizobium sp. BTAi1]
          Length = 150

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   E+G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D  D    QP++L +   N N + +RFLVD A +   D   YE++V + N DD 
Sbjct: 61  ATWRVADVAD----QPIVLAVEESNPNQANVRFLVDNAPL-PSDAHTYERMVLVFNGDDD 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            +L   RA W   K  G+
Sbjct: 116 EALAAARAAWTDCKTRGF 133


>gi|39936122|ref|NP_948398.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris CGA009]
 gi|192291840|ref|YP_001992445.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris TIE-1]
 gi|39649976|emb|CAE28500.1| hypothetical protein RPA3059 [Rhodopseudomonas palustris CGA009]
 gi|192285589|gb|ACF01970.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris
           TIE-1]
          Length = 150

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDSHLWTYRDDSFLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
               V D    ++ QP+LLT    N N + +RFLVD A++   D   YE++V + N DD 
Sbjct: 61  ATWRVAD----AAHQPILLTTGEGNPNGAKVRFLVDNAAL-PEDSGSYERMVLLFNGDDD 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
            ++   R  W+  K   +
Sbjct: 116 EAVAMARDAWKQCKAKAF 133


>gi|323137701|ref|ZP_08072777.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242]
 gi|322396998|gb|EFX99523.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242]
          Length = 159

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 13/143 (9%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   N   E  L VLL+    +G RV +Q  SE     L++YLW+++ + FLPH
Sbjct: 1   MPEIAFYHHTNSTLEQTLPVLLEKSLARGWRVVIQAASEARLRRLDQYLWSYRPESFLPH 60

Query: 60  GVDVGDEGDFSS-FQPVLLTISSLNANTSTIRFLVDEASMHIG-----DVDYYEKVVFII 113
           G     + D S   QP+ LT ++ N N + +RF V+ A  HI      D    E+ V + 
Sbjct: 61  GT----KADASPQTQPIYLTCAADNPNGADVRFFVEGA--HIAPVLQSDAAPRERAVLLF 114

Query: 114 NTDDQGSLEWGRAHWRSLKNSGY 136
           + +D+  L   RA W+ L+++G+
Sbjct: 115 SGEDEAELAGARAQWKELRDAGH 137


>gi|121602532|ref|YP_988824.1| DNA polymerase III subunit chi [Bartonella bacilliformis KC583]
 gi|120614709|gb|ABM45310.1| DNA polymerase III, chi subunit [Bartonella bacilliformis KC583]
          Length = 149

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY        N+L VL++       RV++QC +E  RD+++++LW +    F+ H
Sbjct: 1   MVDILFYHLTQSTPENVLPVLVERALNNFDRVTIQCINEERRDAMDKHLWVYADGAFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +     ++   QPV LT  + N N STIRFL++ A     D+  Y+++V + ++ D+ 
Sbjct: 61  GTEC---DEYPDLQPVFLTTGNENPNNSTIRFLIEGAV--CSDIHSYQRLVVMFDSRDET 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   RA W++ K   +
Sbjct: 116 QLNTARAQWKNYKAQNH 132


>gi|239831523|ref|ZP_04679852.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301]
 gi|239823790|gb|EEQ95358.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301]
          Length = 149

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV++Q  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLARGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT S  N N +T+RFLV+ A +   D   YE++V + +  DQ 
Sbjct: 61  GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLEQADA--YERLVVMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W+S K   +
Sbjct: 116 QLDIARGQWKSFKAENH 132


>gi|188584381|ref|YP_001927826.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001]
 gi|179347879|gb|ACB83291.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001]
          Length = 150

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+G + ++Q  SE    +L++ LWT+  + FLPH
Sbjct: 1   MTEILFYHLQRQPLEKVLPNLLEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   +   ++ QPV+LT+   N N ++IRFLV+ A +   D   Y+++  + +  D  
Sbjct: 61  GTDRDTD---AASQPVVLTLRETNPNAASIRFLVEGAEL-PEDAGSYQRICILFDGTDTD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR  K +G+A
Sbjct: 117 ALLHAREQWRGAKAAGHA 134


>gi|163854052|ref|YP_001642095.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens
           PA1]
 gi|218532995|ref|YP_002423811.1| DNA polymerase III chi subunit HolC [Methylobacterium
           chloromethanicum CM4]
 gi|254564020|ref|YP_003071115.1| hypothetical protein METDI5706 [Methylobacterium extorquens DM4]
 gi|163665657|gb|ABY33024.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens
           PA1]
 gi|218525298|gb|ACK85883.1| DNA polymerase III chi subunit HolC [Methylobacterium
           chloromethanicum CM4]
 gi|254271298|emb|CAX27310.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 150

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L++   E+G + ++Q  SE    +L++ LWT+  + FLPH
Sbjct: 1   MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   +   ++ QPV+LT+   N N ++IRFLV+ A +   D + Y+++  + +  D  
Sbjct: 61  GTDRDTD---AASQPVVLTLRETNPNGASIRFLVEGAELP-EDAESYQRICILFDGTDTD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR  K +G+A
Sbjct: 117 ALLHAREQWRGAKAAGHA 134


>gi|254502537|ref|ZP_05114688.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii
           DFL-11]
 gi|222438608|gb|EEE45287.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii
           DFL-11]
          Length = 150

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 5/111 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
           E+  +V VQ GS+   ++L+ +LWT++ D FLPHG        ++  QP+ LT    N N
Sbjct: 28  ERNWKVVVQTGSQERCNALDAHLWTYQDDSFLPHGTKA---DGYAEHQPIYLTFEQDNPN 84

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
            + +RFLVD A+     +D Y++ +++ + +DQG+++  R  W+  K+SG+
Sbjct: 85  EADVRFLVDRAAPPT--LDPYKRAIYMFDGNDQGAVDEARTAWKEAKSSGF 133


>gi|240141506|ref|YP_002965986.1| hypothetical protein MexAM1_META1p5105 [Methylobacterium extorquens
           AM1]
 gi|240011483|gb|ACS42709.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 150

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L++   E+G + ++Q  SE    +L++ LWT+  + FLPH
Sbjct: 1   MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   +   ++ QPV+LT+   N N ++IRFLV+ A +   D + Y+++  + +  D  
Sbjct: 61  GTDRDTD---AARQPVVLTLRETNPNGASIRFLVEGAELP-EDAESYQRICILFDGTDTD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR  K +G+A
Sbjct: 117 ALLHAREQWRGAKAAGHA 134


>gi|90419504|ref|ZP_01227414.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336441|gb|EAS50182.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 150

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 7/139 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+    +G RV VQ  SE  RD+L+ +LW ++ + FLPH
Sbjct: 1   MTEVLFYHLTQSRLEEALPDLLEKSLGRGWRVVVQFSSEERRDALDHHLWVYRDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G D    G   + QP+LLT+ +   AN   +RFLVD A      ++ Y + V++ +  D 
Sbjct: 61  GSDSDSSG---ALQPILLTVEAEQKANDPQVRFLVDGAVP--ASLEGYVRAVYLFDGHDA 115

Query: 119 GSLEWGRAHWRSLKNSGYA 137
             L+  R+ W+  K +G+A
Sbjct: 116 EQLDLARSRWKVEKAAGHA 134


>gi|114704777|ref|ZP_01437685.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506]
 gi|114539562|gb|EAU42682.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506]
          Length = 150

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LLQ    +G RV VQC SE  RDSL+  LWT+ ++ FLPH
Sbjct: 1   MAEVLFYHLTESRLEDALPELLQRSLARGWRVVVQCTSEERRDSLDNVLWTFSEESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLN-ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G D   E    S QP+LLT  +   AN   +RF+VD A+   GD+  Y + V++ +  D 
Sbjct: 61  GTDA--EAHPES-QPILLTTRADQFANKPDVRFMVDGAT--PGDLTGYIRGVYMFDAFDT 115

Query: 119 GSLEWGRAHWRSLKNSGY 136
             +   R  W+  K++G+
Sbjct: 116 DQMAHAREQWQVEKSAGH 133


>gi|153009926|ref|YP_001371141.1| DNA polymerase III subunit chi [Ochrobactrum anthropi ATCC 49188]
 gi|151561814|gb|ABS15312.1| DNA polymerase III chi subunit HolC [Ochrobactrum anthropi ATCC
           49188]
          Length = 149

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV++Q  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT S  N N +T+RFLV+ A +     D YE++V + +  DQ 
Sbjct: 61  GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLE--QADAYERLVVMFDGHDQD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W++ K   +
Sbjct: 116 QLDIARGQWKNFKAGSH 132


>gi|225627187|ref|ZP_03785225.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo]
 gi|225618022|gb|EEH15066.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo]
          Length = 165

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 8/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+LN  LWT+    F+ H
Sbjct: 17  MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 76

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118
           G D     +    QPVLLT +  N N +T+RFLV+ A +   GD   YE++V + +  DQ
Sbjct: 77  GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 130

Query: 119 GSLEWGRAHWRSLKNSGY 136
             L+  R  W++ K   +
Sbjct: 131 DQLDIARTQWKAFKAENH 148


>gi|256159415|ref|ZP_05457193.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1]
 gi|256254710|ref|ZP_05460246.1| DNA polymerase III subunit chi [Brucella ceti B1/94]
 gi|260168441|ref|ZP_05755252.1| DNA polymerase III subunit chi [Brucella sp. F5/99]
 gi|261221890|ref|ZP_05936171.1| DNA polymerase III subunit chi [Brucella ceti B1/94]
 gi|261757903|ref|ZP_06001612.1| DNA polymerase III chi subunit [Brucella sp. F5/99]
 gi|265997853|ref|ZP_06110410.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1]
 gi|260920474|gb|EEX87127.1| DNA polymerase III subunit chi [Brucella ceti B1/94]
 gi|261737887|gb|EEY25883.1| DNA polymerase III chi subunit [Brucella sp. F5/99]
 gi|262552321|gb|EEZ08311.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1]
          Length = 149

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 8/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+LN  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118
           G D     +    QPVLLT +  N N +T+RFLV+ A +   GD   YE++V + +  DQ
Sbjct: 61  GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 114

Query: 119 GSLEWGRAHWRSLKNSGY 136
             L+  R  W++ K   +
Sbjct: 115 DQLDIARTQWKAFKAENH 132


>gi|217978369|ref|YP_002362516.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2]
 gi|217503745|gb|ACK51154.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2]
          Length = 151

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    ++  +   +  L  L++   EKG RV VQ  SE    +L+++LWT++ D FL HG
Sbjct: 1   MEIWFYHLQRQSLDQALPALIEKSLEKGWRVVVQATSEERLAALDQHLWTYRDDSFLAHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQG 119
             V  +GD    QPV L+  + N N + +R  ++ A +    D   YE+ +   N +D  
Sbjct: 61  RSVDGDGD---LQPVYLSTGAENPNGARLRIFIEGAPIAASLDAGPYERALSAFNGNDAD 117

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L   R  W+ LK+ G+A
Sbjct: 118 ELAAARTQWKELKDRGFA 135


>gi|17987543|ref|NP_540177.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. 16M]
 gi|237815141|ref|ZP_04594139.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A]
 gi|17983245|gb|AAL52441.1| DNA polymerase iii, chi subunit [Brucella melitensis bv. 1 str.
           16M]
 gi|237789978|gb|EEP64188.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A]
          Length = 165

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 8/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 17  MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118
           G D     +    QPVLLT +  N N +T+RFLV+ A +   GD   YE++V + +  DQ
Sbjct: 77  GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 130

Query: 119 GSLEWGRAHWRSLKNSGY 136
             L+  R  W++ K   +
Sbjct: 131 DQLDIARTQWKAFKAENH 148


>gi|306838748|ref|ZP_07471582.1| DNA polymerase III subunit chi [Brucella sp. NF 2653]
 gi|306842044|ref|ZP_07474717.1| DNA polymerase III subunit chi [Brucella sp. BO2]
 gi|306287885|gb|EFM59305.1| DNA polymerase III subunit chi [Brucella sp. BO2]
 gi|306406150|gb|EFM62395.1| DNA polymerase III subunit chi [Brucella sp. NF 2653]
          Length = 165

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 8/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 17  MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118
           G D     +    QPVLLT +  N N +T+RFLV+ A +   GD   YE++V + +  DQ
Sbjct: 77  GTDKEPNPE---HQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 130

Query: 119 GSLEWGRAHWRSLKNSGY 136
             L+  R  W++ K   +
Sbjct: 131 DQLDIARTQWKAFKAENH 148


>gi|23501577|ref|NP_697704.1| DNA polymerase III subunit chi [Brucella suis 1330]
 gi|62289652|ref|YP_221445.1| DNA polymerase III subunit chi [Brucella abortus bv. 1 str. 9-941]
 gi|82699579|ref|YP_414153.1| DNA polymerase III subunit chi [Brucella melitensis biovar Abortus
           2308]
 gi|148559893|ref|YP_001258671.1| DNA polymerase III subunit chi [Brucella ovis ATCC 25840]
 gi|161618659|ref|YP_001592546.1| DNA polymerase III subunit chi [Brucella canis ATCC 23365]
 gi|163842960|ref|YP_001627364.1| DNA polymerase III subunit chi [Brucella suis ATCC 23445]
 gi|189023901|ref|YP_001934669.1| DNA polymerase III subunit chi [Brucella abortus S19]
 gi|225852210|ref|YP_002732443.1| DNA polymerase III subunit chi [Brucella melitensis ATCC 23457]
 gi|254688961|ref|ZP_05152215.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870]
 gi|254693443|ref|ZP_05155271.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya]
 gi|254697096|ref|ZP_05158924.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701473|ref|ZP_05163301.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513]
 gi|254704020|ref|ZP_05165848.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686]
 gi|254707607|ref|ZP_05169435.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10]
 gi|254709811|ref|ZP_05171622.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94]
 gi|254718825|ref|ZP_05180636.1| DNA polymerase III subunit chi [Brucella sp. 83/13]
 gi|254729991|ref|ZP_05188569.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292]
 gi|256031302|ref|ZP_05444916.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1]
 gi|256044382|ref|ZP_05447286.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060815|ref|ZP_05450975.1| DNA polymerase III subunit chi [Brucella neotomae 5K33]
 gi|256113225|ref|ZP_05454093.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str.
           Ether]
 gi|256257210|ref|ZP_05462746.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68]
 gi|256264282|ref|ZP_05466814.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369124|ref|YP_003106632.1| DNA polymerase III subunit chi [Brucella microti CCM 4915]
 gi|260545597|ref|ZP_05821338.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038]
 gi|260563734|ref|ZP_05834220.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M]
 gi|260566732|ref|ZP_05837202.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40]
 gi|260754451|ref|ZP_05866799.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870]
 gi|260757670|ref|ZP_05870018.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292]
 gi|260761497|ref|ZP_05873840.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883480|ref|ZP_05895094.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68]
 gi|261213697|ref|ZP_05927978.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya]
 gi|261315096|ref|ZP_05954293.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10]
 gi|261317349|ref|ZP_05956546.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94]
 gi|261324807|ref|ZP_05964004.1| DNA polymerase III subunit chi [Brucella neotomae 5K33]
 gi|261752016|ref|ZP_05995725.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513]
 gi|261754675|ref|ZP_05998384.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686]
 gi|265983811|ref|ZP_06096546.1| DNA polymerase III subunit chi [Brucella sp. 83/13]
 gi|265988387|ref|ZP_06100944.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1]
 gi|265990801|ref|ZP_06103358.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994637|ref|ZP_06107194.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str.
           Ether]
 gi|294852052|ref|ZP_06792725.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026]
 gi|297248059|ref|ZP_06931777.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196]
 gi|306845290|ref|ZP_07477866.1| DNA polymerase III subunit chi [Brucella sp. BO1]
 gi|23347490|gb|AAN29619.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62195784|gb|AAX74084.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615680|emb|CAJ10667.1| DNA polymerase III chi subunit, HolC [Brucella melitensis biovar
           Abortus 2308]
 gi|148371150|gb|ABQ61129.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|161335470|gb|ABX61775.1| DNA polymerase III chi subunit HolC [Brucella canis ATCC 23365]
 gi|163673683|gb|ABY37794.1| DNA polymerase III chi subunit HolC [Brucella suis ATCC 23445]
 gi|189019473|gb|ACD72195.1| DNA polymerase III chi subunit, HolC [Brucella abortus S19]
 gi|225640575|gb|ACO00489.1| DNA polymerase III chi subunit HolC [Brucella melitensis ATCC
           23457]
 gi|255999284|gb|ACU47683.1| DNA polymerase III subunit chi [Brucella microti CCM 4915]
 gi|260097004|gb|EEW80879.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038]
 gi|260153750|gb|EEW88842.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M]
 gi|260156250|gb|EEW91330.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40]
 gi|260667988|gb|EEX54928.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292]
 gi|260671929|gb|EEX58750.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674559|gb|EEX61380.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870]
 gi|260873008|gb|EEX80077.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68]
 gi|260915304|gb|EEX82165.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya]
 gi|261296572|gb|EEY00069.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94]
 gi|261300787|gb|EEY04284.1| DNA polymerase III subunit chi [Brucella neotomae 5K33]
 gi|261304122|gb|EEY07619.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10]
 gi|261741769|gb|EEY29695.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513]
 gi|261744428|gb|EEY32354.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686]
 gi|262765750|gb|EEZ11539.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001585|gb|EEZ14160.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094542|gb|EEZ18351.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660584|gb|EEZ30845.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1]
 gi|264662403|gb|EEZ32664.1| DNA polymerase III subunit chi [Brucella sp. 83/13]
 gi|294820641|gb|EFG37640.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026]
 gi|297175228|gb|EFH34575.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196]
 gi|306274449|gb|EFM56256.1| DNA polymerase III subunit chi [Brucella sp. BO1]
 gi|326408709|gb|ADZ65774.1| DNA polymerase III chi subunit, HolC [Brucella melitensis M28]
 gi|326538433|gb|ADZ86648.1| DNA polymerase III chi subunit HolC [Brucella melitensis M5-90]
          Length = 149

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 8/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118
           G    D+      QPVLLT +  N N +T+RFLV+ A +   GD   YE++V + +  DQ
Sbjct: 61  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 114

Query: 119 GSLEWGRAHWRSLKNSGY 136
             L+  R  W++ K   +
Sbjct: 115 DQLDIARTQWKAFKAENH 132


>gi|240850233|ref|YP_002971626.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup]
 gi|240267356|gb|ACS50944.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup]
          Length = 148

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 4   LLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           +LFY        ++L  L++    +  +V++QC SE  RDS++ +LW +  + F+ HG +
Sbjct: 3   ILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSEEQRDSMDMHLWVYADESFIGHGTE 62

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
                 +S+FQPV LT    N N S IRFL++ A     ++D Y+++V I +  D   L 
Sbjct: 63  C---DQYSNFQPVFLTTGQENPNDSKIRFLIEGAV--CSNIDTYQRLVVIFDGRDDEQLS 117

Query: 123 WGRAHWRSLKNSGY 136
             RA W+  K   +
Sbjct: 118 LVRAQWKKYKMENH 131


>gi|209964868|ref|YP_002297783.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum
           centenum SW]
 gi|209958334|gb|ACI98970.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum
           centenum SW]
          Length = 149

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E +L  LL+   E+G R  V   SE   ++L ++LWTWK D FLPH
Sbjct: 1   MTDVRFYHLTRKTLEQSLPELLEKTLERGWRAVVLAASEERAEALAQHLWTWKPDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +G   + QPV L+ +    N + + FLVD A         YE+V  + + +D  
Sbjct: 61  G--TARDG-HPARQPVFLSATDERPNDANVLFLVDGAE--TARAPEYERVCDLFDGNDPD 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR+ K +G+A
Sbjct: 116 ALAAARQRWRTAKAAGHA 133


>gi|118590097|ref|ZP_01547500.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata
           IAM 12614]
 gi|118437069|gb|EAV43707.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata
           IAM 12614]
          Length = 150

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           +  + ++      E  L  LLQ   E+  +V VQ G+E    +L+ +LWT+  DGFLPHG
Sbjct: 3   VEVVFYHLLHKPLEMALPQLLQKCLERDWKVVVQTGTEERCSALDAHLWTFTDDGFLPHG 62

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                   +S  QP+ LT    N N + +RFLVD A+     +  Y++ +++ + +D  +
Sbjct: 63  TKA---DGYSEHQPIYLTADQDNPNDADVRFLVDRAT--PPPLTAYKRAIYMFDGNDTDA 117

Query: 121 LEWGRAHWRSLKNSGY 136
           ++  R  W+  K  G+
Sbjct: 118 VQEARNRWKEAKAEGF 133


>gi|254713815|ref|ZP_05175626.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1]
 gi|254717127|ref|ZP_05178938.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1]
 gi|261218942|ref|ZP_05933223.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1]
 gi|261321559|ref|ZP_05960756.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1]
 gi|260924031|gb|EEX90599.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1]
 gi|261294249|gb|EEX97745.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1]
          Length = 149

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 8/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-HIGDVDYYEKVVFIINTDDQ 118
           G    D+      QPVLLT +  N N +T+RFLV+ A +   GD   YE++V + +  DQ
Sbjct: 61  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKLEQAGD---YERLVVMFDGHDQ 114

Query: 119 GSLEWGRAHWRSLKNSGY 136
             L+  R  W + K   +
Sbjct: 115 DQLDIARTQWEAFKAENH 132


>gi|89054307|ref|YP_509758.1| DNA polymerase III subunit chi [Jannaschia sp. CCS1]
 gi|88863856|gb|ABD54733.1| DNA polymerase III chi subunit HolC [Jannaschia sp. CCS1]
          Length = 154

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 6   FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY   +   E  L VLL    + G RV+V+  ++ V D L+E LW   +DGFLPHG    
Sbjct: 6   FYHLTQAPLEVTLRVLLGKSLQAGWRVAVRGRTDAVLDRLDEQLWLVPEDGFLPHGR--- 62

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124
             GD  + QPVLLT      N  T    V+ AS+   +VD  ++V+ + +  D  +L+  
Sbjct: 63  AGGDHDAAQPVLLTTGPAG-NDPTCLVSVEGASIDAAEVDAMDRVMVLFDGHDDAALQTA 121

Query: 125 RAHWRSLKNSGYA 137
           R  W++L  +G A
Sbjct: 122 REQWKTLTAAGVA 134


>gi|319408321|emb|CBI81974.1| putative DNA polymerase III chi subunit [Bartonella schoenbuchensis
           R1]
          Length = 148

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 5/130 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  L ++  ++  E  L VL++    + +RV++QC SE  RD+++  LW + +  F+ HG
Sbjct: 1   MDILFYHLTQSTLEDILPVLVERAVARFERVTIQCISEEQRDAIDTRLWVYAEGSFIGHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
            +      + +FQPV LT    N N S IRFL++ A     D++ Y+++V I +  +   
Sbjct: 61  TEC---DKYPNFQPVFLTTGHENPNDSKIRFLIEGAVC--PDINIYQRLVVIFDGRNNEQ 115

Query: 121 LEWGRAHWRS 130
           L   RA W+ 
Sbjct: 116 LNLARAQWKE 125


>gi|307946746|ref|ZP_07662081.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4]
 gi|307770410|gb|EFO29636.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4]
          Length = 150

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 4   LLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           + ++      E  L  LL    ++  +V VQ GS+   D+L+ +LWT+  D FLPHG   
Sbjct: 6   VFYHLLHKPLEAALPQLLLKCLDRDCKVVVQTGSQERCDALDAHLWTFSDDSFLPHGTKA 65

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
               +   FQP+ LT    N N + +RFLVD A      +  Y++ +++ +  D+ ++  
Sbjct: 66  DGHAE---FQPIYLTCEDDNPNQADVRFLVDRAVR--PPLHGYQRAIYMFDGRDEEAVAE 120

Query: 124 GRAHWRSLKNSGY 136
            R +W+S K+ G+
Sbjct: 121 ARQNWKSAKSEGF 133


>gi|163868029|ref|YP_001609233.1| DNA polymerase III subunit chi [Bartonella tribocorum CIP 105476]
 gi|161017680|emb|CAK01238.1| putative DNA polymerase III chi subunit [Bartonella tribocorum CIP
           105476]
          Length = 148

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 6/130 (4%)

Query: 4   LLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           +LFY        ++L  L++    +  +V++QC S+  RDS++ +LW +  + F+ HG +
Sbjct: 3   ILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSKEQRDSIDMHLWVYADESFIGHGTE 62

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
                 +++ QPV LTI   N N S IRFL++ A     D++ Y+++V + +  +   L 
Sbjct: 63  C---DQYANLQPVFLTIGQENPNDSKIRFLIEGAV--CSDINVYQRLVVLFDGRNDEQLN 117

Query: 123 WGRAHWRSLK 132
           + RA W+  K
Sbjct: 118 FARAQWKKYK 127


>gi|328544009|ref|YP_004304118.1| DNA polymerase III, chi subunit protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413753|gb|ADZ70816.1| Putative DNA polymerase III, chi subunit protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 150

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 5   LFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           LFY  ++   E  L  LL    ++  RV VQ GS     +L+ +LWT+  D FLPHG   
Sbjct: 6   LFYHLQHQPLEAMLPGLLMKCLDRDWRVVVQTGSPERCAALDAHLWTFADDAFLPHGTAA 65

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
               +    QP+ LT +  N N +T+RFLVD A      +  YE+VV++ +  D  ++  
Sbjct: 66  DGHAE---DQPIFLTAAGDNPNRATVRFLVDRA--QPPPLAGYERVVYVFDGRDPEAVAE 120

Query: 124 GRAHWRSLKNSGY 136
            R  W+  K  G+
Sbjct: 121 ARLRWKEAKEQGF 133


>gi|260426697|ref|ZP_05780676.1| DNA polymerase III subunit chi [Citreicella sp. SE45]
 gi|260421189|gb|EEX14440.1| DNA polymerase III subunit chi [Citreicella sp. SE45]
          Length = 152

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL+     G RV V+  S    D L++ LW   ++GFLPH
Sbjct: 1   MGAAYFYHLTQRPLEATLPVLLEKSLSAGWRVVVRGTSPGRMDWLDQRLWLGPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  +   N ++    VD A +   +V   E+V  + +  D  
Sbjct: 61  GLS---GGPHDALQPVLLTTGAAMPNDASCLMAVDGAEVSPEEVGKLERVCILFDGHDHE 117

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L+  R  WR+L  +G A
Sbjct: 118 ALQAARGQWRALTGAGCA 135


>gi|126725338|ref|ZP_01741180.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150]
 gi|126704542|gb|EBA03633.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150]
          Length = 156

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   ++  E  L  ++      G RV V+  S+   D L++ LWT   DGFLPH
Sbjct: 1   MSATYFYHLTHEPLESALPKIIVKARAAGWRVVVRGTSDERLDWLDKQLWTQTADGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G F + QPVLLT SS   N +     +D A++   DV  +E++  + N ++  
Sbjct: 61  GRS---GGKFDADQPVLLTNSSETPNDAACLIAIDRAAISADDVAKFERICLMFNGNNGD 117

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L+  R  W++L + G+
Sbjct: 118 ALDDARTQWKTLSDQGF 134


>gi|167646494|ref|YP_001684157.1| DNA polymerase III subunit chi [Caulobacter sp. K31]
 gi|167348924|gb|ABZ71659.1| DNA polymerase III chi subunit HolC [Caulobacter sp. K31]
          Length = 153

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E  L  LL+    +G R  V+ G      +L+ +LWTW+ D FLPHG+D  DE   +  Q
Sbjct: 19  EQVLPELLEKTLGRGWRALVRGGDPARLRALDAHLWTWRDDSFLPHGLD--DE-PMADRQ 75

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           PVLLT    N N     FL+D A    GD+  +E+ + + +  D+ +L   R  W++ K 
Sbjct: 76  PVLLTDKLDNPNGGQALFLLDGA--EPGDLSGFERCILLFDGRDEEALRLARGRWKAFKG 133

Query: 134 SGY 136
           +G+
Sbjct: 134 AGH 136


>gi|16125938|ref|NP_420502.1| DNA polymerase III subunit chi [Caulobacter crescentus CB15]
 gi|221234701|ref|YP_002517137.1| DNA polymerase III subunit chi [Caulobacter crescentus NA1000]
 gi|13423106|gb|AAK23670.1| DNA polymerase III, chi subunit, putative [Caulobacter crescentus
           CB15]
 gi|220963873|gb|ACL95229.1| DNA polymerase III, chi subunit [Caulobacter crescentus NA1000]
          Length = 153

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 6   FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY   ++  E  L  LL+    +G +  V+ G  R  ++L+++LWTW++D FLPHG+   
Sbjct: 10  FYHLERSPLEAVLPELLEKTLGRGWKALVRGGDPRRIEALDQHLWTWREDSFLPHGL--- 66

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124
                +  QPVLLT +  N N+    FL+D A    GD+    + + + +  D  +L   
Sbjct: 67  ASEPMAERQPVLLTAAEGNPNSGDALFLIDGA--EPGDLSGVSRCILLFDGRDDQALAQA 124

Query: 125 RAHWRSLKNSGY 136
           R  W + K +G+
Sbjct: 125 RGRWSTFKKAGH 136


>gi|49474102|ref|YP_032144.1| DNA polymerase III subunit chi [Bartonella quintana str. Toulouse]
 gi|49239606|emb|CAF25963.1| hypothetical protein BQ04640 [Bartonella quintana str. Toulouse]
          Length = 153

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           RV++QC ++  RD+++ +LW +  + F+ HG +      + +FQPV LT    N N S I
Sbjct: 35  RVTIQCVNKERRDAIDMHLWVYADEAFIGHGTEC---DQYPNFQPVFLTTGQENPNDSKI 91

Query: 90  RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           RFL++ A     D+D Y+++V I +      L   RA W+  K   +
Sbjct: 92  RFLIEGAI--CSDIDAYQRLVVIFDDHSDEQLNLVRAQWKKYKMENH 136


>gi|254510554|ref|ZP_05122621.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11]
 gi|221534265|gb|EEE37253.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11]
          Length = 152

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58
           M  + FY   +   E  L VLL    + G R++V+ G++  R D L+E LW   ++GFLP
Sbjct: 1   MGAVYFYHLTRQPLERTLPVLLDKARQAGWRIAVR-GTDPARMDWLDEKLWLGPEEGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG      G   + QPVLLT     AN++     VD A +   +V   E+V  + +  D 
Sbjct: 60  HGRA---GGPHDAAQPVLLTTGPEAANSAACVMAVDGAPVEADEVTALERVCILFDGTDP 116

Query: 119 GSLEWGRAHWRSLKNSG 135
            +++  R  W++L  +G
Sbjct: 117 DAVQRARGQWKALTGAG 133


>gi|49475340|ref|YP_033381.1| DNA polymerase III subunit chi [Bartonella henselae str. Houston-1]
 gi|49238146|emb|CAF27354.1| hypothetical protein BH05460 [Bartonella henselae str. Houston-1]
          Length = 154

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 4   LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           +LFY   ++  E  L  L++    +  RV++QC S+  RD+++  LW +  + F+ HG +
Sbjct: 9   ILFYHLTQSTLEDILPTLVERALGRFSRVTIQCVSKERRDAIDTRLWVYADEAFIGHGTE 68

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
                 + +FQPV LT    N N S IRFL++ A     D++ Y+++V + +      L 
Sbjct: 69  C---DQYPNFQPVFLTTGQENPNDSKIRFLIEGAI--CSDINAYQRLVVLFDGQSDEQLH 123

Query: 123 WGRAHWRSLKNSGY 136
             RA W+  K   +
Sbjct: 124 IVRAQWKKYKMENH 137


>gi|56697303|ref|YP_167669.1| DNA polymerase III subunit chi [Ruegeria pomeroyi DSS-3]
 gi|56679040|gb|AAV95706.1| DNA polymerase III, chi subunit, putative [Ruegeria pomeroyi DSS-3]
          Length = 154

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58
           M    FY   +N  E  L VLL      G RV+V+ GS+  R   L+E LW    DGFLP
Sbjct: 1   MGAAYFYHLTRNPLEATLPVLLTKALGAGWRVAVR-GSDPGRLVWLDEKLWLGPDDGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+     G   + QPVLLT  +   N +     VD A++   +V   E+V  + +  D 
Sbjct: 60  HGLA---GGAHDADQPVLLTTGADAPNGARCVMSVDGAAVTPEEVAALERVCILFDGTDP 116

Query: 119 GSLEWGRAHWRSLKNSGYA 137
            ++E  R  WR+L  +G A
Sbjct: 117 AAVEAARGQWRALTAAGCA 135


>gi|260433489|ref|ZP_05787460.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417317|gb|EEX10576.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 153

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   ++  E+ L VLL    + G R++V+       D L+E LW   ++ FLPH
Sbjct: 1   MGAVYFYHLTRHPLEHTLPVLLDKARQAGWRIAVRGTDPARMDWLDERLWLGPEESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G   + QP+LLT     AN       VD A +   +V   E+V  + + +D  
Sbjct: 61  GRA---GGPHDAMQPILLTTGPEAANDPACLMAVDGAEVAADEVTALERVCILFDGNDPQ 117

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L+  R  W++L  +G A
Sbjct: 118 ALDHARGQWKALTAAGCA 135


>gi|126728785|ref|ZP_01744600.1| DNA polymerase III subunit chi [Sagittula stellata E-37]
 gi|126710715|gb|EBA09766.1| DNA polymerase III subunit chi [Sagittula stellata E-37]
          Length = 152

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58
           M  + FY   +   E  L +LL    E+G RV+V+ G++  R D L+  LW   ++GFLP
Sbjct: 1   MGAVFFYHLTRQPVEVTLGMLLTKSLERGWRVAVR-GTDPARLDWLDAKLWLEPEEGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+     G F + QPVLLT +    N       +D A +   + D  E+V  + +  D 
Sbjct: 60  HGLA---GGKFDAEQPVLLTTALEAPNEPACLIALDGAEIRPEETDALERVCILFDGGDG 116

Query: 119 GSLEWGRAHWRSLKNSG 135
            +++  R  W++L ++G
Sbjct: 117 AAVQAARGQWKALTSAG 133


>gi|85706344|ref|ZP_01037438.1| DNA polymerase III subunit chi [Roseovarius sp. 217]
 gi|85669117|gb|EAQ23984.1| DNA polymerase III subunit chi [Roseovarius sp. 217]
          Length = 152

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58
           M    FY   +   E  L +LL+     G RV V+ G +R R   L+E LW   +DGFLP
Sbjct: 1   MGAAYFYHLTRQPLEATLPMLLEKSLSVGWRVVVR-GRDRARMVWLDERLWLGPEDGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+  G +    + QPVLLT  S   N +     +D A +   +V   ++V  + + +D 
Sbjct: 60  HGLSGGPQ---DADQPVLLTTESARPNGAVCLMAIDAAEVSAQEVQMLDRVCILFDGNDD 116

Query: 119 GSLEWGRAHWRSLKNSG 135
            +++  R  W++L  +G
Sbjct: 117 AAVQAARGQWKTLTGAG 133


>gi|296446339|ref|ZP_06888284.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium
           OB3b]
 gi|296256112|gb|EFH03194.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium
           OB3b]
          Length = 155

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL+    +G R  VQ  S R   +++E LW++  + FLPH
Sbjct: 1   MTEVWFYHLQRRPLESALPKLLELSLARGWRAVVQAASPRRLATIDELLWSYDPESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVD--EASMHIGD--VDYYEKVVFIINT 115
           G     +GD  S QPV LT+   N N + +R  ++  EA+  + D      ++ + + + 
Sbjct: 61  GTQ--RDGDPQS-QPVFLTLLPDNPNRADVRVFIESAEAAPVLADPAAAPTQRAMVMFDG 117

Query: 116 DDQGSLEWGRAHWRSLKNSGY 136
           +D+ +L+  RA WR+LK +G+
Sbjct: 118 NDETALQNARAQWRTLKEAGH 138


>gi|114766155|ref|ZP_01445159.1| DNA polymerase III subunit chi [Pelagibaca bermudensis HTCC2601]
 gi|114541615|gb|EAU44657.1| DNA polymerase III subunit chi [Roseovarius sp. HTCC2601]
          Length = 152

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L +LL+     G RV+V+       D L++ LW   +DGFLPH
Sbjct: 1   MGAAYFYHLTQRPLEATLPLLLEKSLAAGWRVAVRGTDPGRIDWLDQRLWMGPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G   G  G   + QPVLLT+     N       VD A +   +V+  E+V  + +  D  
Sbjct: 61  G-QAG--GKHDALQPVLLTVQEALPNDPACLMAVDGAGVAPEEVNRLERVCILFDGHDGM 117

Query: 120 SLEWGRAHWRSLKNSG 135
           +L+  R  WR+L  +G
Sbjct: 118 ALDAARGQWRALTGAG 133


>gi|319405496|emb|CBI79115.1| putative DNA polymerase III chi subunit [Bartonella sp. AR 15-3]
          Length = 149

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   K+  +  L VL++   ++  R+++QC S+   + ++  LW +  + F+ H
Sbjct: 1   MVDILFYHLTKSTLKDTLPVLVERALKRFGRITIQCMSKEQCNFIDTCLWVYSDESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +     ++   QPV LT    N N S +RFL++ A     D+D Y+++V + +  +  
Sbjct: 61  GTEY---DNYPDLQPVFLTTGQENPNDSQVRFLIEGAV--CSDIDIYQRIVIMFDGHNDA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   R  W+  K   Y
Sbjct: 116 QLNLIREQWKDYKTKNY 132


>gi|329890118|ref|ZP_08268461.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|90403466|dbj|BAE91932.1| DNA polymerase III chi subunit [Brevundimonas diminuta]
 gi|328845419|gb|EGF94983.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 153

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 5/119 (4%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  LL+   ++G R  ++  +    D ++E LWT++ D FLPHG     +G  ++ QPVL
Sbjct: 22  LPTLLERTLQRGWRALIRGATSHRLDDIDELLWTYRDDSFLPHGR---ADGGHAARQPVL 78

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           L+ S  N N +   F+VD++ +  G    + +   I +  D+ +L   R  WR+LK  G
Sbjct: 79  LSESGENLNGAQALFIVDDSEL--GATQEFARCFIIFDGRDEQALNHARGRWRTLKADG 135


>gi|319898732|ref|YP_004158825.1| DNA polymerase III chi subunit [Bartonella clarridgeiae 73]
 gi|319402696|emb|CBI76242.1| putative DNA polymerase III chi subunit [Bartonella clarridgeiae
           73]
          Length = 149

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   K+  +  L VL++   ++  R+++QC S+   + ++  LW +  + F+ H
Sbjct: 1   MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCVSKEQCNFIDTCLWVYADESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +      +   QPV LTI   N N S +RFL++ A     D+D Y+++V + +  +  
Sbjct: 61  GTEY---DKYPDLQPVFLTIGQENPNGSKVRFLIEGAI--CSDIDIYQRLVIMFDGHNDE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   R  W+  K   Y
Sbjct: 116 QLNLIRKQWKEYKTKNY 132


>gi|319404057|emb|CBI77645.1| putative DNA polymerase III chi subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 149

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   K+  +  L VL++   ++  R+++QC ++   + ++  LW +  + F+ H
Sbjct: 1   MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +      +   QPV LT    N N S +RFL+D A     DVD Y+++V + +  +  
Sbjct: 61  GTEY---DKYPDLQPVFLTTGQENPNDSKVRFLIDGAV--CSDVDIYQRLVIMFDGHNDT 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   R  W+  K   Y
Sbjct: 116 QLNLIREQWKDYKTKNY 132


>gi|149914660|ref|ZP_01903190.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b]
 gi|149811453|gb|EDM71288.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b]
          Length = 152

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58
           M    FY   ++  E  L +LL   ++ G RV V+ G + VR + L+E LW   ++GFLP
Sbjct: 1   MGAAFFYHLTRHPLETTLPMLLGKAHQAGWRVIVR-GHDPVRIEWLDERLWLGPEEGFLP 59

Query: 59  HGV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           HG+     E D    QPVLLT+S    N +     VD A +   +V   E+V  + +  D
Sbjct: 60  HGLAGRPHEAD----QPVLLTVSEEIPNGALCLMAVDGAEVAPDEVSRLERVCILFDGHD 115

Query: 118 QGSLEWGRAHWRSLKNSGYA 137
             +L+  R  W++L ++G A
Sbjct: 116 DAALQKARGQWKALTSAGCA 135


>gi|302383685|ref|YP_003819508.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194313|gb|ADL01885.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 153

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  LL    ++G R  ++      R  +++ LW+W+ D FL HG     +   ++ QP+L
Sbjct: 22  LPELLDKTLQRGWRARIRVADPDRRAEIDDTLWSWRADSFLAHGQ---ADQPHAARQPIL 78

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           LT  + N N S   F+VD + M +   + +E+   I +  D+ +L+  R  W++LK  G
Sbjct: 79  LTAGTENPNASQALFIVDGSDMTV--TEEFERCFIIFDGRDEAALQTARDRWKALKGQG 135


>gi|254418859|ref|ZP_05032583.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp.
           BAL3]
 gi|196185036|gb|EDX80012.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp.
           BAL3]
          Length = 152

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  LL+   E+G R  ++       D ++E LW++  + FLPHG       D    QPVL
Sbjct: 21  LPTLLEKTLERGWRALIKSAHAHRLDDVDERLWSFHDESFLPHGRADQPHAD---RQPVL 77

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           L+ S  N N +   F+VD+A +  G  + +E+   I +  D+ +L++ R  W++LK  G
Sbjct: 78  LSESGENLNGAQALFIVDDAEL--GVTEGFERCFIIFDGRDEPALQYARGRWKTLKEQG 134


>gi|315500010|ref|YP_004088813.1| DNA polymerase iii chi subunit holc [Asticcacaulis excentricus CB
           48]
 gi|315418022|gb|ADU14662.1| DNA polymerase III chi subunit HolC [Asticcacaulis excentricus CB
           48]
          Length = 149

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 5/113 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           LL+   +KG +  V   +  +   L+++LW ++ + FLPHG++   E   ++ QPVLL  
Sbjct: 21  LLEKTLQKGWKAYVLGEAGDMLVGLDQHLWAYRDEAFLPHGLESEPE---AARQPVLLGD 77

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
           S  NAN + + F V  ++M++ ++  Y++ + +    D+  L W RA W++LK
Sbjct: 78  SGGNANAADVLFSV--SAMNLPELSPYQRCLILFEGQDETHLNWARAQWKALK 128


>gi|149201831|ref|ZP_01878805.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035]
 gi|149144879|gb|EDM32908.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035]
          Length = 152

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58
           M  + FY   +   E  L +LL+     G RV V+ G E  R   L+E LW   +DGFLP
Sbjct: 1   MGAVYFYHLTRQPLEATLPMLLEKSLGAGWRVVVR-GREAARLVWLDERLWLGPEDGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HGV     G   + QPVLLT      N +     +D A +   +V   ++V  + + +D 
Sbjct: 60  HGVA---GGAHDADQPVLLTTDHARPNGAACVMAIDGADVSGEEVQSLQRVCILFDGNDD 116

Query: 119 GSLEWGRAHWRSLKNSGYA 137
            +++  R  W++L  +G A
Sbjct: 117 AAVQVARGQWKALTGAGCA 135


>gi|86138695|ref|ZP_01057268.1| DNA polymerase III subunit chi [Roseobacter sp. MED193]
 gi|85824755|gb|EAQ44957.1| DNA polymerase III subunit chi [Roseobacter sp. MED193]
          Length = 152

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58
           M +  FY   +   +  L VLLQ     G R++V+ G +  R S L+E LW    D FL 
Sbjct: 1   MGSAYFYHLTQRPLQETLPVLLQKARGAGWRIAVR-GQQADRMSWLDEVLWQGSADSFLA 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+     G   + QP+LLT +  +AN       VD A +   +V   E+V  + + +++
Sbjct: 60  HGLA---GGPHDALQPILLTTTQDSANQPECLMTVDGAEVTAAEVQALERVCILFDGNNE 116

Query: 119 GSLEWGRAHWRSLKNSG 135
            +L+  R+ W+SL  +G
Sbjct: 117 TALQQARSQWKSLTGAG 133


>gi|84500992|ref|ZP_00999227.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597]
 gi|84391059|gb|EAQ03477.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597]
          Length = 154

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E  L  LL      G R++V+  S    D L++ LW    D FLPHGV   + G   + Q
Sbjct: 15  ERTLPSLLGKALGAGWRIAVRGRSRDRLDWLDQKLWLGPDDDFLPHGV---EGGAHDALQ 71

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           P+LLT  +  AN       +D A +   DV   ++V  + + +D  +LE  RA WR++  
Sbjct: 72  PILLTTGT-AANDPACLMAIDGAEVAASDVSGMQRVCILFDGNDTEALEMARAQWRTITA 130

Query: 134 SG 135
           +G
Sbjct: 131 AG 132


>gi|119383655|ref|YP_914711.1| DNA polymerase III subunit chi [Paracoccus denitrificans PD1222]
 gi|119373422|gb|ABL69015.1| DNA polymerase III chi subunit, HolC [Paracoccus denitrificans
           PD1222]
          Length = 149

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 1   MRTLLFYRFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRD-SLNEYLWTWKKDGFLP 58
           M + LFY         LL +L+    + G RV ++ G +R R  +L+E LW   ++GFLP
Sbjct: 1   MGSALFYHLTRSGPAQLLPMLIGKSLQAGWRVELR-GRDRARQVALDEALWL--REGFLP 57

Query: 59  HGVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           HG+     G   + QPVLLT+     AN +     +D A +   +    E+   I + +D
Sbjct: 58  HGL---AGGPHDARQPVLLTVEGQAAANAARCLIALDGAEVSGAECLALERACLIFDGND 114

Query: 118 QGSLEWGRAHWRSLKNSGYAPD 139
             +LE  RA WR+LK    A +
Sbjct: 115 PEALERARAQWRALKAEDVAAE 136


>gi|304392002|ref|ZP_07373944.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130]
 gi|303296231|gb|EFL90589.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130]
          Length = 151

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 31  VSVQCGSERVRDSLNEYLWTWKKDGFLPH---GVDVGDEGDFSSFQPVLLTISSLNANTS 87
           V +Q G E  RD L+E LWT+  + FLPH   G   G+ GD     P+ LT      N +
Sbjct: 32  VVIQAGQEAARDELDELLWTYNDESFLPHWREGNGPGEGGD----NPIWLTTGDERPNNA 87

Query: 88  TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
            +RF+V  A   +   + YE+V+ + +  D  ++   R+ W+ LK +G+
Sbjct: 88  AVRFVV--AGATVSKPEDYERVITMFDGYDDNAVAQARSQWKELKAAGH 134


>gi|319407070|emb|CBI80707.1| putative DNA polymerase III chi subunit [Bartonella sp. 1-1C]
          Length = 149

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   K+  +  L VL++   ++  R+++QC ++   + ++  LW +  + F+ H
Sbjct: 1   MVDIFFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +      +   QPV LT    N N S +RFL+D A     D++ Y++VV + +  +  
Sbjct: 61  GTEY---DRYPELQPVFLTTGQENPNDSKVRFLIDGAV--CSDINIYQRVVIMFDGHNDM 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   R  W+  K   Y
Sbjct: 116 QLNLIREQWKDYKTKNY 132


>gi|89070354|ref|ZP_01157661.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus
           HTCC2516]
 gi|89044001|gb|EAR50176.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus
           HTCC2516]
          Length = 151

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY    D  E  L +LL+     G R  V+  S  +   L+E LW   +DGFLPH
Sbjct: 1   MGAAYFYHLTRDPLERTLPMLLEKARTVGWRCEVRATSRALLARLDEQLWLHPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  +   N +     V+ A +   +V   E+   + +  D G
Sbjct: 61  GL---AGGPHDADQPVLLT-DTRGTNNAACLLAVEGAEVSAEEVQALERTCILFDGADPG 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +++  R  W  L ++G A
Sbjct: 117 AVQIARGQWARLTDAGCA 134


>gi|197105166|ref|YP_002130543.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1]
 gi|196478586|gb|ACG78114.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1]
          Length = 148

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   +  L  LL+   ++G +  V+       + L+ +LW+++ D FLPH
Sbjct: 1   MTEVWFYHLERTGLDQALPELLEKTLQRGWKAIVRTPVPERVEHLDGWLWSYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
               G+ G  ++ QP+LLT+   N N +   FLVD A    GD+  Y++ V + +  D  
Sbjct: 61  -APAGEPG--AARQPILLTMDFENPNGADALFLVDGA--EPGDLAGYQRCVVLFDGADPA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L   R+ W  +K  G++
Sbjct: 116 QLSLARSQWSQVKAKGFS 133


>gi|110680304|ref|YP_683311.1| DNA polymerase III subunit chi [Roseobacter denitrificans OCh 114]
 gi|109456420|gb|ABG32625.1| DNA polymerase III, chi subunit, putative [Roseobacter
           denitrificans OCh 114]
          Length = 155

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M   +FY   +   E  L++LL      G RV V+         L+E LW    D FLPH
Sbjct: 1   MGKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LL+ +S   N +T    VD A +   +V   ++V  + + +D  
Sbjct: 61  GL---AGGAHDARQPILLSTTSDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQ 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  W +LK +G A +
Sbjct: 118 ALDVARGQWSALKKAGAAAE 137


>gi|260576759|ref|ZP_05844744.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2]
 gi|259021011|gb|EEW24322.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2]
          Length = 155

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSL-NEYLWTWKKDGFLP 58
           M  +LFY   ++  E     LL    + G RV ++ G++  R +L +E LW   ++GFLP
Sbjct: 1   MVLVLFYHLTRSPVEATAAGLLSRALDLGWRVMLR-GTDPARLALLDERLWLGPEEGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+  G +    + QPVLL   ++  N +    LVD A    G+ +  E+V  + + +D 
Sbjct: 60  HGLQGGPQ---DADQPVLLGTGAIG-NAAHALMLVDGAEPLTGEAEALERVWVLFDGNDP 115

Query: 119 GSLEWGRAHWRSLKNSG 135
            +LE  RA W++L   G
Sbjct: 116 AALETARAQWKTLTAQG 132


>gi|159043741|ref|YP_001532535.1| DNA polymerase III subunit chi [Dinoroseobacter shibae DFL 12]
 gi|157911501|gb|ABV92934.1| DNA polymerase III chi subunit HolC [Dinoroseobacter shibae DFL 12]
          Length = 151

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   +  L VLL+     G RV V+  S    + L+E LW   ++GFLPH
Sbjct: 1   MGAVYFYHMTRTPLDATLPVLLEKSLAAGWRVLVRGTSGAELERLDELLWLRPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+  GD     + QPVLL + +  A    +   VD A +   +V    +   + +  D  
Sbjct: 61  GIAGGDR---DADQPVLLGVDAPLAGREAL-ICVDGAQVDPAEVAGLARASLLFDGGDAA 116

Query: 120 SLEWGRAHWRSLKNSG 135
           ++E  R  WR++  +G
Sbjct: 117 AVEAARGQWRAVTGAG 132


>gi|77463455|ref|YP_352959.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides 2.4.1]
 gi|77387873|gb|ABA79058.1| putative DNA polymerase III chi subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 152

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58
           M  ++FY   ++  E  L +LL     +G RV ++ G++RVR ++L+  LW   ++GFLP
Sbjct: 1   MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRVRLEALDLALWRVPEEGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+   + G   + QPVLL   ++  N +    L+D A     +    E+V  + +  D+
Sbjct: 60  HGM---EGGPHDAVQPVLLGTGAIG-NGAQALMLLDGAETQAAEAAPLERVWILFDGLDE 115

Query: 119 GSLEWGRAHWRSLKNSG 135
             L   R  W++L  +G
Sbjct: 116 AELARARGQWKALTGAG 132


>gi|83953616|ref|ZP_00962337.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1]
 gi|83841561|gb|EAP80730.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1]
          Length = 152

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 16  NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPV 75
            L +LL      G RV+V+   + + + L+  LW   +DGFLPHG+     G   + QPV
Sbjct: 17  TLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDGFLPHGLA---GGPHDAEQPV 73

Query: 76  LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           LLT  +   N ++  F +  A++   +V   ++V  + +  D  +L   R  W+SLK +G
Sbjct: 74  LLTTDTHAPNNASCVFSIHGAAVSAQEVAALDRVCILFDGLDDHALNVARDQWKSLKAAG 133


>gi|254477359|ref|ZP_05090745.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11]
 gi|214031602|gb|EEB72437.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11]
          Length = 154

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +      L VLL+     G R+ V+   +     L++ LW   +D FLPH
Sbjct: 1   MGAVYFYHLTRRPLAETLPVLLEKAMGAGWRIVVRGQDQERITWLDDRLWQGPEDRFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           GV  G        QPVLLT     A  +     VD A +   +V   E+V  + +  DQ 
Sbjct: 61  GVAGGPR---DHLQPVLLTTQPELAEGTHCLMAVDGADVTPAEVASLERVCILFDGTDQA 117

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W++L ++G A
Sbjct: 118 AVARARTQWKTLTDAGCA 135


>gi|99080792|ref|YP_612946.1| DNA polymerase III subunit chi [Ruegeria sp. TM1040]
 gi|99037072|gb|ABF63684.1| DNA polymerase III chi subunit HolC [Ruegeria sp. TM1040]
          Length = 154

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   +  L VLL      G R++V+         L++ LW      FLPH
Sbjct: 1   MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLAGDASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LLT +S  AN +     VD A +   +VD  E+V  + +  D  
Sbjct: 61  GIA---GGPHDALQPILLTTASEAANGADCVMSVDGAEVQPDEVDALERVCILFDGTDPE 117

Query: 120 SLEWGRAHWRSLKNSG 135
           +++  R  W++L  +G
Sbjct: 118 AVQHARGQWKNLTAAG 133


>gi|312114900|ref|YP_004012496.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220029|gb|ADP71397.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC
           17100]
          Length = 158

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L VL++    +G R S++  S    D+++  LWT+++D FLPHG       D    QPV 
Sbjct: 27  LPVLVEKTLARGWRASLRFSSAERLDAIDTALWTYREDSFLPHGTARDGHAD---RQPVF 83

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           LT+   N N + + FL++ A     + + + +V+ + +  D  +    R  WR  K +G
Sbjct: 84  LTLEEANPNNAEVLFLLEGARE--SEPERFVRVIRLFDDPDDEAKAIAREEWRGAKAAG 140


>gi|329850481|ref|ZP_08265326.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840796|gb|EGF90367.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis
           biprosthecum C19]
          Length = 149

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY  +    +  L  LL+   +KG R  V    +    +LN+ LW+++ D FL H
Sbjct: 1   MPDIWFYHLETTPLDQALPDLLEKVAQKGWRAYVHGHEDDKISALNDRLWSYRPDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G + GD  D    QPVLL  S   AN   +   V  +   + DV   E+ + + + +D  
Sbjct: 61  GRE-GD--DLEGHQPVLLGTSGRMANKPQVYLSV--SPTDLPDVSGLERCLIVFDGNDAE 115

Query: 120 SLEWGRAHWRSLKNSG 135
            L W R  W+ LK +G
Sbjct: 116 HLTWARGQWKQLKATG 131


>gi|295689674|ref|YP_003593367.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756]
 gi|295431577|gb|ADG10749.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756]
          Length = 154

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 6   FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY   ++  E  L  LL+    +G +  V+ G  +  ++L++ LWT+++D FLPHG+   
Sbjct: 11  FYHLERSPLEAVLPELLEKTLGRGWKALVRGGDLKRIEALDQQLWTYREDSFLPHGL--- 67

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124
                +  QPVLLT    N N     FL+D A    GD+    + + + +  D  +L   
Sbjct: 68  ASEPMAERQPVLLTAEEGNPNHGDAIFLIDGAD--PGDLSGVSRCILLFDGRDDQALAEA 125

Query: 125 RAHWRSLKNSGY 136
           R  W   K +G+
Sbjct: 126 RGRWSVFKKAGH 137


>gi|163735793|ref|ZP_02143222.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149]
 gi|161390879|gb|EDQ15219.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149]
          Length = 151

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 5   LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           +FY   +   E  L++LL      G RV V+         L+E LW    D FLPHG+  
Sbjct: 1   MFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPHGL-- 58

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
              G   + QP+LL+ +    N +T    VD A +   +V   ++V  + + +D  +L+ 
Sbjct: 59  -AGGAHDARQPILLSTTPDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDPQALDI 117

Query: 124 GRAHWRSLKNSGYA 137
            R  W +LK +G A
Sbjct: 118 ARGQWSTLKKAGAA 131


>gi|83945298|ref|ZP_00957647.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633]
 gi|83851468|gb|EAP89324.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633]
          Length = 149

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 8/122 (6%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58
           M  L FY  +N   +  L  LL    E+G R +V C  E  R D L+ +LWT++++ FLP
Sbjct: 1   MAELWFYHLENASVDEALPELLTKLMERGGR-AVVCSQEETRLDHLDSHLWTFREESFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG     + +    QP++L+  + N N++++ F +D A    GDV  +++VV +    D+
Sbjct: 60  HG---RADAEHVEHQPIVLSDRTDNPNSASMLFCLDGAD--PGDVSAWDRVVVMFEASDE 114

Query: 119 GS 120
            S
Sbjct: 115 TS 116


>gi|300022387|ref|YP_003754998.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524208|gb|ADJ22677.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 148

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 6   FYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-VDV 63
           FY  ++   E  L  LL+    +G R  VQ GSE   D+L+  LWT+  + FL HG   +
Sbjct: 5   FYHLEHQTLERVLPSLLEKTLARGWRAVVQAGSEERLDALDLALWTYDDESFLAHGTARI 64

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
           G     ++ QPV LT+   N N + +RF VD A       +  E+ V++ +  D  +L  
Sbjct: 65  GH----ANLQPVYLTLGHENPNGAGVRFFVDGAEA--DKFEGAERFVYVFDGHDPEALTS 118

Query: 124 GRAHW 128
            R  W
Sbjct: 119 ARGQW 123


>gi|144900065|emb|CAM76929.1| DNA polymerase III chi subunit, HolC [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 151

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  LL+   + G RV V  GS    + LN  LWT+ ++ +LPHG     E   ++ QP+ 
Sbjct: 18  LPKLLEKAVQAGLRVVVMAGSSERVEHLNAILWTFSEESWLPHGSASDGE---AALQPIW 74

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           LT    N NT+T+  L D A      +D +++ + + + +D+ ++   R  W++ K  G+
Sbjct: 75  LTEREENPNTATVLVLCDGA--RPTSLDGWDRCLDLFDGNDENAVLAARERWKTWKAEGH 132


>gi|83312772|ref|YP_423036.1| DNA polymerase III subunit chi [Magnetospirillum magneticum AMB-1]
 gi|82947613|dbj|BAE52477.1| DNA polymerase III, chi subunit [Magnetospirillum magneticum AMB-1]
          Length = 151

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL      G R  V  GS    ++LN+ LWT++ + +LPH
Sbjct: 1   MTQIGFYHLMRLPLEQALPKLLDKALAAGFRAVVLAGSPERVEALNDRLWTYEPESWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     E +    QP+ LT S  N N +TI  + D AS     V  Y++ + + + +D  
Sbjct: 61  GSARDGEPE---MQPIWLTHSDENPNGATILVMCDGASSE--KVGAYQRGLDLFDGNDPD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++E  R  W+  K+ G+
Sbjct: 116 AVEKARERWKRWKSEGH 132


>gi|310816135|ref|YP_003964099.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25]
 gi|308754870|gb|ADO42799.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25]
          Length = 152

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 6   FYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD 65
           F  F       L VLL    E+G RV ++        +L+  LW    DGFLPHG+    
Sbjct: 7   FQLFDGPVAATLPVLLNRSLERGWRVILRGTDPARMAALDVDLWRRDDDGFLPHGL---A 63

Query: 66  EGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGR 125
            G   + QPVLLT      +   +   VD A+    +    E+VV I +  D  +L+  R
Sbjct: 64  GGPHDALQPVLLTTGDGLPDGDCL-ICVDMATATPAECASLERVVLIFDGHDPQALDHAR 122

Query: 126 AHWRSLKNSG 135
             W++L   G
Sbjct: 123 GEWKALTGQG 132


>gi|83952303|ref|ZP_00961035.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM]
 gi|83837309|gb|EAP76606.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM]
          Length = 151

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L +LL      G RV V+       D L++ LW    + FLPH
Sbjct: 1   MGAAYFYHLTRQPLEATLPMLLTKAMGAGWRVVVRGVEPGRMDWLDQKLWQ-GGESFLPH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT +   AN       VD A +   +V   E+V  + + +D  
Sbjct: 60  GLA---GGAHDALQPVLLTTAMEAANDPQCLMAVDGAEVSAEEVQRLERVCVLFDGNDMA 116

Query: 120 SLEWGRAHWRSLKNSG 135
           +L+  R  W++L  +G
Sbjct: 117 ALDRARGQWKALTEAG 132


>gi|84684879|ref|ZP_01012779.1| DNA polymerase III subunit chi [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667214|gb|EAQ13684.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2654]
          Length = 149

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 5   LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
            ++  +   E  L VLL    E+G RV V+  SE     L+E LW    DGFLPHG+  G
Sbjct: 6   FYHMTRTPLEDTLPVLLGRAREQGWRVVVRGRSEARLRWLDEKLWM--GDGFLPHGISGG 63

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124
              D    QP+LLT  +  A+       +D A +   +V    +V+ + + +D G++E  
Sbjct: 64  PHDD---DQPILLTTGTATADCV---VSMDGAEVAPDEVGEAARVMILFDGNDDGAVERA 117

Query: 125 RAHWRSLKNS 134
           R  WR++  +
Sbjct: 118 REQWRTMTGA 127


>gi|288958789|ref|YP_003449130.1| DNA polymerase III subunit chi [Azospirillum sp. B510]
 gi|288911097|dbj|BAI72586.1| DNA polymerase III subunit chi [Azospirillum sp. B510]
          Length = 149

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 8/139 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  +L+   E+  R  V  GS    D LN++LWT+    FLPH
Sbjct: 1   MTEVRFYHLQRRTMEQALPKILEKVLERNWRAVVLAGSPERVDMLNQHLWTYDPGSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQ 118
           G        F+  QPV LT +  N N +T+   VD     + D +D Y  V  + + +D 
Sbjct: 61  G---AARDGFAERQPVWLTDADENPNGATVLVTVDGC---VSDRMDGYALVCDLFDGNDD 114

Query: 119 GSLEWGRAHWRSLKNSGYA 137
            ++   R  W++ K +G++
Sbjct: 115 EAVLAARQRWKACKAAGHS 133


>gi|83593535|ref|YP_427287.1| DNA polymerase III subunit chi [Rhodospirillum rubrum ATCC 11170]
 gi|83576449|gb|ABC23000.1| DNA polymerase III, chi subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 160

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKG-KRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY  +     + L  L     KG +R  V  GS    D LN  LWT+    +LPH
Sbjct: 1   MSRFDFYHLQRSTLEDALPRLLARVRKGDQRAVVMAGSPERVDGLNSLLWTFDAGSWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +GD +  QPV LTI   N N + +  L D   +   D   + +++ + +  D  
Sbjct: 61  G--TARDGDGAD-QPVWLTIDEENPNGAEVLVLTD--GVWPSDPARFARILLLFDGGDDS 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++   R HW++++ +G+
Sbjct: 116 AVARARGHWKAMRENGH 132


>gi|163746446|ref|ZP_02153804.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45]
 gi|161380331|gb|EDQ04742.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45]
          Length = 152

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 16  NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPV 75
            L +LL+     G RV+++        +L+  LWT+ +D FLPH +  GD     + QPV
Sbjct: 17  TLTMLLEKSLANGWRVALRGTDPEGLQALDRALWTFSEDSFLPHAIAGGDR---DADQPV 73

Query: 76  LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           LLT+     N +     V  A +   ++   ++V  + +  D  +L+  R  W+ LK+ G
Sbjct: 74  LLTLEDGAPNRADCLMAVHGAHVTAQEIAALQRVCVLFDGHDPMALDQARGLWKRLKSEG 133


>gi|259419117|ref|ZP_05743034.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B]
 gi|259345339|gb|EEW57193.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B]
          Length = 154

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   +  L VLL      G R++V+         L++ LW      FLPH
Sbjct: 1   MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLGGDATFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G     QP+LLT S+   N +T    VD A +   +V   E+V  + +  D  
Sbjct: 61  GLA---GGPHDKLQPILLTTSADAPNDATCVMSVDGAEVTPEEVSALERVCILFDGTDPD 117

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +++  R  W++L  +G A
Sbjct: 118 AVQQARGQWKALTAAGCA 135


>gi|114569779|ref|YP_756459.1| DNA polymerase III subunit chi [Maricaulis maris MCS10]
 gi|114340241|gb|ABI65521.1| DNA polymerase III, chi subunit [Maricaulis maris MCS10]
          Length = 150

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPV 75
           L  LL+    +G R  V+    + R+++++ LWTW++D FLPHG V+ G        QPV
Sbjct: 19  LPELLEKTLARGWRALVRSPDAKRREAIDQLLWTWREDSFLPHGQVEAGS----PERQPV 74

Query: 76  LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           L+     N N +   FL+D A         +++++ + +  D+ ++   RA W+     G
Sbjct: 75  LIAEDEANPNGAHCLFLLDGAEPE--KPSSFDRMIVMFDGQDEMAVTDARALWKKASAEG 132


>gi|83942396|ref|ZP_00954857.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36]
 gi|83846489|gb|EAP84365.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36]
          Length = 152

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 16  NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPV 75
            L +LL      G RV+V+   + + + L+  LW   +D FLPHG+     G   + QPV
Sbjct: 17  TLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDSFLPHGLA---GGPHDAEQPV 73

Query: 76  LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           LLT  +   N  +  F +  A++   +V   ++V  + +  D  +L   R  W+SLK +G
Sbjct: 74  LLTTDTHAPNNVSCVFSIHGAAVSAQEVAALDRVCILFDGLDDHALNVARDQWKSLKAAG 133


>gi|332558332|ref|ZP_08412654.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N]
 gi|332276044|gb|EGJ21359.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N]
          Length = 152

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLP 58
           M  ++FY   ++  E  L +LL     +G RV ++ G++RVR ++L+  LW   +DGFLP
Sbjct: 1   MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRVRLEALDLALWRVPEDGFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+   + G   + QPVLL   ++  N +    L+D A+    +    E+V  + +  D+
Sbjct: 60  HGM---EGGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDE 115

Query: 119 GSLEWGRAHWRSLKNSG 135
             L   R  W++L  +G
Sbjct: 116 AELGRARGQWKALTGAG 132


>gi|126739397|ref|ZP_01755090.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6]
 gi|126719497|gb|EBA16206.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6]
          Length = 152

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +      L+VLL+     G  ++V+         L++ LW    D FL H
Sbjct: 1   MGAAYFYHLTRKPMPETLMVLLEKARGAGWAIAVRGQDPDRMTWLDDALWLGSDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LLT ++  AN       VD A +   +V   E+V  + + +D  
Sbjct: 61  GLA---GGPHDALQPILLTATAQAANDPKCLMSVDGAGVEAEEVQALERVCILFDGNDMQ 117

Query: 120 SLEWGRAHWRSLKNSG 135
           +++  R  W++L  +G
Sbjct: 118 AVQRAREQWKALTGAG 133


>gi|23016368|ref|ZP_00056125.1| COG2927: DNA polymerase III, chi subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 151

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E  L  LL      G R  V  GS+   + LN  LWT++ D +LPHG     E +    Q
Sbjct: 15  EQALPKLLDKALAAGFRAVVLAGSQERVEDLNGRLWTYEPDSWLPHGSARDGEAE---MQ 71

Query: 74  PVLLTISSLNANTSTIRFLVD-EASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
           P+ LT +  N N +TI  + D  AS  +G    +++ + + + +D  ++E  R  W+  K
Sbjct: 72  PIWLTHTDENPNGATILVMCDGSASERVG---AFQRCLDLFDGNDAEAVEKARERWKRWK 128

Query: 133 NSGY 136
             G+
Sbjct: 129 AEGH 132


>gi|163739702|ref|ZP_02147110.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107]
 gi|161386932|gb|EDQ11293.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107]
          Length = 154

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58
           M    FY   +   E  L VLL      G R+ V+ G +  R + L+E LW   +D FLP
Sbjct: 1   MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVR-GVDLPRITRLDERLWLGAEDQFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+ VG  G   + QPVLL+  +     ++    VD A +   +V   E+V  + +  + 
Sbjct: 60  HGL-VG--GPHDALQPVLLSHETTPVPGTSCLMAVDGAEVTAEEVTALERVCILFDGTNP 116

Query: 119 GSLEWGRAHWRSLKNSG 135
            ++   R  W+SL ++G
Sbjct: 117 DAVARARVQWKSLTDAG 133


>gi|163743165|ref|ZP_02150547.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10]
 gi|161383582|gb|EDQ07969.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10]
          Length = 154

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-LNEYLWTWKKDGFLP 58
           M    FY   +   E  L VLL      G R+ V+ G +  R + L+E LW   +D FLP
Sbjct: 1   MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVR-GVDLPRITRLDERLWLGAEDQFLP 59

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+ VG  G   + QPVLL+  +     ++    VD A +   +V   E+V  + +  + 
Sbjct: 60  HGL-VG--GPHDALQPVLLSHETTPVPGTSCLMTVDGAEVTAEEVTALERVCILFDGTNP 116

Query: 119 GSLEWGRAHWRSLKNSGYA 137
            ++   R  W+SL ++G +
Sbjct: 117 DAVARARVQWKSLTDAGCS 135


>gi|146277170|ref|YP_001167329.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17025]
 gi|145555411|gb|ABP70024.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC
           17025]
          Length = 158

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 27  KGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
           +G RV ++ G++R R ++L+  LW   +DGFLPHG++ G +    + QPVLL   ++  N
Sbjct: 24  QGWRVMLR-GTDRGRLEALDLALWRVPEDGFLPHGMEGGPQ---DAAQPVLLGTGAIG-N 78

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
            +    L+D A     +    E+V  + +  D+G L   R  W++L  +G
Sbjct: 79  GAQALMLLDGAETDAAEAGPLERVWILFDGLDEGQLVHARGQWKALTGAG 128


>gi|254465585|ref|ZP_05078996.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium
           Y4I]
 gi|206686493|gb|EDZ46975.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium
           Y4I]
          Length = 152

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL      G R++V+         L++ LW   ++ F  H
Sbjct: 1   MGAAYFYHLTRRPLEETLPVLLDKARGAGWRIAVRGRDPERMAWLDDRLWQGPEESFPAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT     AN+      VD A++   +V    +V  + +  D  
Sbjct: 61  GLA---GGPHDALQPVLLTAGPEAANSPDCVMAVDGAAVTAEEVQALSRVCILFDGTDPE 117

Query: 120 SLEWGRAHWRSLKNSG 135
           +++  R  W+SL ++G
Sbjct: 118 AVQHARTQWKSLTDAG 133


>gi|126462310|ref|YP_001043424.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17029]
 gi|126103974|gb|ABN76652.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC
           17029]
          Length = 148

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 7/133 (5%)

Query: 5   LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLPHGVD 62
           +FY   ++  E  L +LL     +G RV ++ G++R R ++L+  LW   +DGFLPHG+ 
Sbjct: 1   MFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRARLEALDLALWRVPEDGFLPHGM- 58

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
             + G   + QPVLL I ++  N +    L+D A+    +    E+V  + +  D+  L 
Sbjct: 59  --EGGPHDAAQPVLLGIGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEVELA 115

Query: 123 WGRAHWRSLKNSG 135
             R  W++L  +G
Sbjct: 116 RARGQWKALTGAG 128


>gi|294678218|ref|YP_003578833.1| DNA polymerase III subunit chi [Rhodobacter capsulatus SB 1003]
 gi|294477038|gb|ADE86426.1| DNA polymerase III, chi subunit [Rhodobacter capsulatus SB 1003]
          Length = 150

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  L ++  ++  E  +  LL     +G RV ++  S    D L++ LW   ++ FLPHG
Sbjct: 1   MPALFYHVTQSPVEGVVETLLTRALAQGWRVELRGVSPERMDWLDQKLWLGPEEDFLPHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +     G   + QPVLLT S        +  L D A +   +V   E+V  + +  D+ +
Sbjct: 61  L---AGGPHDALQPVLLTTSPRPEGRQAVMTL-DGAEVTPAEVAAAERVWILFDGRDETA 116

Query: 121 LEWGRAHWRSLKNSGYA 137
           +   R  W++L  +G A
Sbjct: 117 VARARDQWKALTGAGTA 133


>gi|319944266|ref|ZP_08018542.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742561|gb|EFV94972.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 146

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L++  ++ G +V V C   R   S +  LW +    F+PH   V      +   PVLLT 
Sbjct: 20  LVRKAWQAGHKVVVYCEDTRRLASFDRLLWEFAPLSFIPH---VSVRHPLAERTPVLLTA 76

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
           S  +   S  + LV+           Y +VV ++ TD Q S +  RA +RS +  GY P
Sbjct: 77  SDADVPASHRQVLVNLGERMPPAFADYARVVELVGTDAQ-SRQAARARFRSYREQGYTP 134


>gi|221639313|ref|YP_002525575.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides KD131]
 gi|221160094|gb|ACM01074.1| DNA polymerase III chi subunit [Rhodobacter sphaeroides KD131]
          Length = 162

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVR-DSLNEYLWTWKKDGFLPHG 60
            ++FY   ++  E  L +LL     +G RV ++ G++R R ++L+  LW   ++GFLPHG
Sbjct: 13  VVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLR-GTDRARLEALDLALWRVPEEGFLPHG 71

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +   + G   + QPVLL   ++  N +    L+D A+    +    E+V  + +  D+  
Sbjct: 72  M---EGGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEAE 127

Query: 121 LEWGRAHWRSLKNSG 135
           L   R  W++L  +G
Sbjct: 128 LGRARGQWKALTGAG 142


>gi|189184262|ref|YP_001938047.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str.
           Ikeda]
 gi|189181033|dbj|BAG40813.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str.
           Ikeda]
          Length = 169

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 13/131 (9%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  LL+  Y            ++  +++N  LW++    F+PHG  +  E    S QP+ 
Sbjct: 19  LCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCSIDPEP---SSQPIY 75

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDY---------YEKVVFIINTDDQGSLEWGRAH 127
           +T +  N N + I  LV   S +  + DY         +E+++ I   +D   +++   +
Sbjct: 76  ITTNYENPNQAKILVLVI-LSYNCCNADYDNNISYFQQFERILIIFKENDNKLIDYMNNY 134

Query: 128 WRSLKNSGYAP 138
           +  LK  GY P
Sbjct: 135 YHRLKQDGYLP 145


>gi|182677642|ref|YP_001831788.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633525|gb|ACB94299.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 156

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 6   FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY   ++  E  L  LL+   E G R  VQ  SE     L+++LW +    FL HG    
Sbjct: 7   FYHLQRHPIERVLPKLLEKSLEHGWRAIVQARSEERLAVLDQWLWVYSDASFLAHGRAC- 65

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS----MHIGDVDYYEKVVFIINTDDQGS 120
            +GD +  QPV LT    N N + +R  ++ A     M       Y +++ + N  D+  
Sbjct: 66  -DGD-AVMQPVYLTTEMDNPNGARLRLFIEGADIVSLMQDPSSSLYARMIVLFNGHDEEE 123

Query: 121 LEWGRAHWRSLK 132
           L   R  W+ LK
Sbjct: 124 LTIARRQWQDLK 135


>gi|254486570|ref|ZP_05099775.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101]
 gi|214043439|gb|EEB84077.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101]
          Length = 153

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 16  NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLW-TWKKDGFLPHGVDVGDEGDFSSFQP 74
            L +LL      G RV+V+     V   ++  LW    +DGFLPHG+     G   + QP
Sbjct: 17  TLTMLLGKAQGAGWRVAVRGTDAAVLAQMDAALWRQGPEDGFLPHGMA---GGPHDAAQP 73

Query: 75  VLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134
           +LLT S+   N ++  F +  A +   +V   ++V  + + +D  +L   R  W++LK +
Sbjct: 74  ILLTTSADIPNGASCVFSIHGAEVSAAEVAALDRVCILFDGEDDIALNKARGQWKALKAA 133

Query: 135 G 135
           G
Sbjct: 134 G 134


>gi|296116650|ref|ZP_06835260.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976862|gb|EFG83630.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC
           23769]
          Length = 147

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   ++  E  L  LL    + G+R  V+CG +     L++ LW      +LPH
Sbjct: 1   MAEVGFYHLTRSTLEQALPALLGRTLDAGRRAVVRCGDDARVKWLDDALWRATDPLWLPH 60

Query: 60  GV-DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G   +G E    S+QP+ LT      N +T  FL+D  S        +E+V  + +  D+
Sbjct: 61  GTRALGHE----SWQPIWLTAGEDVPNGATFAFLIDGVS--CTQPGLFERVFDLFDGHDE 114

Query: 119 GSLEWGRAHWRSLKNSGY 136
            ++   R  W+  + +G+
Sbjct: 115 NAVAAARQRWKVCREAGH 132


>gi|117925960|ref|YP_866577.1| DNA polymerase III subunit chi [Magnetococcus sp. MC-1]
 gi|117609716|gb|ABK45171.1| DNA polymerase III, chi subunit [Magnetococcus sp. MC-1]
          Length = 157

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 6   FYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY+   D  E  LL +L   Y  G RV +     +    L+E+LW    D FLPH   V 
Sbjct: 13  FYQLATDSRERALLKILNKVYGMGLRVCIVVEDRQQAQGLDEHLWRHPPDSFLPHATSV- 71

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
               F   QP+L++   ++ N +T+  ++    + + ++D ++ VV  +  D Q 
Sbjct: 72  --DPFPEAQPILISEQPVDPNGATVVVML--TPVPLENLDQFDTVVDFVPDDPQA 122


>gi|74316597|ref|YP_314337.1| DNA polymerase III subunit chi [Thiobacillus denitrificans ATCC
           25259]
 gi|74056092|gb|AAZ96532.1| putative DNA polymerase III chi subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 143

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  ++FY F  D       +    Y +GK+V +      V  +++  LWT    GF+PH 
Sbjct: 1   MTEIIFYTFAEDRLDVARRVAAKAYGQGKQVMIYAPDAAVAGAVDRMLWTTPALGFVPHA 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIR---FLVDEASMHIGDVDYYEKVVFIINTDD 117
               D    ++  PVL     + A+   +R    +++  S        +E++V I+ TDD
Sbjct: 61  R---DSDALAAETPVL-----IGADAGALRHADVMINLDSAQPPAFGRFERLVEIVGTDD 112

Query: 118 QGSLEWGRAHWRSLKNSGYA 137
               E GRA +R  ++ GYA
Sbjct: 113 -AEREQGRARYRFYQSRGYA 131


>gi|255264162|ref|ZP_05343504.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62]
 gi|255106497|gb|EET49171.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62]
          Length = 152

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 23/145 (15%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDS-----LNEYLWTWKKD 54
           M    FY       E  L +L+      G RV V     R RD+     L+E LW     
Sbjct: 1   MGAAYFYHLTAAPLEQTLPMLIGKAQGAGWRVVV-----RGRDAARIVWLDEKLWAGDPT 55

Query: 55  GFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI----RFLVDEASMHIGDVDYYEKVV 110
            FLPHG+     GD  + QPVL     L A+T T+       VD A +  G+V   E+V 
Sbjct: 56  SFLPHGI---AGGDHDADQPVL-----LRADTQTVIDGCLMAVDGAEVTAGEVAACERVC 107

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135
            + +  D  +L   R  W++L ++G
Sbjct: 108 ILFDGLDGNALARAREQWKALTDAG 132


>gi|126736389|ref|ZP_01752131.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2]
 gi|126714210|gb|EBA11079.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2]
          Length = 164

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L +L+      G RV V+   E +   L++ LW   +DGF PH
Sbjct: 13  MGAVFFYHLTDSPLEATLPMLIGKARGAGWRVLVRGRDEALLRLLDDVLWQGPEDGFQPH 72

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LL    + ++       V  A +   +V+  E+   +    D  
Sbjct: 73  GM---AGGPHDADQPILL--GDVPSDGFGCVMSVAGADVTADEVNALERACILFAGHDDA 127

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +LE  R  W++L ++G A
Sbjct: 128 ALEHARGQWKTLTDAGCA 145


>gi|258541817|ref|YP_003187250.1| DNA polymerase III subunit chi [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632895|dbj|BAH98870.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635952|dbj|BAI01921.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639007|dbj|BAI04969.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642061|dbj|BAI08016.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645116|dbj|BAI11064.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648171|dbj|BAI14112.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651224|dbj|BAI17158.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654215|dbj|BAI20142.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 148

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  LL      G++ +V C S+ + D L++ LW      +LPHG +     D    QP+ 
Sbjct: 18  LPKLLARTLASGQKAAVWCASKPMLDDLDKALWKVTTPTWLPHGREGIACPD---LQPIW 74

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           L++     N +   FL++  S    D+  +E+V  + +  D+ ++   R  W + K +G+
Sbjct: 75  LSMGEDTPNNARFLFLLENRS--FPDLAAFERVFDLFDGHDEEAVAAARTRWSAAKAAGH 132


>gi|114798143|ref|YP_760967.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC
           15444]
 gi|114738317|gb|ABI76442.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 156

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 6   FYRF-KNDWEYNLLVLLQDEYEKGKRV-SVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           FY   ++  E     LLQ   E G RV +V   +ER+   L+  LWT+    FLPHG   
Sbjct: 10  FYHLSRSALEEAAAPLLQKCLEVGWRVLAVSPRAERLA-KLDAVLWTFDDASFLPHGQAD 68

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVD--EASMHIGDVDYYEKVVFIINTDDQGSL 121
               D +  QPVLL+    NAN++    L+D  EA + +     +++ + +    D G+ 
Sbjct: 69  APGLDVAR-QPVLLSAKLTNANSADALMLMDGVEAPVDVA----FKRCMVMFEDADTGTR 123

Query: 122 EWGRAHWRSLKNSG 135
              RA +++ K++G
Sbjct: 124 NKARAQFKAAKDAG 137


>gi|95929634|ref|ZP_01312376.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134331|gb|EAT15988.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans
           DSM 684]
          Length = 139

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 6   FYRFKNDWEYNLLVLLQDEY-EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           F +     +   L LL +E+  + KRV +    +    +L+ ++WTW K  FLPH   V 
Sbjct: 7   FIKLNKPEKAKCLCLLAEEFFAQSKRVLILVEDDNQALTLDRFMWTWNKGSFLPH---VW 63

Query: 65  DEGDFSSF-QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
           D G      + + +    LN+N +++  L+      +  +  ++ V+    T DQ  +E 
Sbjct: 64  DNGAVECHEEAIAIGTRELNSNGASV--LIAARPCSVEFMRQFKHVIEFAETYDQALVEA 121

Query: 124 GRAHWRSLKNSGYAP 138
            R  +R+ +  G  P
Sbjct: 122 ARGRFRAWRECGCEP 136


>gi|254460669|ref|ZP_05074085.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium
           HTCC2083]
 gi|206677258|gb|EDZ41745.1| DNA polymerase III chi subunit, HolC [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 153

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L +LL      G R  V   + +  D+L+  LW      FL H
Sbjct: 1   MGAVYFYHLTRKPLEATLPLLLSKARSAGWRCLVVGRNPQRLDALDTQLWQGAGTDFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G   G +    + QP+LL  +  + N +     +D A +    V  Y +   + + +++ 
Sbjct: 61  GRAGGVQ---DAAQPILLADTQTDINDAECAMCIDGADVTPDQVKTYARTCILFDGNNEQ 117

Query: 120 SLEWGRAHWRSLKNSGYA 137
            ++  R  W++L ++G A
Sbjct: 118 EVQTARIQWKTLTDAGCA 135


>gi|254294284|ref|YP_003060307.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814]
 gi|254042815|gb|ACT59610.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814]
          Length = 169

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 6   FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY   +   E  L  LL+   +K  RV +    +R+   L+  LWTWK D FLPH    G
Sbjct: 20  FYHLERTSLEEALGPLLEKCLQKDWRVLIVGDGDRL-PKLDLGLWTWKADSFLPHARLGG 78

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM--HIGDVDYYEKVVFIINTDDQGSLE 122
            +      QP+LL+ +   AN + I  L+D   +     D   Y + + + + DD  + +
Sbjct: 79  RDEIDPMAQPILLSNTPEPANKADIIVLLDGKRLPNEPDDATQYIRCMVVFDGDDFNARD 138

Query: 123 WGRAHWRSLKNSG 135
             R+ ++  K++G
Sbjct: 139 TARSQFKGAKDAG 151


>gi|289209276|ref|YP_003461342.1| DNA polymerase III subunit chi [Thioalkalivibrio sp. K90mix]
 gi|288944907|gb|ADC72606.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. K90mix]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G RV +  GS  +  +L+E+LWT++   FLPH  DV +         V +++   +A +
Sbjct: 31  QGHRVHIHTGSPELTRTLDEWLWTFEDTTFLPHSTDVRNTD-------VPVSLHEAHAPS 83

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
                L++ A+        +E+V  I+   ++   E GRA +R  K  GY 
Sbjct: 84  DRCDVLINLAADVPEYCGRFERVADIVG-GEESEREAGRARYRYFKERGYP 133


>gi|148284078|ref|YP_001248168.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str.
           Boryong]
 gi|146739517|emb|CAM79223.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str.
           Boryong]
          Length = 146

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 38  ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97
           ++  +++N  LW++    F+PHG     E    S QP+ +T +  N N + I  LV  +S
Sbjct: 18  KKTEEAINNTLWSFSSTSFIPHGCSTDPEP---SSQPIYITTNYENPNQAKILVLVILSS 74

Query: 98  --------MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
                    +I     +E+++ I   +D   +++   ++  LK  GY P
Sbjct: 75  NCCNANYDNNISYFQQFERILIIFKENDNKLIDYMNNYYHRLKQDGYLP 123


>gi|329114406|ref|ZP_08243168.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001]
 gi|326696482|gb|EGE48161.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001]
          Length = 148

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  LL      G++ +V C S+ + D L++ LW      +LPHG +     D    QP+ 
Sbjct: 18  LPKLLARTLASGQKAAVWCASKPMLDDLDKTLWKVTTPTWLPHGREGIACPD---LQPIW 74

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           L++     N +   FL++  S    D+  +E+V  + +  D+ ++   R  W + K +G+
Sbjct: 75  LSMGEDAPNAARFLFLLENRS--FPDLADFERVFDLFDGHDEEAVAAARTRWSAAKAAGH 132


>gi|114328867|ref|YP_746024.1| DNA polymerase III subunit chi [Granulibacter bethesdensis CGDNIH1]
 gi|114317041|gb|ABI63101.1| DNA polymerase III, chi subunit [Granulibacter bethesdensis
           CGDNIH1]
          Length = 149

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL      G+R  V CG      +L+  LW      +LPH
Sbjct: 1   MTEIGFYHLTRTGPEQALPQLLGRTLAAGERAMVLCGGPERVAALDTTLWLCPNPDWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNA-NTSTIRFLVD-EASMHIGDVDYYEKVVFIINTDD 117
           G      GD ++ QP+ LT     A N +   FL+D  AS  + D   Y +V  + +  +
Sbjct: 61  G--TARSGD-AALQPIWLTAQDEAAPNGAHFLFLIDGTASERLHD---YTRVFDLFDGSN 114

Query: 118 QGSLEWGRAHWRSLKNSGY 136
           + ++   R  W+  KN+G+
Sbjct: 115 EDAVAAARLRWKQAKNAGH 133


>gi|308050964|ref|YP_003914530.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
 gi|307633154|gb|ADN77456.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
          Length = 153

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLN 83
           Y KG+RV V C S+   ++L+E LW ++ D F+PH  V  G +G      PV +  +  N
Sbjct: 33  YRKGQRVFVHCASQADAEALDEQLWQFEPDSFIPHNLVGEGPQGG----APVEIGWAMPN 88

Query: 84  ANTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGR--AHWRSL 131
           A     R L+   +  +      +  ++  +  D+Q   +  +  AH+R L
Sbjct: 89  AALPVNRALLINLAPEVPKFAVQFAHIIDFVPADEQAKAQARKRFAHYRQL 139


>gi|124267130|ref|YP_001021134.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1]
 gi|124259905|gb|ABM94899.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1]
          Length = 144

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 1/136 (0%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D   +   LL   Y++G RV+V   S      L+  LWT+    F+PH 
Sbjct: 1   MTEINFHHGAADPLAHACRLLTKAYQRGARVAVTASSSERLAQLDVMLWTYDPLAFVPHA 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                        P  + +    A+      LV+         + +E++  I+  DD+  
Sbjct: 61  RLRAGAAPAERLAPTPIWLLDRAADAPHHEVLVNLGPEVPAGFESFERLFEIVGKDDE-E 119

Query: 121 LEWGRAHWRSLKNSGY 136
              GR  WR  ++ GY
Sbjct: 120 RRAGRQRWRYFESRGY 135


>gi|270159213|ref|ZP_06187869.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968]
 gi|289165962|ref|YP_003456100.1| DNA polymerase III, chi subunit [Legionella longbeachae NSW150]
 gi|269987552|gb|EEZ93807.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968]
 gi|288859135|emb|CBJ13064.1| putative DNA polymerase III, chi subunit [Legionella longbeachae
           NSW150]
          Length = 144

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 28/127 (22%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD-----------EGD 68
           LL+  Y KG +V V C +++  + L+E LWT+K+D F+PH +               E +
Sbjct: 26  LLEKAYVKGHKVYVLCANKQDAEFLDELLWTFKEDSFIPHHLQGEGPEPPPPIQIGYERE 85

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
              F  +LL +S+ N  +   +F                K +  I  + +   E  RAH+
Sbjct: 86  PRGFNDILLNLSN-NIPSFYSKF----------------KRIMEIVLNSEAEKEQSRAHY 128

Query: 129 RSLKNSG 135
           RS K +G
Sbjct: 129 RSYKANG 135


>gi|302341449|ref|YP_003805978.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM
           2075]
 gi|301638062|gb|ADK83384.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM
           2075]
          Length = 145

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG-DEGDFSSFQPVLLTISSLN 83
           + +G RV +     R    L+  LWT+    F+PH +  G D+ D    +PVL++    N
Sbjct: 27  WRQGARVLILAADPRQAAGLDALLWTFDPASFVPHALAGGADQAD----EPVLISQEPAN 82

Query: 84  ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
            N +++  +    +        +++V+ +I  +D   L   R  +R  ++ G  P
Sbjct: 83  LNHASVLIMTKPPASPQAVPPGFQRVIVLIPLEDGPDLHACRDCFRLARDQGLNP 137


>gi|288940946|ref|YP_003443186.1| DNA polymerase III subunit chi HolC [Allochromatium vinosum DSM
           180]
 gi|288896318|gb|ADC62154.1| DNA polymerase III chi subunit HolC [Allochromatium vinosum DSM
           180]
          Length = 143

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 66/138 (47%), Gaps = 10/138 (7%)

Query: 6   FYRFKNDWEYNLLVLLQDEYEKGK----RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY  + D   +  +L     E+ +    RV + C        L+  LWT +++ FLPHG+
Sbjct: 6   FYSLEPDSRGDRFILACRLVERIRAQDLRVLILCPDREEARHLDRLLWTMRQESFLPHGL 65

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
               + D +   P+L+++   + +   +  L++ +      ++ +E++  +++ +D    
Sbjct: 66  VGTVDTDLT---PILISLDGASEHGCPV--LLNLSRALPAGLERFERLCDLVD-NDPAVR 119

Query: 122 EWGRAHWRSLKNSGYAPD 139
           + GR  +R+ +  GY PD
Sbjct: 120 QAGRERFRAYRERGYEPD 137


>gi|163792840|ref|ZP_02186816.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199]
 gi|159181486|gb|EDP65998.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199]
          Length = 149

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E  L  LL+   + G+R  V  GS+    +LN  LWT++   +LPHG     +  F   Q
Sbjct: 15  ERALPKLLERTLDTGQRAVVLAGSDERVQALNGLLWTYEDRSWLPHG---SSKDGFDEDQ 71

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           P+ L+    N N +   FL D   + I D+  + +V  + +  D  ++   R  W++ ++
Sbjct: 72  PIWLSAVEGNPNGAAFLFLTD--GVTIDDLTAWSRVFDLFDGRDDAAVAAARTRWKAARD 129

Query: 134 SGYA 137
            G++
Sbjct: 130 GGHS 133


>gi|311694205|gb|ADP97078.1| DNA polymerase III chi subunit, HolC [marine bacterium HP15]
          Length = 170

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+   +++G RV V C + +  + L++ LW +  D F+PH V V D     S    +L  
Sbjct: 49  LVDKAWQQGDRVCVVCDTMQHAEELDDLLWNFSPDAFIPHSV-VPDSATTCSDPVGILLC 107

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
                +  T+  L   ++    D D ++++  + + +D   L   R+H++ L+  G  P
Sbjct: 108 PPAPEDWDTVIIL---SATLPADADRFKRLALVAH-NDPNVLNQARSHFKQLRALGIEP 162


>gi|92115037|ref|YP_574965.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens
           DSM 3043]
 gi|91798127|gb|ABE60266.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens
           DSM 3043]
          Length = 150

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 16/123 (13%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  + KG R+ +    E +   L+E LWT+K + +LPH V +GD  D S   PV L  
Sbjct: 24  LAETIHRKGYRLHIHTEDETMARELDERLWTFKPESYLPHAV-LGD--DVSPEPPVTLGW 80

Query: 80  SSLNANTSTIRFLVDEASMHIGD-----VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134
            +  A          EA +++          +E+V  IIN   Q  L   RA W++ K  
Sbjct: 81  EAPPAPGV-------EAMLNLHPEIPEWFSRFERVAEIIN-QHQDVLTAKRACWQTYKKR 132

Query: 135 GYA 137
           GY 
Sbjct: 133 GYP 135


>gi|148358633|ref|YP_001249840.1| DNA polymerase III subunit chi [Legionella pneumophila str. Corby]
 gi|148280406|gb|ABQ54494.1| DNA polymerase III, chi subunit [Legionella pneumophila str. Corby]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68
           L++  Y KG  + V C +++  + L+E LWT+K D F+PH            V +G + +
Sbjct: 26  LIEKAYSKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
              F  +LL +S+ N      RF                K V  + ++ +   E  R H+
Sbjct: 86  PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128

Query: 129 RSLKNSGYA 137
           +  +N G A
Sbjct: 129 KEYRNKGCA 137


>gi|54295471|ref|YP_127886.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens]
 gi|53755303|emb|CAH16797.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68
           L++  Y KG  + V C +++  + L+E LWT+K D F+PH            V +G + +
Sbjct: 26  LIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
              F  +LL +S+ N      RF                K V  + ++ +   E  R H+
Sbjct: 86  PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128

Query: 129 RSLKNSGYA 137
           +  +N G A
Sbjct: 129 KKYRNKGCA 137


>gi|307611509|emb|CBX01183.1| hypothetical protein LPW_28821 [Legionella pneumophila 130b]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68
           L++  Y KG  + V C +++  + L+E LWT+K D F+PH            V +G + +
Sbjct: 26  LIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
              F  +LL +S+ N      RF                K V  + ++ +   E  R H+
Sbjct: 86  PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128

Query: 129 RSLKNSGYA 137
           +  +N G A
Sbjct: 129 KEYRNKGCA 137


>gi|296108277|ref|YP_003619978.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650179|gb|ADG26026.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99
           Alcoy]
          Length = 144

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 28/129 (21%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68
           L++  Y KG  + V C +++  + L+E LWT+K D F+PH            V +G + +
Sbjct: 26  LIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
              F  +LL +S+ N      RF                K V  + ++ +   E  R H+
Sbjct: 86  PRGFTDILLNLST-NIPIFYTRF----------------KRVIELVSNVEHEKEVSRLHY 128

Query: 129 RSLKNSGYA 137
           +  +N G A
Sbjct: 129 KEYRNKGCA 137


>gi|126667527|ref|ZP_01738497.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17]
 gi|126627953|gb|EAZ98580.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17]
          Length = 174

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+   +++G RV + C +      L++ LW +  D F+PH   V  E +     PV + +
Sbjct: 55  LVNKAWQQGDRVGIVCDTLEHAQELDDLLWNFSPDAFIPHS--VISEANTPCKDPVGILL 112

Query: 80  SSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
               A    T+  L  E   H    D ++++  I   +D   L+  R+H++ L+  G
Sbjct: 113 HPPAAEDWDTVIILCTELPAH---ADQFKRLALIAQ-NDPVVLDQARSHFKQLRALG 165


>gi|77919148|ref|YP_356963.1| DNA polymerase III subunit chi [Pelobacter carbinolicus DSM 2380]
 gi|77545231|gb|ABA88793.1| DNA polymerase III, chi subunit [Pelobacter carbinolicus DSM
          2380]
          Length = 138

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QP 74
          +L  L +  + +G+RV V    +    +L+ ++WTWKK  F+PH   V D G      +P
Sbjct: 17 HLCELAEHFFTQGQRVLVMVCDDNQGVTLDRFMWTWKKGAFIPH---VYDNGAVDCLDEP 73

Query: 75 VLLTISSLNANTSTIRFLVDEASM 98
          V++ +   N N + +  +    S+
Sbjct: 74 VIIEVEERNPNNAGVLIMGKPCSL 97


>gi|225025636|ref|ZP_03714828.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC
           23834]
 gi|224941586|gb|EEG22795.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC
           23834]
          Length = 173

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 34/78 (43%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M T+ FY    D E     L +   E G RV   CG      +L+  LW ++ + FLPH 
Sbjct: 27  MPTVTFYTHVADLETFACRLAKRAVEAGCRVLAWCGGTEQLATLDRQLWAFEAESFLPHE 86

Query: 61  VDVGDEGDFSSFQPVLLT 78
           + +  E       P+LL 
Sbjct: 87  IWLPKENPCPIEPPILLA 104


>gi|149378266|ref|ZP_01895978.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893]
 gi|149357463|gb|EDM45973.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893]
          Length = 157

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+    ++  RV V C + +    L++ LW +  D F+PH + V D     +    +L  
Sbjct: 36  LVDKARQQRDRVGVVCDTMQQAQELDDLLWNFSPDAFIPHSI-VPDSATTCTDPVGILLC 94

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +  +  T+  L   ++    D D ++++  + + +D+  L   R+H++ L+  G  P 
Sbjct: 95  QPVAEDWDTVIIL---SATLPADADRFKRLALVAH-NDEAVLGQARSHFKQLRALGIEPR 150

Query: 140 V 140
           V
Sbjct: 151 V 151


>gi|162149088|ref|YP_001603549.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545169|ref|YP_002277398.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787665|emb|CAP57261.1| putative DNA polymerase III [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209532846|gb|ACI52783.1| DNA polymerase III chi subunit HolC [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 148

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL    + G+R  ++CG      +++E LW      +LPH
Sbjct: 1   MAEIGFYHLTRTPVEQALPALLGRTLDAGRRAVLRCGDAARVKAMDEALWQSADPVWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G   + QP+ LT      N +T  F +D   +   D   +E+V  + +  D  
Sbjct: 61  GSAAMGHG---ALQPIWLTDGPDVPNGATYLFAID--GVVCPDAGTFERVFDLFDGSDAD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++   R  W + + +G+
Sbjct: 116 AVAAARRRWVTCREAGH 132


>gi|52842838|ref|YP_096637.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52629949|gb|AAU28690.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 144

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68
          L++  Y KG  + V C +++  + L+E LWT+K D F+PH            V +G + +
Sbjct: 26 LIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85

Query: 69 FSSFQPVLLTISS 81
             F  +LL +S+
Sbjct: 86 PRGFTDILLNLST 98


>gi|113868944|ref|YP_727433.1| DNA polymerase III subunit chi [Ralstonia eutropha H16]
 gi|113527720|emb|CAJ94065.1| DNA polymerase III chi subunit [Ralstonia eutropha H16]
          Length = 144

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L++  Y  G++V +     ++ D L+  LWT+    FLPH    G E   ++  P+LL  
Sbjct: 20  LVRKAYGAGQKVVIHGAPAQLAD-LDARLWTFSALDFLPH---CGLESPNAAVTPILLAA 75

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           ++        + L++ A         +E+++ ++   D  + E GR  +R  +  GY
Sbjct: 76  TT--EGVPHHQLLINLADQAPAQFASFERLIEVVGAGD-AAREAGRQRYRFYRERGY 129


>gi|294084198|ref|YP_003550956.1| DNA polymerase III subunit chi [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663771|gb|ADE38872.1| DNA polymerase III, chi subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 150

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   + D E  LL+LL+     GK+  + C  +    +L+  LWT + D +  H
Sbjct: 1   MSKIDFYHLTQTDMETVLLMLLKKTLAAGKKALILC-PQPAASALDTDLWTREPDSWFAH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+D  D  D +     + T  ++N   +   FL+  +     ++  +E+V  + +   + 
Sbjct: 60  GLDDADGQDIAKIW--ISTDMAVNPIKAEFVFLLHGSVP--AEISQFERVFNLFDGRSEA 115

Query: 120 SLEWGRAHWRSLKNSG 135
            ++  R  W+S  + G
Sbjct: 116 QVQHARIQWKSWADLG 131


>gi|149186117|ref|ZP_01864431.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21]
 gi|148830148|gb|EDL48585.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21]
          Length = 146

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 9/127 (7%)

Query: 6   FYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY+  ND  +  +  L +   + G+R+ V    ER+R+ +++ LW      FL +G    
Sbjct: 5   FYQLSNDPVDVTVAKLARKVLQAGERLVVVAADERLREHISKTLWEQGGGSFLANGP--- 61

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124
            +G  ++ QP+L+  +    N + +  L D       D   +++ + + + +   + E  
Sbjct: 62  ADGPHAARQPILIAETCAAPNEARMAILAD--GQWREDASGFDRTMLLFDAE---ATEAA 116

Query: 125 RAHWRSL 131
           R  WR L
Sbjct: 117 RGLWREL 123


>gi|54298621|ref|YP_124990.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris]
 gi|53752406|emb|CAH13838.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGD 68
          L++  Y KG  + V C +++  + L+E LWT+K D F+PH            V +G + +
Sbjct: 26 LIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPHNLQGEGPEPPPPVQIGYQKE 85

Query: 69 FSSFQPVLLTISS 81
             F  +LL +S+
Sbjct: 86 PRGFTDILLNLST 98


>gi|194290550|ref|YP_002006457.1| DNA polymerase III subunit chi [Cupriavidus taiwanensis LMG 19424]
 gi|193224385|emb|CAQ70396.1| DNA POLYMERASE III, CHI SUBUNIT [Cupriavidus taiwanensis LMG 19424]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L++  Y  G++V +     ++ D L+  LWT+    FLPH    G E   ++  P+LL  
Sbjct: 20  LVRKAYGAGQKVVIHGAPAQLAD-LDARLWTFSALDFLPH---CGLESPNAAVTPILLAA 75

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           ++        + L++ A         +E+++ ++   D  + E GR  +R  +  GY
Sbjct: 76  TT--EGVPHHQLLINLAEEAPAQFASFERLIEVVGAGD-AAREAGRQRYRFYRERGY 129


>gi|94500492|ref|ZP_01307023.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65]
 gi|94427282|gb|EAT12261.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65]
          Length = 142

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +++G+++ V    E+    L++ +W +K + FLPH + VG++   +      + I
Sbjct: 24  LAEKAFKEGRQIYVHAQDEQQAKQLDDLMWEYKPESFLPHQI-VGEQASQTQ-----VEI 77

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
              +  +     L++  S        +++V+ I+   D+ SL   RAH++  ++ GY
Sbjct: 78  GWQDHPSHHFDVLINLVSPQPSFFSRFDRVLEIV-IQDETSLAQSRAHYKFYRDRGY 133


>gi|167585750|ref|ZP_02378138.1| DNA polymerase III chi subunit HolC [Burkholderia ubonensis Bu]
          Length = 138

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH-GVDVGDEGDFSSFQPVLLT 78
           LL+  Y+ G+ V V     R+R +L+E LWT+    F+PH G+D     D     P++L 
Sbjct: 20  LLRKAYQAGQPVVVLAEPARLR-ALDERLWTFSPLDFIPHCGIDSQHAAD----TPIVLA 74

Query: 79  ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
                A    +  L++  +        +E+++ ++  ++   L  GR  +R  ++ GYA
Sbjct: 75  ADLDKAPHHQV--LLNLGAAVPAQFARFERLLEVVG-NEPAELAAGRERYRFYRDRGYA 130


>gi|146283388|ref|YP_001173541.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501]
 gi|145571593|gb|ABP80699.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501]
 gi|327481781|gb|AEA85091.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri DSM 4166]
          Length = 139

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           ++ G +V V+C  E     L+E LW+++ + F+PH     ++       PV++ +     
Sbjct: 29  WQHGLQVFVRCSDEDQSTRLDELLWSFRAERFIPH-----EQYAEEVQAPVVIGLEQEPP 83

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
               +  L++ A      +D + +V+ I+N + Q  L   R ++R  +  GY P  +
Sbjct: 84  TAQGL--LINLAPTLSAHIDRFSRVIEIVNQEPQ-LLTACRENFRLYRRQGYDPQRV 137


>gi|120553892|ref|YP_958243.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8]
 gi|120323741|gb|ABM18056.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8]
          Length = 169

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+   +++G RV V C +E     L++ LW +  + F+PH +        S    +LL  
Sbjct: 48  LVDKAWQQGDRVCVLCDTEEQALELDDLLWNFTPEAFIPHSIAKAATTPCSDPVGILLYP 107

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
            +   +  T+  L   +S    D D Y ++  + + +D   L   R H++ L++ G
Sbjct: 108 PAA-VDWDTVIVL---SSALPEDADQYRRLALVAH-NDPAVLNQARGHYKQLRSLG 158


>gi|56552204|ref|YP_163043.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543778|gb|AAV89932.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 148

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 45  NEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV 103
           ++YLW ++   FLPHG V  GDE +     PVL++ +    N ++   L D   +   + 
Sbjct: 47  DDYLWRYEDTSFLPHGRVGGGDEAE----HPVLISTAMEAVNQASYIALTD--GLWRAEA 100

Query: 104 DYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
             +E+V +     D+ +++  R  WRSLKN
Sbjct: 101 LNFERVFYFF---DEIAVQQARQAWRSLKN 127


>gi|241761722|ref|ZP_04759809.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374030|gb|EER63563.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 148

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 45  NEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV 103
           ++YLW ++   FLPHG V  GDE +     PVL++ +    N ++   L D   +   + 
Sbjct: 47  DDYLWRYEDTSFLPHGRVGGGDEAE----HPVLISTAMEAVNQASYIALTD--GLWRAEA 100

Query: 104 DYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
             +E+V +     D+ +++  R  WRSLKN
Sbjct: 101 LNFERVFYFF---DEIAVQQARQAWRSLKN 127


>gi|260752287|ref|YP_003225180.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551650|gb|ACV74596.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 148

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 45  NEYLWTWKKDGFLPHG-VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV 103
           ++YLW ++   FLPHG V  GDE +     PVL++ +    N ++   L D   +   + 
Sbjct: 47  DDYLWRYEDTSFLPHGRVGGGDEAE----HPVLISTAMEAVNQASYIALTD--GLWRAEA 100

Query: 104 DYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
             +E+V +     D+ +++  R  WRSLKN
Sbjct: 101 LNFERVFYFF---DEIAVQQARQAWRSLKN 127


>gi|330504707|ref|YP_004381576.1| DNA polymerase III subunit chi [Pseudomonas mendocina NK-01]
 gi|328918993|gb|AEB59824.1| DNA polymerase III, chi subunit [Pseudomonas mendocina NK-01]
          Length = 139

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 8/114 (7%)

Query: 28  GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTS 87
           G  V V+   E     LNE LWT+K + F+PH  D+  +   S   PV+L I    A ++
Sbjct: 32  GLPVFVRGSDEAQCAELNELLWTFKAERFVPH--DLHQDAPLS---PVVLGID--EAPSA 84

Query: 88  TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
               L++  S     V+ + +++ I+N   +  L   R ++R+ +  GY P  +
Sbjct: 85  DQGVLINLGSSLSPHVERFSRIIEIVNQQPE-LLSACRENFRTYRQRGYDPQRV 137


>gi|114562095|ref|YP_749608.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina
           NCIMB 400]
 gi|114333388|gb|ABI70770.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina
           NCIMB 400]
          Length = 149

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L + +Y + K V + C  ++   +++E LW ++ + F+PH  ++  EG  +   PV +  
Sbjct: 29  LAEQQYRQQKTVYIHCKDKQQAYAIDELLWQFEPNAFVPH--NLKGEGPVTG-APVEIGF 85

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
            +L  N S    +     M    V+    + F+ N D+   +   R  +R  +N G  P
Sbjct: 86  DTLGPNKSRQVLINLADQMPSFAVNLPHIIDFVANDDELKRI--ARNRYRQYQNVGITP 142


>gi|254495992|ref|ZP_05108898.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12]
 gi|254354780|gb|EET13409.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12]
          Length = 118

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          ++  Y +G RV V C  ++  + L+E LWT+K+D F+PH +
Sbjct: 1  MEKAYARGHRVYVFCNHQQDAELLDELLWTFKEDSFIPHNL 41


>gi|296535102|ref|ZP_06897348.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957]
 gi|296264571|gb|EFH10950.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957]
          Length = 153

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL      G R  V+ G      SL+  LW  +   +LPH
Sbjct: 1   MSEIGFYHLTRTPLEAALPKLLGRVLSLGGRAVVKLGDAARLASLDASLWLCQDPDWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEA-SMHIGDVDYYEKVVFIINTDDQ 118
           G     +   +  QP+ LT+     N +   FL D A S  +GD   +E+V  + +  D+
Sbjct: 61  GSAASGQ---AELQPIWLTLQDEAPNGARYLFLADGAESAQLGD---FERVFDLFDGQDE 114


>gi|220935309|ref|YP_002514208.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996619|gb|ACL73221.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 147

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+   Y  G R+ V  GS  +   L++ LWT++   F+PH V+ G++ +     PV +  
Sbjct: 24  LIGKAYGLGHRIHVHTGSRALSMQLDDLLWTFRDVSFIPHQVE-GEDAEC----PVQICH 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                N   I  LV+  +        +E+V  I+N  D    + GR  +R  K+ GY
Sbjct: 79  DQEPQNAGDI--LVNLDTQVPLFFSRFERVAEIVNQ-DPAIRDAGRERYRFYKDRGY 132


>gi|88810476|ref|ZP_01125733.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231]
 gi|88792106|gb|EAR23216.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231]
          Length = 144

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  Y +G RV +  G + +  +L+  LWT++   F+PH   +G   D    +PV+L  
Sbjct: 27  LTEKAYRQGYRVFILTGDKALTQALDLQLWTFRAGSFVPHAT-LGQADD----EPVVLGE 81

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
                    +  L      H   +    ++V    T    SLE  R  +R  +N G  P
Sbjct: 82  QPPRLAVDLLINLAAHCPNHWQRLSRIAEIV----TQQPESLELARERFRCYRNDGAQP 136


>gi|331007481|ref|ZP_08330652.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989]
 gi|330418705|gb|EGG93200.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989]
          Length = 144

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
          L +     G+ V ++   E   DSL+EYLW++K + F+PH     D     + + V++
Sbjct: 24 LAEKALHTGRHVVIRVSDEAHADSLSEYLWSFKPEAFVPHCFSSSDPSSTGTTEKVVI 81


>gi|330993936|ref|ZP_08317866.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1]
 gi|329758882|gb|EGG75396.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1]
          Length = 148

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 29  KRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTST 88
           +R  ++C +      ++E LW      +LPHG      G    +QP+ LT      N +T
Sbjct: 30  RRAVIRCATAARAQEIDEGLWRATSPLWLPHGTQAMGHG---PWQPIWLTAGDDVPNGAT 86

Query: 89  IRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
             F++D   + + D+  +E+V  + +  D+
Sbjct: 87  FLFVLD--GVEVSDLSPFERVFEVFDGHDE 114


>gi|300113103|ref|YP_003759678.1| DNA polymerase III subunit HolC [Nitrosococcus watsonii C-113]
 gi|299539040|gb|ADJ27357.1| DNA polymerase III chi subunit HolC [Nitrosococcus watsonii C-113]
          Length = 143

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  Y  G ++ +Q  ++     ++E LWT+++  F+PH +   +E D S   PVL  I
Sbjct: 24  LTEKAYRLGHQIYIQTENQAQAQEMDELLWTFRQGSFVPHALINSEEADES---PVL--I 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                    +  L++  +        +++V  II  D+      GR  +R  ++ G
Sbjct: 79  GYEREPEGKLELLINLCAEVPAFFSRFQRVAEIIGQDE-NHRHAGRQRYRYYRDHG 133


>gi|325982820|ref|YP_004295222.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212]
 gi|325532339|gb|ADZ27060.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212]
          Length = 159

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  +LFY   N+       L     ++  RV +   + ++ D L++ LWT+    F+PH 
Sbjct: 14  MTQILFYSGSNNKLQTTCRLCAKAIQQHMRVLIYVPASKLLDQLDQLLWTFSSTSFIPH- 72

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            ++ D+    S  PV+L+   +  N+   +   + + S H+   D +++++ I  T  + 
Sbjct: 73  CNILDDAKLVSATPVILS-GQIQVNSPFDVLINLHDQSPHL--FDQFDRLIEIAGTSHED 129

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   R  +R  KN+GY
Sbjct: 130 KLA-ARERYRFYKNAGY 145


>gi|254514077|ref|ZP_05126138.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3]
 gi|219676320|gb|EED32685.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3]
          Length = 142

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
           L L +  +++G RV +   +E+    L+E LWT++   FLPH +      D +S Q  + 
Sbjct: 22  LRLTEKAHKRGHRVFINSENEQQARQLDELLWTFRPASFLPHALC----SDNASEQICIG 77

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
                  +   +  L       IG    +++V  ++N +    LE  R  WR  +  GYA
Sbjct: 78  WGQEPQGHDDLLINLQTRVPQFIG---RFQRVAELVNQEP-ARLEALRDSWRHYRERGYA 133


>gi|157826359|ref|YP_001494079.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford]
 gi|157800317|gb|ABV75571.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford]
          Length = 154

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 8/82 (9%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVD----EA 96
           ++ LN++LWT+ +  F+PHG  +  + +    QP+ +T    N N +++  ++     E 
Sbjct: 42  QEMLNKHLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLIIISPTAIEK 98

Query: 97  SMHIGD-VDYYEKVVFIINTDD 117
            + I D V+ +++++ I ++ +
Sbjct: 99  ILQIKDYVEVFKRIIIITDSPE 120


>gi|304321942|ref|YP_003855585.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503]
 gi|303300844|gb|ADM10443.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503]
          Length = 145

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L VLL+    +  R  V+   E      ++ LWT+  D FLPH
Sbjct: 1   MTEILFYHCERARPEAVLPVLLERSLARDWRAVVRLPDEAAVRYWDDALWTYADDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRF-LVDEASMHIGDVDYYEKVVFIINTD 116
           G      G  ++ QP+ LT          I F LV E     G  +  E++V + + D
Sbjct: 61  GA-----GPPAADQPIWLTADETLPPGRQILFSLVAEGVEKGG--EGLERIVLLFDED 111


>gi|71891826|ref|YP_277555.1| DNA polymerase III, chi subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795932|gb|AAZ40683.1| DNA polymerase III, chi subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 150

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+  ++  GK + V C +E     +++ LWT+ ++ F+PH +     G      P+++  
Sbjct: 29  LISTQWRSGKTILVTCENEHQATKIDKILWTFDQNSFVPHNLF----GKTIQHAPIVIYW 84

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139
           S    +      L++    ++     + +++  +   D    +W R  +RS K +G+   
Sbjct: 85  SQCCYDNQPKDLLINLMLKNMNFFLNFNEIIDFVPISDILK-KWARYRYRSYKRNGFQVS 143

Query: 140 VI 141
           V+
Sbjct: 144 VV 145


>gi|260221419|emb|CBA29963.1| hypothetical protein Csp_A14780 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 144

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           LL+    +G R++V     +V+  L+  LW      FL H VD G      +  PV+LT 
Sbjct: 20  LLRKAVARGARLTVLAPPAQVQ-YLDASLWATSPTDFLVHAVDDGQAP--HAMCPVVLT- 75

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           S ++        LV+  +    D   +E+V+ +++ DD       R  WR     GY
Sbjct: 76  SRVHGALKNHSVLVNLTTAVPADFVQFERVIEVVSVDDDDR-ALARNRWRHYVLQGY 131


>gi|119476405|ref|ZP_01616756.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2143]
 gi|119450269|gb|EAW31504.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2143]
          Length = 145

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  ++ G  + +         +L+E LW+W+   F+PH +D     +    QP+ +  
Sbjct: 24  LAEKAFKLGNEIYIHGSDGDQAKALDELLWSWRNTSFIPHKIDDNSTDE----QPLHIGF 79

Query: 80  SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
                 +     L+   S H+ +    +E+V  I+   D    E  RA++R  KN GY  
Sbjct: 80  GKDKQMSGDHNGLLINLSDHVPEFFSRFERVSEIV-VQDSAVTESTRANYRFYKNRGYHL 138

Query: 139 DV 140
           D 
Sbjct: 139 DT 140


>gi|119503289|ref|ZP_01625373.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2080]
 gi|119460935|gb|EAW42026.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2080]
          Length = 139

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+   + +G  + +    E   ++L++ LWT++   F+PH +        SS  PV+L  
Sbjct: 24  LVDKAHRQGHTLFIHTTDEAEAEALDDLLWTFRPGSFIPHQL-----ASDSSEGPVVLGW 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
               +  + +  L++ A         +++V  ++ T D  SLE  R+ WR  K+ GY
Sbjct: 79  GQEPSGHNDV--LINLALSQPAFFSRFQRVAEVV-TQDATSLEAMRSAWRFYKDRGY 132


>gi|226943295|ref|YP_002798368.1| DNA polymerase III subunit chi [Azotobacter vinelandii DJ]
 gi|226718222|gb|ACO77393.1| DNA polymerase III chi subunit, HolC [Azotobacter vinelandii DJ]
          Length = 142

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          L +  +  G+R+ + C     R++L+  LW++K + FLPHG+
Sbjct: 24 LTEKAWRLGRRIYLHCQDAPQRETLDARLWSFKSEAFLPHGL 65


>gi|114777970|ref|ZP_01452884.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1]
 gi|114551757|gb|EAU54309.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1]
          Length = 146

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 33  VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFL 92
           V C        L+E LWT   + FL H V  G++   ++ QP+LL  S +  N   +  L
Sbjct: 37  VLCPDPGFAAQLDERLWTIHPESFLAHAV-AGNDTAQNARQPILLATSIIRDNNPAV--L 93

Query: 93  VDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
           ++       D+  +  +V  ++  D+G  +  R  +R+    G  P
Sbjct: 94  INGGLEVPPDISGFAHLVDFVDGWDEGLKQAARERFRTYSQMGLDP 139


>gi|297621270|ref|YP_003709407.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU
          86-1044]
 gi|297376571|gb|ADI38401.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU
          86-1044]
          Length = 142

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
          K KRV +   SE     L+++LW   K+GFLPH V      D      +++T    N N 
Sbjct: 33 KKKRVLITVPSETAATYLDDFLWKQPKEGFLPHSVSTQACSD-----EIVITTKQENLNQ 87

Query: 87 STI 89
          + I
Sbjct: 88 AEI 90


>gi|300725028|ref|YP_003714354.1| DNA polymerase III subunit chi [Xenorhabdus nematophila ATCC 19061]
 gi|297631571|emb|CBJ92280.1| DNA polymerase III, chi subunit [Xenorhabdus nematophila ATCC
           19061]
          Length = 159

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E+    L  D++  GKRV + C S++  + L+E LW  +   F+PH +  G+   + +  
Sbjct: 32  EWMACQLAADQWRAGKRVLIACESQQQAEKLDEALWQREPSQFVPHNL-AGEGPRYGA-- 88

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGD--VDYYEKVVFIINTDDQGSLEWGRAHWRSL 131
           PV L      +N    R ++     H  D    ++E + F+    D+   +  R  ++S 
Sbjct: 89  PVELCWPQKRSNAP--RDVLVTLLPHFADFATAFHEVIDFV--PIDENLKQLARERYKSY 144

Query: 132 KNSGY 136
           ++ G+
Sbjct: 145 RSVGF 149


>gi|89900901|ref|YP_523372.1| DNA polymerase III subunit chi [Rhodoferax ferrireducens T118]
 gi|89345638|gb|ABD69841.1| DNA polymerase III chi subunit, HolC [Rhodoferax ferrireducens
           T118]
          Length = 144

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           LL+     G ++ V  GS  V   L+  LWT+    F+PH   +  E    +  PV+L+ 
Sbjct: 20  LLRKAAASGAKLVV-IGSPDVLQQLDRALWTFSAVDFVPHCF-LESESHVVAASPVILST 77

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           S+       +  L++   +     + +E+V+ ++  +D+   +  R+ W+S  + GY
Sbjct: 78  STHAVPHQQV--LLNLGQLVPEGFERFERVIEVVGQEDEDR-QSARSRWKSYADRGY 131


>gi|120611820|ref|YP_971498.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1]
 gi|120590284|gb|ABM33724.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1]
          Length = 144

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 33  VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFL 92
           V  G   V D+++  LW      F+ H     DE D     PVLL      A  + +  L
Sbjct: 32  VITGPSAVLDAVDRALWALGPQDFVAH-CRQEDEADLREASPVLLATDPRAATHAQV--L 88

Query: 93  VDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           ++         + + ++V ++++ D+      R  WR     GYA
Sbjct: 89  LNLGPTVPAGFERFGRLVEVVSSTDESDRAGARERWRHYAQRGYA 133


>gi|88703590|ref|ZP_01101306.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis
           KT71]
 gi|88702304|gb|EAQ99407.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis
           KT71]
          Length = 142

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF----Q 73
           L L +  +++G RV +   +E     L+E LWT++   FLPH +   D  +        +
Sbjct: 22  LRLTEKAHKQGHRVFINSENEAQARELDELLWTFRPASFLPHALCSDDSSEQICIGWGQE 81

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           P       +N   S   F           +  +++V  ++N  +   LE  R  WR  + 
Sbjct: 82  PAGHDDLLINLQLSVPDF-----------IGRFQRVAELVN-QEPARLEALRHSWRHYRE 129

Query: 134 SGYA 137
            GYA
Sbjct: 130 RGYA 133


>gi|103487245|ref|YP_616806.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis
           RB2256]
 gi|98977322|gb|ABF53473.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis
           RB2256]
          Length = 149

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 1   MRTLLFYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FYR   D  E  L  L       G R+ V   +   R  ++  LWT     FLPH
Sbjct: 1   MPRVDFYRLTRDPVERVLPALAARVLGNGDRLLVVAAAAMQRQDIDAALWTANPASFLPH 60

Query: 60  G-VDVGDEGDFSSFQPVLL--TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           G     DE    + +P+LL  T+ +   N ++   L D       D   +++  F+    
Sbjct: 61  GHAGTPDE----AIEPILLSGTLDTSPPNGASRLALADGEWRE--DALAFDRTFFLF--- 111

Query: 117 DQGSLEWGRAHWRSL 131
           D   ++  RA WR+L
Sbjct: 112 DNSRIDDARATWRAL 126


>gi|261855976|ref|YP_003263259.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus
           c2]
 gi|261836445|gb|ACX96212.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus
           c2]
          Length = 147

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 31  VSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           V V C +    +S ++YLW +K D F+PH  D  D     +  P+ L +         + 
Sbjct: 35  VYVVCANLAHVESFDDYLWGYKPDAFVPHTADPED----IAHAPIFLGVDVAAGGFDYVI 90

Query: 91  FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
            L  +    + D    +++V      +  + E  RA WR  + +G  P
Sbjct: 91  NLSGKPIERVADRIQLDELV----DANPANREAARARWRDYQAAGVKP 134


>gi|91206236|ref|YP_538591.1| DNA polymerase III subunit chi [Rickettsia bellii RML369-C]
 gi|157827852|ref|YP_001496916.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389]
 gi|91069780|gb|ABE05502.1| DNA polymerase III chi subunit HolC [Rickettsia bellii RML369-C]
 gi|157803156|gb|ABV79879.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389]
          Length = 153

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
          Y   K V +   +E+ ++ LN+ LWT+ +  F+PHG  V  + +    QP+ +T +  N 
Sbjct: 27 YSDLKSVVLTVDTEQ-QEMLNKNLWTYSRKQFIPHGSKVDPQPE---KQPIYITDTLQNP 82

Query: 85 NTSTIRFLVDEASMH 99
          N +++  ++   ++ 
Sbjct: 83 NNASVLIIISPTNIE 97


>gi|255020896|ref|ZP_05292952.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254969687|gb|EET27193.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 16/111 (14%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           +V++ C  E + +S+++ LWT++   F PHG D          +PV L   +   + S +
Sbjct: 36  QVNILCRDEELAESMDDLLWTYQAGAFTPHGRD--------PQEPVCLYAGT---DASVL 84

Query: 90  RFLVDEASMHI----GDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           R     A + +    G++    +++  I  D+ G  +  R  +R L+ +GY
Sbjct: 85  RPAPALALVGLRELPGNLPDAARLLDFIPPDESGVAD-ARQRYRILREAGY 134


>gi|292493014|ref|YP_003528453.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4]
 gi|291581609|gb|ADE16066.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  Y  G R+ +Q   +     +++ LWT+++  F+PH +   +E   +S  PVL+  
Sbjct: 24  LTEKAYRLGHRIYIQVEDQEQAQKMDDLLWTFRQGSFVPHALMNTEE---ASETPVLIGY 80

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                  S +  L++  +       ++ +V  II+ D+  +   GR  +R  ++ G
Sbjct: 81  G--GEPESEMDLLINLCAEVPRFFSHFPRVAEIIDQDE-NNRHAGRQRYRDYRDQG 133


>gi|167032000|ref|YP_001667231.1| DNA polymerase III subunit chi [Pseudomonas putida GB-1]
 gi|166858488|gb|ABY96895.1| DNA-directed DNA polymerase [Pseudomonas putida GB-1]
          Length = 142

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G RV + C     R  L++ LW +K + F+PH        D +         
Sbjct: 24  LCEKAWRLGHRVYLHCQDTEQRSELDQRLWRFKGEAFVPH--------DLAEVHADADVA 75

Query: 80  SSLNANTSTIR-FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
             L  N    R  L++  +   G V  +E+V  I+  ++ G  +  R  +R  +  GYA
Sbjct: 76  LGLADNAGEHRDLLINLGASVPGFVGQFERVAEIV-VEEPGIRQSARERFRFYREQGYA 133


>gi|85710394|ref|ZP_01041458.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1]
 gi|85687572|gb|EAQ27577.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1]
          Length = 138

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 19/123 (15%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           + ++ Q   + G+R+ V   + + R++++  LW  + + FL +G       D    QP+L
Sbjct: 17  VALIAQRVLDSGERLLVVSKNSQQREAISRTLWKAEPESFLANGEASAAGAD---RQPIL 73

Query: 77  LTISSLNANTSTIRFLVDEASMHI--GDVDYYEKVVF---IINTDDQGSLEWGRAHWRSL 131
           L+ S   AN          A+ H+   D +Y E   F    +  DD+ ++E  R  W+SL
Sbjct: 74  LSASCEAAN----------AASHVIFADGEYREPTGFERAFLLFDDE-TVEAARGTWKSL 122

Query: 132 KNS 134
           ++S
Sbjct: 123 ESS 125


>gi|116748664|ref|YP_845351.1| DNA polymerase III subunit chi [Syntrophobacter fumaroxidans MPOB]
 gi|116697728|gb|ABK16916.1| DNA polymerase III chi subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 152

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 4   LLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           +LF       +  LL  +++  YE G++V V   S      +++ LWT+    F+PH   
Sbjct: 6   ILFVETVAAEQRKLLCNIVEHFYEAGRKVQVVADSTLGAQHIDQMLWTFSDRSFVPH--R 63

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
           + D G  +  +PV++T+     +      +V +A   +  +  +E  V  +  DD     
Sbjct: 64  ILDPGRGTPLEPVVITVGERILDGFDT--VVCDAECRLDFMTAFETAVHFVIRDDVDRRL 121

Query: 123 WGRAHWRSLKNSGYA 137
             R  W   ++   A
Sbjct: 122 QSRRMWTEARDRALA 136


>gi|152980235|ref|YP_001352359.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille]
 gi|151280312|gb|ABR88722.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille]
          Length = 141

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 23/131 (17%)

Query: 8   RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG 67
           R   +  + +++L QD  +  +              L+E LWT+ +  FLPH   V  + 
Sbjct: 22  RKARNANFQIVILAQDRAQLAQ--------------LDEKLWTFSEQDFLPH---VMLDD 64

Query: 68  DFSSFQPVLLTISSL--NANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGR 125
             ++  P+LLT  S   + +T  +  L D +  H      +E++  +I+T+D      GR
Sbjct: 65  ALAAQTPILLTADSAMESPHTQILINLSDTSPTHFA---RFERMFEVISTED-ADKSAGR 120

Query: 126 AHWRSLKNSGY 136
             +   K  GY
Sbjct: 121 DRYSFYKQRGY 131


>gi|152989277|ref|YP_001346666.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PA7]
 gi|218889884|ref|YP_002438748.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa LESB58]
 gi|150964435|gb|ABR86460.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa PA7]
 gi|218770107|emb|CAW25869.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa LESB58]
          Length = 142

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  + +G RV + C  E  R  L+  LW+++ + F+PH +   D     +  PV L +
Sbjct: 24  LAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                N   +  L++      G V  + +V  ++  ++    +  R  +R  +  GY
Sbjct: 79  GEPPGNHRDL--LINLTLEAPGFVPNFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132


>gi|91794217|ref|YP_563868.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans
           OS217]
 gi|91716219|gb|ABE56145.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans
           OS217]
          Length = 153

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  Y + + + + C  ++   +++E LW ++   F+PH  ++  EG  +   PV +  
Sbjct: 33  LAERAYRQQQEIYIHCQDKQQAYAIDELLWQFEPTAFVPH--NLKGEGPMTG-APVEIGF 89

Query: 80  SSLNANTSTIRFLVDEA-SMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
             L  N S  + L++ A  M    V+    + F+ N D+   +   R+ +R  +++G  P
Sbjct: 90  DKLGPNKSR-QLLINLADQMPAFAVNLPHIIDFVANDDELKRI--ARSRYRQYQSTGINP 146


>gi|319427209|gb|ADV55283.1| DNA polymerase III chi subunit HolC [Shewanella putrefaciens 200]
          Length = 170

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L Q  Y K + V + C  + +   ++E LW ++   F+PH  ++  EG  +   PV +  
Sbjct: 44  LAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPH--NLKGEGPITG-APVEIGF 100

Query: 80  SSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
             L AN S  + L++ A       V++ + + F+ N D   ++   R  +R  ++ G
Sbjct: 101 DRLGANKSR-QLLINIADQAPPFAVNFGQIIDFVANDDQHKAV--ARERYRQYRDLG 154


>gi|161617771|ref|YP_001591736.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|161367135|gb|ABX70903.1| hypothetical protein SPAB_05634 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 174

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 28 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 87

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 88 AESFVPHNL 96


>gi|290473521|ref|YP_003466391.1| DNA polymerase III subunit chi [Xenorhabdus bovienii SS-2004]
 gi|289172824|emb|CBJ79595.1| DNA polymerase III, chi subunit [Xenorhabdus bovienii SS-2004]
          Length = 154

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          L  D++  GKRV + C S++  + L+E LW  +   F+PH +
Sbjct: 33 LAADQWRAGKRVLIACESQQQAEKLDEALWQREPSQFVPHNL 74


>gi|94497697|ref|ZP_01304265.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58]
 gi|94422914|gb|EAT07947.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58]
          Length = 145

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 6   FYRFKNDWEYNLLVLLQDE-YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           FY+   D    +L  +       G R+ V  G     D +++ LW    + FL HG   G
Sbjct: 5   FYQLSRDPVEQVLPAIAGRILAMGARLLVVAGEGDRLDRISQGLWAGPPESFLAHG-RTG 63

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124
           + G+  ++QP+LL+ +    N +    L D   +   +   +++  +  + D   +++  
Sbjct: 64  EGGE--AYQPILLSDTCTAGNGARHIALAD--GLWREEALGFDRAFYFFDAD---TIDGA 116

Query: 125 RAHWRSL-KNSGYAP 138
           RA WR+L K  G  P
Sbjct: 117 RASWRTLSKAEGVEP 131


>gi|120598094|ref|YP_962668.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1]
 gi|146293835|ref|YP_001184259.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens
           CN-32]
 gi|120558187|gb|ABM24114.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1]
 gi|145565525|gb|ABP76460.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens
           CN-32]
          Length = 176

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L Q  Y K + V + C  + +   ++E LW ++   F+PH  ++  EG  +   PV +  
Sbjct: 50  LAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPH--NLKGEGPITG-APVEIGF 106

Query: 80  SSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
             L AN S  + L++ A       V++ + + F+ N D   ++   R  +R  ++ G
Sbjct: 107 DRLGANKSR-QLLINIADQAPPFAVNFGQIIDFVANDDQHKAV--ARERYRQYRDLG 160


>gi|194472838|ref|ZP_03078822.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|205358606|ref|ZP_02657873.2| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|194459202|gb|EDX48041.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|205332907|gb|EDZ19671.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C +E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACENEKQAFRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|213025672|ref|ZP_03340119.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 103

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 11 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 70

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 71 AESFVPHNL 79


>gi|16763277|ref|NP_458894.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|29144756|ref|NP_808098.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56416248|ref|YP_153323.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197262429|ref|ZP_03162503.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197365171|ref|YP_002144808.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|198245468|ref|YP_002218340.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|25355624|pir||AD1061 DNA polymerase III, chi chain [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16505585|emb|CAD06937.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Typhi]
 gi|29140395|gb|AAO71958.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56130505|gb|AAV80011.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096648|emb|CAR62263.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|197240684|gb|EDY23304.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197939984|gb|ACH77317.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|326626148|gb|EGE32493.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|205360565|ref|ZP_02684454.2| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|205348910|gb|EDZ35541.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|116051860|ref|YP_789297.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313109251|ref|ZP_07795219.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa
           39016]
 gi|115587081|gb|ABJ13096.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881721|gb|EFQ40315.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa
           39016]
          Length = 142

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  + +G RV + C  E  R  L+  LW+++ + F+PH +   D     +  PV L +
Sbjct: 24  LAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                N   +  L++      G V  + +V  ++  ++    +  R  +R  +  GY
Sbjct: 79  GETPGNHRDL--LINLTLEAPGFVANFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132


>gi|194735547|ref|YP_002117397.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197300603|ref|ZP_02659664.2| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|200387328|ref|ZP_03213940.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204927029|ref|ZP_03218231.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|224586300|ref|YP_002640099.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|194711049|gb|ACF90270.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197291664|gb|EDY31014.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|199604426|gb|EDZ02971.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204323694|gb|EDZ08889.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|224470828|gb|ACN48658.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|320088908|emb|CBY98666.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|16423041|gb|AAL23295.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|261249564|emb|CBG27431.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. D23580]
 gi|323132813|gb|ADX20243.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|332991285|gb|AEF10268.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|254251667|ref|ZP_04944985.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124894276|gb|EAY68156.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 138

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           LL+  Y+ G+ V V     R+R +L+E LWT+    F+PH    G +   ++  P++LT 
Sbjct: 20  LLRKAYQAGQPVVVVAEPARLR-ALDERLWTFSPLDFIPH---CGVDSAHAASTPIVLT- 74

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           + L+  +   R L++  +        +E+++ ++  +D   L  GR  +R  ++ GYA
Sbjct: 75  ADLD-KSPHHRVLLNLGAAVPAQFARFERLLEVVG-NDPDELAAGRDRYRFYRDRGYA 130


>gi|39546402|ref|NP_463336.2| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|62182902|ref|YP_219319.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|167551268|ref|ZP_02345023.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167991265|ref|ZP_02572364.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168244035|ref|ZP_02668967.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168464642|ref|ZP_02698545.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168821099|ref|ZP_02833099.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194445428|ref|YP_002043716.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194449358|ref|YP_002048500.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|197247365|ref|YP_002149396.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|207859602|ref|YP_002246253.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|213161211|ref|ZP_03346921.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|213419117|ref|ZP_03352183.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
 gi|213427637|ref|ZP_03360387.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. E02-1180]
 gi|213586776|ref|ZP_03368602.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213650370|ref|ZP_03380423.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213857513|ref|ZP_03384484.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|238910632|ref|ZP_04654469.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|289824524|ref|ZP_06544083.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|62130535|gb|AAX68238.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|194404091|gb|ACF64313.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194407662|gb|ACF67881.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|195632900|gb|EDX51354.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197211068|gb|ACH48465.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|205323926|gb|EDZ11765.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205330399|gb|EDZ17163.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337015|gb|EDZ23779.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205342292|gb|EDZ29056.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|206711405|emb|CAR35784.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|267996820|gb|ACY91705.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301160960|emb|CBW20494.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|312915573|dbj|BAJ39547.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|321222553|gb|EFX47625.1| DNA polymerase III chi subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322615640|gb|EFY12560.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322618700|gb|EFY15589.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322621887|gb|EFY18737.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322627612|gb|EFY24403.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322630918|gb|EFY27682.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322637863|gb|EFY34564.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322642321|gb|EFY38927.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322643904|gb|EFY40452.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651020|gb|EFY47405.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322656727|gb|EFY53015.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659849|gb|EFY56092.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322661940|gb|EFY58156.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322666312|gb|EFY62490.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672731|gb|EFY68842.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322676161|gb|EFY72232.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322680645|gb|EFY76683.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322684461|gb|EFY80465.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|322717405|gb|EFZ08976.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323194202|gb|EFZ79399.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323197347|gb|EFZ82487.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323201535|gb|EFZ86599.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323206049|gb|EFZ91011.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323213060|gb|EFZ97862.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323215431|gb|EGA00175.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323219415|gb|EGA03900.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323227719|gb|EGA11873.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323228889|gb|EGA13018.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323236499|gb|EGA20575.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240000|gb|EGA24047.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323241953|gb|EGA25982.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323247898|gb|EGA31835.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323251464|gb|EGA35335.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323258170|gb|EGA41847.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323263684|gb|EGA47205.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323265720|gb|EGA49216.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323270164|gb|EGA53612.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
          Length = 147

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|332991783|gb|AEF01838.1| DNA polymerase III chi subunit [Alteromonas sp. SN2]
          Length = 141

 Score = 37.4 bits (85), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/116 (18%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+ D +   +++SV C +++  + ++E+LW    + F+PH  ++  EG  S      + I
Sbjct: 23  LIADAFANKQKISVLCDTQKQAEEVDEFLWQLPANRFVPH--NLYGEGPQSG---TPVEI 77

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                  +  + +V+  S  +   + + +++  +  DD+   +  R  +++ + +G
Sbjct: 78  CWQPEQVARRQMVVNVGSGMVPSPNQHRQIIDFVPVDDEAK-QAARVRYKNYQQAG 132


>gi|254242523|ref|ZP_04935845.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192]
 gi|126195901|gb|EAZ59964.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  + +G RV + C  E  R  L+  LW+++ + F+PH +   D     +  PV L +
Sbjct: 24  LAEKAWRQGMRVYLHCADEAQRRELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                N   +  L++      G V  + +V  ++  ++    +  R  +R  +  GY
Sbjct: 79  GETPGNHRDL--LINLTLEAPGFVANFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132


>gi|304410151|ref|ZP_07391770.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183]
 gi|307302138|ref|ZP_07581896.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175]
 gi|304351560|gb|EFM15959.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183]
 gi|306914176|gb|EFN44597.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175]
          Length = 165

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 14  EYNLLV--LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS 71
           E +LL   L Q  + K + V + C  ++   +++E LW ++   F+PH  ++  EG  + 
Sbjct: 33  EMHLLACQLAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG 90

Query: 72  FQPVLLTISSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129
             PV +    L AN S   +  L D+A      V++   + F+ N D   ++   R  +R
Sbjct: 91  -SPVEIGFDRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYR 145

Query: 130 SLKNSG 135
             +  G
Sbjct: 146 QYRGLG 151


>gi|153001633|ref|YP_001367314.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185]
 gi|151366251|gb|ABS09251.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185]
          Length = 174

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 14  EYNLLV--LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS 71
           E +LL   L Q  + K + V + C  ++   +++E LW ++   F+PH  ++  EG  + 
Sbjct: 42  EMHLLACQLAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG 99

Query: 72  FQPVLLTISSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129
             PV +    L AN S   +  L D+A      V++   + F+ N D   ++   R  +R
Sbjct: 100 -SPVEIGFDRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYR 154

Query: 130 SLKNSG 135
             +  G
Sbjct: 155 QYRGLG 160


>gi|33519517|ref|NP_878349.1| DNA polymerase III, chi subunit [Candidatus Blochmannia
          floridanus]
 gi|33517180|emb|CAD83562.1| DNA polymerase III, chi subunit [Candidatus Blochmannia
          floridanus]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          GK + + C +      +NE LW ++K+ FLPHG+
Sbjct: 38 GKTILITCDTHDQAKKINEALWNFEKNSFLPHGL 71


>gi|33151849|ref|NP_873202.1| DNA polymerase III subunit chi [Haemophilus ducreyi 35000HP]
 gi|33148070|gb|AAP95591.1| DNA polymerase III chi subunit [Haemophilus ducreyi 35000HP]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L    +  GKRV + C +E+   +++E LW  + D F+PH +     G+F+ +   +   
Sbjct: 35  LAAQAWRSGKRVLIACETEQQALNIDEALWAREPDSFVPHNL----AGEFTQYATPIEIC 90

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
                N     FL+   S+     DY      II+
Sbjct: 91  WQNKRNAQRRDFLI---SLQTNLPDYINTFTQIID 122


>gi|315125731|ref|YP_004067734.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913]
 gi|315014245|gb|ADT67583.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913]
          Length = 148

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 24 EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          +Y  G+RV +   SE   +S++E +WT+  D F+PH +
Sbjct: 34 QYRLGQRVFIFVDSEETANSIDETIWTFDADSFVPHNL 71


>gi|170718967|ref|YP_001784132.1| DNA polymerase III subunit chi [Haemophilus somnus 2336]
 gi|168827096|gb|ACA32467.1| DNA-directed DNA polymerase [Haemophilus somnus 2336]
          Length = 147

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 28  GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QPVLLTISSLNANT 86
           GK+V + C +E     L+E LW    D F+PH +     G+ +S+  P+ ++      NT
Sbjct: 37  GKKVLITCETEEQALKLDEALWQRDPDEFVPHNLS----GEMTSYVTPIEISWQG-KRNT 91

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                L++  S     +  + +++  +  D+Q  +   R  ++SL++ G+
Sbjct: 92  QRRDILINLQSQLPDFIMSFNQLIDFVPVDEQLKI-LARERYKSLRSQGW 140


>gi|134296644|ref|YP_001120379.1| DNA polymerase III subunit chi [Burkholderia vietnamiensis G4]
 gi|134139801|gb|ABO55544.1| DNA polymerase III chi subunit, HolC [Burkholderia vietnamiensis
          G4]
          Length = 138

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
          LL+  Y+ G+ V V   + R+R +L+E LWT+    F+PH      +   ++  P+LLT
Sbjct: 20 LLRKAYQAGQPVVVLAEAARLR-ALDERLWTFSPLDFIPH---CSVDSPHAAATPILLT 74


>gi|315268559|gb|ADT95412.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS678]
          Length = 167

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L Q  + K + V + C  ++   +++E LW ++   F+PH  ++  EG  +   PV +  
Sbjct: 43  LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 99

Query: 80  SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
             L AN S   +  L D+A      V++   + F+ N D   ++   R  +R  +  G
Sbjct: 100 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 153


>gi|84516311|ref|ZP_01003671.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis
           SKA53]
 gi|84510007|gb|EAQ06464.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis
           SKA53]
          Length = 156

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY  +    E  L +LL     +G RV V+     +   L+  LW    D FLPH
Sbjct: 1   MGAVFFYELQGAPLETTLPMLLDKARGQGWRVLVRGTDPALLAQLDAALWQGPVDHFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LL    L A        V  A++   +     +   + ++ +  
Sbjct: 61  GL---AGGPHDADQPILL--GDLPAAGFACVMAVGGAAVSAEEALLLARACILFDSAEHA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
             +  R  W++L ++G A
Sbjct: 116 KAQ-ARLQWKTLTDAGIA 132


>gi|113461407|ref|YP_719476.1| DNA polymerase III subunit chi [Haemophilus somnus 129PT]
 gi|112823450|gb|ABI25539.1| DNA polymerase III, chi subunit [Haemophilus somnus 129PT]
          Length = 147

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 28  GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QPVLLTISSLNANT 86
           GK+V + C +E     L+E LW    D F+PH +     G+ +S+  P+ ++      NT
Sbjct: 37  GKKVLITCETEEQALKLDEALWQRDPDEFVPHNLS----GEMTSYVTPIEISWQG-KRNT 91

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                L++  S     +  + +++  +  D+Q  +   R  ++SL++ G+
Sbjct: 92  QRRDILINLQSQLPDFIMSFNQLIDFVPVDEQLKI-LARERYKSLRSQGW 140


>gi|126175312|ref|YP_001051461.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS155]
 gi|125998517|gb|ABN62592.1| DNA polymerase III chi subunit, HolC [Shewanella baltica OS155]
          Length = 174

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L Q  + K + V + C  ++   +++E LW ++   F+PH  ++  EG  +   PV +  
Sbjct: 50  LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 106

Query: 80  SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
             L AN S   +  L D+A      V++   + F+ N D   ++   R  +R  +  G
Sbjct: 107 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 160


>gi|217972438|ref|YP_002357189.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223]
 gi|217497573|gb|ACK45766.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223]
          Length = 167

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L Q  + K + V + C  ++   +++E LW ++   F+PH  ++  EG  +   PV +  
Sbjct: 43  LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 99

Query: 80  SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
             L AN S   +  L D+A      V++   + F+ N D   ++   R  +R  +  G
Sbjct: 100 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 153


>gi|160876369|ref|YP_001555685.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195]
 gi|160861891|gb|ABX50425.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195]
          Length = 174

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L Q  + K + V + C  ++   +++E LW ++   F+PH  ++  EG  +   PV +  
Sbjct: 50  LAQQAFVKQQWVYIHCQDKQQAHAIDELLWQFEPSAFVPH--NLKGEGPMTG-SPVEIGF 106

Query: 80  SSLNANTS--TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
             L AN S   +  L D+A      V++   + F+ N D   ++   R  +R  +  G
Sbjct: 107 DRLGANKSRQVLINLADQAPPFA--VNFGHIIDFVANDDQHKAV--ARERYRQYRGLG 160


>gi|311281183|ref|YP_003943414.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1]
 gi|308750378|gb|ADO50130.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1]
          Length = 147

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND         E  +  +  + +  GKRV V C  E+    L+E LWT  
Sbjct: 1  MKNATFYLLDNDNTVDGLSTVEQLVCEIAAERWRAGKRVLVACEDEQQAIRLDEALWTRP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|33593407|ref|NP_881051.1| hypothetical protein BP2422 [Bordetella pertussis Tohama I]
 gi|33597810|ref|NP_885453.1| hypothetical protein BPP3286 [Bordetella parapertussis 12822]
 gi|33602712|ref|NP_890272.1| hypothetical protein BB3737 [Bordetella bronchiseptica RB50]
 gi|33572763|emb|CAE42693.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|33574239|emb|CAE38571.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33577154|emb|CAE35711.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gi|332382816|gb|AEE67663.1| hypothetical protein BPTD_2379 [Bordetella pertussis CS]
          Length = 151

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 10/120 (8%)

Query: 24  EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLN 83
            ++ G+R+ V C       + +  LW  +   F+PH   V      ++  PVLLT     
Sbjct: 24  RFQAGQRLVVYCADGGRLAAFDRMLWALEDVSFVPH---VLANDALAADTPVLLTAGDPA 80

Query: 84  ANTS------TIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           A  +      +  +L++       + D YE+++ I+ +DD    +  R  WR  +N+G+A
Sbjct: 81  AALALATTGDSRPWLLNLDDGCPPNFDGYERLLEIV-SDDPADRQAARQRWRDYQNAGHA 139


>gi|283834894|ref|ZP_06354635.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220]
 gi|291069153|gb|EFE07262.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220]
          Length = 147

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND + + L  ++        + +  GKRV + C +E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTQQDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|167856071|ref|ZP_02478814.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755]
 gi|219871803|ref|YP_002476178.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165]
 gi|167852820|gb|EDS24091.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755]
 gi|219692007|gb|ACL33230.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165]
          Length = 145

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          L    + +GKRV + C +E    SL+E LW  + D F+PH +
Sbjct: 27 LAAKAWRQGKRVLIACETEEQAFSLDEALWAREADDFVPHNL 68


>gi|26987715|ref|NP_743140.1| DNA polymerase III subunit chi [Pseudomonas putida KT2440]
 gi|148546260|ref|YP_001266362.1| DNA polymerase III subunit chi [Pseudomonas putida F1]
 gi|24982403|gb|AAN66604.1|AE016288_3 DNA polymerase III, chi subunit [Pseudomonas putida KT2440]
 gi|148510318|gb|ABQ77178.1| DNA polymerase III, chi subunit [Pseudomonas putida F1]
          Length = 142

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 30/129 (23%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G RV + C     R  L++ LW +K + F+PH                   +
Sbjct: 24  LCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAFVPH------------------DL 65

Query: 80  SSLNANTSTIRFLVDEASMH-----------IGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
           + ++A+   +  L D A  H            G V  +E+V  I+  ++    +  R  +
Sbjct: 66  AEVHADADVVLGLADNAGEHHGLLINLGASVPGFVGQFERVAEIV-VEEPAIRQSARERF 124

Query: 129 RSLKNSGYA 137
           R  +  GYA
Sbjct: 125 RFYREQGYA 133


>gi|237729196|ref|ZP_04559677.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2]
 gi|226908925|gb|EEH94843.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2]
          Length = 147

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          MR   FY   ND         E  +  +  + +  GKRV + C +E+    L+E LW   
Sbjct: 1  MRNATFYILDNDNTVDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|261342658|ref|ZP_05970516.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC
          35316]
 gi|288315307|gb|EFC54245.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC
          35316]
          Length = 147

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND + + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTQQDGLSAVEQLVCDIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|167580139|ref|ZP_02373013.1| DNA polymerase III subunit chi [Burkholderia thailandensis TXDOH]
          Length = 138

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
          LL+  Y+ G+ V V     R+R +L+E+LWT+    F+PH      +   ++  P++LT
Sbjct: 20 LLRKAYQAGQPVVVCAEPARLR-ALDEHLWTFSPLDFIPH---CAVDNAHAASTPIVLT 74


>gi|283786941|ref|YP_003366806.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168]
 gi|282950395|emb|CBG90043.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168]
          Length = 147

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          MR   FY   ND         E  +  +  + +  GKRV + C +E+    L+E LW   
Sbjct: 1  MRNATFYLLDNDNTADGLSAVEQLVCEIAAERWRSGKRVLIACENEQQALRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|206562896|ref|YP_002233659.1| hypothetical protein BCAM1044 [Burkholderia cenocepacia J2315]
 gi|198038936|emb|CAR54898.1| hypothetical phage protein [Burkholderia cenocepacia J2315]
          Length = 106

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 4/41 (9%)

Query: 6   FYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNE 46
            + ++++W+  L      EY +G+R++++C  E VRD+LNE
Sbjct: 66  LHEYQSNWDTGLPA----EYAQGERIAMECAVEAVRDALNE 102


>gi|229588595|ref|YP_002870714.1| DNA polymerase III subunit chi [Pseudomonas fluorescens SBW25]
 gi|229360461|emb|CAY47318.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens
          SBW25]
          Length = 142

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
          L +  +  G R+ + C     RD L+  LW +K + F+PHG
Sbjct: 24 LTEKAWRMGHRIYLHCSDAAQRDELDARLWRFKGESFVPHG 64


>gi|312959166|ref|ZP_07773685.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6]
 gi|311286936|gb|EFQ65498.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6]
          Length = 142

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
          L +  +  G R+ + C     RD L+  LW +K + F+PHG
Sbjct: 24 LTEKAWRMGHRIYLHCSDATQRDELDARLWRFKGESFVPHG 64


>gi|157804263|ref|YP_001492812.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel]
 gi|157785526|gb|ABV74027.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel]
          Length = 154

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI 100
           ++ LN+ LWT+ +  F+PHG  +  + +    QP+ +T    N N +++  ++  + + I
Sbjct: 42  QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLIII--SPIDI 96

Query: 101 GDV----DYYE--KVVFII 113
           G +    DY E  K + II
Sbjct: 97  GKILQVKDYIEVFKRIIII 115


>gi|299771882|ref|YP_003733908.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           sp. DR1]
 gi|298701970|gb|ADI92535.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           sp. DR1]
          Length = 135

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E  +     L +   +K  ++   C   +++  L+E LW +    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDMQLQQMLDERLWEFDPVSFI 60

Query: 58  PHGVDVGDEG-DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HGVD  D     S+ QP+   +   N N   +             VD++  ++ I+  +
Sbjct: 61  AHGVDQTDAAVCISAKQPLEQGLLVFNFNNHALE-----------QVDHFSHIIEIVENN 109

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           +    + GR  ++  +  G  P
Sbjct: 110 ETAK-QIGREKFKMYRRLGIEP 130


>gi|15599027|ref|NP_252521.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAO1]
 gi|107103352|ref|ZP_01367270.1| hypothetical protein PaerPA_01004421 [Pseudomonas aeruginosa PACS2]
 gi|254236736|ref|ZP_04930059.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719]
 gi|296387651|ref|ZP_06877126.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAb1]
 gi|12230135|sp|O68823|HOLC_PSEAE RecName: Full=DNA polymerase III subunit chi
 gi|9950007|gb|AAG07219.1|AE004800_8 DNA polymerase III, chi subunit [Pseudomonas aeruginosa PAO1]
 gi|2984772|gb|AAD04822.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa]
 gi|126168667|gb|EAZ54178.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719]
          Length = 142

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  + +G +V + C  E  R  L+  LW+++ + F+PH +   D     +  PV L +
Sbjct: 24  LAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                N   +  L++      G V  + +V  ++  ++    +  R  +R  +  GY
Sbjct: 79  GEPPGNHRDL--LINLTLEAPGFVPNFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132


>gi|49076858|gb|AAT49608.1| PA3832 [synthetic construct]
          Length = 143

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  + +G +V + C  E  R  L+  LW+++ + F+PH +   D     +  PV L +
Sbjct: 24  LAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAFIPHSLAEED-----AEAPVALGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                N   +  L++      G V  + +V  ++  ++    +  R  +R  +  GY
Sbjct: 79  GEPPGNHRDL--LINLTLEAPGFVPNFSRVAELV-VEEPAIRQAARDKFRFYREQGY 132


>gi|240948837|ref|ZP_04753193.1| DNA polymerase III subunit chi [Actinobacillus minor NM305]
 gi|240296652|gb|EER47263.1| DNA polymerase III subunit chi [Actinobacillus minor NM305]
          Length = 140

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 1  MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
          M+ + FY    D  Y     L    +  GKRV + C +E+    ++E LW  + D F+PH
Sbjct: 1  MKQVQFYVLTQDNIYEQACDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60

Query: 60 GV 61
           +
Sbjct: 61 NL 62


>gi|325124202|gb|ADY83725.1| DNA polymerase III, chi subunit [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 135

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E  +     L +   +K  ++   C   +++ +L+E LW +    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDVQLQQTLDERLWDFDPASFI 60

Query: 58  PHGVDVGDEG-DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HG+D  +     S+ QP+   +   N N   +             VD++  ++ I+  +
Sbjct: 61  AHGIDQAEAAVCISAKQPLEQGLLVFNFNNHALE-----------QVDHFSHIIEIVENN 109

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           +    + GR  ++  +  G  P
Sbjct: 110 ETAK-QIGREKFKMYRRLGIEP 130


>gi|237746981|ref|ZP_04577461.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS]
 gi|229378332|gb|EEO28423.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS]
          Length = 141

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           R+ +      + + L++ LWT+    FLPH + +GD    +S  PVLLT           
Sbjct: 32  RIVILSSDRNLLNRLDDALWTFSDSDFLPHAM-LGDR--LASRSPVLLTYDD-QCEMPHH 87

Query: 90  RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           + LV+ +         +++++ +++T+   + E GR  +   +  GYA
Sbjct: 88  QILVNLSPAIPACYARFDRLIELVSTETADT-EAGRQRYVHYRERGYA 134


>gi|194749909|ref|XP_001957378.1| GF10393 [Drosophila ananassae]
 gi|190624660|gb|EDV40184.1| GF10393 [Drosophila ananassae]
          Length = 817

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           +E+ R SL + L TWK D  L  G  +VG    + ++Q + LT++SL   T  +R
Sbjct: 95  TEKCRQSLTKELQTWKADVVLHDGAPNVGRNWIYDAYQQICLTLNSLKLATQFLR 149


>gi|206561013|ref|YP_002231778.1| DNA polymerase III subunit chi [Burkholderia cenocepacia J2315]
 gi|198037055|emb|CAR52976.1| putative DNA polymerase III chi subunit [Burkholderia cenocepacia
          J2315]
          Length = 138

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
          LL+  Y+ G+ V V     R+R +L+E LWT+    F+PH    G + + ++  P++L 
Sbjct: 20 LLRKAYQAGQPVVVLAEPARLR-ALDERLWTFSPLDFIPH---CGVDSEHAAGTPIVLA 74


>gi|153877788|ref|ZP_02004368.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS]
 gi|152065748|gb|EDN65632.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS]
          Length = 143

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G R+ +Q  S      L+ +LW +K++ FLPH  D+  E    S  P+ +  S+     
Sbjct: 31  QGYRIYIQTTSLAQAQQLDNFLWVFKEESFLPH--DIYPEMS-ESLAPIRIGYSAQVCEG 87

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
             +  L++         + ++++  I+N D   + + GR  +R  ++  Y
Sbjct: 88  MDV--LINLTETVPPFFESFQRIAEIVN-DTPYAKQAGRTRYRFYRDKAY 134


>gi|107023403|ref|YP_621730.1| DNA polymerase III subunit chi [Burkholderia cenocepacia AU 1054]
 gi|116690485|ref|YP_836108.1| DNA polymerase III subunit chi [Burkholderia cenocepacia HI2424]
 gi|170733806|ref|YP_001765753.1| DNA polymerase III subunit chi [Burkholderia cenocepacia MC0-3]
 gi|254247473|ref|ZP_04940794.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia
          PC184]
 gi|105893592|gb|ABF76757.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia AU
          1054]
 gi|116648574|gb|ABK09215.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia
          HI2424]
 gi|124872249|gb|EAY63965.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia
          PC184]
 gi|169817048|gb|ACA91631.1| DNA polymerase III chi subunit HolC [Burkholderia cenocepacia
          MC0-3]
          Length = 138

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
          LL+  Y+ G+ V V     R+R +L+E LWT+    F+PH    G + + ++  P++L 
Sbjct: 20 LLRKAYQAGQPVVVLAEPARLR-ALDERLWTFSPLDFIPH---CGVDSEHAAGTPIVLA 74


>gi|330811516|ref|YP_004355978.1| DNA polymerase III, chi subunit [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327379624|gb|AEA70974.1| Putative DNA polymerase III, chi subunit [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 142

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
          L++  +  G R+ + C     R+ L+  LW +K + F+PHG
Sbjct: 24 LVEKAWRMGHRIYLHCSDAAQREDLDARLWAFKGESFVPHG 64


>gi|262045297|ref|ZP_06018322.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|330016473|ref|ZP_08308446.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3]
 gi|259037353|gb|EEW38599.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|328528834|gb|EGF55777.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3]
          Length = 147

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW+  
Sbjct: 1  MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|313497346|gb|ADR58712.1| HolC [Pseudomonas putida BIRD-1]
          Length = 142

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G RV + C     R  L++ LW +K + F+PH     D  +  +   V+L +
Sbjct: 24  LCEKAWRLGHRVYLHCQDAEQRIELDQRLWRFKGEAFVPH-----DLAEVHADADVVLGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           +  NA       L++  +   G V  +E+V  I+  ++    +  R  +R  +  GYA
Sbjct: 79  TD-NAGEHH-GLLINLGASVPGFVGQFERVAEIV-VEEPAIRQSARERFRFYREQGYA 133


>gi|238892748|ref|YP_002917482.1| DNA polymerase III subunit chi [Klebsiella pneumoniae NTUH-K2044]
 gi|238545064|dbj|BAH61415.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 158

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW+  
Sbjct: 12 MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 71

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 72 PESFVPHNL 80


>gi|58038767|ref|YP_190731.1| DNA polymerase III subunit chi [Gluconobacter oxydans 621H]
 gi|58001181|gb|AAW60075.1| DNA polymerase III, chi subunit [Gluconobacter oxydans 621H]
          Length = 147

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E  L  LL    + G+R  V+C       +L+  LW  +   +LPHG     +   +  Q
Sbjct: 14  EEALPALLGRTLDAGERAVVRCPDAAAVMALDAALWACRDPVWLPHGT---AKSGHAVRQ 70

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           P+ LT      N +   F VD A     +   + ++  + +  +  S++  R  W ++K+
Sbjct: 71  PIWLTEGEDVPNEARFLFRVDGAGSD--EFAPFTRIFDLFDGGNPQSVQRARQRWVAMKS 128

Query: 134 SGY 136
            G+
Sbjct: 129 FGH 131


>gi|238798774|ref|ZP_04642245.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC
           43969]
 gi|238717406|gb|EEQ09251.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC
           43969]
          Length = 149

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 23  DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSL 82
           + +  GKRV + C SE     L+E LW    D F+PH +  G+   + +  PV L     
Sbjct: 31  ERWRAGKRVLIACESEEQAQRLDEALWQRTPDQFVPHNL-AGEGPKYGA--PVELAWPER 87

Query: 83  NANTST---IRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
             N+     I  L + A        ++E V F+   ++   L   R  ++S ++ G+
Sbjct: 88  RGNSPRDLLISLLPEFAGFATA---FHEVVDFVPYEENLKQL--ARDRYKSYRSVGF 139


>gi|307261985|ref|ZP_07543641.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306868316|gb|EFN00137.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
          Length = 145

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          L  D +  GKRV + C +E+   +++E LW    D F+PH +
Sbjct: 27 LAADAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNL 68


>gi|238785040|ref|ZP_04629037.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC
           43970]
 gi|238714081|gb|EEQ06096.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC
           43970]
          Length = 149

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 28  GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTS 87
           GKRV + C SE     L+E LW    D F+PH +  G+   + +  PV L       N+ 
Sbjct: 36  GKRVLIACESEEQAQRLDEALWQRAPDQFVPHNL-AGEGPKYGA--PVELAWPERRGNSP 92

Query: 88  T---IRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
               I  L + A        ++E V F+   ++   L   R  ++S ++ G+
Sbjct: 93  RDLLISLLPEFAGFATA---FHEVVDFVPYEENLKQL--ARDRYKSYRSVGF 139


>gi|303251672|ref|ZP_07337845.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307246420|ref|ZP_07528494.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|307250778|ref|ZP_07532709.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|307253153|ref|ZP_07535032.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307255405|ref|ZP_07537213.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307257574|ref|ZP_07539335.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|307259855|ref|ZP_07541571.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|302649514|gb|EFL79697.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306852671|gb|EFM84902.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306857190|gb|EFM89315.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306859366|gb|EFM91400.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306861634|gb|EFM93620.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306863922|gb|EFM95844.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306866078|gb|EFM97950.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
          Length = 145

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          L  D +  GKRV + C +E+   +++E LW    D F+PH +
Sbjct: 27 LAADAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNL 68


>gi|152973136|ref|YP_001338282.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|150957985|gb|ABR80015.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
          Length = 147

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW+  
Sbjct: 1  MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|257465132|ref|ZP_05629503.1| DNA polymerase III subunit chi [Actinobacillus minor 202]
 gi|257450792|gb|EEV24835.1| DNA polymerase III subunit chi [Actinobacillus minor 202]
          Length = 140

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 1  MRTLLFYRFKNDWEYNLLV-LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
          M+ + FY    D  Y     L    +  GKRV + C +E+    ++E LW  + D F+PH
Sbjct: 1  MKQVQFYVLTQDNIYEHTCDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60

Query: 60 GV 61
           +
Sbjct: 61 NL 62


>gi|77457215|ref|YP_346720.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf0-1]
 gi|77381218|gb|ABA72731.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens
          Pf0-1]
          Length = 142

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
          G R+ + C     RD L+  LW +K + F+PHG
Sbjct: 32 GHRIYLHCSDAAQRDDLDARLWAFKGETFVPHG 64


>gi|157147737|ref|YP_001455056.1| DNA polymerase III subunit chi [Citrobacter koseri ATCC BAA-895]
 gi|157084942|gb|ABV14620.1| hypothetical protein CKO_03541 [Citrobacter koseri ATCC BAA-895]
          Length = 147

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYILDNDTTIDGLSAVEQLVCDIAAERWRSGKRVLIACEDEKQAIRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|70728447|ref|YP_258196.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf-5]
 gi|68342746|gb|AAY90352.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens Pf-5]
          Length = 142

 Score = 35.4 bits (80), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
          G R+ + C     RD L+  LW +K + F+PHG
Sbjct: 32 GHRIYLHCSDAEQRDELDARLWRFKGETFVPHG 64


>gi|330962171|gb|EGH62431.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 142

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G +V + C     R+ L+  LW +K + FLPHG D   + D     PV+L  
Sbjct: 24  LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFKGEVFLPHG-DAESDHD----APVVL-- 76

Query: 80  SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
             L A+      L+    + I      + +V  ++  D    L   R  +RS +  GY P
Sbjct: 77  -GLGADPGAHDDLLVNLDLSIPAFFSRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134


>gi|149907706|ref|ZP_01896453.1| DNA polymerase III, chi subunit [Moritella sp. PE36]
 gi|149809376|gb|EDM69305.1| DNA polymerase III, chi subunit [Moritella sp. PE36]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
          Y++G+RV +    E   + ++EYLW      F+PH + 
Sbjct: 35 YQQGQRVYIHANDESAANQVDEYLWQLDASSFVPHNLQ 72


>gi|104783413|ref|YP_609911.1| DNA polymerase III subunit chi [Pseudomonas entomophila L48]
 gi|95112400|emb|CAK17127.1| DNA polymerase III, chi subunit [Pseudomonas entomophila L48]
          Length = 142

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G RV + C  E  R  L+E LW +K + F+PH           + Q   + +
Sbjct: 24  LCEKAWRLGHRVYLHCQDEAQRLDLDERLWRFKGEAFIPH-------NHAETHQDASVAL 76

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
              N        L++      G V  +E+V  I+  +    L   R  +R  +  GYA
Sbjct: 77  GLGNDAGEHRDLLINLGGDVPGFVGQFERVAEIVVEEPTIRLA-ARERFRFYREQGYA 133


>gi|146313283|ref|YP_001178357.1| DNA polymerase III subunit chi [Enterobacter sp. 638]
 gi|145320159|gb|ABP62306.1| DNA polymerase III, chi subunit [Enterobacter sp. 638]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|37528303|ref|NP_931648.1| DNA polymerase III subunit chi [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36787741|emb|CAE16854.1| DNA polymerase III, chi subunit [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 149

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 23 DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          D++  GKRV + C +++  + L+E LW  +   F+PH +
Sbjct: 31 DQWRAGKRVLIACENQQQAEKLDEALWQREPHQFVPHNL 69


>gi|30065454|ref|NP_839625.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T]
 gi|56480552|ref|NP_709942.2| DNA polymerase III subunit chi [Shigella flexneri 2a str. 301]
 gi|30043718|gb|AAP19437.1| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 2457T]
 gi|56384103|gb|AAN45649.2| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 301]
 gi|313646459|gb|EFS10921.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T]
 gi|332748944|gb|EGJ79367.1| DNA polymerase III subunit chi [Shigella flexneri K-671]
 gi|332749219|gb|EGJ79640.1| DNA polymerase III subunit chi [Shigella flexneri 4343-70]
 gi|332749835|gb|EGJ80248.1| DNA polymerase III subunit chi [Shigella flexneri 2747-71]
 gi|332763117|gb|EGJ93360.1| DNA polymerase III chi subunit, HolC family protein [Shigella
          flexneri 2930-71]
 gi|333009110|gb|EGK28566.1| DNA polymerase III subunit chi [Shigella flexneri K-218]
 gi|333011947|gb|EGK31332.1| DNA polymerase III subunit chi [Shigella flexneri K-304]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|43310|emb|CAA33226.1| unnamed protein product [Escherichia coli K-12]
          Length = 102

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|253775118|ref|YP_003037949.1| DNA polymerase III subunit chi [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254164184|ref|YP_003047294.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606]
 gi|297520319|ref|ZP_06938705.1| DNA polymerase III subunit chi [Escherichia coli OP50]
 gi|301028096|ref|ZP_07191374.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1]
 gi|312965939|ref|ZP_07780165.1| DNA polymerase III subunit chi [Escherichia coli 2362-75]
 gi|31323177|gb|AAP43522.1| HolC [Escherichia coli B]
 gi|242379779|emb|CAQ34606.1| DNA polymerase III, chi subunit, subunit of DNA polymerase III,
          preinitiation complex and DNA polymerase III,
          holoenzyme [Escherichia coli BL21(DE3)]
 gi|253326162|gb|ACT30764.1| DNA-directed DNA polymerase [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253976087|gb|ACT41758.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606]
 gi|253980243|gb|ACT45913.1| DNA polymerase III subunit chi [Escherichia coli BL21(DE3)]
 gi|299878813|gb|EFI87024.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1]
 gi|312289182|gb|EFR17076.1| DNA polymerase III subunit chi [Escherichia coli 2362-75]
 gi|323975398|gb|EGB70499.1| DNA polymerase III chi subunit protein [Escherichia coli TW10509]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTIDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|323171704|gb|EFZ57350.1| DNA polymerase III subunit chi [Escherichia coli LT-68]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWHSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|296104926|ref|YP_003615072.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295059385|gb|ADF64123.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|28868481|ref|NP_791100.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968385|ref|ZP_03396529.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384651|ref|ZP_07233069.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059575|ref|ZP_07251116.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           K40]
 gi|302133009|ref|ZP_07258999.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851719|gb|AAO54795.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213927023|gb|EEB60574.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|331015237|gb|EGH95293.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 142

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G +V + C     R+ L+  LW ++ + FLPHG D   + D     PV+L  
Sbjct: 24  LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-DAESDHD----APVVL-- 76

Query: 80  SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
             L  ++ T + L+    + I      + +V  ++  D    L   R  +RS +  GY P
Sbjct: 77  -GLGDDSGTHQDLLVNLDLSIPAFFKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134


>gi|15804851|ref|NP_290892.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 EDL933]
 gi|15834490|ref|NP_313263.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
          Sakai]
 gi|26251167|ref|NP_757207.1| DNA polymerase III subunit chi [Escherichia coli CFT073]
 gi|74314738|ref|YP_313157.1| DNA polymerase III subunit chi [Shigella sonnei Ss046]
 gi|82546488|ref|YP_410435.1| DNA polymerase III subunit chi [Shigella boydii Sb227]
 gi|82779325|ref|YP_405674.1| DNA polymerase III subunit chi [Shigella dysenteriae Sd197]
 gi|91213814|ref|YP_543800.1| DNA polymerase III subunit chi [Escherichia coli UTI89]
 gi|110644618|ref|YP_672348.1| DNA polymerase III subunit chi [Escherichia coli 536]
 gi|110808001|ref|YP_691521.1| DNA polymerase III subunit chi [Shigella flexneri 5 str. 8401]
 gi|117626603|ref|YP_859926.1| DNA polymerase III subunit chi [Escherichia coli APEC O1]
 gi|157159204|ref|YP_001465767.1| DNA polymerase III subunit chi [Escherichia coli E24377A]
 gi|157163734|ref|YP_001461052.1| DNA polymerase III subunit chi [Escherichia coli HS]
 gi|168751048|ref|ZP_02776070.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4113]
 gi|168754839|ref|ZP_02779846.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4401]
 gi|168760512|ref|ZP_02785519.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4501]
 gi|168766548|ref|ZP_02791555.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4486]
 gi|168774021|ref|ZP_02799028.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4196]
 gi|168782784|ref|ZP_02807791.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4076]
 gi|168784907|ref|ZP_02809914.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC869]
 gi|168797837|ref|ZP_02822844.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC508]
 gi|170021733|ref|YP_001726687.1| DNA polymerase III subunit chi [Escherichia coli ATCC 8739]
 gi|170766907|ref|ZP_02901360.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627]
 gi|187734100|ref|YP_001882957.1| DNA polymerase III subunit chi [Shigella boydii CDC 3083-94]
 gi|188496447|ref|ZP_03003717.1| DNA polymerase III, chi subunit [Escherichia coli 53638]
 gi|191167277|ref|ZP_03029095.1| DNA polymerase III, chi subunit [Escherichia coli B7A]
 gi|191170788|ref|ZP_03032340.1| DNA polymerase III, chi subunit [Escherichia coli F11]
 gi|193069853|ref|ZP_03050803.1| DNA polymerase III, chi subunit [Escherichia coli E110019]
 gi|194426628|ref|ZP_03059182.1| DNA polymerase III, chi subunit [Escherichia coli B171]
 gi|194433898|ref|ZP_03066171.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012]
 gi|195937284|ref|ZP_03082666.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
          EC4024]
 gi|208805655|ref|ZP_03247992.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4206]
 gi|208813184|ref|ZP_03254513.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4045]
 gi|208821682|ref|ZP_03262002.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4042]
 gi|209400926|ref|YP_002273803.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4115]
 gi|209921756|ref|YP_002295840.1| DNA polymerase III subunit chi [Escherichia coli SE11]
 gi|215489601|ref|YP_002332032.1| DNA polymerase III subunit chi [Escherichia coli O127:H6 str.
          E2348/69]
 gi|217325710|ref|ZP_03441794.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          TW14588]
 gi|218551555|ref|YP_002385347.1| DNA polymerase III subunit chi [Escherichia fergusonii ATCC
          35469]
 gi|218556806|ref|YP_002389720.1| DNA polymerase III subunit chi [Escherichia coli IAI1]
 gi|218561417|ref|YP_002394330.1| DNA polymerase III subunit chi [Escherichia coli S88]
 gi|218692646|ref|YP_002400858.1| DNA polymerase III subunit chi [Escherichia coli ED1a]
 gi|218698007|ref|YP_002405674.1| DNA polymerase III subunit chi [Escherichia coli 55989]
 gi|218702962|ref|YP_002410591.1| DNA polymerase III subunit chi [Escherichia coli IAI39]
 gi|218707865|ref|YP_002415384.1| DNA polymerase III subunit chi [Escherichia coli UMN026]
 gi|227886687|ref|ZP_04004492.1| DNA polymerase III, chi subunit [Escherichia coli 83972]
 gi|237703934|ref|ZP_04534415.1| DNA polymerase III [Escherichia sp. 3_2_53FAA]
 gi|254796279|ref|YP_003081116.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
          TW14359]
 gi|260847090|ref|YP_003224868.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str.
          12009]
 gi|260871011|ref|YP_003237413.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str.
          11128]
 gi|261225378|ref|ZP_05939659.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261255369|ref|ZP_05947902.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          FRIK966]
 gi|291285671|ref|YP_003502489.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str.
          CB9615]
 gi|293402884|ref|ZP_06646981.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412]
 gi|293417758|ref|ZP_06660380.1| DNA polymerase III subunit chi [Escherichia coli B185]
 gi|298378410|ref|ZP_06988294.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302]
 gi|300899408|ref|ZP_07117663.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1]
 gi|300906106|ref|ZP_07123825.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1]
 gi|300923936|ref|ZP_07139946.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1]
 gi|300928084|ref|ZP_07143632.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1]
 gi|300950213|ref|ZP_07164153.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1]
 gi|300957119|ref|ZP_07169360.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1]
 gi|300972384|ref|ZP_07171917.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1]
 gi|300988163|ref|ZP_07178583.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1]
 gi|301050055|ref|ZP_07196967.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1]
 gi|301304690|ref|ZP_07210798.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1]
 gi|301643394|ref|ZP_07243444.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1]
 gi|306815523|ref|ZP_07449672.1| DNA polymerase III subunit chi [Escherichia coli NC101]
 gi|307140954|ref|ZP_07500310.1| DNA polymerase III subunit chi [Escherichia coli H736]
 gi|309784108|ref|ZP_07678750.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617]
 gi|312973924|ref|ZP_07788095.1| DNA polymerase III subunit chi [Escherichia coli 1827-70]
 gi|331650392|ref|ZP_08351464.1| DNA polymerase III subunit chi [Escherichia coli M605]
 gi|331656093|ref|ZP_08357081.1| DNA polymerase III subunit chi [Escherichia coli M718]
 gi|331660840|ref|ZP_08361772.1| DNA polymerase III subunit chi [Escherichia coli TA206]
 gi|331671167|ref|ZP_08372000.1| DNA polymerase III subunit chi [Escherichia coli TA271]
 gi|12519268|gb|AAG59458.1|AE005657_18 DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EDL933]
 gi|26111599|gb|AAN83781.1|AE016771_292 DNA polymerase III, chi subunit [Escherichia coli CFT073]
 gi|13364714|dbj|BAB38659.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str.
          Sakai]
 gi|73858215|gb|AAZ90922.1| DNA polymerase III chi subunit [Shigella sonnei Ss046]
 gi|81243473|gb|ABB64183.1| DNA polymerase III, chi subunit [Shigella dysenteriae Sd197]
 gi|81247899|gb|ABB68607.1| DNA polymerase III chi subunit [Shigella boydii Sb227]
 gi|91075388|gb|ABE10269.1| DNA polymerase III, chi subunit [Escherichia coli UTI89]
 gi|110346210|gb|ABG72447.1| DNA polymerase III, chi subunit [Escherichia coli 536]
 gi|110617549|gb|ABF06216.1| DNA polymerase III, chi subunit [Shigella flexneri 5 str. 8401]
 gi|115515727|gb|ABJ03802.1| DNA polymerase III subunit chi [Escherichia coli APEC O1]
 gi|157069414|gb|ABV08669.1| DNA polymerase III, chi subunit [Escherichia coli HS]
 gi|157081234|gb|ABV20942.1| DNA polymerase III, chi subunit [Escherichia coli E24377A]
 gi|169756661|gb|ACA79360.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739]
 gi|170124345|gb|EDS93276.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627]
 gi|187431092|gb|ACD10366.1| DNA polymerase III, chi subunit [Shigella boydii CDC 3083-94]
 gi|187770208|gb|EDU34052.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4196]
 gi|188014810|gb|EDU52932.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4113]
 gi|188491646|gb|EDU66749.1| DNA polymerase III, chi subunit [Escherichia coli 53638]
 gi|188999780|gb|EDU68766.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357771|gb|EDU76190.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4401]
 gi|189364253|gb|EDU82672.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4486]
 gi|189368872|gb|EDU87288.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4501]
 gi|189375030|gb|EDU93446.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC869]
 gi|189379542|gb|EDU97958.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC508]
 gi|190902730|gb|EDV62461.1| DNA polymerase III, chi subunit [Escherichia coli B7A]
 gi|190909012|gb|EDV68599.1| DNA polymerase III, chi subunit [Escherichia coli F11]
 gi|192956907|gb|EDV87360.1| DNA polymerase III, chi subunit [Escherichia coli E110019]
 gi|194415367|gb|EDX31635.1| DNA polymerase III, chi subunit [Escherichia coli B171]
 gi|194417879|gb|EDX33975.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012]
 gi|208725456|gb|EDZ75057.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4206]
 gi|208734461|gb|EDZ83148.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4045]
 gi|208741805|gb|EDZ89487.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4042]
 gi|209162326|gb|ACI39759.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          EC4115]
 gi|209749468|gb|ACI73041.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749470|gb|ACI73042.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749472|gb|ACI73043.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749474|gb|ACI73044.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749476|gb|ACI73045.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209915015|dbj|BAG80089.1| DNA polymerase III chi subunit [Escherichia coli SE11]
 gi|215267673|emb|CAS12131.1| DNA polymerase III, chi subunit [Escherichia coli O127:H6 str.
          E2348/69]
 gi|217321931|gb|EEC30355.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          TW14588]
 gi|218354739|emb|CAV01801.1| DNA polymerase III, chi subunit [Escherichia coli 55989]
 gi|218359097|emb|CAQ91758.1| DNA polymerase III, chi subunit [Escherichia fergusonii ATCC
          35469]
 gi|218363575|emb|CAR01232.1| DNA polymerase III, chi subunit [Escherichia coli IAI1]
 gi|218368186|emb|CAR05994.1| DNA polymerase III, chi subunit [Escherichia coli S88]
 gi|218372948|emb|CAR20829.1| DNA polymerase III, chi subunit [Escherichia coli IAI39]
 gi|218430210|emb|CAR11067.1| DNA polymerase III, chi subunit [Escherichia coli ED1a]
 gi|218434962|emb|CAR15903.1| DNA polymerase III, chi subunit [Escherichia coli UMN026]
 gi|222036031|emb|CAP78776.1| DNA polymerase III subunit chi [Escherichia coli LF82]
 gi|226901846|gb|EEH88105.1| DNA polymerase III [Escherichia sp. 3_2_53FAA]
 gi|227836260|gb|EEJ46726.1| DNA polymerase III, chi subunit [Escherichia coli 83972]
 gi|254595679|gb|ACT75040.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|257762237|dbj|BAI33734.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str.
          12009]
 gi|257767367|dbj|BAI38862.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str.
          11128]
 gi|281181357|dbj|BAI57687.1| DNA polymerase III chi subunit [Escherichia coli SE15]
 gi|284924429|emb|CBG37554.1| DNA polymerase III, chi subunit [Escherichia coli 042]
 gi|290765544|gb|ADD59505.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str.
          CB9615]
 gi|291429799|gb|EFF02813.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412]
 gi|291430476|gb|EFF03474.1| DNA polymerase III subunit chi [Escherichia coli B185]
 gi|294489855|gb|ADE88611.1| DNA polymerase III, chi subunit [Escherichia coli IHE3034]
 gi|298280744|gb|EFI22245.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302]
 gi|300298213|gb|EFJ54598.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1]
 gi|300305973|gb|EFJ60493.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1]
 gi|300316137|gb|EFJ65921.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1]
 gi|300356986|gb|EFJ72856.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1]
 gi|300402049|gb|EFJ85587.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1]
 gi|300410963|gb|EFJ94501.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1]
 gi|300419814|gb|EFK03125.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1]
 gi|300450434|gb|EFK14054.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1]
 gi|300463881|gb|EFK27374.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1]
 gi|300840040|gb|EFK67800.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1]
 gi|301078224|gb|EFK93030.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1]
 gi|305851185|gb|EFM51640.1| DNA polymerase III subunit chi [Escherichia coli NC101]
 gi|307556429|gb|ADN49204.1| DNA polymerase III, chi subunit [Escherichia coli ABU 83972]
 gi|307629335|gb|ADN73639.1| DNA polymerase III subunit chi [Escherichia coli UM146]
 gi|308928101|gb|EFP73566.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617]
 gi|309704763|emb|CBJ04114.1| DNA polymerase III, chi subunit [Escherichia coli ETEC H10407]
 gi|310331458|gb|EFP98714.1| DNA polymerase III subunit chi [Escherichia coli 1827-70]
 gi|312948912|gb|ADR29739.1| DNA polymerase III subunit chi [Escherichia coli O83:H1 str. NRG
          857C]
 gi|315255616|gb|EFU35584.1| DNA polymerase III subunit chi [Escherichia coli MS 85-1]
 gi|315288384|gb|EFU47782.1| DNA polymerase III subunit chi [Escherichia coli MS 110-3]
 gi|315293630|gb|EFU52982.1| DNA polymerase III subunit chi [Escherichia coli MS 153-1]
 gi|315298975|gb|EFU58229.1| DNA polymerase III subunit chi [Escherichia coli MS 16-3]
 gi|320174753|gb|EFW49882.1| DNA polymerase III chi subunit [Shigella dysenteriae CDC 74-1112]
 gi|320177613|gb|EFW52603.1| DNA polymerase III chi subunit [Shigella boydii ATCC 9905]
 gi|320190607|gb|EFW65257.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str.
          EC1212]
 gi|320193623|gb|EFW68258.1| DNA polymerase III chi subunit [Escherichia coli WV_060327]
 gi|320639016|gb|EFX08662.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
          G5101]
 gi|320644386|gb|EFX13451.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str.
          493-89]
 gi|320649703|gb|EFX18227.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str. H
          2687]
 gi|320655100|gb|EFX23061.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320660606|gb|EFX28067.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320665533|gb|EFX32579.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
          LSU-61]
 gi|323162057|gb|EFZ47929.1| DNA polymerase III subunit chi [Escherichia coli E128010]
 gi|323166622|gb|EFZ52381.1| DNA polymerase III subunit chi [Shigella sonnei 53G]
 gi|323176173|gb|EFZ61765.1| DNA polymerase III subunit chi [Escherichia coli 1180]
 gi|323181992|gb|EFZ67403.1| DNA polymerase III subunit chi [Escherichia coli 1357]
 gi|323189860|gb|EFZ75138.1| DNA polymerase III subunit chi [Escherichia coli RN587/1]
 gi|323380354|gb|ADX52622.1| DNA-directed DNA polymerase [Escherichia coli KO11]
 gi|323935381|gb|EGB31729.1| DNA polymerase III chi [Escherichia coli E1520]
 gi|323940177|gb|EGB36371.1| DNA polymerase III chi subunit protein [Escherichia coli E482]
 gi|323945992|gb|EGB42030.1| DNA polymerase III chi [Escherichia coli H120]
 gi|323950672|gb|EGB46550.1| DNA polymerase III chi subunit protein [Escherichia coli H252]
 gi|323955545|gb|EGB51309.1| DNA polymerase III chi subunit protein [Escherichia coli H263]
 gi|323960300|gb|EGB55941.1| DNA polymerase III chi subunit protein [Escherichia coli H489]
 gi|324005160|gb|EGB74379.1| DNA polymerase III subunit chi [Escherichia coli MS 57-2]
 gi|324013723|gb|EGB82942.1| DNA polymerase III subunit chi [Escherichia coli MS 60-1]
 gi|324112117|gb|EGC06095.1| DNA polymerase III chi subunit protein [Escherichia fergusonii
          B253]
 gi|326345408|gb|EGD69151.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str.
          1125]
 gi|326346736|gb|EGD70470.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str.
          1044]
 gi|331040786|gb|EGI12944.1| DNA polymerase III subunit chi [Escherichia coli M605]
 gi|331046447|gb|EGI18537.1| DNA polymerase III subunit chi [Escherichia coli M718]
 gi|331051882|gb|EGI23921.1| DNA polymerase III subunit chi [Escherichia coli TA206]
 gi|331061756|gb|EGI33682.1| DNA polymerase III subunit chi [Escherichia coli TA271]
 gi|332083259|gb|EGI88490.1| DNA polymerase III subunit chi [Shigella boydii 5216-82]
 gi|332083710|gb|EGI88928.1| DNA polymerase III subunit chi [Shigella dysenteriae 155-74]
 gi|332087007|gb|EGI92141.1| DNA polymerase III subunit chi [Shigella boydii 3594-74]
 gi|332346337|gb|AEE59671.1| DNA polymerase III subunit [Escherichia coli UMNK88]
 gi|333010225|gb|EGK29658.1| DNA polymerase III subunit chi [Shigella flexneri VA-6]
 gi|333011248|gb|EGK30662.1| DNA polymerase III subunit chi [Shigella flexneri K-272]
 gi|333012145|gb|EGK31527.1| DNA polymerase III subunit chi [Shigella flexneri K-227]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|309792900|ref|ZP_07687328.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7]
 gi|308123186|gb|EFO60448.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7]
 gi|323965648|gb|EGB61102.1| DNA polymerase III chi subunit protein [Escherichia coli M863]
 gi|327250204|gb|EGE61923.1| DNA polymerase III subunit chi [Escherichia coli STEC_7v]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|295097700|emb|CBK86790.1| DNA polymerase III, chi subunit [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 PESFVPHNL 69


>gi|320184515|gb|EFW59317.1| DNA polymerase III chi subunit [Shigella flexneri CDC 796-83]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSTVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|167835787|ref|ZP_02462670.1| DNA polymerase III subunit chi [Burkholderia thailandensis MSMB43]
          Length = 138

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           LL+  Y+ G+ V V     R+R +L+E LWT+    F+PH      +   ++  P++LT 
Sbjct: 20  LLRKAYQAGRPVVVCAEPARLR-ALDERLWTFSPLDFIPH---CAVDNAHAAGTPIVLTA 75

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII-NTDDQGSLEWGRAHWRSLKNSGYA 137
               A    I  L++  +        +E+++ ++ NT D+  L  GR  +R  ++ GYA
Sbjct: 76  DLDRAPHHGI--LLNLGAQVPAQFARFERLLEVVGNTPDE--LAAGRDRYRFYRDRGYA 130


>gi|193063698|ref|ZP_03044786.1| DNA polymerase III, chi subunit [Escherichia coli E22]
 gi|256019910|ref|ZP_05433775.1| DNA polymerase III subunit chi [Shigella sp. D9]
 gi|293476562|ref|ZP_06664970.1| DNA polymerase III subunit chi [Escherichia coli B088]
 gi|300818516|ref|ZP_07098725.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1]
 gi|300821366|ref|ZP_07101514.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7]
 gi|300916354|ref|ZP_07133097.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1]
 gi|307312966|ref|ZP_07592594.1| DNA-directed DNA polymerase [Escherichia coli W]
 gi|331645008|ref|ZP_08346125.1| DNA polymerase III subunit chi [Escherichia coli H736]
 gi|331680397|ref|ZP_08381056.1| DNA polymerase III subunit chi [Escherichia coli H591]
 gi|332281051|ref|ZP_08393464.1| DNA polymerase III subunit chi [Shigella sp. D9]
 gi|192930685|gb|EDV83291.1| DNA polymerase III, chi subunit [Escherichia coli E22]
 gi|291321015|gb|EFE60457.1| DNA polymerase III subunit chi [Escherichia coli B088]
 gi|300416333|gb|EFJ99643.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1]
 gi|300526255|gb|EFK47324.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7]
 gi|300528920|gb|EFK49982.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1]
 gi|306907134|gb|EFN37641.1| DNA-directed DNA polymerase [Escherichia coli W]
 gi|315063566|gb|ADT77893.1| DNA polymerase III, chi subunit [Escherichia coli W]
 gi|320200611|gb|EFW75197.1| DNA polymerase III chi subunit [Escherichia coli EC4100B]
 gi|324019267|gb|EGB88486.1| DNA polymerase III subunit chi [Escherichia coli MS 117-3]
 gi|324118820|gb|EGC12712.1| DNA polymerase III chi subunit protein [Escherichia coli E1167]
 gi|331035983|gb|EGI08221.1| DNA polymerase III subunit chi [Escherichia coli H736]
 gi|331071860|gb|EGI43196.1| DNA polymerase III subunit chi [Escherichia coli H591]
 gi|332103403|gb|EGJ06749.1| DNA polymerase III subunit chi [Shigella sp. D9]
          Length = 160

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|325499817|gb|EGC97676.1| DNA polymerase III subunit chi [Escherichia fergusonii ECD227]
          Length = 160

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|161505036|ref|YP_001572148.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866383|gb|ABX23006.1| hypothetical protein SARI_03167 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYILDNDTAVDGLSAVEQLVCDIAAERWRSGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|281603542|gb|ADA76526.1| DNA polymerase III, chi subunit [Shigella flexneri 2002017]
          Length = 160

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|194437758|ref|ZP_03069853.1| DNA polymerase III, chi subunit [Escherichia coli 101-1]
 gi|256025195|ref|ZP_05439060.1| DNA polymerase III subunit chi [Escherichia sp. 4_1_40B]
 gi|260858411|ref|YP_003232302.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str.
          11368]
 gi|301329235|ref|ZP_07222216.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1]
 gi|194423254|gb|EDX39246.1| DNA polymerase III, chi subunit [Escherichia coli 101-1]
 gi|257757060|dbj|BAI28562.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str.
          11368]
 gi|300844443|gb|EFK72203.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1]
 gi|323157533|gb|EFZ43642.1| DNA polymerase III subunit chi [Escherichia coli EPECa14]
 gi|323970487|gb|EGB65746.1| DNA polymerase III chi subunit protein [Escherichia coli TA007]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|16132081|ref|NP_418680.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12
          substr. MG1655]
 gi|89110975|ref|AP_004755.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12
          substr. W3110]
 gi|170083698|ref|YP_001733018.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12
          substr. DH10B]
 gi|238903360|ref|YP_002929156.1| DNA polymerase III, chi subunit [Escherichia coli BW2952]
 gi|123454|sp|P28905|HOLC_ECOLI RecName: Full=DNA polymerase III subunit chi
 gi|34810156|pdb|1EM8|A Chain A, Crystal Structure Of Chi And Psi Subunit Heterodimer
          From Dna Pol Iii
 gi|34810158|pdb|1EM8|C Chain C, Crystal Structure Of Chi And Psi Subunit Heterodimer
          From Dna Pol Iii
 gi|41740|emb|CAA78524.1| DNA polymerase III holoenzyme chi subunit [Escherichia coli]
 gi|145537|gb|AAA70368.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|537101|gb|AAA97156.1| DNA polymerase III chi subunit [Escherichia coli str. K-12
          substr. MG1655]
 gi|1790709|gb|AAC77216.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12
          substr. MG1655]
 gi|85677006|dbj|BAE78256.1| DNA polymerase III, chi subunit [Escherichia coli str. K12
          substr. W3110]
 gi|169891533|gb|ACB05240.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12
          substr. DH10B]
 gi|238860832|gb|ACR62830.1| DNA polymerase III, chi subunit [Escherichia coli BW2952]
 gi|260450921|gb|ACX41343.1| DNA-directed DNA polymerase [Escherichia coli DH1]
 gi|315138810|dbj|BAJ45969.1| DNA polymerase III subunit chi [Escherichia coli DH1]
 gi|742337|prf||2009369A DNA polymerase III:SUBUNIT=chi
          Length = 147

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|170683022|ref|YP_001746662.1| DNA polymerase III subunit chi [Escherichia coli SMS-3-5]
 gi|293407979|ref|ZP_06651819.1| DNA polymerase III subunit chi [Escherichia coli B354]
 gi|300935930|ref|ZP_07150884.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1]
 gi|301024408|ref|ZP_07188094.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1]
 gi|331665928|ref|ZP_08366822.1| DNA polymerase III subunit chi [Escherichia coli TA143]
 gi|331671400|ref|ZP_08372198.1| DNA polymerase III subunit chi [Escherichia coli TA280]
 gi|331681279|ref|ZP_08381916.1| DNA polymerase III subunit chi [Escherichia coli H299]
 gi|170520740|gb|ACB18918.1| DNA polymerase III, chi subunit [Escherichia coli SMS-3-5]
 gi|291472230|gb|EFF14712.1| DNA polymerase III subunit chi [Escherichia coli B354]
 gi|300396603|gb|EFJ80141.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1]
 gi|300458898|gb|EFK22391.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1]
 gi|331056979|gb|EGI28973.1| DNA polymerase III subunit chi [Escherichia coli TA143]
 gi|331071245|gb|EGI42602.1| DNA polymerase III subunit chi [Escherichia coli TA280]
 gi|331081500|gb|EGI52661.1| DNA polymerase III subunit chi [Escherichia coli H299]
          Length = 160

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 14 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 74 AESFVPHNL 82


>gi|322834558|ref|YP_004214585.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
 gi|321169759|gb|ADW75458.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
          Length = 161

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 19  VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
           ++  + Y  GKRV + C  ++  + L+E LW  + + F+PH +  G+   F +  PV L 
Sbjct: 27  LVAAERYRMGKRVLLACEDQKQAERLDEALWQREPNHFVPHNL-AGEGPRFGA--PVELC 83

Query: 79  ISSLNANTST---IRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                 N      I  L + A        ++E V F+   D    L   R  +++ ++ G
Sbjct: 84  WPGKRGNAPRDLLISLLPEFADFATA---FHEVVDFVPYEDSLKQL--ARERYKAYRSVG 138

Query: 136 YA 137
           ++
Sbjct: 139 FS 140


>gi|330873096|gb|EGH07245.1| DNA polymerase III subunit chi [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963187|gb|EGH63447.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 142

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G +V + C     R+ L+  LW ++ + FLPHG D   + D     PV+L  
Sbjct: 24  LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-DAESDHD----APVVL-- 76

Query: 80  SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
             L  ++ T + L+    + I      + +V  ++  D    L   R  +RS +  GY P
Sbjct: 77  -GLGDDSGTHQDLLVNLDLSIPAFFTRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134


>gi|254037281|ref|ZP_04871358.1| DNA polymerase III [Escherichia sp. 1_1_43]
 gi|226840387|gb|EEH72389.1| DNA polymerase III [Escherichia sp. 1_1_43]
          Length = 147

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLNAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 AESFVPHNL 69


>gi|289811597|ref|ZP_06542226.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 142

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 6  FYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
          FY   ND   N L  ++        + +  GKRV + C  E+    L+E LW    + F+
Sbjct: 1  FYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARPAESFV 60

Query: 58 PHGV 61
          PH +
Sbjct: 61 PHNL 64


>gi|195432683|ref|XP_002064346.1| GK19748 [Drosophila willistoni]
 gi|194160431|gb|EDW75332.1| GK19748 [Drosophila willistoni]
          Length = 824

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           +E+ R SL + L +WK D  L  G  +VG    F ++Q + LT+++L   T  +R
Sbjct: 95  TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLFDAYQQICLTLNALKLGTQFLR 149


>gi|195567038|ref|XP_002107082.1| GD17262 [Drosophila simulans]
 gi|194204479|gb|EDX18055.1| GD17262 [Drosophila simulans]
          Length = 204

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           +E+ R SL + L +WK D  L  G  +VG    + ++Q + LT+++L  +T  +R
Sbjct: 95  TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149


>gi|237799871|ref|ZP_04588332.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022726|gb|EGI02783.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 142

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G +V + C +   R  L+  LW +K + FLPHG D   + D +        +
Sbjct: 24  LTEKAWRLGHKVYLHCSNAAQRTDLDARLWRFKGEVFLPHG-DAESDHDAA-------VV 75

Query: 80  SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
             L  ++ T + L+    ++I    + + +V  ++  D    L   R  +RS +  GY P
Sbjct: 76  LGLGDDSGTHQDLLINLDLNIPAFFNRFARVAEVVVEDPAIRLA-ARESFRSYRERGYPP 134


>gi|227328318|ref|ZP_03832342.1| peptidase, M16 family protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 904

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNAN----TSTIRFLVDEASMHIGDVDYYEKVVF 111
           FL HGVD  DE    + + V +T  S  AN    ++ I  L+  + + +GD D Y +++ 
Sbjct: 351 FLSHGVD--DE----TLELVKITALSSFANAHKTSAPIAGLLSNSHVLLGDADRYRQIIA 404

Query: 112 IINTDDQGSLEWGRAHW 128
           II   D  S+     HW
Sbjct: 405 IIKQADVDSVRQAAQHW 421


>gi|161729084|ref|NP_221220.2| DNA polymerase III subunit chi [Rickettsia prowazekii str. Madrid
           E]
 gi|292572538|gb|ADE30453.1| DNA polymerase III chi subunit HolC [Rickettsia prowazekii Rp22]
          Length = 154

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-H 99
           ++ LN+ LWT+ +  F+PHG     +    + QP+ +T    N N +++  ++    +  
Sbjct: 42  QEMLNKNLWTYSRKQFIPHGSKFDPQ---PAKQPIYITDELQNPNNASVLVIISPTDIAK 98

Query: 100 IGDVDYYEKVV--FIINTD 116
           I  V  Y KV    II TD
Sbjct: 99  ILQVKEYIKVFKRIIIITD 117


>gi|253991459|ref|YP_003042815.1| DNA polymerase III subunit chi [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782909|emb|CAQ86074.1| dna polymerase iii, chi subunit [Photorhabdus asymbiotica]
          Length = 158

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 23 DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          D++  GKRV + C  ++  + L+E LW  +   F+PH +
Sbjct: 40 DQWRAGKRVLIACEDQQQAEKLDEALWQREPHQFVPHNL 78


>gi|53718608|ref|YP_107594.1| DNA polymerase III subunit chi [Burkholderia pseudomallei K96243]
 gi|76810735|ref|YP_332588.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1710b]
 gi|126440549|ref|YP_001058066.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 668]
 gi|126454054|ref|YP_001065303.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1106a]
 gi|134281095|ref|ZP_01767804.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305]
 gi|167718525|ref|ZP_02401761.1| DNA polymerase III subunit chi [Burkholderia pseudomallei DM98]
 gi|167737557|ref|ZP_02410331.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 14]
 gi|167814691|ref|ZP_02446371.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 91]
 gi|167823145|ref|ZP_02454616.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 9]
 gi|167844709|ref|ZP_02470217.1| DNA polymerase III subunit chi [Burkholderia pseudomallei B7210]
 gi|167893244|ref|ZP_02480646.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 7894]
 gi|167901701|ref|ZP_02488906.1| DNA polymerase III subunit chi [Burkholderia pseudomallei NCTC
          13177]
 gi|167909940|ref|ZP_02497031.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 112]
 gi|167917977|ref|ZP_02505068.1| DNA polymerase III subunit chi [Burkholderia pseudomallei BCC215]
 gi|217419436|ref|ZP_03450942.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576]
 gi|226194392|ref|ZP_03789990.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei
          Pakistan 9]
 gi|237811283|ref|YP_002895734.1| DNA polymerase III subunit chi [Burkholderia pseudomallei
          MSHR346]
 gi|242315240|ref|ZP_04814256.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b]
 gi|254181438|ref|ZP_04888035.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655]
 gi|254190837|ref|ZP_04897344.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254196190|ref|ZP_04902614.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13]
 gi|254261707|ref|ZP_04952761.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a]
 gi|52209022|emb|CAH34962.1| putative DNA polymerase III chi subunit [Burkholderia
          pseudomallei K96243]
 gi|76580188|gb|ABA49663.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710b]
 gi|126220042|gb|ABN83548.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 668]
 gi|126227696|gb|ABN91236.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106a]
 gi|134247401|gb|EBA47486.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305]
 gi|157938512|gb|EDO94182.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei
          Pasteur 52237]
 gi|169652933|gb|EDS85626.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13]
 gi|184211976|gb|EDU09019.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655]
 gi|217396740|gb|EEC36756.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576]
 gi|225933477|gb|EEH29466.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei
          Pakistan 9]
 gi|237504050|gb|ACQ96368.1| DNA polymerase III subunit chi [Burkholderia pseudomallei
          MSHR346]
 gi|242138479|gb|EES24881.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b]
 gi|254220396|gb|EET09780.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a]
          Length = 138

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
          LL+  Y+ G+ V V     R+R +L+E LWT+    F+PH      +   ++  P++LT
Sbjct: 20 LLRKAYQAGQPVVVCAEPARLR-ALDERLWTFSPLDFIPH---CAIDNAHAASTPIVLT 74


>gi|6831725|sp|Q9ZC94|Y872_RICPR RecName: Full=Uncharacterized protein RP872
 gi|3861397|emb|CAA15296.1| unknown [Rickettsia prowazekii]
          Length = 165

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM-H 99
           ++ LN+ LWT+ +  F+PHG     +    + QP+ +T    N N +++  ++    +  
Sbjct: 53  QEMLNKNLWTYSRKQFIPHGSKFDPQ---PAKQPIYITDELQNPNNASVLVIISPTDIAK 109

Query: 100 IGDVDYYEKVV--FIINTD 116
           I  V  Y KV    II TD
Sbjct: 110 ILQVKEYIKVFKRIIIITD 128


>gi|83721052|ref|YP_441380.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264]
 gi|167618245|ref|ZP_02386876.1| DNA polymerase III subunit chi [Burkholderia thailandensis Bt4]
 gi|257139947|ref|ZP_05588209.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264]
 gi|83654877|gb|ABC38940.1| DNA polymerase III, chi subunit, putative [Burkholderia
          thailandensis E264]
          Length = 138

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
          LL+  Y+ G+ V V     R+R +L+E LWT+    F+PH      +   ++  P++LT
Sbjct: 20 LLRKAYQAGQPVVVCAEPARLR-ALDERLWTFSPLDFIPH---CAVDNAHAASTPIVLT 74


>gi|320329801|gb|EFW85789.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330874248|gb|EGH08397.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 142

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G +V + C     R+ L+  LW ++ + FLPHG     + +  S  PV+L  
Sbjct: 24  LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-----DAESDSNAPVVL-- 76

Query: 80  SSLNANTSTIRFLVDEASMHIGD-VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
             L  ++     L+    + I      + +V  ++  D    L   R  +RS +  GY P
Sbjct: 77  -GLGDDSGAHEDLLVNLDLSIPTFFKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134


>gi|145629512|ref|ZP_01785310.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21]
 gi|145639006|ref|ZP_01794614.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII]
 gi|144978355|gb|EDJ88119.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21]
 gi|145271978|gb|EDK11887.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII]
 gi|309750966|gb|ADO80950.1| DNA polymerase III, chi subunit [Haemophilus influenzae R2866]
          Length = 144

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GK+V + C SE     ++E LW    + F+PH +     G+ + + P  + IS L  
Sbjct: 30  WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84

Query: 85  NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                R ++      I D  + + +++  +  DD    +  R  ++ L+  G+
Sbjct: 85  RNLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRQQGW 136


>gi|77361340|ref|YP_340915.1| DNA polymerase III subunit chi [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76876251|emb|CAI87473.1| DNA polymerase III, chi subunit [Pseudoalteromonas haloplanktis
          TAC125]
          Length = 148

 Score = 34.7 bits (78), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          +  D+Y  G+RV +   +E    +++E LW +  D F+PH +
Sbjct: 30 IAADQYRLGQRVFICVDNENTAFAIDETLWAFDPDSFVPHNL 71


>gi|149927921|ref|ZP_01916171.1| DNA polymerase III subunit chi [Limnobacter sp. MED105]
 gi|149823360|gb|EDM82593.1| DNA polymerase III subunit chi [Limnobacter sp. MED105]
          Length = 140

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L++  Y  G ++        V ++L++ LWT+ ++ FLPH V  G  G   +  P++LT 
Sbjct: 20  LIRKAYGSGLKIVCYSTRPEVLENLDKLLWTFSEEDFLPHVVS-GHPG--VADTPIVLTD 76

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
            + +     +   +DE          +E++V I+ TD+       R  ++  K  GY 
Sbjct: 77  KADDIAHYDLLINLDEQWPPF--FARFERLVEIVGTDEDNK-ALARQRYKFYKERGYP 131


>gi|307824331|ref|ZP_07654557.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum
           SV96]
 gi|307734711|gb|EFO05562.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum
           SV96]
          Length = 160

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS--------- 70
           L++  Y  G    V   S     ++++ LWT++   F+PH +  G+  D +         
Sbjct: 24  LIEKAYRSGSFCYVLTDSAEQSRTIDDLLWTFRAGSFIPHQIYTGEPPDIARDGVYAAGS 83

Query: 71  -----SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGR 125
                + + V+L I SL+A     + L + +S +       E+++ I++ + + + E GR
Sbjct: 84  PGASAATEKVIL-IGSLDAPEHWQKVLFNLSSRYPDVGPQTERILEILD-NSETTKEAGR 141

Query: 126 AHWRSLKNSG 135
             +R  + SG
Sbjct: 142 NRYRRYQQSG 151


>gi|71734138|ref|YP_273423.1| DNA polymerase III subunit chi [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554691|gb|AAZ33902.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330890528|gb|EGH23189.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. mori str.
           301020]
          Length = 142

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G +V + C     R+ L+  LW ++ + FLPHG     + +  S  PV+L +
Sbjct: 24  LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-----DAESDSDAPVVLGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
              +     +   +D +         + +V  ++  D    L   R  +RS +  GY P
Sbjct: 79  GDDSGAHEDLLVNLDLSIPAF--FKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134


>gi|170723399|ref|YP_001751087.1| DNA polymerase III subunit chi [Pseudomonas putida W619]
 gi|169761402|gb|ACA74718.1| DNA-directed DNA polymerase [Pseudomonas putida W619]
          Length = 142

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G RV + C     R  L++ LW +K + F+PH        D +         
Sbjct: 24  LCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAFVPH--------DLAEAHADATVA 75

Query: 80  SSLNANTSTIR-FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
             L  N    R  L++  +   G V  +E+V  I+  +     +  R  +R  +  GYA
Sbjct: 76  LGLADNAGEHRDLLINLGADVPGFVGQFERVAEIV-VEQADIRQSARERFRFYREQGYA 133


>gi|126208969|ref|YP_001054194.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          L20]
 gi|126097761|gb|ABN74589.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
          Length = 145

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 1  MRTLLFYRFKNDWEYNLLV-------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
          M+ + FY        NL         L  + +  GKRV + C +E+   +++E LW    
Sbjct: 1  MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60

Query: 54 DGFLPHGV 61
          D F+PH +
Sbjct: 61 DSFVPHNL 68


>gi|67459767|ref|YP_247391.1| DNA polymerase III subunit chi [Rickettsia felis URRWXCal2]
 gi|67005300|gb|AAY62226.1| unknown [Rickettsia felis URRWXCal2]
          Length = 154

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI 100
           ++ LN+ LWT+ +  F+PHG  +  + +    QP+ +T    N N +++  ++  +   I
Sbjct: 42  QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII--SPTDI 96

Query: 101 GDV 103
           G +
Sbjct: 97  GKI 99


>gi|320322890|gb|EFW78981.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 142

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 20  LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L +  +  G +V + C     R+ L+  LW ++ + FLPHG     + +  S  PV+L +
Sbjct: 24  LTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVFLPHG-----DAESDSDAPVVLGL 78

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
              +     +   +D +         + +V  ++  D    L   R  +RS +  GY P
Sbjct: 79  GDDSGAHEDLLVNLDLSIPTF--FKRFARVAEVVVEDPAIRLA-ARESFRSYREQGYPP 134


>gi|165976934|ref|YP_001652527.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|190150834|ref|YP_001969359.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|303253014|ref|ZP_07339168.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|307248547|ref|ZP_07530563.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|307264184|ref|ZP_07545776.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|165877035|gb|ABY70083.1| DNA polymerase III chi subunit [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|189915965|gb|ACE62217.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|302648146|gb|EFL78348.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|306854942|gb|EFM87129.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|306870475|gb|EFN02227.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 145

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 1  MRTLLFYRFKNDWEYNLLV-------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
          M+ + FY        NL         L  + +  GKRV + C +E+   +++E LW    
Sbjct: 1  MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60

Query: 54 DGFLPHGV 61
          D F+PH +
Sbjct: 61 DSFVPHNL 68


>gi|157829183|ref|YP_001495425.1| DNA polymerase III subunit chi [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165933911|ref|YP_001650700.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. Iowa]
 gi|157801664|gb|ABV76917.1| DNA polymerase III subunit chi [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165908998|gb|ABY73294.1| DNA polymerase III, chi subunit [Rickettsia rickettsii str. Iowa]
          Length = 154

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV 93
          ++ LN+ LWT+ +  F+PHG  +  + +    QP+ +T    N N +++  ++
Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII 91


>gi|71280374|ref|YP_267489.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H]
 gi|71146114|gb|AAZ26587.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H]
          Length = 157

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 13/82 (15%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG-----------VDVGDEGDFSSFQ 73
           Y + +RV +    ++  + ++E LW +  D F+PH            V++G +      +
Sbjct: 38  YRQNQRVYIYAKDQQHAEQIDEMLWAFDSDSFVPHNLVGEGPKQGAMVEIGYQAP-QGRR 96

Query: 74  PVLLTISSLNAN-TSTIRFLVD 94
           PVL+ ++S   N  +  +F+VD
Sbjct: 97  PVLINLNSAVPNFANQFQFIVD 118


>gi|68250085|ref|YP_249197.1| DNA polymerase III subunit chi [Haemophilus influenzae 86-028NP]
 gi|145632853|ref|ZP_01788586.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655]
 gi|229846748|ref|ZP_04466855.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1]
 gi|68058284|gb|AAX88537.1| DNA polymerase III, chi subunit [Haemophilus influenzae 86-028NP]
 gi|144986509|gb|EDJ93075.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655]
 gi|229810237|gb|EEP45956.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1]
          Length = 144

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GK+V + C SE     ++E LW    + F+PH +     G+ + + P  + IS L  
Sbjct: 30  WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84

Query: 85  NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                R L+      I D  + + +++  +  DD    +  R  ++ L+  G+
Sbjct: 85  RNLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136


>gi|229844141|ref|ZP_04464282.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1]
 gi|229813135|gb|EEP48823.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1]
          Length = 144

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GK+V + C SE     ++E LW    + F+PH +     G+ + + P  + IS L  
Sbjct: 30  WHSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84

Query: 85  NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                R L+      I D  + + +++  +  DD    +  R  ++ L+  G+
Sbjct: 85  RNLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136


>gi|157965013|ref|YP_001499837.1| DNA polymerase III subunit chi [Rickettsia massiliae MTU5]
 gi|157844789|gb|ABV85290.1| DNA polymerase III chi subunit HolC [Rickettsia massiliae MTU5]
          Length = 156

 Score = 34.3 bits (77), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV 93
          ++ LN+ LWT+ +  F+PHG  +  + +    QP+ +T    N N +++  ++
Sbjct: 44 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII 93


>gi|16273306|ref|NP_439550.1| DNA polymerase III subunit chi [Haemophilus influenzae Rd KW20]
 gi|260580767|ref|ZP_05848593.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae
           RdAW]
 gi|1170335|sp|P43749|HOLC_HAEIN RecName: Full=DNA polymerase III subunit chi
 gi|1574233|gb|AAC23044.1| DNA polymerase III, chi subunit (holC) [Haemophilus influenzae Rd
           KW20]
 gi|260092584|gb|EEW76521.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae
           RdAW]
          Length = 144

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GK+V + C SE     ++E LW    + F+PH +     G+ + + P  + IS L  
Sbjct: 30  WRSGKKVLISCESEAQALEIDERLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84

Query: 85  NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                R L+      I D  + + +++  +  DD    +  R  ++ L+  G+
Sbjct: 85  RNLQRRDLLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136


>gi|15893269|ref|NP_360983.1| DNA polymerase III subunit chi [Rickettsia conorii str. Malish 7]
 gi|34581064|ref|ZP_00142544.1| hypothetical protein [Rickettsia sibirica 246]
 gi|229587243|ref|YP_002845744.1| DNA polymerase III subunit chi [Rickettsia africae ESF-5]
 gi|238651118|ref|YP_002916976.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic]
 gi|15620489|gb|AAL03884.1| unknown [Rickettsia conorii str. Malish 7]
 gi|28262449|gb|EAA25953.1| unknown [Rickettsia sibirica 246]
 gi|228022293|gb|ACP54001.1| DNA polymerase III chi subunit HolC [Rickettsia africae ESF-5]
 gi|238625216|gb|ACR47922.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic]
          Length = 154

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 41 RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV 93
          ++ LN+ LWT+ +  F+PHG  +  + +    QP+ +T    N N +++  ++
Sbjct: 42 QEMLNKNLWTYSRKQFIPHGSKLDPQPE---KQPIYITDELQNPNNASVLVII 91


>gi|194894024|ref|XP_001977991.1| GG17939 [Drosophila erecta]
 gi|190649640|gb|EDV46918.1| GG17939 [Drosophila erecta]
          Length = 816

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           +E+ R SL + L +WK D  L  G  +VG    + ++Q + LT+++L  +T  +R
Sbjct: 95  TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149


>gi|51474041|ref|YP_067798.1| DNA polymerase III subunit chi [Rickettsia typhi str. Wilmington]
 gi|51460353|gb|AAU04316.1| probable DNA-directed DNA polymerase III chi subunit HolC
           [Rickettsia typhi str. Wilmington]
          Length = 154

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMH- 99
           ++ LN+ LWT+ +  F+PHG     +    + QP+ +T    N N +++  ++    +  
Sbjct: 42  QEMLNKNLWTYSRKQFIPHGSKFDPQ---PTKQPIYITDELQNPNNASVLIIISPTDIEK 98

Query: 100 IGDVDYYEKVV--FIINTD 116
           I  V  Y +V    II TD
Sbjct: 99  ILQVKEYIRVFKRIIIITD 117


>gi|18859957|ref|NP_573099.1| CG8939 [Drosophila melanogaster]
 gi|7293173|gb|AAF48557.1| CG8939 [Drosophila melanogaster]
 gi|17862372|gb|AAL39663.1| LD23718p [Drosophila melanogaster]
 gi|220944838|gb|ACL84962.1| CG8939-PA [synthetic construct]
          Length = 817

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           +E+ R SL + L +WK D  L  G  +VG    + ++Q + LT+++L  +T  +R
Sbjct: 95  TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149


>gi|195357054|ref|XP_002044929.1| GM11680 [Drosophila sechellia]
 gi|194124271|gb|EDW46314.1| GM11680 [Drosophila sechellia]
          Length = 817

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           +E+ R SL + L +WK D  L  G  +VG    + ++Q + LT+++L  +T  +R
Sbjct: 95  TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLR 149


>gi|32034863|ref|ZP_00134969.1| COG2927: DNA polymerase III, chi subunit [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
          Length = 123

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
          L  + +  GKRV + C +E+   +++E LW    D F+PH +
Sbjct: 5  LAANAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNL 46


>gi|319897049|ref|YP_004135244.1| DNA polymerase iii, chi subunit [Haemophilus influenzae F3031]
 gi|329123469|ref|ZP_08252033.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius
           ATCC 11116]
 gi|317432553|emb|CBY80913.1| DNA polymerase III, chi subunit [Haemophilus influenzae F3031]
 gi|327471051|gb|EGF16506.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius
           ATCC 11116]
          Length = 144

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GK+V + C SE     ++E LW    + F+PH +     G+ + + P  + IS L  
Sbjct: 30  WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84

Query: 85  NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
                R ++      I D  + + +++  +  DD    +  R  ++ L+  G+A
Sbjct: 85  RNLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDDALKTQ-ARERYKQLRALGWA 137


>gi|195133724|ref|XP_002011289.1| GI16447 [Drosophila mojavensis]
 gi|193907264|gb|EDW06131.1| GI16447 [Drosophila mojavensis]
          Length = 826

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGV-DVGDEGDFSSFQPVLLTISSLNANTSTIR 90
           +E+ R SL + L +WK D  L  G  +VG    + ++Q + LT+++L   T  +R
Sbjct: 95  TEKCRQSLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLGTQFLR 149


>gi|315617672|gb|EFU98278.1| DNA polymerase III subunit chi [Escherichia coli 3431]
          Length = 147

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLVLLQ--------DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND   + L  ++        + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAYRLDEALWARP 60

Query: 53 KDGFLPHGV 61
           + F+PH +
Sbjct: 61 VESFVPHNL 69


>gi|148826880|ref|YP_001291633.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG]
 gi|148718122|gb|ABQ99249.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG]
          Length = 144

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GK+V + C SE     ++E LW    + F+PH +     G+ + + P  + IS L  
Sbjct: 30  WRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNLS----GEATQY-PTPIEISWLGK 84

Query: 85  NTSTIRFLVDEASMHIGDVDY-YEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
                R ++      I D  + + +++  +  DD    +  R  ++ L+  G+
Sbjct: 85  RNLQRRDMLINLQQEIPDFSHSFTQIIDFVPKDDALKTQ-ARERYKQLRLQGW 136


Searching..................................................done


Results from round 2




>gi|260426697|ref|ZP_05780676.1| DNA polymerase III subunit chi [Citreicella sp. SE45]
 gi|260421189|gb|EEX14440.1| DNA polymerase III subunit chi [Citreicella sp. SE45]
          Length = 152

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL+     G RV V+  S    D L++ LW   ++GFLPH
Sbjct: 1   MGAAYFYHLTQRPLEATLPVLLEKSLSAGWRVVVRGTSPGRMDWLDQRLWLGPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  +   N ++    VD A +   +V   E+V  + +  D  
Sbjct: 61  GLS---GGPHDALQPVLLTTGAAMPNDASCLMAVDGAEVSPEEVGKLERVCILFDGHDHE 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  WR+L  +G A  
Sbjct: 118 ALQAARGQWRALTGAGCAAQ 137


>gi|241203952|ref|YP_002975048.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857842|gb|ACS55509.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 149

 Score =  203 bits (517), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+++LWT++++ FLPH
Sbjct: 1   MTDVLFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPAD--AYERIVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ LK  G+ 
Sbjct: 116 QLEAARAQWKKLKGEGHN 133


>gi|327188013|gb|EGE55243.1| DNA polymerase III subunit chi [Rhizobium etli CNPAF512]
          Length = 149

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT+++D FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ LK  G+ 
Sbjct: 116 QLEAARAQWKRLKGEGHN 133


>gi|116251338|ref|YP_767176.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255986|emb|CAK07067.1| putative DNA polymerase III subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 149

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  L+    E+G RV+VQ      RD+L+++LWT++++ FLPH
Sbjct: 1   MTDVLFYHLTESRLEDALPPLIDKSVERGWRVAVQTREPARRDALDQHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTPDNANAATVRFIVDGAEPPPAD--AYERIVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L+  RA W+ LK  G+ 
Sbjct: 116 QLDTARAQWKKLKGEGHN 133


>gi|227821478|ref|YP_002825448.1| DNA polymerase III subunit chi [Sinorhizobium fredii NGR234]
 gi|227340477|gb|ACP24695.1| DNA polymerase III, chi subunit protein [Sinorhizobium fredii
           NGR234]
          Length = 149

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTADAERRDALDTHLWIYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D G+F++ QP+L+     N N +T+RFLVD A      +  YE+VVF+ +  DQ 
Sbjct: 61  GT---DAGEFAAEQPILIVAGDGNQNGATVRFLVDGAEPPP--LSDYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  R  W+ LK  G+
Sbjct: 116 QLESARGQWKRLKGEGH 132


>gi|190891139|ref|YP_001977681.1| DNA polymerase III protein, chi subunit [Rhizobium etli CIAT 652]
 gi|190696418|gb|ACE90503.1| probable DNA polymerase III protein, chi subunit [Rhizobium etli
           CIAT 652]
          Length = 149

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ LK  G+ 
Sbjct: 116 QLEAARAQWKRLKGEGHN 133


>gi|209548674|ref|YP_002280591.1| DNA polymerase III subunit chi [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534430|gb|ACI54365.1| DNA polymerase III chi subunit HolC [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 149

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDVLFYHLTETKLEDALPPLIDKSVERGWRVAVQTREAARRDALDAHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DEGDF+  QPVLLT++S NAN +T+RF++D A      +D YE+VVF+ +  DQ 
Sbjct: 61  GT---DEGDFAENQPVLLTVTSGNANAATVRFIIDGAEPPP--LDAYERVVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ LK  G+ 
Sbjct: 116 QLEAARAQWKKLKGEGHN 133


>gi|218459999|ref|ZP_03500090.1| DNA polymerase III subunit chi [Rhizobium etli Kim 5]
          Length = 149

 Score =  201 bits (511), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETKLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTFREETFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAENQPVLLTVTPDNANAATVRFIVDGAEPPPAD--SYERIVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ LK  G+ 
Sbjct: 116 QLEAARAQWKRLKGEGHN 133


>gi|86357095|ref|YP_468987.1| DNA polymerase III subunit chi [Rhizobium etli CFN 42]
 gi|86281197|gb|ABC90260.1| putative DNA polymerase III, chi subunit protein [Rhizobium etli
           CFN 42]
          Length = 149

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL    E+G RV VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLLDKSIERGWRVVVQTSEAARRDALDAHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D  DF+  QPVLLT++S NAN +T+RF+VD A     D   YE+VVF+ +  DQ 
Sbjct: 61  GT---DTADFAENQPVLLTVTSDNANAATVRFIVDGAEPPPAD--AYERVVFMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ L+  G+ 
Sbjct: 116 QLEAARAQWKKLRGEGHN 133


>gi|218509824|ref|ZP_03507702.1| DNA polymerase III subunit chi [Rhizobium etli Brasil 5]
          Length = 149

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/138 (43%), Positives = 82/138 (59%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT+++D FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A     D   YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YERIVFMFDGHDQA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W  LK  G+ 
Sbjct: 116 QLEAARAQWNRLKGEGHN 133


>gi|325292489|ref|YP_004278353.1| DNA polymerase III chi subunit [Agrobacterium sp. H13-3]
 gi|325060342|gb|ADY64033.1| putative DNA polymerase III chi subunit [Agrobacterium sp. H13-3]
          Length = 149

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   E+G +V++Q   E  RD L+ +LWT++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDEERRDFLDTHLWTFRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             D          QP+LLT S+ N N +++RFLVD A      V+ YE++VF+ +  D  
Sbjct: 61  ATDTSA---APQNQPILLTASNANGNEASVRFLVDGAE--PPAVEGYERIVFMFDGYDAY 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R HW+ LK  G+A
Sbjct: 116 QLEMARNHWKRLKTEGHA 133


>gi|260433489|ref|ZP_05787460.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417317|gb|EEX10576.1| DNA polymerase III subunit chi [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 153

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   ++  E+ L VLL    + G R++V+       D L+E LW   ++ FLPH
Sbjct: 1   MGAVYFYHLTRHPLEHTLPVLLDKARQAGWRIAVRGTDPARMDWLDERLWLGPEESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G   + QP+LLT     AN       VD A +   +V   E+V  + + +D  
Sbjct: 61  GRA---GGPHDAMQPILLTTGPEAANDPACLMAVDGAEVAADEVTALERVCILFDGNDPQ 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  W++L  +G A  
Sbjct: 118 ALDHARGQWKALTAAGCAAQ 137


>gi|159184617|ref|NP_354131.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58]
 gi|159139915|gb|AAK86916.2| DNA polymerase III subunit chi [Agrobacterium tumefaciens str. C58]
          Length = 149

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   E+G +V++Q   +  RD L+ +LWT++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLEKSLERGWKVAIQTVDDERRDFLDTHLWTFRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             D          QP+LLT SS N N + +RFLVD A      V+ YE+VVF+ +  D  
Sbjct: 61  ATDASS---APQNQPILLTASSENGNAANVRFLVDGAEPLA--VETYERVVFMFDGYDAY 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R HW++LK  G++
Sbjct: 116 QLEMARNHWKTLKAEGHS 133


>gi|150395991|ref|YP_001326458.1| DNA polymerase III subunit chi [Sinorhizobium medicae WSM419]
 gi|150027506|gb|ABR59623.1| DNA polymerase III chi subunit HolC [Sinorhizobium medicae WSM419]
          Length = 149

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEVLFYHLTESKLEDALPPLLDKSIERGWRVVVQTVDAERRDALDTHLWVYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D GDF++ QP+L+     N N +T+RFLVD A      V  YE+VVF+ +  DQ 
Sbjct: 61  GT---DAGDFATEQPILVVADHGNQNAATVRFLVDGAEPPP--VSDYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L+  R  W+ LK  G+ 
Sbjct: 116 QLDAARDQWKRLKGEGHN 133


>gi|307317714|ref|ZP_07597152.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83]
 gi|306896476|gb|EFN27224.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti AK83]
          Length = 149

 Score =  197 bits (501), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D G+F++ QP+L+     N N +T+RF+VD A      V  YE+VVF+ +  DQ 
Sbjct: 61  GT---DAGEFAAEQPILVVADDGNRNAATVRFVVDGAEPPP--VSEYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R  W+ LK  G+ 
Sbjct: 116 QLEAARDQWKRLKGEGHN 133


>gi|15964909|ref|NP_385262.1| DNA polymerase III subunit chi [Sinorhizobium meliloti 1021]
 gi|307300979|ref|ZP_07580748.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C]
 gi|15074088|emb|CAC45735.1| Putative DNA polymerase III chi subunit [Sinorhizobium meliloti
           1021]
 gi|306903934|gb|EFN34520.1| DNA polymerase III chi subunit HolC [Sinorhizobium meliloti BL225C]
          Length = 149

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL    E+G RV VQ      RD+L+ +LW ++ D FLPH
Sbjct: 1   MTEILFYHLTESKLEDALPPLLDKSIERGWRVVVQTIDAERRDALDTHLWVYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D G+F++ QP+L+     N N +T+RF+VD A      V  YE+VVF+ +  DQ 
Sbjct: 61  GT---DAGEFAAVQPILVVADDGNRNAATVRFVVDGAEPPP--VSEYERVVFMFDGYDQQ 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R  W+ LK  G+ 
Sbjct: 116 QLEAARDQWKRLKGEGHN 133


>gi|222085456|ref|YP_002543986.1| DNA polymerase III [Agrobacterium radiobacter K84]
 gi|221722904|gb|ACM26060.1| DNA polymerase III [Agrobacterium radiobacter K84]
          Length = 149

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  L+    E+G +V++Q   +  RD+L+ +LWT+++D FLPH
Sbjct: 1   MTDVLFYHLTESKLEDALPPLIDKSVERGWQVAIQTREQARRDALDTHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE + +  QPVLLT+S  N N +++RF +D A     D+D Y++VVFI +  DQ 
Sbjct: 61  GT---DESEMADRQPVLLTVSPDNLNNASVRFFIDGAE--ASDIDTYQRVVFIFDGYDQE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ LK  G+ 
Sbjct: 116 QLEGARAQWKKLKGEGHN 133


>gi|56697303|ref|YP_167669.1| DNA polymerase III subunit chi [Ruegeria pomeroyi DSS-3]
 gi|56679040|gb|AAV95706.1| DNA polymerase III, chi subunit, putative [Ruegeria pomeroyi DSS-3]
          Length = 154

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +N  E  L VLL      G RV+V+         L+E LW    DGFLPH
Sbjct: 1   MGAAYFYHLTRNPLEATLPVLLTKALGAGWRVAVRGSDPGRLVWLDEKLWLGPDDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  +   N +     VD A++   +V   E+V  + +  D  
Sbjct: 61  GLA---GGAHDADQPVLLTTGADAPNGARCVMSVDGAAVTPEEVAALERVCILFDGTDPA 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           ++E  R  WR+L  +G A  
Sbjct: 118 AVEAARGQWRALTAAGCAAQ 137


>gi|220925407|ref|YP_002500709.1| DNA polymerase III subunit chi HolC [Methylobacterium nodulans ORS
           2060]
 gi|219950014|gb|ACL60406.1| DNA polymerase III chi subunit HolC [Methylobacterium nodulans ORS
           2060]
          Length = 150

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+  RV++Q  SE    +L+++LWT+  + FLPH
Sbjct: 1   MTEILFYHMQRQPLESVLPSLLEKSLERRWRVAIQATSEERLQALDDHLWTFSDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D     + QPV+LT+   N N ++IRFLVD A +   D   Y ++  + +  DQ 
Sbjct: 61  GT---DREPDPATQPVVLTLREANPNGASIRFLVDGAPL-PEDAGSYARICILFDGTDQD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L + R  WR+ K +G++
Sbjct: 117 ALLFAREQWRAAKGAGHS 134


>gi|209885472|ref|YP_002289329.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5]
 gi|209873668|gb|ACI93464.1| DNA polymerase III subunit chi [Oligotropha carboxidovorans OM5]
          Length = 154

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 81/138 (58%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  ++   E  L  L++   E+G RV VQ GSE   ++L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQDMRLEAVLPPLIEKSLERGWRVVVQAGSEERAEALDSHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +   ++ QPV+LT+   N N +T+RFLVD A++   D   Y+++V I + DD G
Sbjct: 61  GTWRESD---AAEQPVVLTVRDDNPNDATVRFLVDGATV-PEDCTAYQRIVLIFDGDDDG 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L+  RA W   K  GY 
Sbjct: 117 ALQAARAAWTDCKARGYE 134


>gi|149201831|ref|ZP_01878805.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035]
 gi|149144879|gb|EDM32908.1| DNA polymerase III subunit chi [Roseovarius sp. TM1035]
          Length = 152

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L +LL+     G RV V+         L+E LW   +DGFLPH
Sbjct: 1   MGAVYFYHLTRQPLEATLPMLLEKSLGAGWRVVVRGREAARLVWLDERLWLGPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           GV     G   + QPVLLT      N +     +D A +   +V   ++V  + + +D  
Sbjct: 61  GVA---GGAHDADQPVLLTTDHARPNGAACVMAIDGADVSGEEVQSLQRVCILFDGNDDA 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W++L  +G A  
Sbjct: 118 AVQVARGQWKALTGAGCAAQ 137


>gi|254510554|ref|ZP_05122621.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11]
 gi|221534265|gb|EEE37253.1| DNA polymerase III subunit chi [Rhodobacteraceae bacterium KLH11]
          Length = 152

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L VLL    + G R++V+       D L+E LW   ++GFLPH
Sbjct: 1   MGAVYFYHLTRQPLERTLPVLLDKARQAGWRIAVRGTDPARMDWLDEKLWLGPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G   + QPVLLT     AN++     VD A +   +V   E+V  + +  D  
Sbjct: 61  GRA---GGPHDAAQPVLLTTGPEAANSAACVMAVDGAPVEADEVTALERVCILFDGTDPD 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W++L  +G +  
Sbjct: 118 AVQRARGQWKALTGAGCSAQ 137


>gi|259419117|ref|ZP_05743034.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B]
 gi|259345339|gb|EEW57193.1| DNA polymerase III subunit chi [Silicibacter sp. TrichCH4B]
          Length = 154

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   +  L VLL      G R++V+         L++ LW      FLPH
Sbjct: 1   MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLGGDATFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G     QP+LLT S+   N +T    VD A +   +V   E+V  + +  D  
Sbjct: 61  GLA---GGPHDKLQPILLTTSADAPNDATCVMSVDGAEVTPEEVSALERVCILFDGTDPD 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W++L  +G A  
Sbjct: 118 AVQQARGQWKALTAAGCAAQ 137


>gi|154253773|ref|YP_001414597.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans
           DS-1]
 gi|154157723|gb|ABS64940.1| DNA polymerase III chi subunit HolC [Parvibaculum lavamentivorans
           DS-1]
          Length = 149

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   E+G R  V+ G     D+LN  LWT+  D FLPH
Sbjct: 1   MTEVLFYHLQNAPLEQVLPQLLERSLERGWRAIVRAGGPERLDALNNVLWTYSDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +   ++ +PV LT+   N N + + FLVD A+   G++  YE+ V + +  D+ 
Sbjct: 61  GTL---DDGPAALEPVFLTVDDENPNNANVLFLVDGAA--PGNIGPYERCVLMFDGRDEA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L   R HW++LK  G+
Sbjct: 116 ALAAAREHWKTLKAEGH 132


>gi|170743501|ref|YP_001772156.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46]
 gi|168197775|gb|ACA19722.1| DNA polymerase III chi subunit HolC [Methylobacterium sp. 4-46]
          Length = 150

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+  RV VQ  SE    +L+++LWT+ ++ FLPH
Sbjct: 1   MTEILFYHMQRQPLESVLPNLLEKSLERRWRVVVQAASEERLAALDDHLWTFSEESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D    +  QPV+LT+   N N +TIRFLV+ A++   D   YE++  + +  DQ 
Sbjct: 61  GT---DREPDAGTQPVVLTLRDANPNGATIRFLVEGAAL-PADAGRYERICVLFDGSDQE 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR+ K +G++
Sbjct: 117 ALLLAREQWRAAKEAGHS 134


>gi|158422164|ref|YP_001523456.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571]
 gi|158329053|dbj|BAF86538.1| DNA polymerase III chi subunit [Azorhizobium caulinodans ORS 571]
          Length = 149

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L VLL+   E+G R  VQ GS   RD+L+ +LWT+    FLPH
Sbjct: 1   MTEVLFYHLERRPLEDALPVLLEKSLERGWRCVVQAGSPERRDALDAHLWTYNDASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D          QPVLLT+   N N + +RFLVD A   I D   Y +VV + +  D+ 
Sbjct: 61  GTDAQPR---PERQPVLLTLDEANPNDAQVRFLVDGA--RIADASPYVRVVHMFDGRDET 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  WR  K +G+ 
Sbjct: 116 AVAAARERWREAKAAGHT 133


>gi|149914660|ref|ZP_01903190.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b]
 gi|149811453|gb|EDM71288.1| DNA polymerase III subunit chi [Roseobacter sp. AzwK-3b]
          Length = 152

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   ++  E  L +LL   ++ G RV V+       + L+E LW   ++GFLPH
Sbjct: 1   MGAAFFYHLTRHPLETTLPMLLGKAHQAGWRVIVRGHDPVRIEWLDERLWLGPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+         + QPVLLT+S    N +     VD A +   +V   E+V  + +  D  
Sbjct: 61  GLAGR---PHEADQPVLLTVSEEIPNGALCLMAVDGAEVAPDEVSRLERVCILFDGHDDA 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  W++L ++G A  
Sbjct: 118 ALQKARGQWKALTSAGCAAQ 137


>gi|239831523|ref|ZP_04679852.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301]
 gi|239823790|gb|EEQ95358.1| DNA polymerase III subunit chi [Ochrobactrum intermedium LMG 3301]
          Length = 149

 Score =  193 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV++Q  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLARGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT S  N N +T+RFLV+ A +   D   YE++V + +  DQ 
Sbjct: 61  GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLEQAD--AYERLVVMFDGHDQE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W+S K   +
Sbjct: 116 QLDIARGQWKSFKAENH 132


>gi|99080792|ref|YP_612946.1| DNA polymerase III subunit chi [Ruegeria sp. TM1040]
 gi|99037072|gb|ABF63684.1| DNA polymerase III chi subunit HolC [Ruegeria sp. TM1040]
          Length = 154

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   +  L VLL      G R++V+         L++ LW      FLPH
Sbjct: 1   MGAAYFYHLTRKPLQETLPVLLDKARGAGWRIAVRGRDPERLAWLDDTLWLAGDASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LLT +S  AN +     VD A +   +VD  E+V  + +  D  
Sbjct: 61  GIA---GGPHDALQPILLTTASEAANGADCVMSVDGAEVQPDEVDALERVCILFDGTDPE 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W++L  +G    
Sbjct: 118 AVQHARGQWKNLTAAGCLAQ 137


>gi|39936122|ref|NP_948398.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris CGA009]
 gi|192291840|ref|YP_001992445.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris TIE-1]
 gi|39649976|emb|CAE28500.1| hypothetical protein RPA3059 [Rhodopseudomonas palustris CGA009]
 gi|192285589|gb|ACF01970.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris
           TIE-1]
          Length = 150

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDSHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   ++ QP+LLT    N N + +RFLVD A++   D   YE++V + N DD  
Sbjct: 61  ATWRVAD---AAHQPILLTTGEGNPNGAKVRFLVDNAAL-PEDSGSYERMVLLFNGDDDE 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W+  K   + 
Sbjct: 117 AVAMARDAWKQCKAKAFE 134


>gi|163854052|ref|YP_001642095.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens
           PA1]
 gi|218532995|ref|YP_002423811.1| DNA polymerase III chi subunit HolC [Methylobacterium
           chloromethanicum CM4]
 gi|254564020|ref|YP_003071115.1| hypothetical protein METDI5706 [Methylobacterium extorquens DM4]
 gi|163665657|gb|ABY33024.1| DNA polymerase III chi subunit HolC [Methylobacterium extorquens
           PA1]
 gi|218525298|gb|ACK85883.1| DNA polymerase III chi subunit HolC [Methylobacterium
           chloromethanicum CM4]
 gi|254271298|emb|CAX27310.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 150

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L++   E+G + ++Q  SE    +L++ LWT+  + FLPH
Sbjct: 1   MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D    ++ QPV+LT+   N N ++IRFLV+ A +   D + Y+++  + +  D  
Sbjct: 61  GT---DRDTDAASQPVVLTLRETNPNGASIRFLVEGAEL-PEDAESYQRICILFDGTDTD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR  K +G+A
Sbjct: 117 ALLHAREQWRGAKAAGHA 134


>gi|240141506|ref|YP_002965986.1| hypothetical protein MexAM1_META1p5105 [Methylobacterium extorquens
           AM1]
 gi|240011483|gb|ACS42709.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 150

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L++   E+G + ++Q  SE    +L++ LWT+  + FLPH
Sbjct: 1   MTEILFYHLQRQPLEKVLPSLVEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D    ++ QPV+LT+   N N ++IRFLV+ A +   D + Y+++  + +  D  
Sbjct: 61  GT---DRDTDAARQPVVLTLRETNPNGASIRFLVEGAEL-PEDAESYQRICILFDGTDTD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR  K +G+A
Sbjct: 117 ALLHAREQWRGAKAAGHA 134


>gi|85706344|ref|ZP_01037438.1| DNA polymerase III subunit chi [Roseovarius sp. 217]
 gi|85669117|gb|EAQ23984.1| DNA polymerase III subunit chi [Roseovarius sp. 217]
          Length = 152

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L +LL+     G RV V+         L+E LW   +DGFLPH
Sbjct: 1   MGAAYFYHLTRQPLEATLPMLLEKSLSVGWRVVVRGRDRARMVWLDERLWLGPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  S   N +     +D A +   +V   ++V  + + +D  
Sbjct: 61  GLS---GGPQDADQPVLLTTESARPNGAVCLMAIDAAEVSAQEVQMLDRVCILFDGNDDA 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W++L  +G    
Sbjct: 118 AVQAARGQWKTLTGAGCTAQ 137


>gi|260466944|ref|ZP_05813126.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum
           WSM2075]
 gi|259029241|gb|EEW30535.1| DNA polymerase III chi subunit HolC [Mesorhizobium opportunistum
           WSM2075]
          Length = 149

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   ++G R  VQ G++  RD+L+++LWT++ D FL H
Sbjct: 1   MAEVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTDERRDALDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                D   +   QPVLLT    N N + IRFLVD A+    D+  YE+ VF+ +  D  
Sbjct: 61  AT---DREAYPGEQPVLLTTGDGNPNEAKIRFLVDGAA--PPDLSGYERAVFLFDGHDAA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            ++  RAHW+++K++G++
Sbjct: 116 QVDAARAHWKTMKDAGHS 133


>gi|110634106|ref|YP_674314.1| DNA polymerase III subunit chi [Mesorhizobium sp. BNC1]
 gi|110285090|gb|ABG63149.1| DNA polymerase III, chi subunit [Chelativorans sp. BNC1]
          Length = 172

 Score =  192 bits (488), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 6/135 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            +LFY   ++  E  L  L++   E+G RV +Q  SE  RD+L+  LWT++ D F+PH  
Sbjct: 17  EVLFYHLTESTLEEALPPLVEKSLERGWRVGIQTASEERRDALDACLWTFRDDSFVPHAT 76

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
              D    ++ QPV+LT +  N N ++IRFLV+ A    G +D Y++ VF+ +  D   L
Sbjct: 77  ---DREPHAAEQPVILTTAPANPNGASIRFLVEGAE--PGSLDGYQRAVFLFDGHDTSQL 131

Query: 122 EWGRAHWRSLKNSGY 136
           +  RAHW+++K +G+
Sbjct: 132 DAARAHWKAMKAAGH 146


>gi|319784421|ref|YP_004143897.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170309|gb|ADV13847.1| DNA polymerase III chi subunit HolC [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 149

 Score =  192 bits (488), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   ++G R  VQ G+E  RD+L+++LWT++ D FL H
Sbjct: 1   MADVLFYHLTESTLEDALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                D       QP+LLT    N N + IRFLVD A     D+  YE+ VF+ +  D  
Sbjct: 61  AT---DREAHPGEQPILLTTGDGNPNDAKIRFLVDGA--VPPDLGGYERAVFLFDGHDAA 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            LE  R HW+ +K++G+
Sbjct: 116 QLEAARGHWKVMKSAGH 132


>gi|306838748|ref|ZP_07471582.1| DNA polymerase III subunit chi [Brucella sp. NF 2653]
 gi|306842044|ref|ZP_07474717.1| DNA polymerase III subunit chi [Brucella sp. BO2]
 gi|306287885|gb|EFM59305.1| DNA polymerase III subunit chi [Brucella sp. BO2]
 gi|306406150|gb|EFM62395.1| DNA polymerase III subunit chi [Brucella sp. NF 2653]
          Length = 165

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 17  MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT +  N N +T+RFLV+ A +       YE++V + +  DQ 
Sbjct: 77  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 131

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W++ K   +
Sbjct: 132 QLDIARTQWKAFKAENH 148


>gi|17987543|ref|NP_540177.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str. 16M]
 gi|237815141|ref|ZP_04594139.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A]
 gi|17983245|gb|AAL52441.1| DNA polymerase iii, chi subunit [Brucella melitensis bv. 1 str.
           16M]
 gi|237789978|gb|EEP64188.1| DNA polymerase III subunit chi [Brucella abortus str. 2308 A]
          Length = 165

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 17  MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 76

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT +  N N +T+RFLV+ A +       YE++V + +  DQ 
Sbjct: 77  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 131

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W++ K   +
Sbjct: 132 QLDIARTQWKAFKAENH 148


>gi|13476528|ref|NP_108098.1| DNA polymerase III subunit chi [Mesorhizobium loti MAFF303099]
 gi|14027289|dbj|BAB54243.1| mlr7869 [Mesorhizobium loti MAFF303099]
          Length = 149

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   ++G R  VQ G+E  RD+L+++LWT++ D FL H
Sbjct: 1   MADVLFYHLTESTLEEALPGLLERSVDRGWRAVVQTGTEERRDALDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                D   +   QP+LLT S  N N + IRFLVD A     D+  YE+ VF+ +  D  
Sbjct: 61  AT---DREAYPDEQPILLTTSDGNPNEAKIRFLVDGA--VPSDLAGYERAVFLFDGHDAA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            +E  R HW+++K++G+A
Sbjct: 116 QVEAARGHWKTMKDAGHA 133


>gi|188584381|ref|YP_001927826.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001]
 gi|179347879|gb|ACB83291.1| DNA polymerase III chi subunit HolC [Methylobacterium populi BJ001]
          Length = 150

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+G + ++Q  SE    +L++ LWT+  + FLPH
Sbjct: 1   MTEILFYHLQRQPLEKVLPNLLEKSLERGWQAAIQAVSEERLQALDDGLWTYTDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D    ++ QPV+LT+   N N ++IRFLV+ A +   D   Y+++  + +  D  
Sbjct: 61  GT---DRDTDAASQPVVLTLRETNPNAASIRFLVEGAEL-PEDAGSYQRICILFDGTDTD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR  K +G+A
Sbjct: 117 ALLHAREQWRGAKAAGHA 134


>gi|170749513|ref|YP_001755773.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656035|gb|ACB25090.1| DNA polymerase III chi subunit HolC [Methylobacterium radiotolerans
           JCM 2831]
          Length = 150

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L++   ++G + ++Q  SE    +L+++LWT+  + FLPH
Sbjct: 1   MTEILFYHMQRQPLEKVLPNLVERSLDRGWQAAIQAASEERLQALDDHLWTYSDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D    ++ QPV+LT+  +N NT++IRFLV+ A +   D   YE++  + +  DQ 
Sbjct: 61  GT---DREPDAASQPVVLTLRDVNPNTASIRFLVEGADL-PPDAGQYERICILFDGTDQD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  W+  K++G+A
Sbjct: 117 ALLRAREQWKQAKDAGHA 134


>gi|299133715|ref|ZP_07026909.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2]
 gi|298591551|gb|EFI51752.1| DNA polymerase III chi subunit HolC [Afipia sp. 1NLS2]
          Length = 155

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  ++   E  L  LL+   E+G RV VQ GSE   D L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQDMKLENVLPPLLEKSLERGWRVVVQVGSEERADMLDSHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +   ++ +PV+LT+S  N N +++ FLVD A + I D   Y++VV I N DD  
Sbjct: 61  GTWREAD---AASEPVVLTVSDANPNGASVCFLVDGAPVPI-DCSAYQRVVLIFNGDDDE 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   RA W   K  G+ 
Sbjct: 117 ALGAARAAWTDCKARGFE 134


>gi|225627187|ref|ZP_03785225.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo]
 gi|225618022|gb|EEH15066.1| DNA polymerase III subunit chi [Brucella ceti str. Cudo]
          Length = 165

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+LN  LWT+    F+ H
Sbjct: 17  MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 76

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT +  N N +T+RFLV+ A +       YE++V + +  DQ 
Sbjct: 77  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 131

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W++ K   +
Sbjct: 132 QLDIARTQWKAFKAENH 148


>gi|114766155|ref|ZP_01445159.1| DNA polymerase III subunit chi [Pelagibaca bermudensis HTCC2601]
 gi|114541615|gb|EAU44657.1| DNA polymerase III subunit chi [Roseovarius sp. HTCC2601]
          Length = 152

 Score =  191 bits (486), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L +LL+     G RV+V+       D L++ LW   +DGFLPH
Sbjct: 1   MGAAYFYHLTQRPLEATLPLLLEKSLAAGWRVAVRGTDPGRIDWLDQRLWMGPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G   + QPVLLT+     N       VD A +   +V+  E+V  + +  D  
Sbjct: 61  G---QAGGKHDALQPVLLTVQEALPNDPACLMAVDGAGVAPEEVNRLERVCILFDGHDGM 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  WR+L  +G    
Sbjct: 118 ALDAARGQWRALTGAGCKAQ 137


>gi|153009926|ref|YP_001371141.1| DNA polymerase III subunit chi [Ochrobactrum anthropi ATCC 49188]
 gi|151561814|gb|ABS15312.1| DNA polymerase III chi subunit HolC [Ochrobactrum anthropi ATCC
           49188]
          Length = 149

 Score =  191 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV++Q  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTIQTVSEERRDALDGLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT S  N N +T+RFLV+ A +   D   YE++V + +  DQ 
Sbjct: 61  GT---DKEPHPEHQPVLLTTSEANPNGATVRFLVEGAGLEQAD--AYERLVVMFDGHDQD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W++ K   +
Sbjct: 116 QLDIARGQWKNFKAGSH 132


>gi|23501577|ref|NP_697704.1| DNA polymerase III subunit chi [Brucella suis 1330]
 gi|62289652|ref|YP_221445.1| DNA polymerase III subunit chi [Brucella abortus bv. 1 str. 9-941]
 gi|82699579|ref|YP_414153.1| DNA polymerase III subunit chi [Brucella melitensis biovar Abortus
           2308]
 gi|148559893|ref|YP_001258671.1| DNA polymerase III subunit chi [Brucella ovis ATCC 25840]
 gi|161618659|ref|YP_001592546.1| DNA polymerase III subunit chi [Brucella canis ATCC 23365]
 gi|163842960|ref|YP_001627364.1| DNA polymerase III subunit chi [Brucella suis ATCC 23445]
 gi|189023901|ref|YP_001934669.1| DNA polymerase III subunit chi [Brucella abortus S19]
 gi|225852210|ref|YP_002732443.1| DNA polymerase III subunit chi [Brucella melitensis ATCC 23457]
 gi|254688961|ref|ZP_05152215.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870]
 gi|254693443|ref|ZP_05155271.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya]
 gi|254697096|ref|ZP_05158924.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701473|ref|ZP_05163301.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513]
 gi|254704020|ref|ZP_05165848.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686]
 gi|254707607|ref|ZP_05169435.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10]
 gi|254709811|ref|ZP_05171622.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94]
 gi|254718825|ref|ZP_05180636.1| DNA polymerase III subunit chi [Brucella sp. 83/13]
 gi|254729991|ref|ZP_05188569.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292]
 gi|256031302|ref|ZP_05444916.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1]
 gi|256044382|ref|ZP_05447286.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060815|ref|ZP_05450975.1| DNA polymerase III subunit chi [Brucella neotomae 5K33]
 gi|256113225|ref|ZP_05454093.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str.
           Ether]
 gi|256257210|ref|ZP_05462746.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68]
 gi|256264282|ref|ZP_05466814.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369124|ref|YP_003106632.1| DNA polymerase III subunit chi [Brucella microti CCM 4915]
 gi|260545597|ref|ZP_05821338.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038]
 gi|260563734|ref|ZP_05834220.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M]
 gi|260566732|ref|ZP_05837202.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40]
 gi|260754451|ref|ZP_05866799.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870]
 gi|260757670|ref|ZP_05870018.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292]
 gi|260761497|ref|ZP_05873840.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883480|ref|ZP_05895094.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68]
 gi|261213697|ref|ZP_05927978.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya]
 gi|261315096|ref|ZP_05954293.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10]
 gi|261317349|ref|ZP_05956546.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94]
 gi|261324807|ref|ZP_05964004.1| DNA polymerase III subunit chi [Brucella neotomae 5K33]
 gi|261752016|ref|ZP_05995725.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513]
 gi|261754675|ref|ZP_05998384.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686]
 gi|265983811|ref|ZP_06096546.1| DNA polymerase III subunit chi [Brucella sp. 83/13]
 gi|265988387|ref|ZP_06100944.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1]
 gi|265990801|ref|ZP_06103358.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994637|ref|ZP_06107194.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str.
           Ether]
 gi|294852052|ref|ZP_06792725.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026]
 gi|297248059|ref|ZP_06931777.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196]
 gi|306845290|ref|ZP_07477866.1| DNA polymerase III subunit chi [Brucella sp. BO1]
 gi|23347490|gb|AAN29619.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62195784|gb|AAX74084.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615680|emb|CAJ10667.1| DNA polymerase III chi subunit, HolC [Brucella melitensis biovar
           Abortus 2308]
 gi|148371150|gb|ABQ61129.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|161335470|gb|ABX61775.1| DNA polymerase III chi subunit HolC [Brucella canis ATCC 23365]
 gi|163673683|gb|ABY37794.1| DNA polymerase III chi subunit HolC [Brucella suis ATCC 23445]
 gi|189019473|gb|ACD72195.1| DNA polymerase III chi subunit, HolC [Brucella abortus S19]
 gi|225640575|gb|ACO00489.1| DNA polymerase III chi subunit HolC [Brucella melitensis ATCC
           23457]
 gi|255999284|gb|ACU47683.1| DNA polymerase III subunit chi [Brucella microti CCM 4915]
 gi|260097004|gb|EEW80879.1| DNA polymerase III chi subunit [Brucella abortus NCTC 8038]
 gi|260153750|gb|EEW88842.1| DNA polymerase III chi subunit [Brucella melitensis bv. 1 str. 16M]
 gi|260156250|gb|EEW91330.1| DNA polymerase III chi subunit [Brucella suis bv. 4 str. 40]
 gi|260667988|gb|EEX54928.1| DNA polymerase III subunit chi [Brucella abortus bv. 4 str. 292]
 gi|260671929|gb|EEX58750.1| DNA polymerase III subunit chi [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674559|gb|EEX61380.1| DNA polymerase III subunit chi [Brucella abortus bv. 6 str. 870]
 gi|260873008|gb|EEX80077.1| DNA polymerase III subunit chi [Brucella abortus bv. 9 str. C68]
 gi|260915304|gb|EEX82165.1| DNA polymerase III subunit chi [Brucella abortus bv. 3 str. Tulya]
 gi|261296572|gb|EEY00069.1| DNA polymerase III subunit chi [Brucella pinnipedialis B2/94]
 gi|261300787|gb|EEY04284.1| DNA polymerase III subunit chi [Brucella neotomae 5K33]
 gi|261304122|gb|EEY07619.1| DNA polymerase III subunit chi [Brucella pinnipedialis M163/99/10]
 gi|261741769|gb|EEY29695.1| DNA polymerase III subunit chi [Brucella suis bv. 5 str. 513]
 gi|261744428|gb|EEY32354.1| DNA polymerase III subunit chi [Brucella suis bv. 3 str. 686]
 gi|262765750|gb|EEZ11539.1| DNA polymerase III subunit chi [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001585|gb|EEZ14160.1| DNA polymerase III subunit chi [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094542|gb|EEZ18351.1| DNA polymerase III chi subunit [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660584|gb|EEZ30845.1| DNA polymerase III subunit chi [Brucella pinnipedialis M292/94/1]
 gi|264662403|gb|EEZ32664.1| DNA polymerase III subunit chi [Brucella sp. 83/13]
 gi|294820641|gb|EFG37640.1| DNA polymerase III subunit chi [Brucella sp. NVSL 07-0026]
 gi|297175228|gb|EFH34575.1| DNA polymerase III subunit chi [Brucella abortus bv. 5 str. B3196]
 gi|306274449|gb|EFM56256.1| DNA polymerase III subunit chi [Brucella sp. BO1]
 gi|326408709|gb|ADZ65774.1| DNA polymerase III chi subunit, HolC [Brucella melitensis M28]
 gi|326538433|gb|ADZ86648.1| DNA polymerase III chi subunit HolC [Brucella melitensis M5-90]
          Length = 149

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT +  N N +T+RFLV+ A +       YE++V + +  DQ 
Sbjct: 61  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W++ K   +
Sbjct: 116 QLDIARTQWKAFKAENH 132


>gi|298291098|ref|YP_003693037.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506]
 gi|296927609|gb|ADH88418.1| DNA polymerase III chi subunit HolC [Starkeya novella DSM 506]
          Length = 148

 Score =  190 bits (483), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY  ++   E  L  LL+   E+G R +VQ  S    ++L++ LWT+ +  FLPH
Sbjct: 1   MTEVFFYHLQSRPLEAALPQLLEKCLERGWRCTVQSSSPERIEALDQLLWTYDEASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D   +   S  QP+LLT S  N N +T+RF +D AS    D+  Y +V+ + + +D  
Sbjct: 61  GTDRQPD---SGRQPILLTTSESNPNGATVRFFIDSAS--APDLSPYARVIHLFDGNDSD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L+  R  WR  +++G+
Sbjct: 116 ALDHARTAWREARSAGH 132


>gi|256159415|ref|ZP_05457193.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1]
 gi|256254710|ref|ZP_05460246.1| DNA polymerase III subunit chi [Brucella ceti B1/94]
 gi|260168441|ref|ZP_05755252.1| DNA polymerase III subunit chi [Brucella sp. F5/99]
 gi|261221890|ref|ZP_05936171.1| DNA polymerase III subunit chi [Brucella ceti B1/94]
 gi|261757903|ref|ZP_06001612.1| DNA polymerase III chi subunit [Brucella sp. F5/99]
 gi|265997853|ref|ZP_06110410.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1]
 gi|260920474|gb|EEX87127.1| DNA polymerase III subunit chi [Brucella ceti B1/94]
 gi|261737887|gb|EEY25883.1| DNA polymerase III chi subunit [Brucella sp. F5/99]
 gi|262552321|gb|EEZ08311.1| DNA polymerase III subunit chi [Brucella ceti M490/95/1]
          Length = 149

 Score =  189 bits (481), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+LN  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALNSLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT +  N N +T+RFLV+ A +       YE++V + +  DQ 
Sbjct: 61  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W++ K   +
Sbjct: 116 QLDIARTQWKAFKAENH 132


>gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040068|gb|ACT56864.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 141

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG
Sbjct: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS
Sbjct: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120

Query: 121 LEWGRAHWRSLKNSGYAPDVI 141
           LEWGRAHWRSLKNSGYAPDVI
Sbjct: 121 LEWGRAHWRSLKNSGYAPDVI 141


>gi|86749602|ref|YP_486098.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris HaA2]
 gi|86572630|gb|ABD07187.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris HaA2]
          Length = 150

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ GSE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQAGSEERADTLDAHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   +  QP++LT    N N +T+RFL+D A++   D + YE++V + + DD+ 
Sbjct: 61  ATWRVAD---AMHQPIVLTAEESNPNAATVRFLLDNAAL-PADAEGYERMVLLFDGDDED 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W+  K+ G+ 
Sbjct: 117 AVGMARDMWKQSKSRGFE 134


>gi|254477359|ref|ZP_05090745.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11]
 gi|214031602|gb|EEB72437.1| DNA polymerase III chi subunit, HolC [Ruegeria sp. R11]
          Length = 154

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +      L VLL+     G R+ V+   +     L++ LW   +D FLPH
Sbjct: 1   MGAVYFYHLTRRPLAETLPVLLEKAMGAGWRIVVRGQDQERITWLDDRLWQGPEDRFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           GV     G     QPVLLT     A  +     VD A +   +V   E+V  + +  DQ 
Sbjct: 61  GVA---GGPRDHLQPVLLTTQPELAEGTHCLMAVDGADVTPAEVASLERVCILFDGTDQA 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           ++   R  W++L ++G A  
Sbjct: 118 AVARARTQWKTLTDAGCAAQ 137


>gi|83952303|ref|ZP_00961035.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM]
 gi|83837309|gb|EAP76606.1| DNA polymerase III subunit chi [Roseovarius nubinhibens ISM]
          Length = 151

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L +LL      G RV V+       D L++ LW    + FLPH
Sbjct: 1   MGAAYFYHLTRQPLEATLPMLLTKAMGAGWRVVVRGVEPGRMDWLDQKLWQG-GESFLPH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT +   AN       VD A +   +V   E+V  + + +D  
Sbjct: 60  GLA---GGAHDALQPVLLTTAMEAANDPQCLMAVDGAEVSAEEVQRLERVCVLFDGNDMA 116

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  W++L  +G +  
Sbjct: 117 ALDRARGQWKALTEAGCSAQ 136


>gi|316933710|ref|YP_004108692.1| DNA polymerase III subunit chi HolC [Rhodopseudomonas palustris
           DX-1]
 gi|315601424|gb|ADU43959.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris
           DX-1]
          Length = 150

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ  SE   D+L+ +LWT+++D FLPH
Sbjct: 1   MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDGHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   ++ QP+LLT    N N + +RFLVD A++   D D YE++V + N DD  
Sbjct: 61  ATWRVAD---AAQQPILLTAGDGNPNGAKVRFLVDNAAL-PEDSDSYERMVLLFNGDDDE 116

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++   R  W+  K   +
Sbjct: 117 AVAMARDAWKQCKARAF 133


>gi|154245406|ref|YP_001416364.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus
           Py2]
 gi|154159491|gb|ABS66707.1| DNA polymerase III chi subunit HolC [Xanthobacter autotrophicus
           Py2]
          Length = 153

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+G R  VQCGS   RD+L+ +LWT+ +  FLPH
Sbjct: 1   MTEILFYHLERRPLEQVLPTLLEKSLERGWRCVVQCGSAERRDALDAHLWTYNEASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +          QPVLL  +  N N + +RFLVD  ++ + D   Y +VV + +  D  
Sbjct: 61  GTEAQ---PVPERQPVLLATTEANPNGAQVRFLVD--AVPLADAAPYVRVVHLFDGRDDE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            +   R  WR  K +  A
Sbjct: 116 QVAAARERWREAKAAATA 133


>gi|254465585|ref|ZP_05078996.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium
           Y4I]
 gi|206686493|gb|EDZ46975.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium
           Y4I]
          Length = 152

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL      G R++V+         L++ LW   ++ F  H
Sbjct: 1   MGAAYFYHLTRRPLEETLPVLLDKARGAGWRIAVRGRDPERMAWLDDRLWQGPEESFPAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT     AN+      VD A++   +V    +V  + +  D  
Sbjct: 61  GLA---GGPHDALQPVLLTAGPEAANSPDCVMAVDGAAVTAEEVQALSRVCILFDGTDPE 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W+SL ++G +  
Sbjct: 118 AVQHARTQWKSLTDAGCSAQ 137


>gi|222148156|ref|YP_002549113.1| hypothetical protein Avi_1546 [Agrobacterium vitis S4]
 gi|221735144|gb|ACM36107.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 149

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  LL+   E+G +V V+       D L+++LWT++ D FL H
Sbjct: 1   MTEVLFYHLTETRLEDALPALLEKSVERGWKVGVEMRDPERCDRLDQHLWTFRDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+ +   G+ +  QP+LL +SS N N +T+RF +D A   +  V  Y+++VF+ +  DQG
Sbjct: 61  GISI---GEQAEAQPILLCLSSDNPNGATVRFYIDGAVPDLPLV--YDRIVFVFDGHDQG 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  R  W+ LK  G+A
Sbjct: 116 ELETARGEWKRLKGEGHA 133


>gi|254713815|ref|ZP_05175626.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1]
 gi|254717127|ref|ZP_05178938.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1]
 gi|261218942|ref|ZP_05933223.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1]
 gi|261321559|ref|ZP_05960756.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1]
 gi|260924031|gb|EEX90599.1| DNA polymerase III subunit chi [Brucella ceti M13/05/1]
 gi|261294249|gb|EEX97745.1| DNA polymerase III subunit chi [Brucella ceti M644/93/1]
          Length = 149

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  +  L  L++    +G RV+VQ  SE  RD+L+  LWT+    F+ H
Sbjct: 1   MAEILFYHLTESTLDEALPGLVERSLGRGWRVTVQTVSEERRDALDSLLWTFSDTSFVAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    D+      QPVLLT +  N N +T+RFLV+ A +       YE++V + +  DQ 
Sbjct: 61  GT---DKEPNPEHQPVLLTTTETNPNGATVRFLVEGAKL--EQAGDYERLVVMFDGHDQD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L+  R  W + K   +
Sbjct: 116 QLDIARTQWEAFKAENH 132


>gi|75675867|ref|YP_318288.1| DNA polymerase III subunit chi [Nitrobacter winogradskyi Nb-255]
 gi|74420737|gb|ABA04936.1| DNA polymerase III, chi subunit [Nitrobacter winogradskyi Nb-255]
          Length = 150

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+  +E+G R  V   SE   D+L+ +LW+++ D FLPH
Sbjct: 1   MTEVLFYHLQNMSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                ++   +  QP++LT+   N N +T+RFL+D A +   ++D YE++V I + DD  
Sbjct: 61  ATWRIED---AGEQPIVLTVDGRNPNRATVRFLIDNAPL-PENLDTYERLVLIFDGDDGA 116

Query: 120 SLEWGRAHWRSLKNSGYAP 138
           +L+  RA W   K+ G   
Sbjct: 117 ALDAARAIWTECKSRGCEA 135


>gi|86138695|ref|ZP_01057268.1| DNA polymerase III subunit chi [Roseobacter sp. MED193]
 gi|85824755|gb|EAQ44957.1| DNA polymerase III subunit chi [Roseobacter sp. MED193]
          Length = 152

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M +  FY   +   +  L VLLQ     G R++V+         L+E LW    D FL H
Sbjct: 1   MGSAYFYHLTQRPLQETLPVLLQKARGAGWRIAVRGQQADRMSWLDEVLWQGSADSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LLT +  +AN       VD A +   +V   E+V  + + +++ 
Sbjct: 61  GLA---GGPHDALQPILLTTTQDSANQPECLMTVDGAEVTAAEVQALERVCILFDGNNET 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R+ W+SL  +G +  
Sbjct: 118 ALQQARSQWKSLTGAGCSAQ 137


>gi|85716327|ref|ZP_01047300.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A]
 gi|85696843|gb|EAQ34728.1| DNA polymerase III subunit chi [Nitrobacter sp. Nb-311A]
          Length = 150

 Score =  186 bits (474), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+  +E+G R  V   SE   D+L+ +LW+++ D FLPH
Sbjct: 1   MTEVLFYHLQNTSLEKVLPPLLEKTFERGWRAVVHTTSEERADALDAHLWSYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                ++   +S QP++LT+   N N +T+RFL+D A +     D YE++V I + DD  
Sbjct: 61  ATWRIED---ASEQPIVLTVDGRNPNGATVRFLIDSAPL-PESPDTYERLVLIFDGDDSV 116

Query: 120 SLEWGRAHWRSLKNSGYAP 138
           +L+  RA W   K+ G+  
Sbjct: 117 ALDAARAVWTECKSRGFEA 135


>gi|27379220|ref|NP_770749.1| DNA polymerase III subunit chi [Bradyrhizobium japonicum USDA 110]
 gi|27352371|dbj|BAC49374.1| blr4109 [Bradyrhizobium japonicum USDA 110]
          Length = 150

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   E+G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMTVENVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                ++   ++ QP++L I   N N + +RFLVD A++   D   YE++V + N DD  
Sbjct: 61  ATWRVND---AADQPIVLAIEEDNPNGAHVRFLVDNAAL-PQDAQGYERMVLLFNGDDPD 116

Query: 120 SLEWGRAHWRSLKNSGY 136
           +L   R+ W   K  G+
Sbjct: 117 ALALARSAWTDCKARGF 133


>gi|90423818|ref|YP_532188.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB18]
 gi|90105832|gb|ABD87869.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB18]
          Length = 150

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   ++G RV VQ  +E   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMTVEKVLPSLLEKSLQRGWRVVVQATTEERADALDTHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   +S QP++LT    N N + +RFL+D A++   DV  Y+++V + N DD+ 
Sbjct: 61  ATWRVAD---ASQQPIVLTADEANPNGAKVRFLIDNAAL-PTDVALYDRLVLVFNGDDED 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           S+   RA W   K+ G+A
Sbjct: 117 SVVMARAAWTDSKSRGFA 134


>gi|146340306|ref|YP_001205354.1| DNA polymerase III subunit chi [Bradyrhizobium sp. ORS278]
 gi|146193112|emb|CAL77123.1| putative DNA polymerase III, chi subunit, HolC [Bradyrhizobium sp.
           ORS278]
          Length = 150

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  ++   E  L  LL+   E+G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQSMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +    + QP++L I   N N + +RFLVD A +   D   YE++V + N DD  
Sbjct: 61  ATWRVAD---VAEQPIVLAIEESNPNRANVRFLVDNAPL-PSDSQSYERMVLVFNGDDPD 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R+ W   KN G+ 
Sbjct: 117 ALAAARSAWTDCKNRGFE 134


>gi|91977432|ref|YP_570091.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB5]
 gi|91683888|gb|ABE40190.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB5]
          Length = 150

 Score =  184 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+    +G RV VQ GSE   ++L+ +LWT++ D FLPH
Sbjct: 1   MTDVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSGSEERTETLDAHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   ++ QP++LT    N N + +RFL+D  ++   D + YE++V + + DD  
Sbjct: 61  ATSRVAD---AAHQPIVLTAEEGNPNAAMVRFLLDNVAL-PADAESYERMVLLFDGDDDD 116

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++   R  W+  K+ G+
Sbjct: 117 AVAMARVAWKQSKSRGF 133


>gi|126728785|ref|ZP_01744600.1| DNA polymerase III subunit chi [Sagittula stellata E-37]
 gi|126710715|gb|EBA09766.1| DNA polymerase III subunit chi [Sagittula stellata E-37]
          Length = 152

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L +LL    E+G RV+V+       D L+  LW   ++GFLPH
Sbjct: 1   MGAVFFYHLTRQPVEVTLGMLLTKSLERGWRVAVRGTDPARLDWLDAKLWLEPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G F + QPVLLT +    N       +D A +   + D  E+V  + +  D  
Sbjct: 61  GLA---GGKFDAEQPVLLTTALEAPNEPACLIALDGAEIRPEETDALERVCILFDGGDGA 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W++L ++G    
Sbjct: 118 AVQAARGQWKALTSAGCKAQ 137


>gi|115525292|ref|YP_782203.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisA53]
 gi|115519239|gb|ABJ07223.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisA53]
          Length = 150

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L  LL+   ++G RV VQ  SE   D+L+ +LWT+++D FLPH
Sbjct: 1   MTEVLFYHLQGVTVEKVLPSLLEKSLQRGWRVVVQSTSEERTDALDTHLWTYREDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   ++ QP++L     N N +T+RFL+D A++   D+  Y+++V + N DD  
Sbjct: 61  ATWRVAD---AAQQPIVLVADEGNPNGATVRFLIDNAAL-PADIASYDRMVLVFNGDDDE 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   RA W + K  G+ 
Sbjct: 117 AIALARAAWTASKAKGFE 134


>gi|163759138|ref|ZP_02166224.1| putative DNA polymerase III, chi subunit protein [Hoeflea
           phototrophica DFL-43]
 gi|162283542|gb|EDQ33827.1| putative DNA polymerase III, chi subunit protein [Hoeflea
           phototrophica DFL-43]
          Length = 149

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+   E+G RVSV  GSE    +L+ +LWT++++ FLPH
Sbjct: 1   MAEILFYHLTESRLEDALPPLLEKSLERGWRVSVHLGSEERLAALDAHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G D+      +  QPVLLT+S   AN +T+RF+ D A +    +   E++V + +  DQ 
Sbjct: 61  GSDM---AAHADRQPVLLTLSQEAANAATVRFVADGADLPA--LAGVERLVLMFDGHDQD 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            LE  RA W+ LK+ G+ 
Sbjct: 116 QLEAARAQWKRLKSDGHE 133


>gi|209964868|ref|YP_002297783.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum
           centenum SW]
 gi|209958334|gb|ACI98970.1| DNA polymerase III, chi subunit, HolC, putative [Rhodospirillum
           centenum SW]
          Length = 149

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E +L  LL+   E+G R  V   SE   ++L ++LWTWK D FLPH
Sbjct: 1   MTDVRFYHLTRKTLEQSLPELLEKTLERGWRAVVLAASEERAEALAQHLWTWKPDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G          + QPV L+ +    N + + FLVD A         YE+V  + + +D  
Sbjct: 61  GTA---RDGHPARQPVFLSATDERPNDANVLFLVDGAET--ARAPEYERVCDLFDGNDPD 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   R  WR+ K +G+A
Sbjct: 116 ALAAARQRWRTAKAAGHA 133


>gi|90419504|ref|ZP_01227414.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336441|gb|EAS50182.1| possible DNA polymerase III chi subunit, HolC [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 150

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 7/139 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LL+    +G RV VQ  SE  RD+L+ +LW ++ + FLPH
Sbjct: 1   MTEVLFYHLTQSRLEEALPDLLEKSLGRGWRVVVQFSSEERRDALDHHLWVYRDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLN-ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G D    G   + QP+LLT+ +   AN   +RFLVD A      ++ Y + V++ +  D 
Sbjct: 61  GSDSDSSG---ALQPILLTVEAEQKANDPQVRFLVDGA--VPASLEGYVRAVYLFDGHDA 115

Query: 119 GSLEWGRAHWRSLKNSGYA 137
             L+  R+ W+  K +G+A
Sbjct: 116 EQLDLARSRWKVEKAAGHA 134


>gi|110680304|ref|YP_683311.1| DNA polymerase III subunit chi [Roseobacter denitrificans OCh 114]
 gi|109456420|gb|ABG32625.1| DNA polymerase III, chi subunit, putative [Roseobacter
           denitrificans OCh 114]
          Length = 155

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M   +FY   +   E  L++LL      G RV V+         L+E LW    D FLPH
Sbjct: 1   MGKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LL+ +S   N +T    VD A +   +V   ++V  + + +D  
Sbjct: 61  GLA---GGAHDARQPILLSTTSDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQ 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  W +LK +G A +
Sbjct: 118 ALDVARGQWSALKKAGAAAE 137


>gi|83312772|ref|YP_423036.1| DNA polymerase III subunit chi [Magnetospirillum magneticum AMB-1]
 gi|82947613|dbj|BAE52477.1| DNA polymerase III, chi subunit [Magnetospirillum magneticum AMB-1]
          Length = 151

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL      G R  V  GS    ++LN+ LWT++ + +LPH
Sbjct: 1   MTQIGFYHLMRLPLEQALPKLLDKALAAGFRAVVLAGSPERVEALNDRLWTYEPESWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     E      QP+ LT S  N N +TI  + D AS     V  Y++ + + + +D  
Sbjct: 61  GSARDGE---PEMQPIWLTHSDENPNGATILVMCDGASS--EKVGAYQRGLDLFDGNDPD 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++E  R  W+  K+ G+
Sbjct: 116 AVEKARERWKRWKSEGH 132


>gi|16125938|ref|NP_420502.1| DNA polymerase III subunit chi [Caulobacter crescentus CB15]
 gi|221234701|ref|YP_002517137.1| DNA polymerase III subunit chi [Caulobacter crescentus NA1000]
 gi|13423106|gb|AAK23670.1| DNA polymerase III, chi subunit, putative [Caulobacter crescentus
           CB15]
 gi|220963873|gb|ACL95229.1| DNA polymerase III, chi subunit [Caulobacter crescentus NA1000]
          Length = 153

 Score =  183 bits (464), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY   ++  E  L  LL+    +G +  V+ G  R  ++L+++LWTW++D FLPHG+
Sbjct: 7   EVWFYHLERSPLEAVLPELLEKTLGRGWKALVRGGDPRRIEALDQHLWTWREDSFLPHGL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +  QPVLLT +  N N+    FL+D A    GD+    + + + +  D  +L
Sbjct: 67  A---SEPMAERQPVLLTAAEGNPNSGDALFLIDGAE--PGDLSGVSRCILLFDGRDDQAL 121

Query: 122 EWGRAHWRSLKNSGYA 137
              R  W + K +G+ 
Sbjct: 122 AQARGRWSTFKKAGHP 137


>gi|197105166|ref|YP_002130543.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1]
 gi|196478586|gb|ACG78114.1| DNA polymerase III, chi subunit [Phenylobacterium zucineum HLK1]
          Length = 148

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY  +    +  L  LL+   ++G +  V+       + L+ +LW+++ D FLPH
Sbjct: 1   MTEVWFYHLERTGLDQALPELLEKTLQRGWKAIVRTPVPERVEHLDGWLWSYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                     ++ QP+LLT+   N N +   FLVD A    GD+  Y++ V + +  D  
Sbjct: 61  A---PAGEPGAARQPILLTMDFENPNGADALFLVDGAE--PGDLAGYQRCVVLFDGADPA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L   R+ W  +K  G++
Sbjct: 116 QLSLARSQWSQVKAKGFS 133


>gi|167646494|ref|YP_001684157.1| DNA polymerase III subunit chi [Caulobacter sp. K31]
 gi|167348924|gb|ABZ71659.1| DNA polymerase III chi subunit HolC [Caulobacter sp. K31]
          Length = 153

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 3   TLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY  +    E  L  LL+    +G R  V+ G      +L+ +LWTW+ D FLPHG+
Sbjct: 7   DIWFYHLERSALEQVLPELLEKTLGRGWRALVRGGDPARLRALDAHLWTWRDDSFLPHGL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
              D+   +  QPVLLT    N N     FL+D A    GD+  +E+ + + +  D+ +L
Sbjct: 67  ---DDEPMADRQPVLLTDKLDNPNGGQALFLLDGAE--PGDLSGFERCILLFDGRDEEAL 121

Query: 122 EWGRAHWRSLKNSGYA 137
              R  W++ K +G+ 
Sbjct: 122 RLARGRWKAFKGAGHP 137


>gi|118590097|ref|ZP_01547500.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata
           IAM 12614]
 gi|118437069|gb|EAV43707.1| putative DNA polymerase III, chi subunit protein [Stappia aggregata
           IAM 12614]
          Length = 150

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            ++FY       E  L  LLQ   E+  +V VQ G+E    +L+ +LWT+  DGFLPHG 
Sbjct: 4   EVVFYHLLHKPLEMALPQLLQKCLERDWKVVVQTGTEERCSALDAHLWTFTDDGFLPHGT 63

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                  +S  QP+ LT    N N + +RFLVD A      +  Y++ +++ + +D  ++
Sbjct: 64  KA---DGYSEHQPIYLTADQDNPNDADVRFLVDRA--TPPPLTAYKRAIYMFDGNDTDAV 118

Query: 122 EWGRAHWRSLKNSGYA 137
           +  R  W+  K  G+ 
Sbjct: 119 QEARNRWKEAKAEGFE 134


>gi|84500992|ref|ZP_00999227.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597]
 gi|84391059|gb|EAQ03477.1| DNA polymerase III subunit chi [Oceanicola batsensis HTCC2597]
          Length = 154

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY    +  E  L  LL      G R++V+  S    D L++ LW    D FLPH
Sbjct: 1   MGDAYFYHLTHSPVERTLPSLLGKALGAGWRIAVRGRSRDRLDWLDQKLWLGPDDDFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           GV+    G   + QP+LLT  +  AN       +D A +   DV   ++V  + + +D  
Sbjct: 61  GVE---GGAHDALQPILLTTGTA-ANDPACLMAIDGAEVAASDVSGMQRVCILFDGNDTE 116

Query: 120 SLEWGRAHWRSLKNSG 135
           +LE  RA WR++  +G
Sbjct: 117 ALEMARAQWRTITAAG 132


>gi|126725338|ref|ZP_01741180.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150]
 gi|126704542|gb|EBA03633.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2150]
          Length = 156

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L  ++      G RV V+  S+   D L++ LWT   DGFLPH
Sbjct: 1   MSATYFYHLTHEPLESALPKIIVKARAAGWRVVVRGTSDERLDWLDKQLWTQTADGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G F + QPVLLT SS   N +     +D A++   DV  +E++  + N ++  
Sbjct: 61  GRS---GGKFDADQPVLLTNSSETPNDAACLIAIDRAAISADDVAKFERICLMFNGNNGD 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  W++L + G+   
Sbjct: 118 ALDDARTQWKTLSDQGFEAQ 137


>gi|218659074|ref|ZP_03515004.1| DNA polymerase III subunit chi [Rhizobium etli IE4771]
          Length = 121

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDVHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G    DE DF+  QPVLLT++  N N +T+RF+VD A         YE++VF+ +  DQ 
Sbjct: 61  GT---DEADFAESQPVLLTVTPDNPNAATVRFIVDGAEPPPA--ASYERIVFMFDGHDQE 115

Query: 120 SLEWGR 125
            LE  R
Sbjct: 116 QLEAAR 121


>gi|163735793|ref|ZP_02143222.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149]
 gi|161390879|gb|EDQ15219.1| DNA polymerase III subunit chi [Roseobacter litoralis Och 149]
          Length = 151

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 5   LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           +FY   +   E  L++LL      G RV V+         L+E LW    D FLPHG+  
Sbjct: 1   MFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPHGLA- 59

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
              G   + QP+LL+ +    N +T    VD A +   +V   ++V  + + +D  +L+ 
Sbjct: 60  --GGAHDARQPILLSTTPDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDPQALDI 117

Query: 124 GRAHWRSLKNSGYAPD 139
            R  W +LK +G A +
Sbjct: 118 ARGQWSTLKKAGAAAE 133


>gi|217978369|ref|YP_002362516.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2]
 gi|217503745|gb|ACK51154.1| DNA polymerase III chi subunit HolC [Methylocella silvestris BL2]
          Length = 151

 Score =  181 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY   +   +  L  L++   EKG RV VQ  SE    +L+++LWT++ D FL HG 
Sbjct: 2   EIWFYHLQRQSLDQALPALIEKSLEKGWRVVVQATSEERLAALDQHLWTYRDDSFLAHGR 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIG-DVDYYEKVVFIINTDDQGS 120
            V  +GD    QPV L+  + N N + +R  ++ A +    D   YE+ +   N +D   
Sbjct: 62  SVDGDGD---LQPVYLSTGAENPNGARLRIFIEGAPIAASLDAGPYERALSAFNGNDADE 118

Query: 121 LEWGRAHWRSLKNSGYA 137
           L   R  W+ LK+ G+A
Sbjct: 119 LAAARTQWKELKDRGFA 135


>gi|254473341|ref|ZP_05086738.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062]
 gi|211957457|gb|EEA92660.1| DNA polymerase III chi subunit [Pseudovibrio sp. JE062]
          Length = 149

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY+      E  L  LL+   E+   V+VQ G+E   D+++ YLWT+  DGFLPH
Sbjct: 1   MSEVLFYQLSKFPLERALPTLLEKCLERDWVVTVQFGTEERCDAIDSYLWTYSDDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +     FQP+ LT  S N N + +RFLVD A +   D   Y++VV++ + +DQ 
Sbjct: 61  GTK---KEGHPEFQPIYLTTESDNPNEAIVRFLVDRAPL--PDPAQYQRVVYMFDGNDQE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L+  R  W  +KNS + 
Sbjct: 116 ALQEARQRWLEVKNSDHE 133


>gi|288958789|ref|YP_003449130.1| DNA polymerase III subunit chi [Azospirillum sp. B510]
 gi|288911097|dbj|BAI72586.1| DNA polymerase III subunit chi [Azospirillum sp. B510]
          Length = 149

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  +L+   E+  R  V  GS    D LN++LWT+    FLPH
Sbjct: 1   MTEVRFYHLQRRTMEQALPKILEKVLERNWRAVVLAGSPERVDMLNQHLWTYDPGSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G        F+  QPV LT +  N N +T+   VD        +D Y  V  + + +D  
Sbjct: 61  G---AARDGFAERQPVWLTDADENPNGATVLVTVDG--CVSDRMDGYALVCDLFDGNDDE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W++ K +G++
Sbjct: 116 AVLAARQRWKACKAAGHS 133


>gi|121602532|ref|YP_988824.1| DNA polymerase III subunit chi [Bartonella bacilliformis KC583]
 gi|120614709|gb|ABM45310.1| DNA polymerase III, chi subunit [Bartonella bacilliformis KC583]
          Length = 149

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L VL++       RV++QC +E  RD+++++LW +    F+ H
Sbjct: 1   MVDILFYHLTQSTPENVLPVLVERALNNFDRVTIQCINEERRDAMDKHLWVYADGAFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +     ++   QPV LT  + N N STIRFL++ A     D+  Y+++V + ++ D+ 
Sbjct: 61  GTEC---DEYPDLQPVFLTTGNENPNNSTIRFLIEGA--VCSDIHSYQRLVVMFDSRDET 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L   RA W++ K   + 
Sbjct: 116 QLNTARAQWKNYKAQNHN 133


>gi|92117861|ref|YP_577590.1| DNA polymerase III subunit chi [Nitrobacter hamburgensis X14]
 gi|91800755|gb|ABE63130.1| DNA polymerase III, chi subunit [Nitrobacter hamburgensis X14]
          Length = 151

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   E+G R  V   SE   D+L+ YLWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMALESVLPPLLEKTIERGWRAVVHTTSEERADALDAYLWTYRDDAFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                ++   +S QP+LLTI   N N +T+RFL+D A +   + + YE++V + + DD  
Sbjct: 61  ATWRIED---ASEQPILLTIDGHNPNRATVRFLIDSAPL-PENPEAYERLVLVFDGDDGI 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L+  R+ W   K  G+ 
Sbjct: 117 ALDAARSVWTECKARGFE 134


>gi|307946746|ref|ZP_07662081.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4]
 gi|307770410|gb|EFO29636.1| DNA polymerase III chi subunit [Roseibium sp. TrichSKD4]
          Length = 150

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            ++FY       E  L  LL    ++  +V VQ GS+   D+L+ +LWT+  D FLPHG 
Sbjct: 4   DVVFYHLLHKPLEAALPQLLLKCLDRDCKVVVQTGSQERCDALDAHLWTFSDDSFLPHGT 63

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   + FQP+ LT    N N + +RFLVD A      +  Y++ +++ +  D+ ++
Sbjct: 64  KA---DGHAEFQPIYLTCEDDNPNQADVRFLVDRAVRPP--LHGYQRAIYMFDGRDEEAV 118

Query: 122 EWGRAHWRSLKNSGYA 137
              R +W+S K+ G+ 
Sbjct: 119 AEARQNWKSAKSEGFN 134


>gi|328544009|ref|YP_004304118.1| DNA polymerase III, chi subunit protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413753|gb|ADZ70816.1| Putative DNA polymerase III, chi subunit protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 150

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 2   RTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
              LFY  ++   E  L  LL    ++  RV VQ GS     +L+ +LWT+  D FLPHG
Sbjct: 3   AEALFYHLQHQPLEAMLPGLLMKCLDRDWRVVVQTGSPERCAALDAHLWTFADDAFLPHG 62

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    +  QP+ LT +  N N +T+RFLVD A      +  YE+VV++ +  D  +
Sbjct: 63  TAA---DGHAEDQPIFLTAAGDNPNRATVRFLVDRA--QPPPLAGYERVVYVFDGRDPEA 117

Query: 121 LEWGRAHWRSLKNSGYA 137
           +   R  W+  K  G+ 
Sbjct: 118 VAEARLRWKEAKEQGFT 134


>gi|126739397|ref|ZP_01755090.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6]
 gi|126719497|gb|EBA16206.1| DNA polymerase III subunit chi [Roseobacter sp. SK209-2-6]
          Length = 152

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +      L+VLL+     G  ++V+         L++ LW    D FL H
Sbjct: 1   MGAAYFYHLTRKPMPETLMVLLEKARGAGWAIAVRGQDPDRMTWLDDALWLGSDDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LLT ++  AN       VD A +   +V   E+V  + + +D  
Sbjct: 61  GLA---GGPHDALQPILLTATAQAANDPKCLMSVDGAGVEAEEVQALERVCILFDGNDMQ 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W++L  +G    
Sbjct: 118 AVQRAREQWKALTGAGCKAQ 137


>gi|23016368|ref|ZP_00056125.1| COG2927: DNA polymerase III, chi subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 151

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL      G R  V  GS+   + LN  LWT++ D +LPH
Sbjct: 1   MTQIGFYHLMRLPLEQALPKLLDKALAAGFRAVVLAGSQERVEDLNGRLWTYEPDSWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     E   +  QP+ LT +  N N +TI  + D ++     V  +++ + + + +D  
Sbjct: 61  GSARDGE---AEMQPIWLTHTDENPNGATILVMCDGSAS--ERVGAFQRCLDLFDGNDAE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++E  R  W+  K  G+ 
Sbjct: 116 AVEKARERWKRWKAEGHE 133


>gi|323137701|ref|ZP_08072777.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242]
 gi|322396998|gb|EFX99523.1| DNA polymerase III chi subunit HolC [Methylocystis sp. ATCC 49242]
          Length = 159

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 7/141 (4%)

Query: 1   MRTLLFYR-FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY    +  E  L VLL+    +G RV +Q  SE     L++YLW+++ + FLPH
Sbjct: 1   MPEIAFYHHTNSTLEQTLPVLLEKSLARGWRVVIQAASEARLRRLDQYLWSYRPESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI---GDVDYYEKVVFIINTD 116
           G            QP+ LT ++ N N + +RF V+ A +      D    E+ V + + +
Sbjct: 61  GTKADAS---PQTQPIYLTCAADNPNGADVRFFVEGAHIAPVLQSDAAPRERAVLLFSGE 117

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D+  L   RA W+ L+++G+ 
Sbjct: 118 DEAELAGARAQWKELRDAGHT 138


>gi|319405496|emb|CBI79115.1| putative DNA polymerase III chi subunit [Bartonella sp. AR 15-3]
          Length = 149

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   K+  +  L VL++   ++  R+++QC S+   + ++  LW +  + F+ H
Sbjct: 1   MVDILFYHLTKSTLKDTLPVLVERALKRFGRITIQCMSKEQCNFIDTCLWVYSDESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +     ++   QPV LT    N N S +RFL++ A     D+D Y+++V + +  +  
Sbjct: 61  GTEY---DNYPDLQPVFLTTGQENPNDSQVRFLIEGA--VCSDIDIYQRIVIMFDGHNDA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L   R  W+  K   Y 
Sbjct: 116 QLNLIREQWKDYKTKNYN 133


>gi|163739702|ref|ZP_02147110.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107]
 gi|161386932|gb|EDQ11293.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis BS107]
          Length = 154

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL      G R+ V+         L+E LW   +D FLPH
Sbjct: 1   MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVRGVDLPRITRLDERLWLGAEDQFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLL+  +     ++    VD A +   +V   E+V  + +  +  
Sbjct: 61  GL---VGGPHDALQPVLLSHETTPVPGTSCLMAVDGAEVTAEEVTALERVCILFDGTNPD 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           ++   R  W+SL ++G +  
Sbjct: 118 AVARARVQWKSLTDAGCSAQ 137


>gi|163743165|ref|ZP_02150547.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10]
 gi|161383582|gb|EDQ07969.1| DNA polymerase III subunit chi [Phaeobacter gallaeciensis 2.10]
          Length = 154

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL      G R+ V+         L+E LW   +D FLPH
Sbjct: 1   MGAAYFYHLTRRSLEETLPVLLDKALGAGWRIVVRGVDLPRITRLDERLWLGAEDQFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLL+  +     ++    VD A +   +V   E+V  + +  +  
Sbjct: 61  GL---VGGPHDALQPVLLSHETTPVPGTSCLMTVDGAEVTAEEVTALERVCILFDGTNPD 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           ++   R  W+SL ++G +  
Sbjct: 118 AVARARVQWKSLTDAGCSAQ 137


>gi|319404057|emb|CBI77645.1| putative DNA polymerase III chi subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 149

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   K+  +  L VL++   ++  R+++QC ++   + ++  LW +  + F+ H
Sbjct: 1   MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +      +   QPV LT    N N S +RFL+D A     DVD Y+++V + +  +  
Sbjct: 61  GTEY---DKYPDLQPVFLTTGQENPNDSKVRFLIDGA--VCSDVDIYQRLVIMFDGHNDT 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L   R  W+  K   Y 
Sbjct: 116 QLNLIREQWKDYKTKNYN 133


>gi|163746446|ref|ZP_02153804.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45]
 gi|161380331|gb|EDQ04742.1| DNA polymerase III subunit chi [Oceanibulbus indolifex HEL-45]
          Length = 152

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +      L +LL+     G RV+++        +L+  LWT+ +D FLPH
Sbjct: 1   MGAAYFYHLTQRPLVETLTMLLEKSLANGWRVALRGTDPEGLQALDRALWTFSEDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +  GD     + QPVLLT+     N +     V  A +   ++   ++V  + +  D  
Sbjct: 61  AIAGGDR---DADQPVLLTLEDGAPNRADCLMAVHGAHVTAQEIAALQRVCVLFDGHDPM 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L+  R  W+ LK+ G +  
Sbjct: 118 ALDQARGLWKRLKSEGASAQ 137


>gi|144900065|emb|CAM76929.1| DNA polymerase III chi subunit, HolC [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 151

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   +  L  LL+   + G RV V  GS    + LN  LWT+ ++ +LPH
Sbjct: 1   MTQIGFYHLMRLPLDQALPKLLEKAVQAGLRVVVMAGSSERVEHLNAILWTFSEESWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     E   ++ QP+ LT    N NT+T+  L D A      +D +++ + + + +D+ 
Sbjct: 61  GSASDGE---AALQPIWLTEREENPNTATVLVLCDGA--RPTSLDGWDRCLDLFDGNDEN 115

Query: 120 SLEWGRAHWRSLKNSGY 136
           ++   R  W++ K  G+
Sbjct: 116 AVLAARERWKTWKAEGH 132


>gi|114704777|ref|ZP_01437685.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506]
 gi|114539562|gb|EAU42682.1| DNA polymerase III subunit chi [Fulvimarina pelagi HTCC2506]
          Length = 150

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E  L  LLQ    +G RV VQC SE  RDSL+  LWT+ ++ FLPH
Sbjct: 1   MAEVLFYHLTESRLEDALPELLQRSLARGWRVVVQCTSEERRDSLDNVLWTFSEESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLN-ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G D          QP+LLT  +   AN   +RF+VD A    GD+  Y + V++ +  D 
Sbjct: 61  GTDAEA---HPESQPILLTTRADQFANKPDVRFMVDGA--TPGDLTGYIRGVYMFDAFDT 115

Query: 119 GSLEWGRAHWRSLKNSGYA 137
             +   R  W+  K++G+ 
Sbjct: 116 DQMAHAREQWQVEKSAGHE 134


>gi|163868029|ref|YP_001609233.1| DNA polymerase III subunit chi [Bartonella tribocorum CIP 105476]
 gi|161017680|emb|CAK01238.1| putative DNA polymerase III chi subunit [Bartonella tribocorum CIP
           105476]
          Length = 148

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            +LFY   ++  +  L  L++    +  +V++QC S+  RDS++ +LW +  + F+ HG 
Sbjct: 2   DILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSKEQRDSIDMHLWVYADESFIGHGT 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
           +      +++ QPV LTI   N N S IRFL++ A     D++ Y+++V + +  +   L
Sbjct: 62  EC---DQYANLQPVFLTIGQENPNDSKIRFLIEGA--VCSDINVYQRLVVLFDGRNDEQL 116

Query: 122 EWGRAHWRSLKNSGYA 137
            + RA W+  K   + 
Sbjct: 117 NFARAQWKKYKMENHN 132


>gi|319407070|emb|CBI80707.1| putative DNA polymerase III chi subunit [Bartonella sp. 1-1C]
          Length = 149

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   K+  +  L VL++   ++  R+++QC ++   + ++  LW +  + F+ H
Sbjct: 1   MVDIFFYHLTKSTLKETLPVLVERALKRFGRITIQCMNKEQCNFIDTCLWVYADESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +      +   QPV LT    N N S +RFL+D A     D++ Y++VV + +  +  
Sbjct: 61  GTEYDR---YPELQPVFLTTGQENPNDSKVRFLIDGA--VCSDINIYQRVVIMFDGHNDM 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L   R  W+  K   Y 
Sbjct: 116 QLNLIREQWKDYKTKNYN 133


>gi|295689674|ref|YP_003593367.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756]
 gi|295431577|gb|ADG10749.1| DNA polymerase III chi subunit HolC [Caulobacter segnis ATCC 21756]
          Length = 154

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY   ++  E  L  LL+    +G +  V+ G  +  ++L++ LWT+++D FLPHG+
Sbjct: 8   EVWFYHLERSPLEAVLPELLEKTLGRGWKALVRGGDLKRIEALDQQLWTYREDSFLPHGL 67

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +  QPVLLT    N N     FL+D A    GD+    + + + +  D  +L
Sbjct: 68  A---SEPMAERQPVLLTAEEGNPNHGDAIFLIDGAD--PGDLSGVSRCILLFDGRDDQAL 122

Query: 122 EWGRAHWRSLKNSGYA 137
              R  W   K +G+ 
Sbjct: 123 AEARGRWSVFKKAGHP 138


>gi|319898732|ref|YP_004158825.1| DNA polymerase III chi subunit [Bartonella clarridgeiae 73]
 gi|319402696|emb|CBI76242.1| putative DNA polymerase III chi subunit [Bartonella clarridgeiae
           73]
          Length = 149

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   K+  +  L VL++   ++  R+++QC S+   + ++  LW +  + F+ H
Sbjct: 1   MVDILFYHLTKSTLKETLPVLVERALKRFGRITIQCVSKEQCNFIDTCLWVYADESFIGH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +      +   QPV LTI   N N S +RFL++ A     D+D Y+++V + +  +  
Sbjct: 61  GTEY---DKYPDLQPVFLTIGQENPNGSKVRFLIEGA--ICSDIDIYQRLVIMFDGHNDE 115

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   R  W+  K   Y
Sbjct: 116 QLNLIRKQWKEYKTKNY 132


>gi|49475340|ref|YP_033381.1| DNA polymerase III subunit chi [Bartonella henselae str. Houston-1]
 gi|49238146|emb|CAF27354.1| hypothetical protein BH05460 [Bartonella henselae str. Houston-1]
          Length = 154

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            +LFY   ++  E  L  L++    +  RV++QC S+  RD+++  LW +  + F+ HG 
Sbjct: 8   DILFYHLTQSTLEDILPTLVERALGRFSRVTIQCVSKERRDAIDTRLWVYADEAFIGHGT 67

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
           +      + +FQPV LT    N N S IRFL++ A     D++ Y+++V + +      L
Sbjct: 68  EC---DQYPNFQPVFLTTGQENPNDSKIRFLIEGA--ICSDINAYQRLVVLFDGQSDEQL 122

Query: 122 EWGRAHWRSLKNSGYA 137
              RA W+  K   + 
Sbjct: 123 HIVRAQWKKYKMENHN 138


>gi|296446339|ref|ZP_06888284.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium
           OB3b]
 gi|296256112|gb|EFH03194.1| DNA polymerase III chi subunit HolC [Methylosinus trichosporium
           OB3b]
          Length = 155

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL+    +G R  VQ  S R   +++E LW++  + FLPH
Sbjct: 1   MTEVWFYHLQRRPLESALPKLLELSLARGWRAVVQAASPRRLATIDELLWSYDPESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHI----GDVDYYEKVVFIINT 115
           G     +      QPV LT+   N N + +R  ++ A              ++ + + + 
Sbjct: 61  GTQRDGD---PQSQPVFLTLLPDNPNRADVRVFIESAEAAPVLADPAAAPTQRAMVMFDG 117

Query: 116 DDQGSLEWGRAHWRSLKNSGY 136
           +D+ +L+  RA WR+LK +G+
Sbjct: 118 NDETALQNARAQWRTLKEAGH 138


>gi|240850233|ref|YP_002971626.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup]
 gi|240267356|gb|ACS50944.1| DNA polymerase III subunit chi [Bartonella grahamii as4aup]
          Length = 148

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            +LFY   ++  +  L  L++    +  +V++QC SE  RDS++ +LW +  + F+ HG 
Sbjct: 2   DILFYHLTQSTLKDILPTLVERALARFGKVTIQCVSEEQRDSMDMHLWVYADESFIGHGT 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
           +      +S+FQPV LT    N N S IRFL++ A     ++D Y+++V I +  D   L
Sbjct: 62  EC---DQYSNFQPVFLTTGQENPNDSKIRFLIEGA--VCSNIDTYQRLVVIFDGRDDEQL 116

Query: 122 EWGRAHWRSLKNSGYA 137
              RA W+  K   + 
Sbjct: 117 SLVRAQWKKYKMENHN 132


>gi|83953616|ref|ZP_00962337.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1]
 gi|83841561|gb|EAP80730.1| DNA polymerase III subunit chi [Sulfitobacter sp. NAS-14.1]
          Length = 152

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +      L +LL      G RV+V+   + + + L+  LW   +DGFLPH
Sbjct: 1   MGAAYFYHLTQRPLVETLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  +   N ++  F +  A++   +V   ++V  + +  D  
Sbjct: 61  GLA---GGPHDAEQPVLLTTDTHAPNNASCVFSIHGAAVSAQEVAALDRVCILFDGLDDH 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L   R  W+SLK +G +  
Sbjct: 118 ALNVARDQWKSLKAAGASAQ 137


>gi|319408321|emb|CBI81974.1| putative DNA polymerase III chi subunit [Bartonella schoenbuchensis
           R1]
          Length = 148

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            +LFY   ++  E  L VL++    + +RV++QC SE  RD+++  LW + +  F+ HG 
Sbjct: 2   DILFYHLTQSTLEDILPVLVERAVARFERVTIQCISEEQRDAIDTRLWVYAEGSFIGHGT 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
           +      + +FQPV LT    N N S IRFL++ A     D++ Y+++V I +  +   L
Sbjct: 62  EC---DKYPNFQPVFLTTGHENPNDSKIRFLIEGA--VCPDINIYQRLVVIFDGRNNEQL 116

Query: 122 EWGRAHWRSLKNSGYA 137
              RA W+      + 
Sbjct: 117 NLARAQWKEYGTENHN 132


>gi|254460669|ref|ZP_05074085.1| DNA polymerase III chi subunit, HolC [Rhodobacterales bacterium
           HTCC2083]
 gi|206677258|gb|EDZ41745.1| DNA polymerase III chi subunit, HolC [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 153

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L +LL      G R  V   + +  D+L+  LW      FL H
Sbjct: 1   MGAVYFYHLTRKPLEATLPLLLSKARSAGWRCLVVGRNPQRLDALDTQLWQGAGTDFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G   G +    + QP+LL  +  + N +     +D A +    V  Y +   + + +++ 
Sbjct: 61  GRAGGVQ---DAAQPILLADTQTDINDAECAMCIDGADVTPDQVKTYARTCILFDGNNEQ 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
            ++  R  W++L ++G A  
Sbjct: 118 EVQTARIQWKTLTDAGCAAQ 137


>gi|83942396|ref|ZP_00954857.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36]
 gi|83846489|gb|EAP84365.1| DNA polymerase III subunit chi [Sulfitobacter sp. EE-36]
          Length = 152

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +      L +LL      G RV+V+   + + + L+  LW   +D FLPH
Sbjct: 1   MGAAYFYHLTQRPLVETLTMLLGKAQGAGWRVAVRGTDQSLLEQLDVALWRGPEDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  +   N  +  F +  A++   +V   ++V  + +  D  
Sbjct: 61  GLA---GGPHDAEQPVLLTTDTHAPNNVSCVFSIHGAAVSAQEVAALDRVCILFDGLDDH 117

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +L   R  W+SLK +G +  
Sbjct: 118 ALNVARDQWKSLKAAGASAQ 137


>gi|89054307|ref|YP_509758.1| DNA polymerase III subunit chi [Jannaschia sp. CCS1]
 gi|88863856|gb|ABD54733.1| DNA polymerase III chi subunit HolC [Jannaschia sp. CCS1]
          Length = 154

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL    + G RV+V+  ++ V D L+E LW   +DGFLPH
Sbjct: 1   MGEAYFYHLTQAPLEVTLRVLLGKSLQAGWRVAVRGRTDAVLDRLDEQLWLVPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      GD  + QPVLLT      N  T    V+ AS+   +VD  ++V+ + +  D  
Sbjct: 61  GRA---GGDHDAAQPVLLTTGPAG-NDPTCLVSVEGASIDAAEVDAMDRVMVLFDGHDDA 116

Query: 120 SLEWGRAHWRSLKNSGYAP 138
           +L+  R  W++L  +G A 
Sbjct: 117 ALQTAREQWKTLTAAGVAA 135


>gi|304392002|ref|ZP_07373944.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130]
 gi|303296231|gb|EFL90589.1| DNA polymerase III chi subunit [Ahrensia sp. R2A130]
          Length = 151

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY       E  L  L++    +   V +Q G E  RD L+E LWT+  + FLPH
Sbjct: 1   MTDIHFYHLTTGKLEAALPQLVERCRGREWNVVIQAGQEAARDELDELLWTYNDESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             +    G+     P+ LT      N + +RF+V  A++   +   YE+V+ + +  D  
Sbjct: 61  WREGNGPGEG-GDNPIWLTTGDERPNNAAVRFVVAGATVSKPE--DYERVITMFDGYDDN 117

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R+ W+ LK +G+ 
Sbjct: 118 AVAQARSQWKELKAAGHT 135


>gi|49474102|ref|YP_032144.1| DNA polymerase III subunit chi [Bartonella quintana str. Toulouse]
 gi|49239606|emb|CAF25963.1| hypothetical protein BQ04640 [Bartonella quintana str. Toulouse]
          Length = 153

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY   ++  E  L  L++       RV++QC ++  RD+++ +LW +  + F+ HG 
Sbjct: 7   DIFFYHLMQSTLEDILPTLVERALAAFGRVTIQCVNKERRDAIDMHLWVYADEAFIGHGT 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
           +      + +FQPV LT    N N S IRFL++ A     D+D Y+++V I +      L
Sbjct: 67  EC---DQYPNFQPVFLTTGQENPNDSKIRFLIEGA--ICSDIDAYQRLVVIFDDHSDEQL 121

Query: 122 EWGRAHWRSLKNSGYA 137
              RA W+  K   + 
Sbjct: 122 NLVRAQWKKYKMENHN 137


>gi|148255230|ref|YP_001239815.1| DNA polymerase III subunit chi [Bradyrhizobium sp. BTAi1]
 gi|146407403|gb|ABQ35909.1| DNA polymerase III, chi subunit [Bradyrhizobium sp. BTAi1]
          Length = 150

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +N   E  L  LL+   E+G RV VQ  SE   D+L+ +LWT++ D FLPH
Sbjct: 1   MTEVLFYHLQNMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +    + QP++L +   N N + +RFLVD A +   D   YE++V + N DD  
Sbjct: 61  ATWRVAD---VADQPIVLAVEESNPNQANVRFLVDNAPL-PSDAHTYERMVLVFNGDDDE 116

Query: 120 SLEWGRAHWRSLKNSGYA 137
           +L   RA W   K  G+ 
Sbjct: 117 ALAAARAAWTDCKTRGFE 134


>gi|300022387|ref|YP_003754998.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524208|gb|ADJ22677.1| DNA polymerase III chi subunit HolC [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 148

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 3   TLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY  ++   E  L  LL+    +G R  VQ GSE   D+L+  LWT+  + FL HG 
Sbjct: 2   DVYFYHLEHQTLERVLPSLLEKTLARGWRAVVQAGSEERLDALDLALWTYDDESFLAHGT 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   ++ QPV LT+   N N + +RF VD A       +  E+ V++ +  D  +L
Sbjct: 62  ARIG---HANLQPVYLTLGHENPNGAGVRFFVDGAE--ADKFEGAERFVYVFDGHDPEAL 116

Query: 122 EWGRAHW 128
              R  W
Sbjct: 117 TSARGQW 123


>gi|315122197|ref|YP_004062686.1| DNA polymerase III subunit chi [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495599|gb|ADR52198.1| DNA polymerase III subunit chi [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 141

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 86/136 (63%), Positives = 117/136 (86%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M   LF RFK++W+ + L+LL+ EY+ G R+S+QCGSER+RD+LNE LWTWKKD F+PHG
Sbjct: 1   MTDFLFCRFKHNWQNDFLILLESEYQNGLRISIQCGSERIRDALNERLWTWKKDSFMPHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +DVG+E   +SFQP+LLT+SS NAN S +RF VD+ASMHIGD+D+Y+K++FII+TDDQ S
Sbjct: 61  IDVGEEEALASFQPILLTVSSNNANASMVRFFVDQASMHIGDMDHYKKIIFIIDTDDQAS 120

Query: 121 LEWGRAHWRSLKNSGY 136
           L+WGRA+W++LK++GY
Sbjct: 121 LKWGRANWKNLKSNGY 136


>gi|114569779|ref|YP_756459.1| DNA polymerase III subunit chi [Maricaulis maris MCS10]
 gi|114340241|gb|ABI65521.1| DNA polymerase III, chi subunit [Maricaulis maris MCS10]
          Length = 150

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
             L FY   ++  +  L  LL+    +G R  V+    + R+++++ LWTW++D FLPHG
Sbjct: 3   GDLWFYHLERSSLDEVLPELLEKTLARGWRALVRSPDAKRREAIDQLLWTWREDSFLPHG 62

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                E      QPVL+     N N +   FL+D A         +++++ + +  D+ +
Sbjct: 63  ---QVEAGSPERQPVLIAEDEANPNGAHCLFLLDGAE--PEKPSSFDRMIVMFDGQDEMA 117

Query: 121 LEWGRAHWRSLKNSGYA 137
           +   RA W+     G  
Sbjct: 118 VTDARALWKKASAEGCT 134


>gi|302383685|ref|YP_003819508.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194313|gb|ADL01885.1| DNA polymerase III chi subunit HolC [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 153

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
             + FY   ++  +  L  LL    ++G R  ++      R  +++ LW+W+ D FL HG
Sbjct: 6   GEIWFYHLERSTLDQVLPELLDKTLQRGWRARIRVADPDRRAEIDDTLWSWRADSFLAHG 65

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++ QP+LLT  + N N S   F+VD + M + +   +E+   I +  D+ +
Sbjct: 66  ---QADQPHAARQPILLTAGTENPNASQALFIVDGSDMTVTE--EFERCFIIFDGRDEAA 120

Query: 121 LEWGRAHWRSLKNSG 135
           L+  R  W++LK  G
Sbjct: 121 LQTARDRWKALKGQG 135


>gi|329890118|ref|ZP_08268461.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|90403466|dbj|BAE91932.1| DNA polymerase III chi subunit [Brevundimonas diminuta]
 gi|328845419|gb|EGF94983.1| DNA polymerase III chi subunit, HolC family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 153

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
             + FY   ++  +  L  LL+   ++G R  ++  +    D ++E LWT++ D FLPHG
Sbjct: 6   PEIWFYHLERSTLDQVLPTLLERTLQRGWRALIRGATSHRLDDIDELLWTYRDDSFLPHG 65

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +G  ++ QPVLL+ S  N N +   F+VD++ +  G    + +   I +  D+ +
Sbjct: 66  RA---DGGHAARQPVLLSESGENLNGAQALFIVDDSEL--GATQEFARCFIIFDGRDEQA 120

Query: 121 LEWGRAHWRSLKNSG 135
           L   R  WR+LK  G
Sbjct: 121 LNHARGRWRTLKADG 135


>gi|126736389|ref|ZP_01752131.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2]
 gi|126714210|gb|EBA11079.1| DNA polymerase III subunit chi [Roseobacter sp. CCS2]
          Length = 164

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY    +  E  L +L+      G RV V+   E +   L++ LW   +DGF PH
Sbjct: 13  MGAVFFYHLTDSPLEATLPMLIGKARGAGWRVLVRGRDEALLRLLDDVLWQGPEDGFQPH 72

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LL    + ++       V  A +   +V+  E+   +    D  
Sbjct: 73  GMA---GGPHDADQPILL--GDVPSDGFGCVMSVAGADVTADEVNALERACILFAGHDDA 127

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +LE  R  W++L ++G A  
Sbjct: 128 ALEHARGQWKTLTDAGCAAQ 147


>gi|84684879|ref|ZP_01012779.1| DNA polymerase III subunit chi [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667214|gb|EAQ13684.1| DNA polymerase III subunit chi [Rhodobacterales bacterium HTCC2654]
          Length = 149

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   +   E  L VLL    E+G RV V+  SE     L+E LW    DGFLPH
Sbjct: 1   MGEAYFYHMTRTPLEDTLPVLLGRAREQGWRVVVRGRSEARLRWLDEKLWMG--DGFLPH 58

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G     QP+LLT  +     +     +D A +   +V    +V+ + + +D G
Sbjct: 59  GIS---GGPHDDDQPILLTTGTAT---ADCVVSMDGAEVAPDEVGEAARVMILFDGNDDG 112

Query: 120 SLEWGRAHWRSLKNS 134
           ++E  R  WR++  +
Sbjct: 113 AVERAREQWRTMTGA 127


>gi|89070354|ref|ZP_01157661.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus
           HTCC2516]
 gi|89044001|gb|EAR50176.1| DNA polymerase III, chi subunit, putative [Oceanicola granulosus
           HTCC2516]
          Length = 151

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   ++  E  L +LL+     G R  V+  S  +   L+E LW   +DGFLPH
Sbjct: 1   MGAAYFYHLTRDPLERTLPMLLEKARTVGWRCEVRATSRALLARLDEQLWLHPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT  +   N +     V+ A +   +V   E+   + +  D G
Sbjct: 61  GLA---GGPHDADQPVLLT-DTRGTNNAACLLAVEGAEVSAEEVQALERTCILFDGADPG 116

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +++  R  W  L ++G A  
Sbjct: 117 AVQIARGQWARLTDAGCAAQ 136


>gi|254418859|ref|ZP_05032583.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp.
           BAL3]
 gi|196185036|gb|EDX80012.1| DNA polymerase III, chi subunit superfamily [Brevundimonas sp.
           BAL3]
          Length = 152

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
             + FY   ++  +  L  LL+   E+G R  ++       D ++E LW++  + FLPHG
Sbjct: 5   PEIWFYHLERSTLDQVLPTLLEKTLERGWRALIKSAHAHRLDDVDERLWSFHDESFLPHG 64

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   +  QPVLL+ S  N N +   F+VD+A + + +   +E+   I +  D+ +
Sbjct: 65  RA---DQPHADRQPVLLSESGENLNGAQALFIVDDAELGVTE--GFERCFIIFDGRDEPA 119

Query: 121 LEWGRAHWRSLKNSG 135
           L++ R  W++LK  G
Sbjct: 120 LQYARGRWKTLKEQG 134


>gi|254486570|ref|ZP_05099775.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101]
 gi|214043439|gb|EEB84077.1| DNA polymerase III subunit chi [Roseobacter sp. GAI101]
          Length = 153

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLW-TWKKDGFLP 58
           M    FY   +      L +LL      G RV+V+     V   ++  LW    +DGFLP
Sbjct: 1   MGAAYFYHLTRRPLVETLTMLLGKAQGAGWRVAVRGTDAAVLAQMDAALWRQGPEDGFLP 60

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+     G   + QP+LLT S+   N ++  F +  A +   +V   ++V  + + +D 
Sbjct: 61  HGMA---GGPHDAAQPILLTTSADIPNGASCVFSIHGAEVSAAEVAALDRVCILFDGEDD 117

Query: 119 GSLEWGRAHWRSLKNSGYAPD 139
            +L   R  W++LK +G +  
Sbjct: 118 IALNKARGQWKALKAAGASAQ 138


>gi|255264162|ref|ZP_05343504.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62]
 gi|255106497|gb|EET49171.1| DNA polymerase III subunit chi [Thalassiobium sp. R2A62]
          Length = 152

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY       E  L +L+      G RV V+         L+E LW      FLPH
Sbjct: 1   MGAAYFYHLTAAPLEQTLPMLIGKAQGAGWRVVVRGRDAARIVWLDEKLWAGDPTSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     GD  + QPVLL   +           VD A +  G+V   E+V  + +  D  
Sbjct: 61  GIA---GGDHDADQPVLLRADTQTVIDG-CLMAVDGAEVTAGEVAACERVCILFDGLDGN 116

Query: 120 SLEWGRAHWRSLKNSG 135
           +L   R  W++L ++G
Sbjct: 117 ALARAREQWKALTDAG 132


>gi|296116650|ref|ZP_06835260.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976862|gb|EFG83630.1| DNA polymerase III subunit chi [Gluconacetobacter hansenii ATCC
           23769]
          Length = 147

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   ++  E  L  LL    + G+R  V+CG +     L++ LW      +LPH
Sbjct: 1   MAEVGFYHLTRSTLEQALPALLGRTLDAGRRAVVRCGDDARVKWLDDALWRATDPLWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G          S+QP+ LT      N +T  FL+D   +       +E+V  + +  D+ 
Sbjct: 61  GTRALG---HESWQPIWLTAGEDVPNGATFAFLIDG--VSCTQPGLFERVFDLFDGHDEN 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W+  + +G+ 
Sbjct: 116 AVAAARQRWKVCREAGHT 133


>gi|254502537|ref|ZP_05114688.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii
           DFL-11]
 gi|222438608|gb|EEE45287.1| DNA polymerase III, chi subunit superfamily [Labrenzia alexandrii
           DFL-11]
          Length = 150

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 6/135 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            ++FY       E  L  LLQ   E+  +V VQ GS+   ++L+ +LWT++ D FLPHG 
Sbjct: 4   EVVFYHLLHKPLELALPELLQKCLERNWKVVVQTGSQERCNALDAHLWTYQDDSFLPHGT 63

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                  ++  QP+ LT    N N + +RFLVD A+     +D Y++ +++ + +DQG++
Sbjct: 64  KA---DGYAEHQPIYLTFEQDNPNEADVRFLVDRAA--PPTLDPYKRAIYMFDGNDQGAV 118

Query: 122 EWGRAHWRSLKNSGY 136
           +  R  W+  K+SG+
Sbjct: 119 DEARTAWKEAKSSGF 133


>gi|182677642|ref|YP_001831788.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633525|gb|ACB94299.1| DNA polymerase III chi subunit HolC [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 156

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY   ++  E  L  LL+   E G R  VQ  SE     L+++LW +    FL HG 
Sbjct: 4   DIWFYHLQRHPIERVLPKLLEKSLEHGWRAIVQARSEERLAVLDQWLWVYSDASFLAHGR 63

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS----MHIGDVDYYEKVVFIINTDD 117
               +   +  QPV LT    N N + +R  ++ A     M       Y +++ + N  D
Sbjct: 64  ACDGD---AVMQPVYLTTEMDNPNGARLRLFIEGADIVSLMQDPSSSLYARMIVLFNGHD 120

Query: 118 QGSLEWGRAHWRSLKNS 134
           +  L   R  W+ LK  
Sbjct: 121 EEELTIARRQWQDLKAR 137


>gi|260576759|ref|ZP_05844744.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2]
 gi|259021011|gb|EEW24322.1| DNA polymerase III chi subunit HolC [Rhodobacter sp. SW2]
          Length = 155

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   ++  E     LL    + G RV ++         L+E LW   ++GFLPH
Sbjct: 1   MVLVLFYHLTRSPVEATAAGLLSRALDLGWRVMLRGTDPARLALLDERLWLGPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLL   ++  N +    LVD A    G+ +  E+V  + + +D  
Sbjct: 61  GLQ---GGPQDADQPVLLGTGAIG-NAAHALMLVDGAEPLTGEAEALERVWVLFDGNDPA 116

Query: 120 SLEWGRAHWRSLKNSG 135
           +LE  RA W++L   G
Sbjct: 117 ALETARAQWKTLTAQG 132


>gi|77463455|ref|YP_352959.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides 2.4.1]
 gi|77387873|gb|ABA79058.1| putative DNA polymerase III chi subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 152

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  ++FY   ++  E  L +LL     +G RV ++       ++L+  LW   ++GFLPH
Sbjct: 1   MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRVRLEALDLALWRVPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G++    G   + QPVLL   ++  N +    L+D A     +    E+V  + +  D+ 
Sbjct: 61  GME---GGPHDAVQPVLLGTGAIG-NGAQALMLLDGAETQAAEAAPLERVWILFDGLDEA 116

Query: 120 SLEWGRAHWRSLKNSG 135
            L   R  W++L  +G
Sbjct: 117 ELARARGQWKALTGAG 132


>gi|312114900|ref|YP_004012496.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220029|gb|ADP71397.1| DNA polymerase III chi subunit HolC [Rhodomicrobium vannielii ATCC
           17100]
          Length = 158

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
               FY   +   +  L VL++    +G R S++  S    D+++  LWT+++D FLPHG
Sbjct: 11  PEFWFYHLERQPLQAVLPVLVEKTLARGWRASLRFSSAERLDAIDTALWTYREDSFLPHG 70

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    +  QPV LT+   N N + + FL++ A     + + + +V+ + +  D  +
Sbjct: 71  TA---RDGHADRQPVFLTLEEANPNNAEVLFLLEGARE--SEPERFVRVIRLFDDPDDEA 125

Query: 121 LEWGRAHWRSLKNSG 135
               R  WR  K +G
Sbjct: 126 KAIAREEWRGAKAAG 140


>gi|315500010|ref|YP_004088813.1| DNA polymerase iii chi subunit holc [Asticcacaulis excentricus CB
           48]
 gi|315418022|gb|ADU14662.1| DNA polymerase III chi subunit HolC [Asticcacaulis excentricus CB
           48]
          Length = 149

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +      L  LL+   +KG +  V   +  +   L+++LW ++ + FLPH
Sbjct: 1   MTQVWFYHLERTPLRAALPDLLEKTLQKGWKAYVLGEAGDMLVGLDQHLWAYRDEAFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G++   E   ++ QPVLL  S  NAN + + F V  ++M++ ++  Y++ + +    D+ 
Sbjct: 61  GLESEPE---AARQPVLLGDSGGNANAADVLFSV--SAMNLPELSPYQRCLILFEGQDET 115

Query: 120 SLEWGRAHWRSLKNSG 135
            L W RA W++LK   
Sbjct: 116 HLNWARAQWKALKARN 131


>gi|310816135|ref|YP_003964099.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25]
 gi|308754870|gb|ADO42799.1| DNA polymerase III subunit chi [Ketogulonicigenium vulgare Y25]
          Length = 152

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + F++         L VLL    E+G RV ++        +L+  LW    DGFLPH
Sbjct: 1   MAEIQFFQLFDGPVAATLPVLLNRSLERGWRVILRGTDPARMAALDVDLWRRDDDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QPVLLT      +       VD A+    +    E+VV I +  D  
Sbjct: 61  GLA---GGPHDALQPVLLTTGDGLPDG-DCLICVDMATATPAECASLERVVLIFDGHDPQ 116

Query: 120 SLEWGRAHWRSLKNSG 135
           +L+  R  W++L   G
Sbjct: 117 ALDHARGEWKALTGQG 132


>gi|83593535|ref|YP_427287.1| DNA polymerase III subunit chi [Rhodospirillum rubrum ATCC 11170]
 gi|83576449|gb|ABC23000.1| DNA polymerase III, chi subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 160

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M    FY   ++  E  L  LL    +  +R  V  GS    D LN  LWT+    +LPH
Sbjct: 1   MSRFDFYHLQRSTLEDALPRLLARVRKGDQRAVVMAGSPERVDGLNSLLWTFDAGSWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +G   + QPV LTI   N N + +  L D   +   D   + +++ + +  D  
Sbjct: 61  GTARDGDG---ADQPVWLTIDEENPNGAEVLVLTDG--VWPSDPARFARILLLFDGGDDS 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R HW++++ +G+ 
Sbjct: 116 AVARARGHWKAMRENGHE 133


>gi|294678218|ref|YP_003578833.1| DNA polymerase III subunit chi [Rhodobacter capsulatus SB 1003]
 gi|294477038|gb|ADE86426.1| DNA polymerase III, chi subunit [Rhodobacter capsulatus SB 1003]
          Length = 150

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 4/139 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  L ++  ++  E  +  LL     +G RV ++  S    D L++ LW   ++ FLPHG
Sbjct: 1   MPALFYHVTQSPVEGVVETLLTRALAQGWRVELRGVSPERMDWLDQKLWLGPEEDFLPHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +     G   + QPVLLT S            +D A +   +V   E+V  + +  D+ +
Sbjct: 61  LA---GGPHDALQPVLLTTSPR-PEGRQAVMTLDGAEVTPAEVAAAERVWILFDGRDETA 116

Query: 121 LEWGRAHWRSLKNSGYAPD 139
           +   R  W++L  +G A  
Sbjct: 117 VARARDQWKALTGAGTAAQ 135


>gi|159043741|ref|YP_001532535.1| DNA polymerase III subunit chi [Dinoroseobacter shibae DFL 12]
 gi|157911501|gb|ABV92934.1| DNA polymerase III chi subunit HolC [Dinoroseobacter shibae DFL 12]
          Length = 151

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   +  L VLL+     G RV V+  S    + L+E LW   ++GFLPH
Sbjct: 1   MGAVYFYHMTRTPLDATLPVLLEKSLAAGWRVLVRGTSGAELERLDELLWLRPEEGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+  GD     + QPVLL + +  A        VD A +   +V    +   + +  D  
Sbjct: 61  GIAGGDR---DADQPVLLGVDAPLA-GREALICVDGAQVDPAEVAGLARASLLFDGGDAA 116

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           ++E  R  WR++  +G +  
Sbjct: 117 AVEAARGQWRAVTGAGLSAQ 136


>gi|254294284|ref|YP_003060307.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814]
 gi|254042815|gb|ACT59610.1| DNA polymerase III chi subunit HolC [Hirschia baltica ATCC 49814]
          Length = 169

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
               FY   +   E  L  LL+   +K  RV +  G       L+  LWTWK D FLPH 
Sbjct: 16  GEWWFYHLERTSLEEALGPLLEKCLQKDWRVLI-VGDGDRLPKLDLGLWTWKADSFLPHA 74

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMH--IGDVDYYEKVVFIINTDDQ 118
              G +      QP+LL+ +   AN + I  L+D   +     D   Y + + + + DD 
Sbjct: 75  RLGGRDEIDPMAQPILLSNTPEPANKADIIVLLDGKRLPNEPDDATQYIRCMVVFDGDDF 134

Query: 119 GSLEWGRAHWRSLKNSG 135
            + +  R+ ++  K++G
Sbjct: 135 NARDTARSQFKGAKDAG 151


>gi|329850481|ref|ZP_08265326.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840796|gb|EGF90367.1| DNA polymerase III chi subunit, HolC family protein [Asticcacaulis
           biprosthecum C19]
          Length = 149

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY  +    +  L  LL+   +KG R  V    +    +LN+ LW+++ D FL H
Sbjct: 1   MPDIWFYHLETTPLDQALPDLLEKVAQKGWRAYVHGHEDDKISALNDRLWSYRPDSFLAH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +     D    QPVLL  S   AN   +   V  +   + DV   E+ + + + +D  
Sbjct: 61  GRE---GDDLEGHQPVLLGTSGRMANKPQVYLSV--SPTDLPDVSGLERCLIVFDGNDAE 115

Query: 120 SLEWGRAHWRSLKNSG 135
            L W R  W+ LK +G
Sbjct: 116 HLTWARGQWKQLKATG 131


>gi|114328867|ref|YP_746024.1| DNA polymerase III subunit chi [Granulibacter bethesdensis CGDNIH1]
 gi|114317041|gb|ABI63101.1| DNA polymerase III, chi subunit [Granulibacter bethesdensis
           CGDNIH1]
          Length = 149

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY       E  L  LL      G+R  V CG      +L+  LW      +LPH
Sbjct: 1   MTEIGFYHLTRTGPEQALPQLLGRTLAAGERAMVLCGGPERVAALDTTLWLCPNPDWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G     +   ++ QP+ LT       N +   FL+D  +     +  Y +V  + +  ++
Sbjct: 61  GTARSGD---AALQPIWLTAQDEAAPNGAHFLFLIDGTAS--ERLHDYTRVFDLFDGSNE 115

Query: 119 GSLEWGRAHWRSLKNSGYA 137
            ++   R  W+  KN+G+ 
Sbjct: 116 DAVAAARLRWKQAKNAGHT 134


>gi|119383655|ref|YP_914711.1| DNA polymerase III subunit chi [Paracoccus denitrificans PD1222]
 gi|119373422|gb|ABL69015.1| DNA polymerase III chi subunit, HolC [Paracoccus denitrificans
           PD1222]
          Length = 149

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M + LFY   ++     L +L+    + G RV ++      + +L+E LW   ++GFLPH
Sbjct: 1   MGSALFYHLTRSGPAQLLPMLIGKSLQAGWRVELRGRDRARQVALDEALWL--REGFLPH 58

Query: 60  GVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G+     G   + QPVLLT+     AN +     +D A +   +    E+   I + +D 
Sbjct: 59  GLA---GGPHDARQPVLLTVEGQAAANAARCLIALDGAEVSGAECLALERACLIFDGNDP 115

Query: 119 GSLEWGRAHWRSLKNSGYAPD 139
            +LE  RA WR+LK    A +
Sbjct: 116 EALERARAQWRALKAEDVAAE 136


>gi|218516793|ref|ZP_03513633.1| DNA polymerase III subunit chi [Rhizobium etli 8C-3]
          Length = 104

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 6/109 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY   +   E  L  L+    E+G RV+VQ      RD+L+ +LWT++++ FLPH
Sbjct: 1   MTDILFYHLTETRLEDALPPLIDKSVERGWRVAVQTREPARRDALDAHLWTYREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEK 108
           G    DE DF+  QPVLLT++S NAN +T+RF+VD A     D   YE+
Sbjct: 61  GT---DEADFAESQPVLLTVTSDNANAATVRFIVDGAEPPPADP--YER 104


>gi|332558332|ref|ZP_08412654.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N]
 gi|332276044|gb|EGJ21359.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides WS8N]
          Length = 152

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  ++FY   ++  E  L +LL     +G RV ++       ++L+  LW   +DGFLPH
Sbjct: 1   MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRVRLEALDLALWRVPEDGFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G++    G   + QPVLL   ++  N +    L+D A+    +    E+V  + +  D+ 
Sbjct: 61  GME---GGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEA 116

Query: 120 SLEWGRAHWRSLKNSG 135
            L   R  W++L  +G
Sbjct: 117 ELGRARGQWKALTGAG 132


>gi|221639313|ref|YP_002525575.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides KD131]
 gi|221160094|gb|ACM01074.1| DNA polymerase III chi subunit [Rhodobacter sphaeroides KD131]
          Length = 162

 Score =  149 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
             ++FY   ++  E  L +LL     +G RV ++       ++L+  LW   ++GFLPHG
Sbjct: 12  GVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRARLEALDLALWRVPEEGFLPHG 71

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           ++    G   + QPVLL   ++  N +    L+D A+    +    E+V  + +  D+  
Sbjct: 72  ME---GGPHDAVQPVLLGTGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEAE 127

Query: 121 LEWGRAHWRSLKNSG 135
           L   R  W++L  +G
Sbjct: 128 LGRARGQWKALTGAG 142


>gi|258541817|ref|YP_003187250.1| DNA polymerase III subunit chi [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632895|dbj|BAH98870.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635952|dbj|BAI01921.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639007|dbj|BAI04969.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642061|dbj|BAI08016.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645116|dbj|BAI11064.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648171|dbj|BAI14112.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651224|dbj|BAI17158.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654215|dbj|BAI20142.1| DNA polymerase III chi subunit HolC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 148

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +      L  LL      G++ +V C S+ + D L++ LW      +LPH
Sbjct: 1   MTQIGFYHLTRTSVTEALPKLLARTLASGQKAAVWCASKPMLDDLDKALWKVTTPTWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +     D    QP+ L++     N +   FL++  S    D+  +E+V  + +  D+ 
Sbjct: 61  GREGIACPD---LQPIWLSMGEDTPNNARFLFLLENRS--FPDLAAFERVFDLFDGHDEE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W + K +G+ 
Sbjct: 116 AVAAARTRWSAAKAAGHE 133


>gi|329114406|ref|ZP_08243168.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001]
 gi|326696482|gb|EGE48161.1| DNA Polymerase III Subunit Chi [Acetobacter pomorum DM001]
          Length = 148

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +      L  LL      G++ +V C S+ + D L++ LW      +LPH
Sbjct: 1   MTQIGFYHLTRTSVTEALPKLLARTLASGQKAAVWCASKPMLDDLDKTLWKVTTPTWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G +     D    QP+ L++     N +   FL++  S    D+  +E+V  + +  D+ 
Sbjct: 61  GREGIACPD---LQPIWLSMGEDAPNAARFLFLLENRS--FPDLADFERVFDLFDGHDEE 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W + K +G+ 
Sbjct: 116 AVAAARTRWSAAKAAGHE 133


>gi|126462310|ref|YP_001043424.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17029]
 gi|126103974|gb|ABN76652.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC
           17029]
          Length = 148

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 5   LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           +FY   ++  E  L +LL     +G RV ++       ++L+  LW   +DGFLPHG++ 
Sbjct: 1   MFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRARLEALDLALWRVPEDGFLPHGME- 59

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
              G   + QPVLL I ++  N +    L+D A+    +    E+V  + +  D+  L  
Sbjct: 60  --GGPHDAAQPVLLGIGAIG-NGAQALMLLDGAATEAAEAAPLERVWILFDGLDEVELAR 116

Query: 124 GRAHWRSLKNSG 135
            R  W++L  +G
Sbjct: 117 ARGQWKALTGAG 128


>gi|163792840|ref|ZP_02186816.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199]
 gi|159181486|gb|EDP65998.1| DNA polymerase III, chi subunit [alpha proteobacterium BAL199]
          Length = 149

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY       E  L  LL+   + G+R  V  GS+    +LN  LWT++   +LPH
Sbjct: 1   MAEIGFYHLTATPLERALPKLLERTLDTGQRAVVLAGSDERVQALNGLLWTYEDRSWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     +  F   QP+ L+    N N +   FL D   + I D+  + +V  + +  D  
Sbjct: 61  GSS---KDGFDEDQPIWLSAVEGNPNGAAFLFLTDG--VTIDDLTAWSRVFDLFDGRDDA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W++ ++ G++
Sbjct: 116 AVAAARTRWKAARDGGHS 133


>gi|114798143|ref|YP_760967.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC
           15444]
 gi|114738317|gb|ABI76442.1| putative DNA polymerase III chi subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 156

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 2   RTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
               FY   ++  E     LLQ   E G RV            L+  LWT+    FLPHG
Sbjct: 6   PEWWFYHLSRSALEEAAAPLLQKCLEVGWRVLAVSPRAERLAKLDAVLWTFDDASFLPHG 65

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                  D  + QPVLL+    NAN++    L+D     +     +++ + +    D G+
Sbjct: 66  QADAPGLDV-ARQPVLLSAKLTNANSADALMLMDGVEAPVDV--AFKRCMVMFEDADTGT 122

Query: 121 LEWGRAHWRSLKNSG 135
               RA +++ K++G
Sbjct: 123 RNKARAQFKAAKDAG 137


>gi|83945298|ref|ZP_00957647.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633]
 gi|83851468|gb|EAP89324.1| DNA polymerase III subunit chi [Oceanicaulis alexandrii HTCC2633]
          Length = 149

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 6/121 (4%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  L FY  +N   +  L  LL    E+G R  V    E   D L+ +LWT++++ FLPH
Sbjct: 1   MAELWFYHLENASVDEALPELLTKLMERGGRAVVCSQEETRLDHLDSHLWTFREESFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G     + +    QP++L+  + N N++++ F +D A    GDV  +++VV +    D+ 
Sbjct: 61  GRA---DAEHVEHQPIVLSDRTDNPNSASMLFCLDGAD--PGDVSAWDRVVVMFEASDET 115

Query: 120 S 120
           S
Sbjct: 116 S 116


>gi|146277170|ref|YP_001167329.1| DNA polymerase III subunit chi [Rhodobacter sphaeroides ATCC 17025]
 gi|145555411|gb|ABP70024.1| DNA polymerase III chi subunit, HolC [Rhodobacter sphaeroides ATCC
           17025]
          Length = 158

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 5   LFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           +FY   ++  E  L +LL     +G RV ++       ++L+  LW   +DGFLPHG++ 
Sbjct: 1   MFYHLTRSSAEDTLRLLLPRALAQGWRVMLRGTDRGRLEALDLALWRVPEDGFLPHGME- 59

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
              G   + QPVLL   ++  N +    L+D A     +    E+V  + +  D+G L  
Sbjct: 60  --GGPQDAAQPVLLGTGAIG-NGAQALMLLDGAETDAAEAGPLERVWILFDGLDEGQLVH 116

Query: 124 GRAHWRSLKNSG 135
            R  W++L  +G
Sbjct: 117 ARGQWKALTGAG 128


>gi|162149088|ref|YP_001603549.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545169|ref|YP_002277398.1| DNA polymerase III subunit chi [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787665|emb|CAP57261.1| putative DNA polymerase III [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209532846|gb|ACI52783.1| DNA polymerase III chi subunit HolC [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 148

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL    + G+R  ++CG      +++E LW      +LPH
Sbjct: 1   MAEIGFYHLTRTPVEQALPALLGRTLDAGRRAVLRCGDAARVKAMDEALWQSADPVWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G   + QP+ LT      N +T  F +D   +   D   +E+V  + +  D  
Sbjct: 61  GSAAMGHG---ALQPIWLTDGPDVPNGATYLFAIDG--VVCPDAGTFERVFDLFDGSDAD 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
           ++   R  W + + +G+ 
Sbjct: 116 AVAAARRRWVTCREAGHT 133


>gi|218682145|ref|ZP_03529746.1| DNA polymerase III subunit chi [Rhizobium etli CIAT 894]
          Length = 102

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 63/91 (69%), Gaps = 5/91 (5%)

Query: 47  YLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY 106
           +LWT++++ FLPHG+   DEGDF+  QPVLLT++S NAN +T+RF++D A      V+ Y
Sbjct: 1   HLWTFREESFLPHGI---DEGDFAESQPVLLTVTSGNANAATVRFIIDGAEPPP--VEAY 55

Query: 107 EKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           E++VF+ +  DQ  LE  RA W+ LK  G+ 
Sbjct: 56  ERIVFMFDGHDQEQLEAARAQWKKLKGEGHN 86


>gi|296535102|ref|ZP_06897348.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957]
 gi|296264571|gb|EFH10950.1| DNA polymerase III subunit chi [Roseomonas cervicalis ATCC 49957]
          Length = 153

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   +   E  L  LL      G R  V+ G      SL+  LW  +   +LPH
Sbjct: 1   MSEIGFYHLTRTPLEAALPKLLGRVLSLGGRAVVKLGDAARLASLDASLWLCQDPDWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G     +   +  QP+ LT+     N +   FL D A      +  +E+V  + +  D+
Sbjct: 61  GSAASGQ---AELQPIWLTLQDEAPNGARYLFLADGAES--AQLGDFERVFDLFDGQDE 114


>gi|58038767|ref|YP_190731.1| DNA polymerase III subunit chi [Gluconobacter oxydans 621H]
 gi|58001181|gb|AAW60075.1| DNA polymerase III, chi subunit [Gluconobacter oxydans 621H]
          Length = 147

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY   +   E  L  LL    + G+R  V+C       +L+  LW  +   +LPHG 
Sbjct: 2   DIGFYHLTRTPLEEALPALLGRTLDAGERAVVRCPDAAAVMALDAALWACRDPVWLPHGT 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +  QP+ LT      N +   F VD A     +   + ++  + +  +  S+
Sbjct: 62  AKSG---HAVRQPIWLTEGEDVPNEARFLFRVDGAGS--DEFAPFTRIFDLFDGGNPQSV 116

Query: 122 EWGRAHWRSLKNSGYA 137
           +  R  W ++K+ G+ 
Sbjct: 117 QRARQRWVAMKSFGHN 132


>gi|84516311|ref|ZP_01003671.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis
           SKA53]
 gi|84510007|gb|EAQ06464.1| DNA polymerase III, chi subunit, putative [Loktanella vestfoldensis
           SKA53]
          Length = 156

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%)

Query: 1   MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY  +    E  L +LL     +G RV V+     +   L+  LW    D FLPH
Sbjct: 1   MGAVFFYELQGAPLETTLPMLLDKARGQGWRVLVRGTDPALLAQLDAALWQGPVDHFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G+     G   + QP+LL    L A        V  A++   +     +   + ++  + 
Sbjct: 61  GLA---GGPHDADQPILL--GDLPAAGFACVMAVGGAAVSAEEALLLARACILFDSA-EH 114

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
           +    R  W++L ++G A  
Sbjct: 115 AKAQARLQWKTLTDAGIAAQ 134


>gi|124267130|ref|YP_001021134.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1]
 gi|124259905|gb|ABM94899.1| DNA polymerase III, chi subunit [Methylibium petroleiphilum PM1]
          Length = 144

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 1/137 (0%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D   +   LL   Y++G RV+V   S      L+  LWT+    F+PH 
Sbjct: 1   MTEINFHHGAADPLAHACRLLTKAYQRGARVAVTASSSERLAQLDVMLWTYDPLAFVPHA 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                        P  + +    A+      LV+         + +E++  I+   D   
Sbjct: 61  RLRAGAAPAERLAPTPIWLLDRAADAPHHEVLVNLGPEVPAGFESFERLFEIV-GKDDEE 119

Query: 121 LEWGRAHWRSLKNSGYA 137
              GR  WR  ++ GY 
Sbjct: 120 RRAGRQRWRYFESRGYE 136


>gi|294084198|ref|YP_003550956.1| DNA polymerase III subunit chi [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663771|gb|ADE38872.1| DNA polymerase III, chi subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 150

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   + D E  LL+LL+     GK+  + C       +L+  LWT + D +  H
Sbjct: 1   MSKIDFYHLTQTDMETVLLMLLKKTLAAGKKALILCPQPA-ASALDTDLWTREPDSWFAH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSL-NANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G+D  D  D +    + ++     N   +   FL+  +     ++  +E+V  + +   +
Sbjct: 60  GLDDADGQDIAK---IWISTDMAVNPIKAEFVFLLHGS--VPAEISQFERVFNLFDGRSE 114

Query: 119 GSLEWGRAHWRSLKNSG 135
             ++  R  W+S  + G
Sbjct: 115 AQVQHARIQWKSWADLG 131


>gi|288940946|ref|YP_003443186.1| DNA polymerase III subunit chi HolC [Allochromatium vinosum DSM
           180]
 gi|288896318|gb|ADC62154.1| DNA polymerase III chi subunit HolC [Allochromatium vinosum DSM
           180]
          Length = 143

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY  + D   +       L++    +  RV + C        L+  LWT +++ F
Sbjct: 1   MTRVDFYSLEPDSRGDRFILACRLVERIRAQDLRVLILCPDREEARHLDRLLWTMRQESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG+    + D     P+L+++   + +      L++ +      ++ +E++  +++ +
Sbjct: 61  LPHGLVGTVDTD---LTPILISLDGASEHG--CPVLLNLSRALPAGLERFERLCDLVD-N 114

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D    + GR  +R+ +  GY PD
Sbjct: 115 DPAVRQAGRERFRAYRERGYEPD 137


>gi|289209276|ref|YP_003461342.1| DNA polymerase III subunit chi [Thioalkalivibrio sp. K90mix]
 gi|288944907|gb|ADC72606.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. K90mix]
          Length = 139

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY  ++            L +    +G RV +  GS  +  +L+E+LWT++   F
Sbjct: 1   MTHVSFYLLQDPAPEARLRFTCRLAKKASGQGHRVHIHTGSPELTRTLDEWLWTFEDTTF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH  DV +         V +++   +A +     L++ A+        +E+V  I+   
Sbjct: 61  LPHSTDVRNTD-------VPVSLHEAHAPSDRCDVLINLAADVPEYCGRFERVADIVGG- 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           ++   E GRA +R  K  GY 
Sbjct: 113 EESEREAGRARYRYFKERGYP 133


>gi|330993936|ref|ZP_08317866.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1]
 gi|329758882|gb|EGG75396.1| DNA polymerase III subunit chi [Gluconacetobacter sp. SXCC-1]
          Length = 148

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FY   ++     L  LL       +R  ++C +      ++E LW      +LPH
Sbjct: 1   MAQIDFYHLTRSTALAVLPELLGRVLASDRRAVIRCATAARAQEIDEGLWRATSPLWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           G      G    +QP+ LT      N +T  F++D   + + D+  +E+V  + +  D+
Sbjct: 61  GTQAMGHGP---WQPIWLTAGDDVPNGATFLFVLDG--VEVSDLSPFERVFEVFDGHDE 114


>gi|117925960|ref|YP_866577.1| DNA polymerase III subunit chi [Magnetococcus sp. MC-1]
 gi|117609716|gb|ABK45171.1| DNA polymerase III, chi subunit [Magnetococcus sp. MC-1]
          Length = 157

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 4   LLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY+   D  E  LL +L   Y  G RV +     +    L+E+LW    D FLPH   
Sbjct: 11  VRFYQLATDSRERALLKILNKVYGMGLRVCIVVEDRQQAQGLDEHLWRHPPDSFLPHATS 70

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
           V     F   QP+L++   ++ N +T+  ++    + + ++D ++ VV  +  DD  +  
Sbjct: 71  V---DPFPEAQPILISEQPVDPNGATVVVML--TPVPLENLDQFDTVVDFVP-DDPQAKR 124

Query: 123 WGRAHWRSLKNSGY 136
             R  ++  K++  
Sbjct: 125 ASRLRYKHYKDAQC 138


>gi|319944266|ref|ZP_08018542.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742561|gb|EFV94972.1| DNA-directed DNA polymerase III chi subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 146

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 4/138 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L++  ++ G +V V C   R   S +  LW +    F+PH 
Sbjct: 1   MTQVDFHFNVPDTGRYGCRLVRKAWQAGHKVVVYCEDTRRLASFDRLLWEFAPLSFIPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V      +   PVLLT S  +   S  + LV+           Y +VV ++   D  S
Sbjct: 60  --VSVRHPLAERTPVLLTASDADVPASHRQVLVNLGERMPPAFADYARVVELV-GTDAQS 116

Query: 121 LEWGRAHWRSLKNSGYAP 138
            +  RA +RS +  GY P
Sbjct: 117 RQAARARFRSYREQGYTP 134


>gi|304321942|ref|YP_003855585.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503]
 gi|303300844|gb|ADM10443.1| DNA polymerase III subunit chi [Parvularcula bermudensis HTCC2503]
          Length = 145

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +LFY  +    E  L VLL+    +  R  V+   E      ++ LWT+  D FLPH
Sbjct: 1   MTEILFYHCERARPEAVLPVLLERSLARDWRAVVRLPDEAAVRYWDDALWTYADDSFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           G      G  ++ QP+ LT          I F +  A       +  E++V + + D
Sbjct: 61  G-----AGPPAADQPIWLTADETLPPGRQILFSL-VAEGVEKGGEGLERIVLLFDED 111


>gi|189184262|ref|YP_001938047.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str.
           Ikeda]
 gi|189181033|dbj|BAG40813.1| DNA polymerase III chi subunit HolC [Orientia tsutsugamushi str.
           Ikeda]
          Length = 169

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 12/144 (8%)

Query: 4   LLFY-RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY      +   L  LL+  Y            ++  +++N  LW++    F+PHG  
Sbjct: 5   INFYCTLTELFNQTLCKLLEKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCS 64

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEA--------SMHIGDVDYYEKVVFIIN 114
           +  E    S QP+ +T +  N N + I  LV  +          +I     +E+++ I  
Sbjct: 65  IDPE---PSSQPIYITTNYENPNQAKILVLVILSYNCCNADYDNNISYFQQFERILIIFK 121

Query: 115 TDDQGSLEWGRAHWRSLKNSGYAP 138
            +D   +++   ++  LK  GY P
Sbjct: 122 ENDNKLIDYMNNYYHRLKQDGYLP 145


>gi|95929634|ref|ZP_01312376.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134331|gb|EAT15988.1| DNA polymerase III chi subunit, HolC [Desulfuromonas acetoxidans
           DSM 684]
          Length = 139

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 4   LLFYRFKNDWEYNLLVLL-QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + F +     +   L LL ++ + + KRV +    +    +L+ ++WTW K  FLPH   
Sbjct: 5   VEFIKLNKPEKAKCLCLLAEEFFAQSKRVLILVEDDNQALTLDRFMWTWNKGSFLPH--- 61

Query: 63  VGDEGDFSSF-QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
           V D G      + + +    LN+N +++  L+      +  +  ++ V+    T DQ  +
Sbjct: 62  VWDNGAVECHEEAIAIGTRELNSNGASV--LIAARPCSVEFMRQFKHVIEFAETYDQALV 119

Query: 122 EWGRAHWRSLKNSGYAP 138
           E  R  +R+ +  G  P
Sbjct: 120 EAARGRFRAWRECGCEP 136


>gi|74316597|ref|YP_314337.1| DNA polymerase III subunit chi [Thiobacillus denitrificans ATCC
           25259]
 gi|74056092|gb|AAZ96532.1| putative DNA polymerase III chi subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 143

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  ++FY F  D       +    Y +GK+V +      V  +++  LWT    GF+PH 
Sbjct: 1   MTEIIFYTFAEDRLDVARRVAAKAYGQGKQVMIYAPDAAVAGAVDRMLWTTPALGFVPHA 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
               D    ++  PVL+   +     + +   +D A         +E++V I+   D   
Sbjct: 61  R---DSDALAAETPVLIGADAGALRHADVMINLDSA--QPPAFGRFERLVEIV-GTDDAE 114

Query: 121 LEWGRAHWRSLKNSGYA 137
            E GRA +R  ++ GYA
Sbjct: 115 REQGRARYRFYQSRGYA 131


>gi|56552204|ref|YP_163043.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543778|gb|AAV89932.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 148

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 4   LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY   +   E  L  + +      K++ V    ++     ++YLW ++   FLPHG  
Sbjct: 5   VDFYHLLSAKLENILPRIAEKTLSSDKKLLVVVPDDQQARYWDDYLWRYEDTSFLPHGRV 64

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
            G +    +  PVL++ +    N ++   L D   +   +   +E+V +     D+ +++
Sbjct: 65  GGGD---EAEHPVLISTAMEAVNQASYIALTDG--LWRAEALNFERVFYFF---DEIAVQ 116

Query: 123 WGRAHWRSLKN 133
             R  WRSLKN
Sbjct: 117 QARQAWRSLKN 127


>gi|241761722|ref|ZP_04759809.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374030|gb|EER63563.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 148

 Score =  105 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 4   LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY   +   E  L  + +      K++ V    ++     ++YLW ++   FLPHG  
Sbjct: 5   VDFYHLLSAKLENILPRIAEKTLSSDKKLLVVVPDDQQARYWDDYLWRYEDTSFLPHGRV 64

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
            G +    +  PVL++ +    N ++   L D   +   +   +E+V +     D+ +++
Sbjct: 65  GGGD---EAEHPVLISTAMEAVNQASYIALTDG--LWRAEALNFERVFYFF---DEIAVQ 116

Query: 123 WGRAHWRSLKN 133
             R  WRSLKN
Sbjct: 117 QARQAWRSLKN 127


>gi|260752287|ref|YP_003225180.1| DNA polymerase III subunit chi [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551650|gb|ACV74596.1| DNA polymerase III chi subunit HolC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 148

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 4   LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY   +   E  L  + +      K++ V    ++     ++YLW ++   FLPHG  
Sbjct: 5   VDFYHLLSAKLENILPRIAEKTLSSDKKLLVIVPDDQQARYWDDYLWRYEDTSFLPHGRV 64

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
            G +    +  PVL++ +    N ++   L D   +   +   +E+V +     D+ +++
Sbjct: 65  GGGD---EAEHPVLISTAMEAVNQASYIALTDG--LWRAEALNFERVFYFF---DEIAVQ 116

Query: 123 WGRAHWRSLKN 133
             R  WRSLKN
Sbjct: 117 QARQAWRSLKN 127


>gi|167585750|ref|ZP_02378138.1| DNA polymerase III chi subunit HolC [Burkholderia ubonensis Bu]
          Length = 138

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++L      A     + L++  +        +E+++ ++  ++   
Sbjct: 59  --CGIDSQHAADTPIVLAADLDKA--PHHQVLLNLGAAVPAQFARFERLLEVV-GNEPAE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LAAGRERYRFYRDRGYA 130


>gi|77163822|ref|YP_342347.1| DNA polymerase III chi subunit, HolC [Nitrosococcus oceani ATCC
           19707]
 gi|254436187|ref|ZP_05049694.1| DNA polymerase III, chi subunit superfamily [Nitrosococcus oceani
           AFC27]
 gi|76882136|gb|ABA56817.1| DNA polymerase III chi subunit, HolC [Nitrosococcus oceani ATCC
           19707]
 gi|207089298|gb|EDZ66570.1| DNA polymerase III, chi subunit superfamily [Nitrosococcus oceani
           AFC27]
          Length = 143

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 10/143 (6%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L++  Y  G +V +Q   +     +++ LWT+++  F
Sbjct: 1   MTKVDFYLLTSRQPQASKRFTCKLIEKVYRLGHQVYIQVEDQAQAQEMDDLLWTFRQGSF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +   +E   +   PVL+           +  L++  +        +++V  +I   
Sbjct: 61  VPHALVNSEEATGT---PVLI--GYDGEPGGKLELLINLGAEVPAFFSRFQRVAEVI-GP 114

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D+     GR  +R  ++ G + +
Sbjct: 115 DETHRHAGRQRYRYYRDHGCSLE 137


>gi|148261397|ref|YP_001235524.1| DNA polymerase III subunit chi [Acidiphilium cryptum JF-5]
 gi|326404886|ref|YP_004284968.1| putative DNA polymerase III chi subunit [Acidiphilium multivorum
           AIU301]
 gi|146403078|gb|ABQ31605.1| DNA polymerase III chi subunit, HolC [Acidiphilium cryptum JF-5]
 gi|325051748|dbj|BAJ82086.1| putative DNA polymerase III chi subunit [Acidiphilium multivorum
           AIU301]
          Length = 155

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  L FY       E  L  LL      G R  V+       ++L+  LW      +LPH
Sbjct: 1   MAQLGFYHLTRTGLEAALPALLARTLAAGARAVVRGTDPARIEALDAALWLAPGVDWLPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           G      G     QPV LT      N +   FLVD A+    D+  +E+V  + + +D  
Sbjct: 61  GTAAMGHGP---DQPVWLTTGDDVPNDARFLFLVDGAT---ADLARFERVFDLFDGNDPD 114


>gi|300113103|ref|YP_003759678.1| DNA polymerase III subunit HolC [Nitrosococcus watsonii C-113]
 gi|299539040|gb|ADJ27357.1| DNA polymerase III chi subunit HolC [Nitrosococcus watsonii C-113]
          Length = 143

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 10/140 (7%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  Y  G ++ +Q  ++     ++E LWT+++  F
Sbjct: 1   MTKVDFYLLTSHQPQASKRFACKLTEKAYRLGHQIYIQTENQAQAQEMDELLWTFRQGSF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +   +E D S   PVL+           +  L++  +        +++V  II   
Sbjct: 61  VPHALINSEEADES---PVLI--GYEREPEGKLELLINLCAEVPAFFSRFQRVAEII-GQ 114

Query: 117 DQGSLEWGRAHWRSLKNSGY 136
           D+     GR  +R  ++ G 
Sbjct: 115 DENHRHAGRQRYRYYRDHGC 134


>gi|292493014|ref|YP_003528453.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4]
 gi|291581609|gb|ADE16066.1| DNA polymerase III chi subunit HolC [Nitrosococcus halophilus Nc4]
          Length = 143

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +      E     L +  Y  G R+ +Q   +     +++ LWT+++  F
Sbjct: 1   MAKVDFYLLTSRQPQIRERFACKLTEKAYRLGHRIYIQVEDQEQAQKMDDLLWTFRQGSF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +   +E   +S  PVL+         S +  L++  +       ++ +V  II+  
Sbjct: 61  VPHALMNTEE---ASETPVLIGYGGEPE--SEMDLLINLCAEVPRFFSHFPRVAEIID-Q 114

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D+ +   GR  +R  ++ G + +
Sbjct: 115 DENNRHAGRQRYRDYRDQGCSLE 137


>gi|311694205|gb|ADP97078.1| DNA polymerase III chi subunit, HolC [marine bacterium HP15]
          Length = 170

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 9/138 (6%)

Query: 5   LFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
            F+    +           L+   +++G RV V C + +  + L++ LW +  D F+PH 
Sbjct: 30  WFHILAQNTPAARNLHAAKLVDKAWQQGDRVCVVCDTMQHAEELDDLLWNFSPDAFIPHS 89

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           V V D     S    +L       +  T+  L   ++    D D ++++  + + +D   
Sbjct: 90  V-VPDSATTCSDPVGILLCPPAPEDWDTVIIL---SATLPADADRFKRLALVAH-NDPNV 144

Query: 121 LEWGRAHWRSLKNSGYAP 138
           L   R+H++ L+  G  P
Sbjct: 145 LNQARSHFKQLRALGIEP 162


>gi|161524008|ref|YP_001579020.1| DNA polymerase III subunit chi [Burkholderia multivorans ATCC
           17616]
 gi|189351231|ref|YP_001946859.1| DNA polymerase III subunit chi [Burkholderia multivorans ATCC
           17616]
 gi|221199309|ref|ZP_03572353.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2M]
 gi|221205789|ref|ZP_03578804.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2]
 gi|221211526|ref|ZP_03584505.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD1]
 gi|160341437|gb|ABX14523.1| DNA polymerase III chi subunit HolC [Burkholderia multivorans ATCC
           17616]
 gi|189335253|dbj|BAG44323.1| DNA polymerase III chi subunit [Burkholderia multivorans ATCC
           17616]
 gi|221168887|gb|EEE01355.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD1]
 gi|221174627|gb|EEE07059.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2]
 gi|221180594|gb|EEE12997.1| DNA polymerase III, chi subunit [Burkholderia multivorans CGD2M]
          Length = 138

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVVA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSAHAAGTPIVLAADLDKAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LAAGRERYRFYRDRGYA 130


>gi|194290550|ref|YP_002006457.1| DNA polymerase III subunit chi [Cupriavidus taiwanensis LMG 19424]
 gi|193224385|emb|CAQ70396.1| DNA POLYMERASE III, CHI SUBUNIT [Cupriavidus taiwanensis LMG 19424]
          Length = 144

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L++  Y  G++V +          L+  LWT+    FLPH 
Sbjct: 1   MTRIDFHSNVPDVLGYVCRLVRKAYGAGQKVVIHGA-PAQLADLDARLWTFSALDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G E   ++  P+LL  ++        + L++ A         +E+++ ++   D  +
Sbjct: 59  --CGLESPNAAVTPILLAATTEGV--PHHQLLINLAEEAPAQFASFERLIEVVGAGD-AA 113

Query: 121 LEWGRAHWRSLKNSGYA 137
            E GR  +R  +  GY 
Sbjct: 114 REAGRQRYRFYRERGYP 130


>gi|82701878|ref|YP_411444.1| DNA polymerase III chi subunit, HolC [Nitrosospira multiformis ATCC
           25196]
 gi|82409943|gb|ABB74052.1| DNA polymerase III, chi subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 140

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    D  +    L+     KG +V +        + +++ LWT+    F+PH 
Sbjct: 1   MTEIDFYSGGGDRLHTACRLVATAVRKGFKVMIYAPDMATVEQIDKLLWTFSATDFIPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   + F PV L+ S  N     +  L++    +      + +++ I    D+ +
Sbjct: 60  --CQTDDKLAEFTPVTLSDSGRNPPHDDV--LLNLGPENPPFFSRFRRLIEIAGNTDEDT 115

Query: 121 LEWGRAHWRSLKNSGYA 137
            +  R  +R  ++ GY 
Sbjct: 116 -QAARKRYRFYQDRGYE 131


>gi|325527100|gb|EGD04515.1| DNA polymerase III subunit chi [Burkholderia sp. TJI49]
          Length = 138

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSAHAAGTPIVLAADLDRAPHHHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LAAGRERYRFYRDRGYA 130


>gi|220935309|ref|YP_002514208.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996619|gb|ACL73221.1| DNA polymerase III chi subunit HolC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 147

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L+   Y  G R+ V  GS  +   L++ LWT++   F
Sbjct: 1   MTRIDFYVLDDTDPGQRLRTACRLIGKAYGLGHRIHVHTGSRALSMQLDDLLWTFRDVSF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH V+        +  PV +       N   I  LV+  +        +E+V  I+N  
Sbjct: 61  IPHQVEGE-----DAECPVQICHDQEPQNAGDI--LVNLDTQVPLFFSRFERVAEIVN-Q 112

Query: 117 DQGSLEWGRAHWRSLKNSGY 136
           D    + GR  +R  K+ GY
Sbjct: 113 DPAIRDAGRERYRFYKDRGY 132


>gi|149927921|ref|ZP_01916171.1| DNA polymerase III subunit chi [Limnobacter sp. MED105]
 gi|149823360|gb|EDM82593.1| DNA polymerase III subunit chi [Limnobacter sp. MED105]
          Length = 140

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+   +D       L++  Y  G ++        V ++L++ LWT+ ++ FLPH 
Sbjct: 1   MTRIDFHLNVSDHLLYTCRLIRKAYGSGLKIVCYSTRPEVLENLDKLLWTFSEEDFLPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V       +  P++LT  + +   +    L++           +E++V I+   D+ +
Sbjct: 60  --VVSGHPGVADTPIVLTDKADDI--AHYDLLINLDEQWPPFFARFERLVEIV-GTDEDN 114

Query: 121 LEWGRAHWRSLKNSGYA 137
               R  ++  K  GY 
Sbjct: 115 KALARQRYKFYKERGYP 131


>gi|254491661|ref|ZP_05104840.1| DNA polymerase III, chi subunit superfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463139|gb|EEF79409.1| DNA polymerase III, chi subunit superfamily [Methylophaga
           thiooxydans DMS010]
          Length = 142

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY  K+      +     L +  Y +G +V +   +     +L+E LW  + + F
Sbjct: 1   MTRVSFYILKSTQFEKRQAFACRLAEKAYHQGHQVYIHTDNAEQSAALDEALWAIRPESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH V      D  +  PVL+           +  L++           +++V  +I+ +
Sbjct: 61  VPHEVI---NTDADNQSPVLIGHKDSTPPR-LMDVLINLTEQQPLFFSQFDRVAEVIDDN 116

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D    + GR  ++  K  GY  D
Sbjct: 117 DD-VKQAGRQRFQFYKQRGYELD 138


>gi|113868944|ref|YP_727433.1| DNA polymerase III subunit chi [Ralstonia eutropha H16]
 gi|113527720|emb|CAJ94065.1| DNA polymerase III chi subunit [Ralstonia eutropha H16]
          Length = 144

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L++  Y  G++V +          L+  LWT+    FLPH 
Sbjct: 1   MTRIDFHSNVPDVLGYVCRLVRKAYGAGQKVVIHGA-PAQLADLDARLWTFSALDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G E   ++  P+LL  ++        + L++ A         +E+++ ++   D  +
Sbjct: 59  --CGLESPNAAVTPILLAATTEGV--PHHQLLINLADQAPAQFASFERLIEVVGAGD-AA 113

Query: 121 LEWGRAHWRSLKNSGYA 137
            E GR  +R  +  GY 
Sbjct: 114 REAGRQRYRFYRERGYP 130


>gi|114330615|ref|YP_746837.1| DNA polymerase III chi subunit, HolC [Nitrosomonas eutropha C91]
 gi|114307629|gb|ABI58872.1| DNA polymerase III, chi subunit [Nitrosomonas eutropha C91]
          Length = 142

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    D       L     ++G +  V      + +  ++ LWT+    F+PH 
Sbjct: 1   MTQIDFYTGATDRLLIACRLCSKAVQQGLKTVVYIPDAELANRFDKLLWTFSPTSFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   +   PV+L         +    L++  +      +++++VV I++  +   
Sbjct: 60  --CQADDKLAGVTPVILNNQLEMPEVAYFDVLLNLDAAIPSGFEHFKRVVEIVDEIEDSK 117

Query: 121 LEWGRAHWRSLKNSGY 136
           L   R  +R  +  G+
Sbjct: 118 L-HARKRYRRYQELGH 132


>gi|148284078|ref|YP_001248168.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str.
           Boryong]
 gi|146739517|emb|CAM79223.1| DNA polymerase III chi subunit [Orientia tsutsugamushi str.
           Boryong]
          Length = 146

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y            ++  +++N  LW++    F+PHG     E    S QP+ +T + 
Sbjct: 2   EKCYSTSLNTITLVDEKKTEEAINNTLWSFSSTSFIPHGCSTDPE---PSSQPIYITTNY 58

Query: 82  LNANTSTIRFLVDEASMHI--------GDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
            N N + I  LV  +S                +E+++ I   +D   +++   ++  LK 
Sbjct: 59  ENPNQAKILVLVILSSNCCNANYDNNISYFQQFERILIIFKENDNKLIDYMNNYYHRLKQ 118

Query: 134 SGYAP 138
            GY P
Sbjct: 119 DGYLP 123


>gi|302879724|ref|YP_003848288.1| DNA polymerase III chi subunit HolC [Gallionella capsiferriformans
           ES-2]
 gi|302582513|gb|ADL56524.1| DNA polymerase III chi subunit HolC [Gallionella capsiferriformans
           ES-2]
          Length = 141

 Score = 99.1 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +D       L     + G R  +        + L++ LW +    F+PH 
Sbjct: 1   MTKVDFYTGSSDKLRTACQLSHKAMQHGLRTVISLPDAVSCEMLDKLLWQYPDTAFIPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +       PV L++     N      L+   +        +E+V+ II   D+  
Sbjct: 60  ----CDASSPDSAPVYLSLGEE--NFPHHDMLITLHNECTPFFSRFERVIEII-GTDEDD 112

Query: 121 LEWGRAHWRSLKNSGYA 137
              GR  ++  ++ GY 
Sbjct: 113 SRRGRERFKFYRDRGYE 129


>gi|302341449|ref|YP_003805978.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM
           2075]
 gi|301638062|gb|ADK83384.1| DNA polymerase III chi subunit HolC [Desulfarculus baarsii DSM
           2075]
          Length = 145

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 15  YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQP 74
             +  L    + +G RV +     R    L+  LWT+    F+PH +  G +    + +P
Sbjct: 17  EAVARLAAWHWRQGARVLILAADPRQAAGLDALLWTFDPASFVPHALAGGAD---QADEP 73

Query: 75  VLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134
           VL++    N N +++  +    +        +++V+ +I  +D   L   R  +R  ++ 
Sbjct: 74  VLISQEPANLNHASVLIMTKPPASPQAVPPGFQRVIVLIPLEDGPDLHACRDCFRLARDQ 133

Query: 135 GYAP 138
           G  P
Sbjct: 134 GLNP 137


>gi|270159213|ref|ZP_06187869.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968]
 gi|289165962|ref|YP_003456100.1| DNA polymerase III, chi subunit [Legionella longbeachae NSW150]
 gi|269987552|gb|EEZ93807.1| DNA polymerase III subunit chi [Legionella longbeachae D-4968]
 gi|288859135|emb|CBJ13064.1| putative DNA polymerase III, chi subunit [Legionella longbeachae
           NSW150]
          Length = 144

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 4   LLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY   N+           LL+  Y KG +V V C +++  + L+E LWT+K+D F+PH
Sbjct: 6   IDFYLLTNEQHNARWLLACRLLEKAYVKGHKVYVLCANKQDAEFLDELLWTFKEDSFIPH 65

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +                 I            L++ ++        +++++ I+  + + 
Sbjct: 66  HLQGEGPEPPPPI-----QIGYEREPRGFNDILLNLSNNIPSFYSKFKRIMEIV-LNSEA 119

Query: 120 SLEWGRAHWRSLKNSGYA 137
             E  RAH+RS K +G  
Sbjct: 120 EKEQSRAHYRSYKANGCE 137


>gi|119503289|ref|ZP_01625373.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2080]
 gi|119460935|gb|EAW42026.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2080]
          Length = 139

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYNLL----VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +      L     L+   + +G  + +    E   ++L++ LWT++   F
Sbjct: 1   MTRVDFYVVADASPGARLHVAARLVDKAHRQGHTLFIHTTDEAEAEALDDLLWTFRPGSF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +            PV+L        +     L++ A         +++V  ++ T 
Sbjct: 61  IPHQLASDSSEG-----PVVLGWGQE--PSGHNDVLINLALSQPAFFSRFQRVAEVV-TQ 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D  SLE  R+ WR  K+ GY 
Sbjct: 113 DATSLEAMRSAWRFYKDRGYP 133


>gi|120553892|ref|YP_958243.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8]
 gi|120323741|gb|ABM18056.1| DNA polymerase III chi subunit, HolC [Marinobacter aquaeolei VT8]
          Length = 169

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 5   LFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
            F+    +           L+   +++G RV V C +E     L++ LW +  + F+PH 
Sbjct: 29  WFHILAQNTHAARNLHAAKLVDKAWQQGDRVCVLCDTEEQALELDDLLWNFTPEAFIPHS 88

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +        S    +LL       +  T+  L   +S    D D Y ++  + + +D   
Sbjct: 89  IAKAATTPCSDPVGILL-YPPAAVDWDTVIVL---SSALPEDADQYRRLALVAH-NDPAV 143

Query: 121 LEWGRAHWRSLKNSGYAPDV 140
           L   R H++ L++ G    V
Sbjct: 144 LNQARGHYKQLRSLGIEARV 163


>gi|94497697|ref|ZP_01304265.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58]
 gi|94422914|gb|EAT07947.1| DNA polymerase III chi subunit, HolC [Sphingomonas sp. SKA58]
          Length = 145

 Score = 97.1 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY+  ++  E  L  +       G R+ V  G     D +++ LW    + FL HG 
Sbjct: 2   QVDFYQLSRDPVEQVLPAIAGRILAMGARLLVVAGEGDRLDRISQGLWAGPPESFLAHGR 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                  +   QP+LL+ +    N +    L D   +   +   +++  +  + D   ++
Sbjct: 62  TGEGGEAY---QPILLSDTCTAGNGARHIALADG--LWREEALGFDRAFYFFDAD---TI 113

Query: 122 EWGRAHWRSL-KNSGYAP 138
           +  RA WR+L K  G  P
Sbjct: 114 DGARASWRTLSKAEGVEP 131


>gi|119899195|ref|YP_934408.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119671608|emb|CAL95521.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 145

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 4/135 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    D       L+      G++V+V+     +   L+  LWT +   F+PH 
Sbjct: 1   MTKVQFYHNAPDQLALACELVAKAQAGGRQVAVRAADPAMARKLDLMLWTVEPLAFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V + G  +   PV +     +A       L + A+      + + + V  I    +  
Sbjct: 60  --VMNGGPLADETPVQIGAPGSDARWPHADILFNLAADLAPGFEGF-RTVVEIVGRSEAE 116

Query: 121 LEWGRAHWRSLKNSG 135
               RA W   K  G
Sbjct: 117 KAPARARWTQYKTRG 131


>gi|257095658|ref|YP_003169299.1| DNA polymerase III subunit chi HolC [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048182|gb|ACV37370.1| DNA polymerase III chi subunit HolC [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 141

 Score = 96.7 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +D       LL   + + K   V      V  +L+ +LW     GFLPH 
Sbjct: 1   MTQVFFYHGASDRIVATATLLGKAFAQKKAALVYAPDAEVAAALDRHLWMHPPTGFLPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V  +   +   PVL+             F  + A+        +  ++ ++       
Sbjct: 60  --VRSDSPLAGETPVLIASQLDVVPQDERLF--NLAAEVPPGFSRFASLIEVV-GHQDEE 114

Query: 121 LEWGRAHWRSLKNSGY 136
              GR   R  K+ GY
Sbjct: 115 RAAGRQRARFYKDRGY 130


>gi|94500492|ref|ZP_01307023.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65]
 gi|94427282|gb|EAT12261.1| DNA polymerase III chi subunit, HolC [Oceanobacter sp. RED65]
          Length = 142

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M ++ FY   +  +         L +  +++G+++ V    E+    L++ +W +K + F
Sbjct: 1   MTSIDFYILGHSQQQARLSFACRLAEKAFKEGRQIYVHAQDEQQAKQLDDLMWEYKPESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH +     G+ +S   V +      ++   +  L++  S        +++V+ I+   
Sbjct: 61  LPHQIV----GEQASQTQVEIGWQDHPSHHFDV--LINLVSPQPSFFSRFDRVLEIV-IQ 113

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D+ SL   RAH++  ++ GY 
Sbjct: 114 DETSLAQSRAHYKFYRDRGYE 134


>gi|110833355|ref|YP_692214.1| DNA polymerase III subunit chi [Alcanivorax borkumensis SK2]
 gi|110646466|emb|CAL15942.1| DNA polymerase III, chi subunit [Alcanivorax borkumensis SK2]
          Length = 148

 Score = 96.0 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLVLL----QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY      E     L         ++G++V V C +E     L+   W     GF
Sbjct: 10  MTEVTFYLSSKVGEGVRQALAWRIADKALKQGRQVYVHCQNEAHARQLDAQFWQSPPTGF 69

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH +    +       PVLL              L++ +         +++V  +I+  
Sbjct: 70  LPHALSSEGQA------PVLLGFGDD--PGHQHDVLINLSDGVPDFSSRFQRVAEMISG- 120

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D+   + GR  +R  ++ G+ 
Sbjct: 121 DEAERQQGRERFRFYRDRGFP 141


>gi|332530552|ref|ZP_08406490.1| DNA polymerase III subunit chi [Hylemonella gracilis ATCC 19624]
 gi|332039998|gb|EGI76386.1| DNA polymerase III subunit chi [Hylemonella gracilis ATCC 19624]
          Length = 151

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+    +G RV V      +   L+  LWT+ +  F+ H 
Sbjct: 1   MTEVAFHFNAPDKLAYACRLLRKAVMQGSRVVVTAP-AELLARLDVLLWTFSQTDFVAHV 59

Query: 61  VDVGDEGDFS------SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
                    +      +  PV+L   +   +    + L++  S        Y +V+ +++
Sbjct: 60  RLPMRHAPQAGMVTTLALTPVVLADDASAPDVPHRQVLLNLGSDMPRGFTTYARVIEVVS 119

Query: 115 TDDQGSLEWGRAHWRSLKNSGYA 137
            DD+   +  R  W+S    GYA
Sbjct: 120 LDDED-RQLARDRWKSYTAQGYA 141


>gi|317401897|gb|EFV82504.1| hypothetical protein HMPREF0005_00536 [Achromobacter xylosoxidans
           C54]
          Length = 153

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     D       +++  Y  G+R+ V C       + +  LW +    F+PH 
Sbjct: 1   MTRIDFAFGAPDRLRMACQVVRKRYLAGQRLVVYCKEGSRLAAFDRMLWAFDDTSFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISS-------LNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
             V      ++  PV+LT            A+     +L++         D +E+++ I+
Sbjct: 60  --VLANDPLAAETPVVLTAGDPWQAAQAAVADGQPQPWLLNLDDACPPGFDAFERLLEIV 117

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
            +DD    +  R  WR+ + +G+ P 
Sbjct: 118 -SDDPDDKQAARQRWRAYQGAGHTPQ 142


>gi|257487388|ref|ZP_05641429.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330989715|gb|EGH87818.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009016|gb|EGH89072.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 142

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG       +  S  PV+L +   +   +    LV+           + +V  ++  +
Sbjct: 61  LPHG-----NAESDSDAPVVLGLGDDS--GAHEDLLVNLDLSIPAFFKRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|71734138|ref|YP_273423.1| DNA polymerase III subunit chi [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554691|gb|AAZ33902.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330890528|gb|EGH23189.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. mori str.
           301020]
          Length = 142

 Score = 95.2 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     + +  S  PV+L +   +   +    LV+           + +V  ++  +
Sbjct: 61  LPHG-----DAESDSDAPVVLGLGDDS--GAHEDLLVNLDLSIPAFFKRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|254251667|ref|ZP_04944985.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124894276|gb|EAY68156.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 138

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVVA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++LT       +   R L++  +        +E+++ ++  +D   
Sbjct: 59  --CGVDSAHAASTPIVLTADLDK--SPHHRVLLNLGAAVPAQFARFERLLEVV-GNDPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|332184933|ref|ZP_08386682.1| DNA polymerase III chi subunit, HolC family protein [Sphingomonas
           sp. S17]
 gi|332014657|gb|EGI56713.1| DNA polymerase III chi subunit, HolC family protein [Sphingomonas
           sp. S17]
          Length = 146

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 3   TLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY       +  L V+       G R+ +  G    R +L+  LW    D FLPH  
Sbjct: 2   QVDFYHLTMAPLDRLLPVIADRVMAGGGRLLIVSGDADQRAALDRQLWMVPADSFLPHAQ 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                    S QPVL+      AN +    L D   +   D   +++     + D    +
Sbjct: 62  AGEGN---DSAQPVLIAAEVHPANGARHVALADG--LWRDDALTFDRAFHFFDGD---RI 113

Query: 122 EWGRAHWRSLKNS 134
              R+ WR+L + 
Sbjct: 114 AEARSAWRALADR 126


>gi|320322890|gb|EFW78981.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 142

 Score = 94.4 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     + +  S  PV+L +   +   +    LV+           + +V  ++  +
Sbjct: 61  LPHG-----DAESDSDAPVVLGLGDDS--GAHEDLLVNLDLSIPTFFKRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|320329801|gb|EFW85789.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330874248|gb|EGH08397.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 142

 Score = 94.4 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     + +  S  PV+L +   +   +    LV+           + +V  ++  +
Sbjct: 61  LPHG-----DAESDSNAPVVLGLGDDS--GAHEDLLVNLDLSIPTFFKRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|311104768|ref|YP_003977621.1| DNA polymerase III subunit chi [Achromobacter xylosoxidans A8]
 gi|310759457|gb|ADP14906.1| DNA polymerase III, chi subunit [Achromobacter xylosoxidans A8]
          Length = 154

 Score = 94.4 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     D       +++  Y  G+R+ V C       + +  LW +    F+PH 
Sbjct: 1   MTRIDFAFGAPDRLRTACQVVRKRYLAGQRLVVYCRDGSRLAAFDRMLWAFDDTSFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIR--------FLVDEASMHIGDVDYYEKVVFI 112
             V      ++  PV+LT        +           +L++  S      + +E+++ I
Sbjct: 60  --VLANDPLAAETPVVLTAGDPQQAAAAAGQGGQPQPSWLLNLDSDCPPGFEAFERLLEI 117

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPD 139
           + +DD    +  R  WR+   +G+ P 
Sbjct: 118 V-SDDPEDKQAARQRWRTYLTAGHTPQ 143


>gi|103487245|ref|YP_616806.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis
           RB2256]
 gi|98977322|gb|ABF53473.1| DNA polymerase III chi subunit, HolC [Sphingopyxis alaskensis
           RB2256]
          Length = 149

 Score = 94.0 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 1   MRTLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + FYR  ++  E  L  L       G R+ V   +   R  ++  LWT     FLPH
Sbjct: 1   MPRVDFYRLTRDPVERVLPALAARVLGNGDRLLVVAAAAMQRQDIDAALWTANPASFLPH 60

Query: 60  GVDVGDEGDFSSFQPVLL--TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           G     +    + +P+LL  T+ +   N ++   L D       D   +++  F+    D
Sbjct: 61  GHAGTPD---EAIEPILLSGTLDTSPPNGASRLALADG--EWREDALAFDRTFFLF---D 112

Query: 118 QGSLEWGRAHWRSLKNS 134
              ++  RA WR+L   
Sbjct: 113 NSRIDDARATWRALAAR 129


>gi|134093988|ref|YP_001099063.1| putative DNA polymerase III subunit chi [Herminiimonas
           arsenicoxydans]
 gi|133737891|emb|CAL60936.1| putative DNA polymerase III chi subunit, HolC [Herminiimonas
           arsenicoxydans]
          Length = 141

 Score = 94.0 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L +   +   +V +         +L+E LWT+ +  FLPH 
Sbjct: 1   MTRIDFHSNVPDKIAYACRLARKARKADFQVVILARDSAQLAALDEALWTFSEHDFLPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             VG +   ++   +LLT       +   + L++ +         +E++  ++ + D   
Sbjct: 60  --VGMDDPLAAQTAILLTTEQAMK-SPHHQILINLSDTPPEHFARFERMFEVV-SSDDAD 115

Query: 121 LEWGRAHWRSLKNSGYA 137
              GR  +   K  GY 
Sbjct: 116 KSSGRERYAYYKQRGYP 132


>gi|149378266|ref|ZP_01895978.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893]
 gi|149357463|gb|EDM45973.1| DNA polymerase III, chi subunit [Marinobacter algicola DG893]
          Length = 157

 Score = 93.7 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 5   LFYRFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
            F+    +           L+    ++  RV V C + +    L++ LW +  D F+PH 
Sbjct: 17  WFHILAQNTPAARNLHTAKLVDKARQQRDRVGVVCDTMQQAQELDDLLWNFSPDAFIPHS 76

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           + V D     +    +L    +  +  T+  L   ++    D D ++++  + + +D+  
Sbjct: 77  I-VPDSATTCTDPVGILLCQPVAEDWDTVIIL---SATLPADADRFKRLALVAH-NDEAV 131

Query: 121 LEWGRAHWRSLKNSGYAPDV 140
           L   R+H++ L+  G  P V
Sbjct: 132 LGQARSHFKQLRALGIEPRV 151


>gi|114777970|ref|ZP_01452884.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1]
 gi|114551757|gb|EAU54309.1| DNA polymerase III subunit chi [Mariprofundus ferrooxydans PV-1]
          Length = 146

 Score = 93.7 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 32  SVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRF 91
            V C        L+E LWT   + FL H V   D     + QP+LL  S +  N   +  
Sbjct: 36  LVLCPDPGFAAQLDERLWTIHPESFLAHAVAGNDTAQN-ARQPILLATSIIRDNNPAV-- 92

Query: 92  LVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           L++       D+  +  +V  ++  D+G  +  R  +R+    G  P  +
Sbjct: 93  LINGGLEVPPDISGFAHLVDFVDGWDEGLKQAARERFRTYSQMGLDPKYL 142


>gi|297171527|gb|ADI22525.1| DNA polymerase III, chi subunit [uncultured Oceanospirillales
           bacterium HF0500_09M11]
          Length = 145

 Score = 93.7 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 8/141 (5%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  +LFY  +   E         + +  + + +R+ V C  +     ++   W     GF
Sbjct: 1   MTEILFYITEQAGEGVQTALARRIAEKAWRQSRRIYVHCRDDAHARDVDAAFWAQPATGF 60

Query: 57  LPHGVDVGDEGDFSSF-QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           LPH +      D  +   PV++              L++ A         +++V  +I  
Sbjct: 61  LPHDLAGTPVADTPAAGTPVVVGHGDD--PGDHHDVLINLAPEVPDFATRFQRVAEMITG 118

Query: 116 DDQGSLEWGRAHWRSLKNSGY 136
            D    E GRA +R  ++ G+
Sbjct: 119 -DGPLREAGRARFRFYRDRGF 138


>gi|330721310|gb|EGG99393.1| putative ABC transporter2C ATP-binding protein [gamma
           proteobacterium IMCC2047]
          Length = 142

 Score = 93.7 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +         +  L++  Y++  R+ +   SE     L+  LW++K + F
Sbjct: 1   MTRVDFYILADSESQARLQFVCRLVEKAYKQQHRIYIHTDSEATSKELDLLLWSFKVESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +     GD S+  PV +              LV+ ++        +E+   ++   
Sbjct: 61  VPHHLL----GDDSASAPVAIGHGEDC--GDHHDVLVNLSANVPEFFSRFERCAEVVIQQ 114

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D+  L+  R H+   K  GY 
Sbjct: 115 DEI-LQSTRQHFAFYKERGYP 134


>gi|92115037|ref|YP_574965.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens
           DSM 3043]
 gi|91798127|gb|ABE60266.1| DNA polymerase III chi subunit, HolC [Chromohalobacter salexigens
           DSM 3043]
          Length = 150

 Score = 93.3 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  + KG R+ +    E +   L+E LWT+K + +
Sbjct: 1   MTQVDFYILPDTTLDARLAFACRLAETIHRKGYRLHIHTEDETMARELDERLWTFKPESY 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH V   D        PV  T+         +  +++           +E+V  IIN  
Sbjct: 61  LPHAVLGDDVSPEP---PV--TLGWEAPPAPGVEAMLNLHPEIPEWFSRFERVAEIINQH 115

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
            Q  L   RA W++ K  GY 
Sbjct: 116 -QDVLTAKRACWQTYKKRGYP 135


>gi|330962171|gb|EGH62431.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 142

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY                L +  +  G +V + C     R+ L+  LW +K + F
Sbjct: 1   MTQVDFYILPTADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFKGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     + +     PV+L + +     +    LV+           + +V  ++  +
Sbjct: 61  LPHG-----DAESDHDAPVVLGLGAD--PGAHDDLLVNLDLSIPAFFSRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|330873096|gb|EGH07245.1| DNA polymerase III subunit chi [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963187|gb|EGH63447.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 142

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     + +     PV+L +   +   +    LV+           + +V  ++  +
Sbjct: 61  LPHG-----DAESDHDAPVVLGLGDDS--GTHQDLLVNLDLSIPAFFTRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|28868481|ref|NP_791100.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968385|ref|ZP_03396529.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384651|ref|ZP_07233069.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059575|ref|ZP_07251116.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           K40]
 gi|302133009|ref|ZP_07258999.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851719|gb|AAO54795.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213927023|gb|EEB60574.1| DNA polymerase III, chi subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|331015237|gb|EGH95293.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 142

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     + +     PV+L +   +   +    LV+           + +V  ++  +
Sbjct: 61  LPHG-----DAESDHDAPVVLGLGDDS--GTHQDLLVNLDLSIPAFFKRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|297182281|gb|ADI18450.1| DNA polymerase III, chi subunit [uncultured Oceanospirillales
           bacterium HF4000_13G19]
          Length = 145

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 8/141 (5%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  +LFY  +   E         + +  + + +R+ V C  +     ++   W     GF
Sbjct: 1   MTEILFYITEQAGEGVQTALARRIAEKAWRQSRRIYVHCRDDAHARDVDAAFWAQPATGF 60

Query: 57  LPHGVDVGD-EGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           LPH +      G   +  PV++              L++ A         +++V  +I  
Sbjct: 61  LPHDLAGAPVAGTPVAGTPVVVGHGDD--PGDHHDVLINLAPEVPDFATRFQRVAEMITG 118

Query: 116 DDQGSLEWGRAHWRSLKNSGY 136
            D    E GRA +R  ++ G+
Sbjct: 119 -DGPLREAGRARFRFYRDRGF 138


>gi|148358633|ref|YP_001249840.1| DNA polymerase III subunit chi [Legionella pneumophila str. Corby]
 gi|148280406|gb|ABQ54494.1| DNA polymerase III, chi subunit [Legionella pneumophila str. Corby]
          Length = 144

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 4   LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY   +            L++  Y KG  + V C +++  + L+E LWT+K D F+PH
Sbjct: 6   VDFYLLASSLPESRWLVACRLIEKAYSKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +           Q     I            L++ ++        +++V+ ++ ++ + 
Sbjct: 66  NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119

Query: 120 SLEWGRAHWRSLKNSGYA 137
             E  R H++  +N G A
Sbjct: 120 EKEVSRLHYKEYRNKGCA 137


>gi|91782197|ref|YP_557403.1| DNA polymerase III subunit chi [Burkholderia xenovorans LB400]
 gi|296162278|ref|ZP_06845072.1| DNA polymerase III chi subunit HolC [Burkholderia sp. Ch1-1]
 gi|91686151|gb|ABE29351.1| Putative DNA polymerase III chi subunit [Burkholderia xenovorans
           LB400]
 gi|295887432|gb|EFG67256.1| DNA polymerase III chi subunit HolC [Burkholderia sp. Ch1-1]
          Length = 138

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L++  Y+ G+   V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLIRKAYQAGQPTIVLA-EPARLKAFDEQLWTFSPLDFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  P++L  +    +    + L++  +        +E+++ ++  +    
Sbjct: 59  --CMAGTPLAAQTPIVLASTLE--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHEE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LAAGRERYRFYRDRGYA 130


>gi|82914286|ref|XP_728786.1| cytosol aminopeptidase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485310|gb|EAA20351.1| cytosol aminopeptidase [Plasmodium yoelii yoelii]
          Length = 612

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 8/140 (5%)

Query: 1   MRTLLFYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58
           M  + FY              L +  Y +G  V +   ++     L++ LWT+++  F+P
Sbjct: 478 MTRVDFYLLPAGESLLSYACRLTEKAYRQGHTVFLVTDTDDEAAQLDDMLWTFRQGSFVP 537

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           H          ++  P  + +            +++  S        + +V+ ++   D 
Sbjct: 538 H----RAVTGHTAAGPCPVAVGREPPVGFD-DVMINLGSAVPEAFRRFRRVIELV-GPDD 591

Query: 119 GSLEWGRAHWRSLKNSGYAP 138
            +    R H+R  ++ G  P
Sbjct: 592 AARALKREHFRHYRSEGLNP 611


>gi|254514077|ref|ZP_05126138.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3]
 gi|219676320|gb|EED32685.1| DNA polymerase III subunit chi [gamma proteobacterium NOR5-3]
          Length = 142

 Score = 92.1 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY  +N    +     L L +  +++G RV +   +E+    L+E LWT++   F
Sbjct: 1   MTRVGFYIVENTDADSRTRLALRLTEKAHKRGHRVFINSENEQQARQLDELLWTFRPASF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH +      D +S Q + +           +  L++  +     +  +++V  ++N  
Sbjct: 61  LPHAL----CSDNASEQ-ICIGWGQEPQGHDDL--LINLQTRVPQFIGRFQRVAELVN-Q 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           +   LE  R  WR  +  GYA +
Sbjct: 113 EPARLEALRDSWRHYRERGYALE 135


>gi|226943295|ref|YP_002798368.1| DNA polymerase III subunit chi [Azotobacter vinelandii DJ]
 gi|226718222|gb|ACO77393.1| DNA polymerase III chi subunit, HolC [Azotobacter vinelandii DJ]
          Length = 142

 Score = 92.1 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G+R+ + C     R++L+  LW++K + F
Sbjct: 1   MPQVDFYILPSADPAARLDFACKLTEKAWRLGRRIYLHCQDAPQRETLDARLWSFKSEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG+      +  +  P+ L +       S    L++ A         +E++  ++   
Sbjct: 61  LPHGLF-----EEDADAPIALGLGDD--PGSHRDLLINLALSVPSFCARFERIAELVV-S 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  RA +R  +  GYA
Sbjct: 113 EPVIRQATRASYRLYRERGYA 133


>gi|88703590|ref|ZP_01101306.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis
           KT71]
 gi|88702304|gb|EAQ99407.1| DNA polymerase III chi subunit, HolC [Congregibacter litoralis
           KT71]
          Length = 142

 Score = 92.1 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFK----NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY  +    +      L L +  +++G RV +   +E     L+E LWT++   F
Sbjct: 1   MTRVGFYIVENTDTSSRTRLALRLTEKAHKQGHRVFINSENEAQARELDELLWTFRPASF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH +   D  +      + +      A    +  L++        +  +++V  ++N  
Sbjct: 61  LPHALCSDDSSEQ-----ICIGWGQEPAGHDDL--LINLQLSVPDFIGRFQRVAELVN-Q 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           +   LE  R  WR  +  GYA +
Sbjct: 113 EPARLEALRHSWRHYRERGYALE 135


>gi|307611509|emb|CBX01183.1| hypothetical protein LPW_28821 [Legionella pneumophila 130b]
          Length = 144

 Score = 92.1 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 4   LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY   +            L++  Y KG  + V C +++  + L+E LWT+K D F+PH
Sbjct: 6   VDFYLLASSLPESRWLVACRLIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +           Q     I            L++ ++        +++V+ ++ ++ + 
Sbjct: 66  NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119

Query: 120 SLEWGRAHWRSLKNSGYA 137
             E  R H++  +N G A
Sbjct: 120 EKEVSRLHYKEYRNKGCA 137


>gi|312795339|ref|YP_004028261.1| DNA polymerase III, chi subunit [Burkholderia rhizoxinica HKI 454]
 gi|312167114|emb|CBW74117.1| DNA polymerase III, chi subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 138

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 9/138 (6%)

Query: 1   MRTLLFY-RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + F+    +   Y    L +  Y+  + + V  G   V  + +E LWT+    F+PH
Sbjct: 1   MTRVDFHTHVADPLSYA-CRLARKAYQAAQPLVVL-GEPAVLRAFDERLWTFSPLDFIPH 58

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   +   PV+LT     A       L++  S        +E+++ +I  +D+ 
Sbjct: 59  ---CMADSALAGETPVVLTTDLDQA--PHYAILLNLGSAVPPQFARFERLLEVI-GNDEH 112

Query: 120 SLEWGRAHWRSLKNSGYA 137
            L  GR  +R  ++ GY 
Sbjct: 113 GLAAGRERYRFYRDRGYT 130


>gi|121997479|ref|YP_001002266.1| DNA polymerase III chi subunit, HolC [Halorhodospira halophila SL1]
 gi|121588884|gb|ABM61464.1| DNA polymerase III chi subunit, HolC [Halorhodospira halophila SL1]
          Length = 140

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 6   FYRF----KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY      +   E     L +  YE G  V +    +   + L+  LWT+++  F+PH  
Sbjct: 3   FYILDGPGEAPRERFACRLAEKAYENGYGVLLLTEDDEQTERLDALLWTFRQGSFVPHAT 62

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
               +G+     PV +      A+ +    L++            +++  +++   +  L
Sbjct: 63  LAARDGE-----PVAVGGDEHAADDA---VLINLTDRTPATWQARQRIAEVVDQR-EAVL 113

Query: 122 EWGRAHWRSLKNSGYAP 138
              R  +R  K +G  P
Sbjct: 114 RASRQRYRIYKEAGCEP 130


>gi|237653451|ref|YP_002889765.1| DNA polymerase III subunit chi [Thauera sp. MZ1T]
 gi|237624698|gb|ACR01388.1| DNA polymerase III chi subunit HolC [Thauera sp. MZ1T]
          Length = 146

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 4   LLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           + FY    D       L    + +G++V+++C        L++ LWT     F+PH   V
Sbjct: 5   VQFYHNTPDRLALAHELAAGAHARGRKVALRCTDATQLRRLDQALWTAVPLDFVPH---V 61

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
           G     ++  PV+L  +           L + A     + + + ++V  I   D   +  
Sbjct: 62  GVGSALAAETPVVLGAAGEPCPWPHADMLFNLADDVPAEAEGF-RMVVEIVGRDAAEVHA 120

Query: 124 GRAHWRSLKNSGYA 137
            R  W + +  GY 
Sbjct: 121 ARLRWAAYRQRGYE 134


>gi|332524892|ref|ZP_08401079.1| DNA polymerase III, chi subunit [Rubrivivax benzoatilyticus JA2]
 gi|332108188|gb|EGJ09412.1| DNA polymerase III, chi subunit [Rubrivivax benzoatilyticus JA2]
          Length = 144

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  ++F+    +       LL+    +G RV V         +L+  LWT+ +  F+PH 
Sbjct: 1   MAEVVFHTGIAEPLGFACRLLRKACRQGARVVVTAPGP-TLAALDRALWTFDERDFVPHL 59

Query: 61  V--DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
                      ++  P+ L              LV+  +        + +V+ I+  D  
Sbjct: 60  RVSAANAGTAQAARTPIWLVDGE--PPDQAPDILVNLGAEVPASTARFSRVIEIV-GDGP 116

Query: 119 GSLEWGRAHWRSLKNSGYAP 138
                 R  WR+ K  G+AP
Sbjct: 117 DEAGAARERWRTWKAHGWAP 136


>gi|187922986|ref|YP_001894628.1| DNA polymerase III subunit chi [Burkholderia phytofirmans PsJN]
 gi|187714180|gb|ACD15404.1| DNA polymerase III chi subunit HolC [Burkholderia phytofirmans
           PsJN]
          Length = 138

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L++  Y+ G+   V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLIRKAYQAGQPTIVLA-EPARLKAFDEQLWTFAPLDFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  P++L  S    +    + L++  +        +E+++ ++  +    
Sbjct: 59  --CMAGTPLAAQTPIVLASSLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHEE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LAAGRERYRFYRDRGYA 130


>gi|54295471|ref|YP_127886.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens]
 gi|53755303|emb|CAH16797.1| hypothetical protein lpl2557 [Legionella pneumophila str. Lens]
          Length = 144

 Score = 91.7 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 4   LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY   +            L++  Y KG  + V C +++  + L+E LWT+K D F+PH
Sbjct: 6   VDFYLLASSLPESRWLVACRLIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +           Q     I            L++ ++        +++V+ ++ ++ + 
Sbjct: 66  NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119

Query: 120 SLEWGRAHWRSLKNSGYA 137
             E  R H++  +N G A
Sbjct: 120 EKEVSRLHYKKYRNKGCA 137


>gi|254242523|ref|ZP_04935845.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192]
 gi|126195901|gb|EAZ59964.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa 2192]
          Length = 142

 Score = 91.4 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  + +G RV + C  E  R  L+  LW+++ + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMRVYLHCADEAQRRELDGRLWSFRGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +      +  +  PV L +     N      L++      G V  + +V  ++  +
Sbjct: 61  IPHSL-----AEEDAEAPVALGLGETPGN--HRDLLINLTLEAPGFVANFSRVAELVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  R  +R  +  GY 
Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133


>gi|116051860|ref|YP_789297.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313109251|ref|ZP_07795219.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa
           39016]
 gi|115587081|gb|ABJ13096.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881721|gb|EFQ40315.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa
           39016]
          Length = 142

 Score = 91.4 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  + +G RV + C  E  R  L+  LW+++ + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +      +  +  PV L +     N      L++      G V  + +V  ++  +
Sbjct: 61  IPHSL-----AEEDAEAPVALGLGETPGN--HRDLLINLTLEAPGFVANFSRVAELVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  R  +R  +  GY 
Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133


>gi|126667527|ref|ZP_01738497.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17]
 gi|126627953|gb|EAZ98580.1| DNA polymerase III, chi subunit [Marinobacter sp. ELB17]
          Length = 174

 Score = 91.4 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 5   LFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
            F+  + +           L+   +++G RV + C +      L++ LW +  D F+PH 
Sbjct: 36  WFHILRQNTPAARNLHAAKLVNKAWQQGDRVGIVCDTLEHAQELDDLLWNFSPDAFIPH- 94

Query: 61  VDVGDEGDFSSFQPV-LLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             V  E +     PV +L       +  T+  L    +      D ++++  I   +D  
Sbjct: 95  -SVISEANTPCKDPVGILLHPPAAEDWDTVIILC---TELPAHADQFKRLALIAQ-NDPV 149

Query: 120 SLEWGRAHWRSLKNSGYAPDV 140
            L+  R+H++ L+  G    V
Sbjct: 150 VLDQARSHFKQLRALGIEARV 170


>gi|152989277|ref|YP_001346666.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PA7]
 gi|218889884|ref|YP_002438748.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa LESB58]
 gi|150964435|gb|ABR86460.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa PA7]
 gi|218770107|emb|CAW25869.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa LESB58]
          Length = 142

 Score = 91.4 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  + +G RV + C  E  R  L+  LW+++ + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMRVYLHCADEAQRSELDGRLWSFRGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +      +  +  PV L +       +    L++      G V  + +V  ++  +
Sbjct: 61  IPHSL-----AEEDAEAPVALGLGE--PPGNHRDLLINLTLEAPGFVPNFSRVAELVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  R  +R  +  GY 
Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133


>gi|152980235|ref|YP_001352359.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille]
 gi|151280312|gb|ABR88722.1| DNA polymerase III chi subunit [Janthinobacterium sp. Marseille]
          Length = 141

 Score = 91.0 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L +       ++ +          L+E LWT+ +  FLPH 
Sbjct: 1   MTRIDFHSNVPDKISYACRLARKARNANFQIVILAQDRAQLAQLDEKLWTFSEQDFLPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V  +   ++  P+LLT  S    +   + L++ +         +E++  +I+T+D   
Sbjct: 60  --VMLDDALAAQTPILLTADSAME-SPHTQILINLSDTSPTHFARFERMFEVISTEDADK 116

Query: 121 LEWGRAHWRSLKNSGYA 137
              GR  +   K  GY 
Sbjct: 117 -SAGRDRYSFYKQRGYP 132


>gi|296108277|ref|YP_003619978.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650179|gb|ADG26026.1| DNA polymerase III subunit chi [Legionella pneumophila 2300/99
           Alcoy]
          Length = 144

 Score = 91.0 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 4   LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY   +            L++  Y KG  + V C +++  + L+E LWT+K D F+PH
Sbjct: 6   VDFYLLASSLPESRWLVACRLIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +           Q     I            L++ ++        +++V+ ++ ++ + 
Sbjct: 66  NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119

Query: 120 SLEWGRAHWRSLKNSGYA 137
             E  R H++  +N G A
Sbjct: 120 EKEVSRLHYKEYRNKGCA 137


>gi|53803850|ref|YP_114528.1| DNA polymerase III subunit chi [Methylococcus capsulatus str. Bath]
 gi|53757611|gb|AAU91902.1| putative DNA polymerase III, chi subunit [Methylococcus capsulatus
           str. Bath]
          Length = 152

 Score = 90.6 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 1   MRTLLFYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58
           M  + FY              L +  Y +G  V +   ++     L++ LWT+++  F+P
Sbjct: 1   MTRVDFYLLPAGESLLSYACRLTEKAYRQGHTVFLVTDTDDEAAQLDDMLWTFRQGSFVP 60

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           H          ++  P  + +            +++  S        + +V+ ++   D 
Sbjct: 61  H----RAVTGHTAAGPCPVAVGREPPVGFD-DVMINLGSAVPEAFRRFRRVIELV-GPDD 114

Query: 119 GSLEWGRAHWRSLKNSGYAPDVI 141
            +    R H+R  ++ G  P ++
Sbjct: 115 AARALKREHFRHYRSEGLNPAMV 137


>gi|167580139|ref|ZP_02373013.1| DNA polymerase III subunit chi [Burkholderia thailandensis TXDOH]
          Length = 138

 Score = 90.6 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V C       +L+E+LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDEHLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P++LT     A       L++  +        +E+++ ++  +    
Sbjct: 59  --CAVDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|89900901|ref|YP_523372.1| DNA polymerase III subunit chi [Rhodoferax ferrireducens T118]
 gi|89345638|gb|ABD69841.1| DNA polymerase III chi subunit, HolC [Rhodoferax ferrireducens
           T118]
          Length = 144

 Score = 90.6 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+     G ++ V  GS  V   L+  LWT+    F+PH 
Sbjct: 1   MTEVAFHFNAPDRVAYACRLLRKAAASGAKLVV-IGSPDVLQQLDRALWTFSAVDFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             +  E    +  PV+L+ S+       +  L++   +     + +E+V+ ++  +D+  
Sbjct: 59  CFLESESHVVAASPVILSTSTHAVPHQQV--LLNLGQLVPEGFERFERVIEVVGQEDED- 115

Query: 121 LEWGRAHWRSLKNSGY 136
            +  R+ W+S  + GY
Sbjct: 116 RQSARSRWKSYADRGY 131


>gi|294012537|ref|YP_003545997.1| DNA polymerase III chi subunit [Sphingobium japonicum UT26S]
 gi|292675867|dbj|BAI97385.1| DNA polymerase III chi subunit [Sphingobium japonicum UT26S]
          Length = 149

 Score = 90.6 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY+  ++  E  L  +     + G R+ V        + ++  LW    + FL HG 
Sbjct: 2   QVDFYQLSRDPVEQVLPAIAGRVLDMGARLLVVAREPERLERISAGLWAGPPESFLAHGR 61

Query: 62  DVGDEGDFSSFQPVLLT----ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
                 D  S QPVLL      + L AN +    L D   +   +   +E+  +     D
Sbjct: 62  A---GDDAESVQPVLLAQHCPAADLVANGARHVALADG--LWREEALGFERAFYFF---D 113

Query: 118 QGSLEWGRAHWRSL-KNSGYAP 138
             +++  RA WR L K  G  P
Sbjct: 114 AETIDGARASWRELAKREGVIP 135


>gi|163856080|ref|YP_001630378.1| DNA polymerase III, chi subunit [Bordetella petrii DSM 12804]
 gi|163259808|emb|CAP42109.1| DNA polymerase III, chi subunit [Bordetella petrii]
          Length = 147

 Score = 90.6 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     D         +  Y+ G+R+ V C       + +  LW +    F+PH 
Sbjct: 3   MTRIDFAFGAADRLRAACQAARKRYQAGQRLVVYCADGARLAAFDRMLWAFDDVSFVPH- 61

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             V      ++  PV+LT ++     +    +L++         D + +V+ I+ +DD  
Sbjct: 62  --VLATDPLAADTPVILTAAAPQPAAAGDEPWLLNLDDDCPPGYDGFARVLEIV-SDDPA 118

Query: 120 SLEWGRAHWRSLKNSGYAP 138
             +  R  WR  + +G+ P
Sbjct: 119 DRQAARQRWRVYQAAGHTP 137


>gi|313497346|gb|ADR58712.1| HolC [Pseudomonas putida BIRD-1]
          Length = 142

 Score = 90.2 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY    D           L +  +  G RV + C     R  L++ LW +K + F
Sbjct: 1   MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRIELDQRLWRFKGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH     D  +  +   V+L ++           L++  +   G V  +E+V  I+  +
Sbjct: 61  VPH-----DLAEVHADADVVLGLTDNA--GEHHGLLINLGASVPGFVGQFERVAEIVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  R  +R  +  GYA
Sbjct: 113 EPAIRQSARERFRFYREQGYA 133


>gi|26987715|ref|NP_743140.1| DNA polymerase III subunit chi [Pseudomonas putida KT2440]
 gi|148546260|ref|YP_001266362.1| DNA polymerase III subunit chi [Pseudomonas putida F1]
 gi|24982403|gb|AAN66604.1|AE016288_3 DNA polymerase III, chi subunit [Pseudomonas putida KT2440]
 gi|148510318|gb|ABQ77178.1| DNA polymerase III, chi subunit [Pseudomonas putida F1]
          Length = 142

 Score = 90.2 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY    D           L +  +  G RV + C     R  L++ LW +K + F
Sbjct: 1   MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH     D  +  +   V+L ++           L++  +   G V  +E+V  I+  +
Sbjct: 61  VPH-----DLAEVHADADVVLGLADNA--GEHHGLLINLGASVPGFVGQFERVAEIVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  R  +R  +  GYA
Sbjct: 113 EPAIRQSARERFRFYREQGYA 133


>gi|295675787|ref|YP_003604311.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1002]
 gi|295435630|gb|ADG14800.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1002]
          Length = 138

 Score = 90.2 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L +  Y  G+ + V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLARKAYLAGQPLVVLA-EPARLRAFDEMLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  PV+L  +    +    + L++  +        +E+++ ++  +    
Sbjct: 59  --CMAGTPLAADTPVVLATNLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHEE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LAAGRERYRFYRDRGYA 130


>gi|52842838|ref|YP_096637.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629949|gb|AAU28690.1| DNA polymerase III, chi subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 144

 Score = 90.2 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 4   LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY   +            L++  Y KG  + V C +++  + L+E LWT+K D F+PH
Sbjct: 6   VDFYLLASSLPESRWLVACRLIEKAYTKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +           Q     I            L++ ++        +++V+ ++ ++ + 
Sbjct: 66  NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119

Query: 120 SLEWGRAHWRSLKNSGYA 137
             E  R H++  ++ G  
Sbjct: 120 EKEVSRLHYKEYRHKGCE 137


>gi|209519260|ref|ZP_03268062.1| DNA polymerase III chi subunit HolC [Burkholderia sp. H160]
 gi|209500340|gb|EEA00394.1| DNA polymerase III chi subunit HolC [Burkholderia sp. H160]
          Length = 138

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L +  Y  G+ + V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLARKAYLAGQPLVVLA-EPARLRAFDEMLWTFAPLEFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    +S  PV+L  +    +    + L++  +        +E+++ ++  + Q  
Sbjct: 59  --CMAGTPLASDTPVVLATNLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAQEE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LAAGRERYRFYRDRGYA 130


>gi|291614867|ref|YP_003525024.1| DNA polymerase III chi subunit HolC [Sideroxydans lithotrophicus
           ES-1]
 gi|291584979|gb|ADE12637.1| DNA polymerase III chi subunit HolC [Sideroxydans lithotrophicus
           ES-1]
          Length = 139

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    D       L     + G RV +    E   D L++ LW +    F+PH 
Sbjct: 1   MTKVDFYTGSEDKLRTACQLSHKAMQNGLRVLLHAPDEATADKLDQLLWHYPPTAFMPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  PV++       ++     L+   +  +     +E+V+ I++ DD  +
Sbjct: 60  --CHSHEADAATLPVVIGRDEAFPHS---ELLISLHNACLPFFSRFERVIEIVSQDDADA 114

Query: 121 LEWGRAHWRSLKNSGYA 137
            + GR  +   K+ GY 
Sbjct: 115 -KLGRERYVFYKDRGYE 130


>gi|134296644|ref|YP_001120379.1| DNA polymerase III subunit chi [Burkholderia vietnamiensis G4]
 gi|134139801|gb|ABO55544.1| DNA polymerase III chi subunit, HolC [Burkholderia vietnamiensis
           G4]
          Length = 138

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EAARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P+LLT     A     + L++  +        +E+++ ++  +    
Sbjct: 59  --CSVDSPHAAATPILLTADLDQA--PHHQVLLNLGATVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|300310781|ref|YP_003774873.1| DNA polymerase III subunit chi [Herbaspirillum seropedicae SmR1]
 gi|300073566|gb|ADJ62965.1| DNA polymerase III (chi subunit) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 139

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+         +  L++     G  + V+         L++ LW++ +  FLPH 
Sbjct: 1   MTRIDFHSNVPQKITYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V  +   ++   ++LT S   A     + L++  +        +E+++ II+ DD   
Sbjct: 60  --VMAKDPLAAQTAIILT-SDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADK 116

Query: 121 LEWGRAHWRSLKNSGYA 137
              GR  +R  K  GY 
Sbjct: 117 -AAGRDRYRFYKERGYP 132


>gi|114319718|ref|YP_741401.1| DNA polymerase III chi subunit, HolC [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226112|gb|ABI55911.1| DNA polymerase III chi subunit, HolC [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 146

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 4   LLFYRFKNDW-----EYNLLVLLQDEYEKGKR-VSVQCGSERVRDSLNEYLWTWKKDGFL 57
           + FY           E     L+    E G R + +Q    +    L+  LWT++K+ F+
Sbjct: 9   VRFYVLNRATDPVQRERFACELVAKGLEHGVRHIHIQVHDPQQARRLDTLLWTFRKESFI 68

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PH V    E +     PV++         +    L++ A+    +   + +V  ++   D
Sbjct: 69  PHAVQAEAEDE-----PVVIGDRPEPRPDA---LLINLAADIPPEWTAFGRVFEVVV-QD 119

Query: 118 QGSLEWGRAHWRSLKNSGYAPD 139
              L   R+H+R+ + +G  P+
Sbjct: 120 PEILHTTRSHFRTYQQAGVTPE 141


>gi|170692020|ref|ZP_02883184.1| DNA polymerase III chi subunit HolC [Burkholderia graminis C4D1M]
 gi|170143304|gb|EDT11468.1| DNA polymerase III chi subunit HolC [Burkholderia graminis C4D1M]
          Length = 138

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L++  Y+ G+   V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLVRKAYQAGQPTIVVA-EPERLRAFDEQLWTFSALDFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  P++L  +    +    + L++  +        +E+++ ++  +    
Sbjct: 59  --CMAGTPLAAQTPIVLAANLD--DVPHHQVLLNLGATVPAQFARFERLLEVV-GNAHDE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LIAGRERYRFYRDRGYA 130


>gi|66044341|ref|YP_234182.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. syringae
           B728a]
 gi|289623817|ref|ZP_06456771.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649168|ref|ZP_06480511.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|289678197|ref|ZP_06499087.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. syringae
           FF5]
 gi|298485817|ref|ZP_07003895.1| DNA polymerase III chi subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302188388|ref|ZP_07265061.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. syringae
           642]
 gi|63255048|gb|AAY36144.1| DNA polymerase III chi subunit, HolC [Pseudomonas syringae pv.
           syringae B728a]
 gi|298159641|gb|EFI00684.1| DNA polymerase III chi subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867844|gb|EGH02553.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330899519|gb|EGH30938.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330950948|gb|EGH51208.1| DNA polymerase III subunit chi [Pseudomonas syringae Cit 7]
 gi|330969236|gb|EGH69302.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330975726|gb|EGH75792.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 142

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     + +      V+L +   +   S +   +D +         + +V  ++  +
Sbjct: 61  LPHG-----DAESDHDAAVVLGLGDDSGEHSDLLVNLDLS--IPAFFKRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYREQGYPPQ 135


>gi|54298621|ref|YP_124990.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris]
 gi|53752406|emb|CAH13838.1| hypothetical protein lpp2685 [Legionella pneumophila str. Paris]
          Length = 144

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 4   LLFYRFKNDWEY----NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY   +            L++  Y KG  + V C +++  + L+E LWT+K D F+PH
Sbjct: 6   VDFYLLASSLPESRWLVACRLIEKAYIKGHTIFVFCDNQQQAEYLDELLWTFKDDSFIPH 65

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +           Q     I            L++ ++        +++V+ ++ ++ + 
Sbjct: 66  NLQGEGPEPPPPVQ-----IGYQKEPRGFTDILLNLSTNIPIFYTRFKRVIELV-SNVEH 119

Query: 120 SLEWGRAHWRSLKNSGYA 137
             E  R H++  +  G A
Sbjct: 120 EKEVSRLHYKEYRYKGCA 137


>gi|33593407|ref|NP_881051.1| hypothetical protein BP2422 [Bordetella pertussis Tohama I]
 gi|33597810|ref|NP_885453.1| hypothetical protein BPP3286 [Bordetella parapertussis 12822]
 gi|33602712|ref|NP_890272.1| hypothetical protein BB3737 [Bordetella bronchiseptica RB50]
 gi|33572763|emb|CAE42693.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|33574239|emb|CAE38571.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33577154|emb|CAE35711.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
 gi|332382816|gb|AEE67663.1| hypothetical protein BPTD_2379 [Bordetella pertussis CS]
          Length = 151

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 10/143 (6%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     D         +  ++ G+R+ V C       + +  LW  +   F+PH 
Sbjct: 1   MTRIDFAFGAPDRLRAACRTARKRFQAGQRLVVYCADGGRLAAFDRMLWALEDVSFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISS------LNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
             V      ++  PVLLT         L     +  +L++       + D YE+++ I+ 
Sbjct: 60  --VLANDALAADTPVLLTAGDPAAALALATTGDSRPWLLNLDDGCPPNFDGYERLLEIV- 116

Query: 115 TDDQGSLEWGRAHWRSLKNSGYA 137
           +DD    +  R  WR  +N+G+A
Sbjct: 117 SDDPADRQAARQRWRDYQNAGHA 139


>gi|187477635|ref|YP_785659.1| DNA polymerase III subunit chi [Bordetella avium 197N]
 gi|115422221|emb|CAJ48745.1| DNA polymerase III, chi subunit [Bordetella avium 197N]
          Length = 145

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     D         +  Y  G+R+ V C       + +  LW +    F+PH 
Sbjct: 1   MTRIDFAFGAADRLRAACQTARKRYLAGQRLIVYCSDANRLSAFDRLLWAFDDISFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRF----LVDEASMHIGDVDYYEKVVFIINTD 116
             V      ++  P++LT +  N   +        L++         D + +V+ I++ +
Sbjct: 60  --VLARDALAAHTPIVLTAT--NPQQAAALAPDAWLLNLDDACPPHYDDFPRVLEIVSGN 115

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           D       R  WR    +G+ P
Sbjct: 116 DTD-RAAARVRWRDYVAAGHTP 136


>gi|153877788|ref|ZP_02004368.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS]
 gi|152065748|gb|EDN65632.1| DNA polymerase III chi subunit, HolC [Beggiatoa sp. PS]
          Length = 143

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 1   MRTLLFY--RFKNDWEYNL--LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY    +N +  +     L    + +G R+ +Q  S      L+ +LW +K++ F
Sbjct: 1   MPQIDFYILHTQNRYAKDRFTCQLTDKAWHQGYRIYIQTTSLAQAQQLDNFLWVFKEESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH +         S  P+ +  S+       +  L++         + ++++  I+N D
Sbjct: 61  LPHDIYPEMS---ESLAPIRIGYSAQVCEGMDV--LINLTETVPPFFESFQRIAEIVN-D 114

Query: 117 DQGSLEWGRAHWRSLKNSGY 136
              + + GR  +R  ++  Y
Sbjct: 115 TPYAKQAGRTRYRFYRDKAY 134


>gi|308050964|ref|YP_003914530.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
 gi|307633154|gb|ADN77456.1| DNA-directed DNA polymerase [Ferrimonas balearica DSM 9799]
          Length = 153

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY                         Y KG+RV V C S+   ++L+E LW ++
Sbjct: 1   MANATFYLLPGGSDSARVTRPADIACQAAARAYRKGQRVFVHCASQADAEALDEQLWQFE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR-FLVDEASMHIGDVDYYEKVVF 111
            D F+PH +        +   PV +  +  NA     R  L++ A         +  ++ 
Sbjct: 61  PDSFIPHNLVGEGPQGGA---PVEIGWAMPNAALPVNRALLINLAPEVPKFAVQFAHIID 117

Query: 112 IINTDDQGSLEWGRAHWRSLKNSG 135
            +   D+ +    R  +   +  G
Sbjct: 118 FVPA-DEQAKAQARKRFAHYRQLG 140


>gi|77919148|ref|YP_356963.1| DNA polymerase III subunit chi [Pelobacter carbinolicus DSM 2380]
 gi|77545231|gb|ABA88793.1| DNA polymerase III, chi subunit [Pelobacter carbinolicus DSM 2380]
          Length = 138

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 1   MRTLLFYRFKNDWEY-NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + F + K   +  +L  L +  + +G+RV V    +    +L+ ++WTWKK  F+PH
Sbjct: 1   MTRVEFVKIKRPEKAKHLCELAEHFFTQGQRVLVMVCDDNQGVTLDRFMWTWKKGAFIPH 60

Query: 60  GVDVGDEGDFSS-FQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
              V D G      +PV++ +   N N + +  +       +  +  ++ V+      + 
Sbjct: 61  ---VYDNGAVDCLDEPVIIEVEERNPNNAGVLIM--GKPCSLDFIRQFDLVIDFAELYEP 115

Query: 119 GSLEWGRAHWRSLKNSGYA 137
                 R  +   + +G+ 
Sbjct: 116 QLKVAARKRYAHFRETGFE 134


>gi|330504707|ref|YP_004381576.1| DNA polymerase III subunit chi [Pseudomonas mendocina NK-01]
 gi|328918993|gb|AEB59824.1| DNA polymerase III, chi subunit [Pseudomonas mendocina NK-01]
          Length = 139

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   ++           L    +  G  V V+   E     LNE LWT+K + F
Sbjct: 1   MPRIEFYVLSSNDAIGRLRAACQLALKAWSAGLPVFVRGSDEAQCAELNELLWTFKAERF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH     D    +   PV+L I    A ++    L++  S     V+ + +++ I+N  
Sbjct: 61  VPH-----DLHQDAPLSPVVLGIDE--APSADQGVLINLGSSLSPHVERFSRIIEIVN-Q 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPDVI 141
               L   R ++R+ +  GY P  +
Sbjct: 113 QPELLSACRENFRTYRQRGYDPQRV 137


>gi|323525106|ref|YP_004227259.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1001]
 gi|323382108|gb|ADX54199.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1001]
          Length = 138

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L +  Y+ G+   V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLARKAYQAGQPTIVVA-EPERLQAFDEQLWTFSALDFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  P++L  +    +    + L++  +        +E+++ ++  +    
Sbjct: 59  --CMAGTPLAAHTPIVLAANLD--DVPHHQVLLNLGASVPAQFARFERLLEVV-GNAHDE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LIAGRERYRFYRDRGYA 130


>gi|49076858|gb|AAT49608.1| PA3832 [synthetic construct]
          Length = 143

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  + +G +V + C  E  R  L+  LW+++ + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +      +  +  PV L +       +    L++      G V  + +V  ++  +
Sbjct: 61  IPHSL-----AEEDAEAPVALGLGE--PPGNHRDLLINLTLEAPGFVPNFSRVAELVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  R  +R  +  GY 
Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133


>gi|83721052|ref|YP_441380.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264]
 gi|167618245|ref|ZP_02386876.1| DNA polymerase III subunit chi [Burkholderia thailandensis Bt4]
 gi|257139947|ref|ZP_05588209.1| DNA polymerase III subunit chi [Burkholderia thailandensis E264]
 gi|83654877|gb|ABC38940.1| DNA polymerase III, chi subunit, putative [Burkholderia
           thailandensis E264]
          Length = 138

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P++LT     A       L++  +        +E+++ ++  +    
Sbjct: 59  --CAVDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|71908696|ref|YP_286283.1| DNA polymerase III chi subunit, HolC [Dechloromonas aromatica RCB]
 gi|71848317|gb|AAZ47813.1| DNA polymerase III chi subunit, HolC [Dechloromonas aromatica RCB]
          Length = 140

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +D       LL   Y K K + V      V   ++  LWT     F+PH 
Sbjct: 1   MTEVFFYHGASDKIAAACALLSGAYAKKKPMLVYTLEPEVASGIDRMLWTNAALSFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P+L+  +             + +         +  ++ ++   D+  
Sbjct: 60  --CRADSPLAAETPILIADTLETIPQDERLM--NLSQEIPPGFSRFHSLIEVV-GQDESD 114

Query: 121 LEWGRAHWRSLKNSGYA 137
               R   +  K+ GY 
Sbjct: 115 RLAARDRVKFYKDRGYE 131


>gi|53725609|ref|YP_102448.1| DNA polymerase III subunit chi [Burkholderia mallei ATCC 23344]
 gi|67640817|ref|ZP_00439611.1| DNA polymerase III, chi subunit [Burkholderia mallei GB8 horse 4]
 gi|121599148|ref|YP_993647.1| DNA polymerase III subunit chi [Burkholderia mallei SAVP1]
 gi|124386421|ref|YP_001028892.1| DNA polymerase III subunit chi [Burkholderia mallei NCTC 10229]
 gi|126450095|ref|YP_001081196.1| DNA polymerase III subunit chi [Burkholderia mallei NCTC 10247]
 gi|167003641|ref|ZP_02269427.1| DNA polymerase III, chi subunit [Burkholderia mallei PRL-20]
 gi|254178378|ref|ZP_04885033.1| DNA polymerase III, chi subunit [Burkholderia mallei ATCC 10399]
 gi|254199350|ref|ZP_04905716.1| DNA polymerase III, chi subunit [Burkholderia mallei FMH]
 gi|254205666|ref|ZP_04912018.1| DNA polymerase III, chi subunit [Burkholderia mallei JHU]
 gi|254357824|ref|ZP_04974097.1| DNA polymerase III, chi subunit [Burkholderia mallei 2002721280]
 gi|52429032|gb|AAU49625.1| DNA polymerase III, chi subunit, putative [Burkholderia mallei ATCC
           23344]
 gi|121227958|gb|ABM50476.1| putative DNA polymerase III, chi subunit [Burkholderia mallei
           SAVP1]
 gi|124294441|gb|ABN03710.1| putative DNA polymerase III, chi subunit [Burkholderia mallei NCTC
           10229]
 gi|126242965|gb|ABO06058.1| DNA polymerase III, chi subunit [Burkholderia mallei NCTC 10247]
 gi|147748946|gb|EDK56020.1| DNA polymerase III, chi subunit [Burkholderia mallei FMH]
 gi|147753109|gb|EDK60174.1| DNA polymerase III, chi subunit [Burkholderia mallei JHU]
 gi|148026951|gb|EDK84972.1| DNA polymerase III, chi subunit [Burkholderia mallei 2002721280]
 gi|160699417|gb|EDP89387.1| DNA polymerase III, chi subunit [Burkholderia mallei ATCC 10399]
 gi|238521612|gb|EEP85062.1| DNA polymerase III, chi subunit [Burkholderia mallei GB8 horse 4]
 gi|243060867|gb|EES43053.1| DNA polymerase III, chi subunit [Burkholderia mallei PRL-20]
          Length = 138

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P++LT     A       L++  +        +E+++ ++  +    
Sbjct: 59  --CAIDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNPPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|15599027|ref|NP_252521.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAO1]
 gi|107103352|ref|ZP_01367270.1| hypothetical protein PaerPA_01004421 [Pseudomonas aeruginosa PACS2]
 gi|254236736|ref|ZP_04930059.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719]
 gi|296387651|ref|ZP_06877126.1| DNA polymerase III subunit chi [Pseudomonas aeruginosa PAb1]
 gi|12230135|sp|O68823|HOLC_PSEAE RecName: Full=DNA polymerase III subunit chi
 gi|9950007|gb|AAG07219.1|AE004800_8 DNA polymerase III, chi subunit [Pseudomonas aeruginosa PAO1]
 gi|2984772|gb|AAD04822.1| DNA polymerase holoenzyme chi subunit [Pseudomonas aeruginosa]
 gi|126168667|gb|EAZ54178.1| DNA polymerase III, chi subunit [Pseudomonas aeruginosa C3719]
          Length = 142

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  + +G +V + C  E  R  L+  LW+++ + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +      +  +  PV L +       +    L++      G V  + +V  ++  +
Sbjct: 61  IPHSL-----AEEDAEAPVALGLGE--PPGNHRDLLINLTLEAPGFVPNFSRVAELVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +    +  R  +R  +  GY 
Sbjct: 113 EPAIRQAARDKFRFYREQGYP 133


>gi|53718608|ref|YP_107594.1| DNA polymerase III subunit chi [Burkholderia pseudomallei K96243]
 gi|76810735|ref|YP_332588.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1710b]
 gi|126440549|ref|YP_001058066.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 668]
 gi|126454054|ref|YP_001065303.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 1106a]
 gi|134281095|ref|ZP_01767804.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305]
 gi|167718525|ref|ZP_02401761.1| DNA polymerase III subunit chi [Burkholderia pseudomallei DM98]
 gi|167737557|ref|ZP_02410331.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 14]
 gi|167814691|ref|ZP_02446371.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 91]
 gi|167823145|ref|ZP_02454616.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 9]
 gi|167844709|ref|ZP_02470217.1| DNA polymerase III subunit chi [Burkholderia pseudomallei B7210]
 gi|167893244|ref|ZP_02480646.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 7894]
 gi|167901701|ref|ZP_02488906.1| DNA polymerase III subunit chi [Burkholderia pseudomallei NCTC
           13177]
 gi|167909940|ref|ZP_02497031.1| DNA polymerase III subunit chi [Burkholderia pseudomallei 112]
 gi|167917977|ref|ZP_02505068.1| DNA polymerase III subunit chi [Burkholderia pseudomallei BCC215]
 gi|217419436|ref|ZP_03450942.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576]
 gi|226194392|ref|ZP_03789990.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811283|ref|YP_002895734.1| DNA polymerase III subunit chi [Burkholderia pseudomallei MSHR346]
 gi|242315240|ref|ZP_04814256.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b]
 gi|254181438|ref|ZP_04888035.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655]
 gi|254190837|ref|ZP_04897344.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196190|ref|ZP_04902614.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13]
 gi|254261707|ref|ZP_04952761.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a]
 gi|52209022|emb|CAH34962.1| putative DNA polymerase III chi subunit [Burkholderia pseudomallei
           K96243]
 gi|76580188|gb|ABA49663.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710b]
 gi|126220042|gb|ABN83548.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 668]
 gi|126227696|gb|ABN91236.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106a]
 gi|134247401|gb|EBA47486.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 305]
 gi|157938512|gb|EDO94182.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169652933|gb|EDS85626.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei S13]
 gi|184211976|gb|EDU09019.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1655]
 gi|217396740|gb|EEC36756.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 576]
 gi|225933477|gb|EEH29466.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237504050|gb|ACQ96368.1| DNA polymerase III subunit chi [Burkholderia pseudomallei MSHR346]
 gi|242138479|gb|EES24881.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1106b]
 gi|254220396|gb|EET09780.1| DNA polymerase III, chi subunit [Burkholderia pseudomallei 1710a]
          Length = 138

 Score = 88.7 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P++LT     A       L++  +        +E+++ ++  +    
Sbjct: 59  --CAIDNAHAASTPIVLTADLERA--PHHGILLNLGAQVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|254786692|ref|YP_003074121.1| DNA polymerase III subunit chi [Teredinibacter turnerae T7901]
 gi|237684898|gb|ACR12162.1| DNA polymerase III subunit chi [Teredinibacter turnerae T7901]
          Length = 140

 Score = 88.7 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFK----NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY       +D       L +    +G +V +          L+E LW ++ + F
Sbjct: 1   MTRVTFYVLAQGAVSDRHQFACRLTEKAVNQGSKVMIATNDASETKVLDELLWQFRAESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH              PVLL+    +        L++      G    + ++V I+   
Sbjct: 61  VPHHTYGDTLES-----PVLLSHDGDDI--QQHDLLINLRRNIPGAFSRFARLVEIV-IQ 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D    +  R H+   K  GY  +
Sbjct: 113 DPADKQLSRKHFTYFKERGYEIE 135


>gi|88810476|ref|ZP_01125733.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231]
 gi|88792106|gb|EAR23216.1| DNA polymerase III subunit chi [Nitrococcus mobilis Nb-231]
          Length = 144

 Score = 88.7 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 4   LLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + FY                L +  Y +G RV +  G + +  +L+  LWT++   F+PH
Sbjct: 7   IDFYVLTTVAAAARELFCCRLTEKAYRQGYRVFILTGDKALTQALDLQLWTFRAGSFVPH 66

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 + +     PV+L           +  L++ A+          ++  I+ T    
Sbjct: 67  ATLGQADDE-----PVVLG---EQPPRLAVDLLINLAAHCPNHWQRLSRIAEIV-TQQPE 117

Query: 120 SLEWGRAHWRSLKNSGYAP 138
           SLE  R  +R  +N G  P
Sbjct: 118 SLELARERFRCYRNDGAQP 136


>gi|254428118|ref|ZP_05041825.1| DNA polymerase III, chi subunit superfamily [Alcanivorax sp. DG881]
 gi|196194287|gb|EDX89246.1| DNA polymerase III, chi subunit superfamily [Alcanivorax sp. DG881]
          Length = 139

 Score = 88.7 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 1   MRTLLFY---RFKNDWEYNLL-VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +  +     L   +     ++G++V V C +E     ++   W     GF
Sbjct: 1   MTEVTFYLSSKVGDGVRQALAWRIADKALKQGRQVYVHCQNEAHARQVDAQFWQSPATGF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPH +    +       PVLL              L++           +++V  +I+  
Sbjct: 61  LPHALGGEGQA------PVLLGFGDD--PGHHHDVLINLTDQVPDFSSRFQRVAEMISGA 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D    + GR  +R  ++ G+ 
Sbjct: 113 D-TERQQGRERFRFYRDRGFP 132


>gi|167835787|ref|ZP_02462670.1| DNA polymerase III subunit chi [Burkholderia thailandensis MSMB43]
          Length = 138

 Score = 88.7 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G R  V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAG-RPVVVCAEPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P++LT     A       L++  +        +E+++ ++  +    
Sbjct: 59  --CAVDNAHAAGTPIVLTADLDRA--PHHGILLNLGAQVPAQFARFERLLEVV-GNTPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|70728447|ref|YP_258196.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf-5]
 gi|68342746|gb|AAY90352.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens Pf-5]
          Length = 142

 Score = 88.7 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L    +  G R+ + C     RD L+  LW +K + F
Sbjct: 1   MTKVDFYILPSADPAARLDFACKLTDKAWRMGHRIYLHCSDAEQRDELDARLWRFKGETF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PHG    +         ++L +            LV+           + ++  ++  +
Sbjct: 61  VPHGPAESEPEGL-----IVLGLGQD--PGPHNDLLVNLDLKVPAFAPRFARIAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D    +  R  +R  +  GY 
Sbjct: 113 DPAIRQAARESFRFYREQGYP 133


>gi|146283388|ref|YP_001173541.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501]
 gi|145571593|gb|ABP80699.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri A1501]
 gi|327481781|gb|AEA85091.1| DNA polymerase III, chi subunit [Pseudomonas stutzeri DSM 4166]
          Length = 139

 Score = 88.7 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 1   MRTLLFYRF--KNDW--EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY     N          L    ++ G +V V+C  E     L+E LW+++ + F
Sbjct: 1   MTRIEFYVLPDDNPLGRLRAACQLAAKGWQHGLQVFVRCSDEDQSTRLDELLWSFRAERF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH     ++       PV++ +         +  L++ A      +D + +V+ I+N  
Sbjct: 61  IPH-----EQYAEEVQAPVVIGLEQEPPTAQGL--LINLAPTLSAHIDRFSRVIEIVN-Q 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPDVI 141
           +   L   R ++R  +  GY P  +
Sbjct: 113 EPQLLTACRENFRLYRRQGYDPQRV 137


>gi|167032000|ref|YP_001667231.1| DNA polymerase III subunit chi [Pseudomonas putida GB-1]
 gi|166858488|gb|ABY96895.1| DNA-directed DNA polymerase [Pseudomonas putida GB-1]
          Length = 142

 Score = 88.7 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY    D           L +  +  G RV + C     R  L++ LW +K + F
Sbjct: 1   MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDTEQRSELDQRLWRFKGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH     D  +  +   V L ++           L++  +   G V  +E+V  I+  +
Sbjct: 61  VPH-----DLAEVHADADVALGLADNA--GEHRDLLINLGASVPGFVGQFERVAEIVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           + G  +  R  +R  +  GYA
Sbjct: 113 EPGIRQSARERFRFYREQGYA 133


>gi|330811516|ref|YP_004355978.1| DNA polymerase III, chi subunit [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379624|gb|AEA70974.1| Putative DNA polymerase III, chi subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 142

 Score = 88.3 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L++  +  G R+ + C     R+ L+  LW +K + F
Sbjct: 1   MTKVDFYILPSADPSARLDFACKLVEKAWRMGHRIYLHCSDAAQREDLDARLWAFKGESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PHG    +         ++L +            LV+           + +V  ++  +
Sbjct: 61  VPHGPAESEPEGL-----IVLGLGDDC--GQHQDLLVNLDLKVPAFAQRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D    +  R  +R  +  GY 
Sbjct: 113 DPAIRQAARESFRFYREQGYP 133


>gi|104783413|ref|YP_609911.1| DNA polymerase III subunit chi [Pseudomonas entomophila L48]
 gi|95112400|emb|CAK17127.1| DNA polymerase III, chi subunit [Pseudomonas entomophila L48]
          Length = 142

 Score = 88.3 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY    D           L +  +  G RV + C  E  R  L+E LW +K + F
Sbjct: 1   MSQVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDEAQRLDLDERLWRFKGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH      +        V L + +          L++      G V  +E+V  I+  +
Sbjct: 61  IPHNHAETHQDAS-----VALGLGNDA--GEHRDLLINLGGDVPGFVGQFERVAEIVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +       R  +R  +  GYA
Sbjct: 113 EPTIRLAARERFRFYREQGYA 133


>gi|149186117|ref|ZP_01864431.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21]
 gi|148830148|gb|EDL48585.1| DNA polymerase III chi subunit [Erythrobacter sp. SD-21]
          Length = 146

 Score = 88.3 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 4   LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY+  N   +  +  L +   + G+R+ V    ER+R+ +++ LW      FL +G  
Sbjct: 3   VDFYQLSNDPVDVTVAKLARKVLQAGERLVVVAADERLREHISKTLWEQGGGSFLANG-- 60

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
              +G  ++ QP+L+  +    N + +  L D       D   +++ + +    D  + E
Sbjct: 61  -PADGPHAARQPILIAETCAAPNEARMAILADG--QWREDASGFDRTMLLF---DAEATE 114

Query: 123 WGRAHWRSLKNS 134
             R  WR L   
Sbjct: 115 AARGLWRELAAR 126


>gi|307728898|ref|YP_003906122.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1003]
 gi|307583433|gb|ADN56831.1| DNA polymerase III chi subunit HolC [Burkholderia sp. CCGE1003]
          Length = 138

 Score = 88.3 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L +  Y+ G+   V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLARKAYQAGQPTIVVA-EPERLRAFDEQLWTFSALDFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  P++L  +         + L++  +        +E+++ ++  +    
Sbjct: 59  --CMAGTPLAAQTPIVLATNLDEV--PHHQVLLNLGASVPAQFARFERLLEVV-GNAHDE 113

Query: 121 LEWGRAHWRSLKNSGYA 137
           L  GR  +R  ++ GYA
Sbjct: 114 LIAGRERYRFYRDRGYA 130


>gi|229588595|ref|YP_002870714.1| DNA polymerase III subunit chi [Pseudomonas fluorescens SBW25]
 gi|229360461|emb|CAY47318.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens
           SBW25]
          Length = 142

 Score = 87.9 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G R+ + C     RD L+  LW +K + F
Sbjct: 1   MTQVDFYILPSADPLARLDFACKLTEKAWRMGHRIYLHCSDAAQRDELDARLWRFKGESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PHG    +         V+L +            LV+           + +V  ++  +
Sbjct: 61  VPHGPAESEPEGL-----VVLGLGDSC--GDHHDLLVNLDLKVPPFAKAFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D    +  R  +R  +  GY 
Sbjct: 113 DPAIRQAARESFRFYREQGYP 133


>gi|293604025|ref|ZP_06686438.1| DNA-directed DNA polymerase III chi subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292817629|gb|EFF76697.1| DNA-directed DNA polymerase III chi subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 156

 Score = 87.9 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 14/149 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     D       +++  +  G+R+ V C       + +  LW +    F+PH 
Sbjct: 1   MTRIDFAFGAPDRLRTACQVVRKRFLAGQRLVVYCKDGSRLAAFDRMLWAFDDTAFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLT----------ISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110
             V      +   PV+LT                  +   +L++  +      + +E+++
Sbjct: 60  --VLANDPLAPETPVVLTAGDPQQAAQAAQPDAGPDAPPLWLLNLDNDCPPGFETFERLL 117

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSGYAPD 139
            I+ +DD    +  R  WR   N+G+ P 
Sbjct: 118 EIV-SDDPDDKQAARQRWRVYLNAGHTPQ 145


>gi|114562095|ref|YP_749608.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina
           NCIMB 400]
 gi|114333388|gb|ABI70770.1| DNA polymerase III chi subunit, HolC [Shewanella frigidimarina
           NCIMB 400]
          Length = 149

 Score = 87.5 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 1   MRTLLFY-----RFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51
           M   LFY       +      L      L + +Y + K V + C  ++   +++E LW +
Sbjct: 1   MTQALFYLMPDNHNQMSALDALYLAACRLAEQQYRQQKTVYIHCKDKQQAYAIDELLWQF 60

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
           + + F+PH +    EG  +   PV +   +L  N S  + L++ A            ++ 
Sbjct: 61  EPNAFVPHNLKG--EGPVTGA-PVEIGFDTLGPNKSR-QVLINLADQMPSFAVNLPHIID 116

Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAP 138
               +D       R  +R  +N G  P
Sbjct: 117 -FVANDDELKRIARNRYRQYQNVGITP 142


>gi|192361958|ref|YP_001981936.1| DNA polymerase III subunit chi [Cellvibrio japonicus Ueda107]
 gi|190688123|gb|ACE85801.1| DNA polymerase III, chi subunit [Cellvibrio japonicus Ueda107]
          Length = 139

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY                L++     G  + V   +       +E LWT+K + F
Sbjct: 1   MTQVDFYVLPETTSEARWLFACRLIEKVQRMGMDILVAVDNPEQAREFDELLWTFKPESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +    +       PV +T +  + N   +  L++ +S      D + ++  I+   
Sbjct: 61  IPHQLLDIQQPA-----PVQITYNQESGNHQGL--LLNLSSGIPPYFDRFARLSEIV-IQ 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           ++ +L+  R  +   K  GY  +
Sbjct: 113 EEKALKTSRERFSFYKGRGYPIE 135


>gi|167561906|ref|ZP_02354822.1| DNA polymerase III subunit chi [Burkholderia oklahomensis EO147]
          Length = 138

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   ++  P++LT     A     + L++  +        +++++ ++  +    
Sbjct: 59  --CAIDNAHAANTPIVLTADLERA--PHHQILLNLGADVPTQFARFDRLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|325278211|ref|ZP_08143704.1| DNA polymerase III subunit chi [Pseudomonas sp. TJI-51]
 gi|324096651|gb|EGB95004.1| DNA polymerase III subunit chi [Pseudomonas sp. TJI-51]
          Length = 142

 Score = 87.5 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY    D           L +  +  G RV + C     RD L+  LW +K + F
Sbjct: 1   MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRDELDLRLWRFKGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH     D  +  +   V L ++           L++  +   G V  +E+V  I+  +
Sbjct: 61  VPH-----DLAEVHADAGVALGLAEHA--GDHHDLLINLGASVPGFVGQFERVAEIVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
                +  R  +R  +  GYA
Sbjct: 113 APDIRQSARERFRFYREQGYA 133


>gi|56479506|ref|YP_161095.1| DNA polymerase III, chi subunit [Aromatoleum aromaticum EbN1]
 gi|56315549|emb|CAI10194.1| DNA polymerase III, chi subunit [Aromatoleum aromaticum EbN1]
          Length = 145

 Score = 87.1 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    +       L    Y  G+RV+V+         L++ LW+++   F+PH 
Sbjct: 1   MARVQFYHNAENPLALACELAARAYASGRRVAVRVPGPAAARELDQLLWSFEPLLFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V  +   ++  PV++  ++          L + A     D + + +++  I    +  
Sbjct: 60  --VMADAPLAARTPVVIGDAARTTRWPHAELLFNLADDIPPDFERF-RMLVEIVGQSEAM 116

Query: 121 LEWGRAHWRSLKNS 134
               RA W   K  
Sbjct: 117 KIPARARWAHYKQR 130


>gi|254495992|ref|ZP_05108898.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12]
 gi|254354780|gb|EET13409.1| DNA polymerase III, chi subunit [Legionella drancourtii LLAP12]
          Length = 118

 Score = 87.1 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y +G RV V C  ++  + L+E LWT+K+D F+PH +                 I  
Sbjct: 2   EKAYARGHRVYVFCNHQQDAELLDELLWTFKEDSFIPHNLQGEGPEPPPPI-----QIGY 56

Query: 82  LNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
            N        L++  +        +++V+ ++  + +   E  RA++R  +  G  
Sbjct: 57  GNEPRGFNDILLNLTNHIPPFYAKFKRVMELV-ANIEAEKEQSRANYREYRAKGCE 111


>gi|329909140|ref|ZP_08275004.1| DNA polymerase III subunit chi [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546547|gb|EGF31526.1| DNA polymerase III subunit chi [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 141

 Score = 87.1 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L++       R+ V  G  +   +L+  LWT+ +  F+PH 
Sbjct: 1   MTRVDFHSNIPDKISYVCRLVRKARHAHSRI-VLMGEPQQLAALDAALWTFSEHDFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             V      +   PV+L  +  +A+     + L++  S        +E++  I+   D  
Sbjct: 59  --VMAGDALAIHTPVILATTDADADALPHHQVLINLTSQPPPTFARFERLFEIV-ATDAA 115

Query: 120 SLEWGRAHWRSLKNSGYA 137
            +  GR  +R  +  GYA
Sbjct: 116 DIASGRDRYRFYQQRGYA 133


>gi|87198914|ref|YP_496171.1| DNA polymerase III chi subunit, HolC [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134595|gb|ABD25337.1| DNA polymerase III chi subunit, HolC [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 143

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 11/129 (8%)

Query: 4   LLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY+  +   E  L ++ ++    G+R+ V    E     + E LWT   + FL +G  
Sbjct: 3   VDFYQLTSDPAEQVLPLIARNTLAAGERLLVVSDDEAQLRRVGEALWTRLPETFLANGRA 62

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
                     QP+LL+ +   AN +    L D           +E+V  +        ++
Sbjct: 63  GTA---HDERQPILLSDAPEPANGAKFMALADGVWRE----GAFERVFLLFP---PARID 112

Query: 123 WGRAHWRSL 131
             R  WR L
Sbjct: 113 DARGCWRML 121


>gi|91788274|ref|YP_549226.1| DNA polymerase III subunit chi [Polaromonas sp. JS666]
 gi|91697499|gb|ABE44328.1| DNA polymerase III chi subunit, HolC [Polaromonas sp. JS666]
          Length = 145

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y  G  V V      V   L++ LW++    F+PH 
Sbjct: 1   MTEIAFHFNVPDKLAYGCRLLRKAYLSGASVVV-TAEADVLAQLDQSLWSFSPTEFVPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                  D  +  PVLL  +    + +    LV+         + +E+ + ++   D   
Sbjct: 59  CRSDAGEDNLAVTPVLL--AESLQDCARHEVLVNLGQGIPAGFERFERFIEVVAQGDDER 116

Query: 121 LEWGRAHWRSLKNSGYA 137
           L   R+ W+   + GY 
Sbjct: 117 L-AARSRWKHYTDRGYT 132


>gi|167569157|ref|ZP_02362031.1| DNA polymerase III subunit chi [Burkholderia oklahomensis C6786]
          Length = 138

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHTNVGDSLAYACRLLRKAYQAGQPVVV-CAEPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   S+  P++LT     A     + L++  +        +++++ ++  +    
Sbjct: 59  --CAIDNAHSANTPIVLTADLERA--PHHQILLNLGADVPTQFARFDRLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|237799871|ref|ZP_04588332.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022726|gb|EGI02783.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 142

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G +V + C +   R  L+  LW +K + F
Sbjct: 1   MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSNAAQRTDLDARLWRFKGEVF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LPHG     E D  +   V+L +   +   +    L++         + + +V  ++  +
Sbjct: 61  LPHG---DAESDHDAA--VVLGLGDDS--GTHQDLLINLDLNIPAFFNRFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D       R  +RS +  GY P 
Sbjct: 113 DPAIRLAARESFRSYRERGYPPQ 135


>gi|307294651|ref|ZP_07574493.1| DNA polymerase III chi subunit HolC [Sphingobium chlorophenolicum
           L-1]
 gi|306879125|gb|EFN10343.1| DNA polymerase III chi subunit HolC [Sphingobium chlorophenolicum
           L-1]
          Length = 145

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 10/138 (7%)

Query: 3   TLLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
            + FY+  ++  E  L  +     + G R+ V        + ++  LW    + FL HG 
Sbjct: 2   QVDFYQLSRDPVEQVLPAIAGRILDMGARLLVVAQEPERLERISAGLWAGPPESFLAHGR 61

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                    S QPVLL      AN +    L D   +   +   +E+  +     D  ++
Sbjct: 62  SGEG---AESMQPVLLAADCAAANGARHIALADG--LWREEALQFERAFYFF---DSETI 113

Query: 122 EWGRAHWRSL-KNSGYAP 138
           E  RA WR L K  G  P
Sbjct: 114 EGARASWRDLSKREGVTP 131


>gi|312959166|ref|ZP_07773685.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6]
 gi|311286936|gb|EFQ65498.1| DNA polymerase III, chi subunit [Pseudomonas fluorescens WH6]
          Length = 142

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +  +  G R+ + C     RD L+  LW +K + F
Sbjct: 1   MTQVDFYILPSADPLARLDFACKLTEKAWRMGHRIYLHCSDATQRDELDARLWRFKGESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PHG    +         ++L +            LV+           + +V  ++  +
Sbjct: 61  VPHGPAESEPEGL-----IVLGLGDHC--GDHHDLLVNLDLKVPPFAKAFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D    +  R  +R  +  GY 
Sbjct: 113 DPAIRQAARESFRFYREQGYP 133


>gi|254481340|ref|ZP_05094585.1| DNA polymerase III, chi subunit superfamily [marine gamma
           proteobacterium HTCC2148]
 gi|214038503|gb|EEB79165.1| DNA polymerase III, chi subunit superfamily [marine gamma
           proteobacterium HTCC2148]
          Length = 139

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY  +             L    Y +G  + +    +    +LNE LW+++   F
Sbjct: 1   MTRVGFYVVQAAAAGQRLEVAARLADKAYAQGHNIYINATDKPQAQALNELLWSFRPASF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +   ++ +      + +              L++           + +V  ++ T 
Sbjct: 61  MPHALAGEEQSEQ-----IAIGWGQD--PGKHSDLLINLQLEIPSFFSRFARVAEVV-TQ 112

Query: 117 DQGSLEWGRAHWRSLKNSGY 136
           D+ SL   R  W   K  GY
Sbjct: 113 DEDSLAALRKSWLFYKERGY 132


>gi|91794217|ref|YP_563868.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans
           OS217]
 gi|91716219|gb|ABE56145.1| DNA polymerase III chi subunit, HolC [Shewanella denitrificans
           OS217]
          Length = 153

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 18/151 (11%)

Query: 1   MRTLLFYRFKND----------WEY---NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEY 47
           M   +FY   +            E        L +  Y + + + + C  ++   +++E 
Sbjct: 1   MTQAIFYLMPDTPSPEHEPMPALEAVYLAACRLAERAYRQQQEIYIHCQDKQQAYAIDEL 60

Query: 48  LWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107
           LW ++   F+PH +    EG  +   PV +    L  N S    L++ A           
Sbjct: 61  LWQFEPTAFVPHNLKG--EGPMTGA-PVEIGFDKLGPNKSRQL-LINLADQMPAFAVNLP 116

Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
            ++     +D       R+ +R  +++G  P
Sbjct: 117 HIID-FVANDDELKRIARSRYRQYQSTGINP 146


>gi|107023403|ref|YP_621730.1| DNA polymerase III subunit chi [Burkholderia cenocepacia AU 1054]
 gi|116690485|ref|YP_836108.1| DNA polymerase III subunit chi [Burkholderia cenocepacia HI2424]
 gi|170733806|ref|YP_001765753.1| DNA polymerase III subunit chi [Burkholderia cenocepacia MC0-3]
 gi|254247473|ref|ZP_04940794.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia
           PC184]
 gi|105893592|gb|ABF76757.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia AU
           1054]
 gi|116648574|gb|ABK09215.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia
           HI2424]
 gi|124872249|gb|EAY63965.1| DNA polymerase III chi subunit, HolC [Burkholderia cenocepacia
           PC184]
 gi|169817048|gb|ACA91631.1| DNA polymerase III chi subunit HolC [Burkholderia cenocepacia
           MC0-3]
          Length = 138

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G + + ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSEHAAGTPIVLAADLDRAPHHHV--LLNLGATVPAQFARFERLLEVV-GNAPEE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|326386749|ref|ZP_08208370.1| DNA polymerase III chi subunit, HolC [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208802|gb|EGD59598.1| DNA polymerase III chi subunit, HolC [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 144

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 4   LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + FY+  ++  E  + ++ ++    G+R+ V    E+    ++  LW    D FL HG+ 
Sbjct: 3   VDFYQLTRDPAEQVVPLIARNTLGAGERLLVVSDDEQQLARISAGLWQKIPDSFLAHGLA 62

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
               G   + QP+LL  +    N +    L D       + +  ++V  +        ++
Sbjct: 63  ---GGPHDARQPILLGKAPQGDNGARFLALADG---VWRESEGMQRVFLLFP---PERID 113

Query: 123 WGRAHWRSL 131
             R  WR L
Sbjct: 114 DARRTWRLL 122


>gi|206561013|ref|YP_002231778.1| DNA polymerase III subunit chi [Burkholderia cenocepacia J2315]
 gi|198037055|emb|CAR52976.1| putative DNA polymerase III chi subunit [Burkholderia cenocepacia
           J2315]
          Length = 138

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G + + ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSEHAAGTPIVLAADLDRAPHHHV--LLNLGATVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|85710394|ref|ZP_01041458.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1]
 gi|85687572|gb|EAQ27577.1| DNA polymerase III subunit chi [Erythrobacter sp. NAP1]
          Length = 138

 Score = 86.3 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 4   LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + F++  ++  +  + ++ Q   + G+R+ V   + + R++++  LW  + + FL +G  
Sbjct: 3   VDFWQLSRDPVDKVVALIAQRVLDSGERLLVVSKNSQQREAISRTLWKAEPESFLANGEA 62

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
                D    QP+LL+ S   AN ++     D       +   +E+   +    D  ++E
Sbjct: 63  SAAGAD---RQPILLSASCEAANAASHVIFADG---EYREPTGFERAFLLF---DDETVE 113

Query: 123 WGRAHWRSLKN 133
             R  W+SL++
Sbjct: 114 AARGTWKSLES 124


>gi|330818017|ref|YP_004361722.1| DNA polymerase III subunit chi [Burkholderia gladioli BSR3]
 gi|327370410|gb|AEA61766.1| DNA polymerase III subunit chi [Burkholderia gladioli BSR3]
          Length = 138

 Score = 86.0 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y  G+ V V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYLAGQAVVV-CAEPARLRTLDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   +S  P++LT     A    +  L++  +        + +++ ++  +    
Sbjct: 59  --CSVDSPQASQTPIVLTTDLSRAPHDGV--LLNLGAEVPAQFARFARLLEVV-GNAPEE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|170697651|ref|ZP_02888739.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria
           IOP40-10]
 gi|170137399|gb|EDT05639.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria
           IOP40-10]
          Length = 138

 Score = 86.0 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSAHAAGTPIVLAADLDQAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|170723399|ref|YP_001751087.1| DNA polymerase III subunit chi [Pseudomonas putida W619]
 gi|169761402|gb|ACA74718.1| DNA-directed DNA polymerase [Pseudomonas putida W619]
          Length = 142

 Score = 85.6 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY    D           L +  +  G RV + C     R  L++ LW +K + F
Sbjct: 1   MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRSELDQRLWRFKGEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +             V L ++           L++  +   G V  +E+V  I+   
Sbjct: 61  VPHDLAEAHADAT-----VALGLADNA--GEHRDLLINLGADVPGFVGQFERVAEIVVEQ 113

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
                +  R  +R  +  GYA
Sbjct: 114 -ADIRQSARERFRFYREQGYA 133


>gi|109899864|ref|YP_663119.1| DNA polymerase III chi subunit, HolC [Pseudoalteromonas atlantica
           T6c]
 gi|109702145|gb|ABG42065.1| DNA polymerase III, chi subunit [Pseudoalteromonas atlantica T6c]
          Length = 156

 Score = 85.6 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 15/150 (10%)

Query: 1   MRTLLFYRFKNDWEYN---------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51
           M  + FY  + + E              L    +   +R  V C S+   +  +E LW  
Sbjct: 1   MSKVTFYLLEQEAEATSQQPAHLALACQLAAQCFSNKQRCVVMCQSQAQAEQFDELLWQL 60

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
             D F+PH +         +  PV +       +      L++ A         + ++  
Sbjct: 61  PNDRFVPHNLTGEG---PQAGTPVEICWQ--RPSQFNKPVLINLADNMPDFHGKFSRIYD 115

Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +   D    +  R  ++  + +G+  D +
Sbjct: 116 FVPAAD-ALKQQARERYKHYRAAGHQLDTL 144


>gi|115352565|ref|YP_774404.1| DNA polymerase III subunit chi [Burkholderia ambifaria AMMD]
 gi|115282553|gb|ABI88070.1| DNA polymerase III chi subunit, HolC [Burkholderia ambifaria AMMD]
          Length = 138

 Score = 85.6 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVVA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSAHAAGTPIVLAADLDQAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|146308543|ref|YP_001189008.1| DNA polymerase III, chi subunit [Pseudomonas mendocina ymp]
 gi|145576744|gb|ABP86276.1| DNA polymerase III, chi subunit [Pseudomonas mendocina ymp]
          Length = 139

 Score = 85.6 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L    +  G  V V+   E     L+E LW +K + F
Sbjct: 1   MPRIEFYVLSSSDAEGRLRAACQLALKAWGAGLPVFVRGSDEAQCIELDELLWRFKAERF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +        +   PV+L +  + ++   +  L++  S     V+ + +++ I+N  
Sbjct: 61  VPHDLHRD-----APQAPVVLGVDEVPSHEQGV--LINLGSSLSPHVERFSRIIEIVN-Q 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
               L   R ++R+ +  GY P
Sbjct: 113 QPELLSACRENFRNYRQRGYDP 134


>gi|238028368|ref|YP_002912599.1| DNA polymerase III subunit chi [Burkholderia glumae BGR1]
 gi|237877562|gb|ACR29895.1| DNA polymerase III subunit chi [Burkholderia glumae BGR1]
          Length = 138

 Score = 85.2 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y  G+ V V C       +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYLAGQSVVV-CAEPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                +   +   P++LT     A    +   ++  +        + +++ ++  +    
Sbjct: 59  --CSIDSPLAGQTPIVLTTDLSRAPHDGVV--LNLGAEVPAQFARFARLLEVV-GNAPEE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|171316726|ref|ZP_02905938.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria MEX-5]
 gi|171098076|gb|EDT42891.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria MEX-5]
          Length = 138

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSAHAAGTPIVLAADLDQAPHHHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|83644753|ref|YP_433188.1| DNA polymerase III subunit chi [Hahella chejuensis KCTC 2396]
 gi|83632796|gb|ABC28763.1| DNA polymerase III, chi subunit [Hahella chejuensis KCTC 2396]
          Length = 141

 Score = 85.2 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 1   MRTLLFYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M    F+   +      ++ L  L +  Y  G R+ + C   +  + L++ L++++ + F
Sbjct: 1   MPKADFHLLSSGDIAQRDFYLCRLCEKIYRLGHRIYILCKDSKELEHLDDLLYSFRPESF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH ++       SS  PV L        T +   +++         D   +V+ ++   
Sbjct: 61  IPHSIEPE---PPSSDIPVFLCTRL--PETISTEVVINLTEAPPDKAD---RVIELVTG- 111

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D G+    R  ++  K  G+ 
Sbjct: 112 DPGARAKSRKVYKLYKQLGFE 132


>gi|332307894|ref|YP_004435745.1| DNA-directed DNA polymerase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175223|gb|AEE24477.1| DNA-directed DNA polymerase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 156

 Score = 84.8 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 15/150 (10%)

Query: 1   MRTLLFYRFKNDWEYN---------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51
           M  + FY  + + E              L    +   +R  V C S+   +  +E LW  
Sbjct: 1   MSKVTFYLLEQEAEATSQQPAHLALACQLAAQCFSNKQRCVVMCQSQAQAEQFDELLWQL 60

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
             D F+PH +         +  PV +       +      L++ A         + ++  
Sbjct: 61  PNDRFVPHNLTGEG---PQAGTPVEICWQ--RPSQFNKPVLINLADNMPDFHGKFSRIFD 115

Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +    +   +  R  ++  + +G+  D +
Sbjct: 116 FVPAA-ETLKQQARERYKHYRAAGHQLDTL 144


>gi|172061424|ref|YP_001809076.1| DNA polymerase III subunit chi [Burkholderia ambifaria MC40-6]
 gi|171993941|gb|ACB64860.1| DNA polymerase III chi subunit HolC [Burkholderia ambifaria MC40-6]
          Length = 138

 Score = 84.4 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y+ G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYQAGQPVVVLA-EPVRLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G +   ++  P++L      A    +  L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSAHAAGTPIVLAADLDQAPHYHV--LLNLGAAVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|225025636|ref|ZP_03714828.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC
           23834]
 gi|224941586|gb|EEG22795.1| hypothetical protein EIKCOROL_02538 [Eikenella corrodens ATCC
           23834]
          Length = 173

 Score = 84.4 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M T+ FY    D E     L +   E G RV   CG      +L+  LW ++ + FLPH 
Sbjct: 27  MPTVTFYTHVADLETFACRLAKRAVEAGCRVLAWCGGTEQLATLDRQLWAFEAESFLPHE 86

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDE-ASMHIGDVDYYEKVVFIINTDDQG 119
           + +  E       P+LL          +   +++  A +     +  E+V+ I+    + 
Sbjct: 87  IWLPKENPCPIEPPILLAEGEALPTAESSLVVLNLSADLWSHAPNTPERVLEIV-GRSET 145

Query: 120 SL 121
            L
Sbjct: 146 QL 147


>gi|90021018|ref|YP_526845.1| DNA polymerase III, chi subunit [Saccharophagus degradans 2-40]
 gi|89950618|gb|ABD80633.1| DNA polymerase III chi subunit, HolC [Saccharophagus degradans
           2-40]
          Length = 149

 Score = 84.0 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 12/146 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY      + +       L +    +G +V +    E    +++E LWT + + F
Sbjct: 1   MTRIDFYVLSASDDKSRWQFACRLAEKAVSRGNKVLIATQDEAASRAVDELLWTQRPESF 60

Query: 57  LPHG-----VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
           +PH       D       ++  PV++T    +        LV+  +        ++++  
Sbjct: 61  VPHHIVGQNTDGQSSYAPTAKPPVVITHDLDD--IDHHDVLVNIRTTRPEQFSRFDRLAE 118

Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYA 137
           I+       LE  R  +   K  GY 
Sbjct: 119 IV-IQQPEVLENTRQSYAFYKQRGYP 143


>gi|307824331|ref|ZP_07654557.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum
           SV96]
 gi|307734711|gb|EFO05562.1| DNA polymerase III chi subunit HolC [Methylobacter tundripaludum
           SV96]
          Length = 160

 Score = 84.0 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 22/154 (14%)

Query: 1   MRTLLFYRFKN-DWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +   E        L++  Y  G    V   S     ++++ LWT++   F
Sbjct: 1   MAEVSFYILPSESLEERYLFACKLIEKAYRSGSFCYVLTDSAEQSRTIDDLLWTFRAGSF 60

Query: 57  LPHGVDVGDEGDFSSF---------------QPVLLTISSLNANTSTIRFLVDEASMHIG 101
           +PH +  G+  D +                 + +L+       +   + F  + +S +  
Sbjct: 61  IPHQIYTGEPPDIARDGVYAAGSPGASAATEKVILIGSLDAPEHWQKVLF--NLSSRYPD 118

Query: 102 DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                E+++ I++ + + + E GR  +R  + SG
Sbjct: 119 VGPQTERILEILD-NSETTKEAGRNRYRRYQQSG 151


>gi|119476405|ref|ZP_01616756.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2143]
 gi|119450269|gb|EAW31504.1| DNA polymerase III subunit chi [marine gamma proteobacterium
           HTCC2143]
          Length = 145

 Score = 84.0 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 1   MRTLLFYRF--KNDWEYNL--LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY     +  + +L    L +  ++ G  + +         +L+E LW+W+   F
Sbjct: 1   MTKIDFYILPYDSSEQRHLFACRLAEKAFKLGNEIYIHGSDGDQAKALDELLWSWRNTSF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNA-NTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           +PH +D     +    QP+ +        +      L++ +         +E+V  I+  
Sbjct: 61  IPHKIDDNSTDE----QPLHIGFGKDKQMSGDHNGLLINLSDHVPEFFSRFERVSEIVV- 115

Query: 116 DDQGSLEWGRAHWRSLKNSGY 136
            D    E  RA++R  KN GY
Sbjct: 116 QDSAVTESTRANYRFYKNRGY 136


>gi|325982820|ref|YP_004295222.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212]
 gi|325532339|gb|ADZ27060.1| DNA polymerase III chi subunit HolC [Nitrosomonas sp. AL212]
          Length = 159

 Score = 84.0 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 4/137 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  +LFY   N+       L     ++  RV +   + ++ D L++ LWT+    F+PH 
Sbjct: 14  MTQILFYSGSNNKLQTTCRLCAKAIQQHMRVLIYVPASKLLDQLDQLLWTFSSTSFIPH- 72

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
            ++ D+    S  PV+L+   +  N+     L++         D +++++ I  T  +  
Sbjct: 73  CNILDDAKLVSATPVILS-GQIQVNSP-FDVLINLHDQSPHLFDQFDRLIEIAGTSHEDK 130

Query: 121 LEWGRAHWRSLKNSGYA 137
           L   R  +R  KN+GY 
Sbjct: 131 L-AARERYRFYKNAGYE 146


>gi|146329752|ref|YP_001209371.1| DNA polymerase III chi subunit [Dichelobacter nodosus VCS1703A]
 gi|146233222|gb|ABQ14200.1| DNA polymerase III chi subunit [Dichelobacter nodosus VCS1703A]
          Length = 141

 Score = 83.6 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 6   FYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY   +         +  L +      +  +V C  E +   LN  LW+++ + F+PH +
Sbjct: 5   FYVLNSQTIAARLHFVCRLCEKAMAARQHTAVLCADEAMAAQLNALLWSFRAESFIPHAL 64

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   ++   V+L I+   A   T  F+   A          ++V  +++      L
Sbjct: 65  SDDALAAHAA---VMLLIAPERA-AQTNVFINLSADELPDIPQGCQRVFEVVD-QSPAVL 119

Query: 122 EWGRAHWRSLKNSGYAPDVI 141
              R  ++  +  G  P+ +
Sbjct: 120 AVTRRRFKHYRARGITPETV 139


>gi|332284930|ref|YP_004416841.1| DNA polymerase III, chi subunit [Pusillimonas sp. T7-7]
 gi|330428883|gb|AEC20217.1| DNA polymerase III, chi subunit [Pusillimonas sp. T7-7]
          Length = 143

 Score = 83.3 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     +       +++  Y  G+RV V     +  +  +  LW +    F+PH 
Sbjct: 1   MSRVDFAFGAPNRLRTACEVVRKHYSAGRRVLVYTQDRQRLERFDHLLWGFDPTAFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNAN---TSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
             V  +   ++  PV LT +   A+        +L++         +++++++ I++  +
Sbjct: 60  --VMTDDPLAAQTPVQLTAAPPVASPTADGQQPWLLNLDLSCPPGYEHFDRILEIVSDHE 117

Query: 118 QGSLEWGRAHWRSLKNSGYA 137
              L   R  W+  K +G+A
Sbjct: 118 DDKL-AARERWQQYKVAGHA 136


>gi|311281183|ref|YP_003943414.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1]
 gi|308750378|gb|ADO50130.1| DNA-directed DNA polymerase [Enterobacter cloacae SCF1]
          Length = 147

 Score = 83.3 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY           +  E  +  +  + +  GKRV V C  E+    L+E LWT  
Sbjct: 1   MKNATFYLLDNDNTVDGLSTVEQLVCEIAAERWRAGKRVLVACEDEQQAIRLDEALWTRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+S    L+   +        + +V+  
Sbjct: 61  PESFVPHNLAGEGPRGGA---PVELAWPQKR-NSSPRDVLISLRTGFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-HEDSLKQLARERYKAYRLAGFN 140


>gi|300690721|ref|YP_003751716.1| DNA polymerase III chi subunit [Ralstonia solanacearum PSI07]
 gi|299077781|emb|CBJ50419.1| DNA polymerase III chi subunit [Ralstonia solanacearum PSI07]
          Length = 142

 Score = 83.3 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G+    ++ +  LWT+ +  FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G     ++  P+LL  ++   + +     LV+ ++        + +++ I+  DD+ 
Sbjct: 59  --CGLRHPLAAQTPILLADAAEPLDDAPHHDILVNLSNATPPLFARFARLIEIV-GDDEA 115

Query: 120 SLEWG 124
                
Sbjct: 116 DRAAA 120


>gi|294341184|emb|CAZ89585.1| putative DNA polymerase III chi subunit, HolC [Thiomonas sp. 3As]
          Length = 151

 Score = 82.9 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
             LL+   ++G RV V      +   L+  LWT++   F+PH   V  +   +   PV+L
Sbjct: 29  CGLLRTATQRGARVLVAAPEP-LLTELDPLLWTFQPGSFVPH---VWQDDPLADKTPVIL 84

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
                      +  LV+     +   +  E+V+ +++ +        R   R+ + +G+ 
Sbjct: 85  APQPDLPRAGRVTALVNLGPDLVTGWESLERVIELVSENGPDK-PAARERLRAYRAAGFD 143

Query: 138 PDVI 141
           P +I
Sbjct: 144 PTII 147


>gi|296282387|ref|ZP_06860385.1| DNA polymerase III chi subunit [Citromicrobium bathyomarinum JL354]
          Length = 148

 Score = 82.9 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 4   LLFYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           + F+   ++  E  + ++ +     G R  V  G    R+S++  LW  + + FL +G  
Sbjct: 3   VDFWLLSRDPAERVVAMIAERVLADGGRALVVSGDAAQRESVSRTLWEARPEAFLANG-- 60

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDE---ASMHIGDVDYYEKVVFIINTDDQG 119
               G   + QP+L+  + ++ N +T   L D    A    G+   +E+V  +    D  
Sbjct: 61  -QAGGAHDADQPILIGEACVSTNAATACILADGHWRAEALAGE--TFERVFLLF---DDE 114

Query: 120 SLEWGRAHWRSLKN 133
             +  R  WR +  
Sbjct: 115 QRDAARTAWREVSA 128


>gi|163750101|ref|ZP_02157344.1| DNA polymerase III, chi subunit [Shewanella benthica KT99]
 gi|161330158|gb|EDQ01140.1| DNA polymerase III, chi subunit [Shewanella benthica KT99]
          Length = 154

 Score = 82.9 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 1   MRTLLFYRF----KNDWEYNL------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50
           M   LFY       +  E  L        L QD Y   + V V         +++E LW 
Sbjct: 1   MPNALFYVMPDEANSPTEATLQVHRLACELAQDAYVNQQLVYVHTQDREQAYAVDELLWQ 60

Query: 51  WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110
           ++ + F+PH +    EG  +   PV +   SL  N +    L++ A         + +++
Sbjct: 61  FEPNSFVPHNLKG--EGPLTGA-PVEIGFDSLGPNKNRHL-LINLADQVPSFAVNFGQII 116

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135
               T+D G     R  +R  K+ G
Sbjct: 117 D-FVTNDAGHKTIARDRYRQYKSLG 140


>gi|94311738|ref|YP_584948.1| DNA polymerase III subunit chi [Cupriavidus metallidurans CH34]
 gi|93355590|gb|ABF09679.1| DNA polymerase III chi subunit [Cupriavidus metallidurans CH34]
          Length = 144

 Score = 82.9 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L++  Y  G++V V     +    L+  LW++    FLPH 
Sbjct: 1   MTRIDFHSNVPDTLTYVCRLVRKAYGAGQKVVVHGA-PQQLAQLDARLWSFSPLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G +   ++  P++L  +         + LV+ A         +E+++ ++    + 
Sbjct: 59  --CGVDSPNAAVTPIILAAALDGV--PHHQLLVNLAPEAPAQFASFERLIEVVGATPEA 113


>gi|299065990|emb|CBJ37171.1| DNA polymerase III chi subunit [Ralstonia solanacearum CMR15]
          Length = 142

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G     ++ +  LWT+ +  FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGDRAALEAFDAQLWTFSQLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G     ++  P+LL  +S   + +     LV+ +         + +++ I+  DD  
Sbjct: 59  --CGLRHRLAAQTPILLADASEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDDA 115

Query: 120 SLEWG 124
                
Sbjct: 116 ERAAA 120


>gi|17547133|ref|NP_520535.1| DNA polymerase III subunit chi [Ralstonia solanacearum GMI1000]
 gi|17429435|emb|CAD16121.1| probable dna polymerase III (chi subunit) protein [Ralstonia
           solanacearum GMI1000]
          Length = 142

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G+    ++ +  LWT+ +  FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G     ++  P+LL  +S   + +     LV+ +         + +++ I+  DD+ 
Sbjct: 59  --CGLRHRLAAQTPILLADASEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDEA 115

Query: 120 SLEWG 124
                
Sbjct: 116 ERAAA 120


>gi|294139601|ref|YP_003555579.1| DNA polymerase III subunit chi [Shewanella violacea DSS12]
 gi|293326070|dbj|BAJ00801.1| DNA polymerase III, chi subunit [Shewanella violacea DSS12]
          Length = 156

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 1   MRTLLFYRF----KNDWEYN------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50
           M   LFY       +  E           L QD Y K + V V    +    +++E LW 
Sbjct: 1   MPNALFYVMPDEANSPTEATEQVHRLACELAQDAYVKQQLVYVHTRDKEQAYAVDELLWQ 60

Query: 51  WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110
           ++ + F+PH +    EG  +   PV +   +L  N +    L++ A         + +++
Sbjct: 61  FEPNSFVPHNLKG--EGPLTGA-PVEIGFDTLGPNKNRHL-LINLADQVPSFAVNFGQII 116

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135
                +D G     R  +R  K+ G
Sbjct: 117 D-FVANDTGHKTIARDRYRQYKSLG 140


>gi|307543944|ref|YP_003896423.1| DNA polymerase III subunit chi [Halomonas elongata DSM 2581]
 gi|307215968|emb|CBV41238.1| DNA polymerase III subunit chi [Halomonas elongata DSM 2581]
          Length = 151

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L +    KG R+ +    E +  +L++ LW ++ D +
Sbjct: 1   MTQVDFYILPDTTLDARLEFACRLAETIVNKGYRLHLHAEDEAMARALDDRLWDFRPDAY 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINT 115
           LPH +   ++ D     P  +      +      + +++           +E+V  IIN 
Sbjct: 61  LPHALLGSEQADSV---PATIGWEEPPSPGEPGTQAMLNLHPDIPEWFSRFERVAEIINQ 117

Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137
             Q  L   R  W++ K  GY 
Sbjct: 118 H-QEVLTAKRDCWQTYKKRGYP 138


>gi|319793493|ref|YP_004155133.1| DNA polymerase iii chi subunit holc [Variovorax paradoxus EPS]
 gi|315595956|gb|ADU37022.1| DNA polymerase III chi subunit HolC [Variovorax paradoxus EPS]
          Length = 147

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 3/138 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEY-EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + F+    D       L++     +G RV V  G     D+++  LW      F+ H
Sbjct: 1   MTEIGFHFNAPDKLNYACRLVRKAVNARGLRVVV-VGDAEALDAVDAALWQLSPVDFVAH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                     +    +L +  +  A+      LV+         + +E+++ I+ +D+  
Sbjct: 60  CRSDAQPHVMARSPVILASEGADAASLPHREMLVNLGLEVPAGFERFERLIDIV-SDEAN 118

Query: 120 SLEWGRAHWRSLKNSGYA 137
             + GR+ WR   + GY 
Sbjct: 119 DRQVGRSRWRHYADRGYT 136


>gi|121605068|ref|YP_982397.1| DNA polymerase III subunit chi [Polaromonas naphthalenivorans CJ2]
 gi|120594037|gb|ABM37476.1| DNA polymerase III, chi subunit [Polaromonas naphthalenivorans CJ2]
          Length = 146

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y  G  V+V      V   L+  LW++    F+PH 
Sbjct: 1   MTEIAFHFNVPDKLAYGCRLLRKAYLSGATVAVIA-EPEVLAELDALLWSFSATEFVPHC 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                 G  ++  PV+L  S  +     I  LV+      G  + +E+++ +++      
Sbjct: 60  TGAASPGTLAA-TPVVLAASPADCPGRDI--LVNLGQGVPGGFEGFERLIEVVSIH-PED 115

Query: 121 LEWGRAHWRSLKNSGYA 137
           +  GR  W+     GY 
Sbjct: 116 VPAGRDRWKHYAARGYT 132


>gi|78067265|ref|YP_370034.1| DNA polymerase III subunit chi [Burkholderia sp. 383]
 gi|77968010|gb|ABB09390.1| DNA polymerase III chi subunit, HolC [Burkholderia sp. 383]
          Length = 138

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       LL+  Y  G+ V V         +L+E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLAYACRLLRKAYLAGQPVVVLA-EPARLRALDERLWTFSPLDFIPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              G + + ++  P++L        T     L++  +        +E+++ ++  +    
Sbjct: 59  --CGVDSEHAAGTPIVLAADLDR--TPHHHVLLNLGAAVPAQFARFERLLEVV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|77457215|ref|YP_346720.1| DNA polymerase III subunit chi [Pseudomonas fluorescens Pf0-1]
 gi|77381218|gb|ABA72731.1| putative DNA polymerase III chi subunit [Pseudomonas fluorescens
           Pf0-1]
          Length = 142

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 12/141 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY   +            L    +  G R+ + C     RD L+  LW +K + F
Sbjct: 1   MTKVDFYILPSADPSARLDFACKLTDKAWRMGHRIYLHCSDAAQRDDLDARLWAFKGETF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PHG    +         ++L +            LV+           + +V  ++  +
Sbjct: 61  VPHGPAESEPEGL-----IVLGVGEDC--GQHTDLLVNLDLKVPVFASKFARVAEVVV-E 112

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           D       R  +R  +  GY 
Sbjct: 113 DPAIRTAARESFRFYREQGYP 133


>gi|83746691|ref|ZP_00943740.1| DNA polymerase III, chi subunit [Ralstonia solanacearum UW551]
 gi|207742610|ref|YP_002259002.1| dna polymerase III (chi subunit) protein [Ralstonia solanacearum
           IPO1609]
 gi|83726644|gb|EAP73773.1| DNA polymerase III, chi subunit [Ralstonia solanacearum UW551]
 gi|206594004|emb|CAQ60931.1| dna polymerase III (chi subunit) protein [Ralstonia solanacearum
           IPO1609]
          Length = 142

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G+    ++ +  LWT+ +  FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G     ++  P+LL   S   + +     L++ +         + +++ I+  DD+ 
Sbjct: 59  --CGLRHPLAAQTPILLADISEPLDDAPHHDILINLSDATPPLFARFARLIEIV-GDDEA 115

Query: 120 SLEWG 124
                
Sbjct: 116 DRTAA 120


>gi|300703339|ref|YP_003744941.1| DNA polymerase III chi subunit [Ralstonia solanacearum CFBP2957]
 gi|299071002|emb|CBJ42311.1| DNA polymerase III chi subunit [Ralstonia solanacearum CFBP2957]
          Length = 142

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G+    ++ +  LWT+ +  FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G     ++  P+LL   S   + +     LV+ +         + +++ I+  DD+ 
Sbjct: 59  --CGLRHPLAAQTPILLADISEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDEA 115

Query: 120 SLEWG 124
                
Sbjct: 116 DRTAA 120


>gi|257465132|ref|ZP_05629503.1| DNA polymerase III subunit chi [Actinobacillus minor 202]
 gi|257450792|gb|EEV24835.1| DNA polymerase III subunit chi [Actinobacillus minor 202]
          Length = 140

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M+ + FY    D    +   L    +  GKRV + C +E+    ++E LW  + D F+PH
Sbjct: 1   MKQVQFYVLTQDNIYEHTCDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +            P+ ++      N      L+         V  + +V+  +    + 
Sbjct: 61  NLSGEV---TQYATPIEISWKGKR-NAQRRELLISLQQDIPEYVASFTQVIEFVPIH-EA 115

Query: 120 SLEWGRAHWRSLKNSG 135
                R  ++  +  G
Sbjct: 116 EKTQARERYKQYRQMG 131


>gi|91774579|ref|YP_544335.1| DNA polymerase III, chi subunit [Methylobacillus flagellatus KT]
 gi|91708566|gb|ABE48494.1| DNA polymerase III, chi subunit [Methylobacillus flagellatus KT]
          Length = 154

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    +   ++  L     ++G+R+ V   +++  + L  +LW+    GFLPH 
Sbjct: 1   MTRVDFFFNVPNKAAHVASLSSRAVQRGRRLMVLASTQQAAEQLGSFLWSSPPTGFLPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  PV++           I  L++  S +      + +++ I+   ++  
Sbjct: 60  --CHATHPRAAETPVIIDWRHEPLPHDDI--LINLDSQYPPFFSRFRRLIEIV-GLEEED 114

Query: 121 LEWGRAHWRSLKNSGYA 137
               R  +R  ++ GY 
Sbjct: 115 RAAARERYRFYRDRGYE 131


>gi|160898979|ref|YP_001564561.1| DNA polymerase III chi subunit HolC [Delftia acidovorans SPH-1]
 gi|160364563|gb|ABX36176.1| DNA polymerase III chi subunit HolC [Delftia acidovorans SPH-1]
          Length = 143

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L +       ++ V  GS  +  +L+  LW+     FL H 
Sbjct: 1   MTEVAFHFNAPDKLAYVCRLARKALRHRTQLVVL-GSPPLLKALSPRLWSVSPTDFLAHA 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
              GD  D  +F P++L      A       LV+         + + +VV +++  D+  
Sbjct: 60  -GEGDGADIMAFSPIVLLERLDGA--PHHDMLVNLGGEVPEGFERFARVVEVVSATDEED 116

Query: 121 LEWGRAHWRSLKNSGYA 137
               R  W+     G +
Sbjct: 117 RHLARQRWKHYAAQGIS 133


>gi|34498368|ref|NP_902583.1| DNA polymerase III subunit chi [Chromobacterium violaceum ATCC
           12472]
 gi|34104222|gb|AAQ60581.1| DNA polymerase III, chi subunit [Chromobacterium violaceum ATCC
           12472]
          Length = 141

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    D +     L      K +R+ +   SER  +  +  LW++    F+PH 
Sbjct: 1   MSRIDFYTNVADPQAFACRLADTVQRKKERLLIWLDSERSVEVFSNRLWSFGDTRFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                    ++  PV L  S    +  +   L++       +   +E+++ I+   D  S
Sbjct: 60  --CRLGAPEAAETPVWLAASL--PDDLSHPVLLNLGPQLPFEFGRFERILEIV-GRDPES 114

Query: 121 LEWGRAHWRSLKNSGYAPD 139
           L   R  +R+ +  G   +
Sbjct: 115 LATARERFRAYREHGCEIE 133


>gi|207721409|ref|YP_002251850.1| DNA polymerase III subunit chi [Ralstonia solanacearum MolK2]
 gi|206586568|emb|CAQ17155.1| dna polymerase III (chi subunit) protein [Ralstonia solanacearum
           MolK2]
          Length = 142

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G+    ++ +  LWT+ +  FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGNRAALEAFDAQLWTFSQLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G     ++  P+LL   +   + +     LV+ +         + +++ I+  DD+ 
Sbjct: 59  --CGLRHPLAAQTPILLADIAEPLDDAPHHDILVNLSDATPPLFARFARLIEIV-GDDEA 115

Query: 120 SLEWG 124
                
Sbjct: 116 DRTAA 120


>gi|254283213|ref|ZP_04958181.1| DNA polymerase III subunit chi [gamma proteobacterium NOR51-B]
 gi|219679416|gb|EED35765.1| DNA polymerase III subunit chi [gamma proteobacterium NOR51-B]
          Length = 116

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y +G RV +   +E    ++++ LW+ K   F+PH +      +      V +T   
Sbjct: 3   EKAYHRGHRVLINADTESNAKTIDDLLWSQKAVSFVPHALMSSTTPED-----VTITWGQ 57

Query: 82  LNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
              N   +  L++ A         +++V  ++ + D  +L   R  WR  ++ GY 
Sbjct: 58  EPDNHDDV--LINLALTAPPWFSRFQRVAEVV-SQDPSALAALRDAWRFYRDRGYP 110


>gi|237749134|ref|ZP_04579614.1| DNA polymerase III chi subunit [Oxalobacter formigenes OXCC13]
 gi|229380496|gb|EEO30587.1| DNA polymerase III chi subunit [Oxalobacter formigenes OXCC13]
          Length = 141

 Score = 81.3 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           RV +      + + L++ LWT+    FLPH V        ++  PV+LT S  +      
Sbjct: 32  RVVIYATDRNLLNRLDDTLWTFSDSDFLPHAVLGDR---HAARCPVILTSSDTDE-LPHS 87

Query: 90  RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           + L++ +         +E+++ +++T D    E GR  +   +  GY 
Sbjct: 88  QILLNLSPDIPAFYAQFERLLELVST-DPADTEAGRQRYVHYRERGYT 134


>gi|240948837|ref|ZP_04753193.1| DNA polymerase III subunit chi [Actinobacillus minor NM305]
 gi|240296652|gb|EER47263.1| DNA polymerase III subunit chi [Actinobacillus minor NM305]
          Length = 140

 Score = 81.0 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M+ + FY    D        L    +  GKRV + C +E+    ++E LW  + D F+PH
Sbjct: 1   MKQVQFYVLTQDNIYEQACDLAAKAWRLGKRVLIACETEQQAFEIDERLWAREPDSFVPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
            +            P+ ++      N      L+         V  + +V+  +    + 
Sbjct: 61  NLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQQAIPEYVASFTQVIEFVPIQ-ET 115

Query: 120 SLEWGRAHWRSLKNSG 135
                R  ++  +  G
Sbjct: 116 EKAQARERYKQYRQMG 131


>gi|296137007|ref|YP_003644249.1| DNA polymerase III chi subunit HolC [Thiomonas intermedia K12]
 gi|295797129|gb|ADG31919.1| DNA polymerase III chi subunit HolC [Thiomonas intermedia K12]
          Length = 141

 Score = 81.0 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
             LL+   ++G RV V      +   L+  LWT++   F+PH   V  +   +   PV+L
Sbjct: 19  CGLLRTATQRGARVLVAAPEP-LLTELDPLLWTFQPGSFVPH---VWQDDPLADKTPVIL 74

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
                      +  LV+     +   +  E+V+ +++ +        R   R+ + +G+ 
Sbjct: 75  APLPDLPRAGRVTALVNLGPDLVTGWESLERVIELVSENGPDK-PAARERLRAYRAAGFD 133

Query: 138 PDVI 141
           P +I
Sbjct: 134 PAII 137


>gi|161729084|ref|NP_221220.2| DNA polymerase III subunit chi [Rickettsia prowazekii str. Madrid
           E]
 gi|292572538|gb|ADE30453.1| DNA polymerase III chi subunit HolC [Rickettsia prowazekii Rp22]
          Length = 154

 Score = 80.6 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 9/120 (7%)

Query: 1   MRTLLFYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M+    Y   N+     +L L++  Y    +  +       ++ LN+ LWT+ +  F+PH
Sbjct: 1   MQQFSIYHTSNELFLKAILRLIEKCYYSNFKSVILTTDVHQQEMLNKNLWTYSRKQFIPH 60

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV---DEASMHI--GDVDYYEKVVFIIN 114
           G          + QP+ +T    N N +++  ++   D A +      +  +++++ I +
Sbjct: 61  GSKF---DPQPAKQPIYITDELQNPNNASVLVIISPTDIAKILQVKEYIKVFKRIIIITD 117


>gi|6831725|sp|Q9ZC94|Y872_RICPR RecName: Full=Uncharacterized protein RP872
 gi|3861397|emb|CAA15296.1| unknown [Rickettsia prowazekii]
          Length = 165

 Score = 80.6 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 9/120 (7%)

Query: 1   MRTLLFYRFKNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M+    Y   N+     +L L++  Y    +  +       ++ LN+ LWT+ +  F+PH
Sbjct: 12  MQQFSIYHTSNELFLKAILRLIEKCYYSNFKSVILTTDVHQQEMLNKNLWTYSRKQFIPH 71

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV---DEASMHI--GDVDYYEKVVFIIN 114
           G          + QP+ +T    N N +++  ++   D A +      +  +++++ I +
Sbjct: 72  GSKF---DPQPAKQPIYITDELQNPNNASVLVIISPTDIAKILQVKEYIKVFKRIIIITD 128


>gi|260221419|emb|CBA29963.1| hypothetical protein Csp_A14780 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 144

 Score = 80.6 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    +    +  LL+    +G R++V          L+  LW      FL H 
Sbjct: 1   MTDIAFHFGAPNKLEYVGRLLRKAVARGARLTVLAP-PAQVQYLDASLWATSPTDFLVHA 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNA--NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           VD  D     +  PV+LT     A  N S    LV+  +    D   +E+V+ +++ DD 
Sbjct: 60  VD--DGQAPHAMCPVVLTSRVHGALKNHS---VLVNLTTAVPADFVQFERVIEVVSVDDD 114

Query: 119 GSLEWGRAHWRSLKNSGYA 137
                 R  WR     GY 
Sbjct: 115 D-RALARNRWRHYVLQGYE 132


>gi|126208969|ref|YP_001054194.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           L20]
 gi|126097761|gb|ABN74589.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 145

 Score = 80.6 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFKNDWEYNL-------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY        NL         L  + +  GKRV + C +E+   +++E LW    
Sbjct: 1   MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +            P+ ++      N      L+   +     ++ + +++  +
Sbjct: 61  DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDVLISLQTAVPDFINSFNQIIDFV 116

Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135
             ++   ++  R  ++  +  G
Sbjct: 117 PANETEKVQ-ARERYKQYRQLG 137


>gi|73542367|ref|YP_296887.1| DNA polymerase III subunit chi [Ralstonia eutropha JMP134]
 gi|72119780|gb|AAZ62043.1| DNA polymerase III chi subunit, HolC [Ralstonia eutropha JMP134]
          Length = 144

 Score = 80.6 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L++  Y  G++V V  G       L+  LWT+    FLPH 
Sbjct: 1   MTRIDFHSNVPDKLGYICRLVRKAYGAGQKVVVH-GQPAQLAELDARLWTFSPLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              G +   +   P++L  +   A     + L++  +        +E+++ ++    + 
Sbjct: 59  --CGVDHPNAEVTPIVLAATLDQA--PHHQLLINLDAKAPAQFASFERLIEVVGAGPED 113


>gi|30248459|ref|NP_840529.1| putative DNA polymerase III (chi subunit) protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138345|emb|CAD84353.1| putative DNA polymerase III (chi subunit) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 129

 Score = 80.2 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
             L     ++G +  V    ER+    ++ LWT+   GF+PH      +   +   PV++
Sbjct: 5   CRLCAKAVQQGLKTVVYVPDERLAGQFDKLLWTFTPTGFVPH---CRVDNKLADVTPVIM 61

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
               +         L++  +      + + +VV I++  + G L+  R  +R  +  G+
Sbjct: 62  NSRPVLMEAGCFGVLLNLDADVPPGFEQFPRVVEIVDEAEDGKLQ-ARKRYRHYQEQGH 119


>gi|114046708|ref|YP_737258.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-7]
 gi|113888150|gb|ABI42201.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-7]
          Length = 154

 Score = 80.2 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFK----NDWEYNLLVLLQDEYEKG----KRVSVQCGSERVRDSLNEYLWTWK 52
           M   LFY       N    ++  L     ++G    ++V + C  + +   ++E LW ++
Sbjct: 1   MTQALFYLLPPMGVNTALSDMYQLACRLAQQGFINQQQVYIHCQDKNIAFEIDELLWQFE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +    EG  +   PV +    L  N S    L++ A         + ++   
Sbjct: 61  PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
              +D       R  +R  +  G  
Sbjct: 116 FVANDDQHKAIARERYRQYRGLGIE 140


>gi|117919581|ref|YP_868773.1| DNA polymerase III chi subunit, HolC [Shewanella sp. ANA-3]
 gi|117611913|gb|ABK47367.1| DNA polymerase III chi subunit, HolC [Shewanella sp. ANA-3]
          Length = 154

 Score = 80.2 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFK----NDWEYNLLVLLQDEYEKG----KRVSVQCGSERVRDSLNEYLWTWK 52
           M   LFY       N    ++  L     ++G    ++V + C  + +   ++E LW ++
Sbjct: 1   MTQALFYLLPPMGVNTALNDMYQLACRLAQQGFINQQQVYIHCQDKNIAFEIDELLWQFE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +    EG  +   PV +    L  N S    L++ A         + ++   
Sbjct: 61  PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
              +D       R  +R  +  G  
Sbjct: 116 FVANDDQHKAIARERYRQYRGLGIE 140


>gi|226940340|ref|YP_002795414.1| HolC [Laribacter hongkongensis HLHK9]
 gi|226715267|gb|ACO74405.1| HolC [Laribacter hongkongensis HLHK9]
          Length = 140

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    D       L +    KG+R++V    E    + +  LW+    GF+PH 
Sbjct: 1   MTRVDFYHHVADPLSFACKLTRTVIGKGERLTVLFADEAALGAFDTRLWSVPAQGFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTIS-SLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
             V  +   ++  PVLL  S      T     L++ +         + +++ I+  +D G
Sbjct: 60  --VRLDDPLAAETPVLLATSLPEVPPTG---VLLNLSLGEPAGFPAWPRILEIV-GEDAG 113

Query: 120 SLEWGRAHWRSLKNSG 135
            L+  R   R+ K +G
Sbjct: 114 QLDRAREVARAYKRAG 129


>gi|157960730|ref|YP_001500764.1| DNA polymerase III chi subunit HolC [Shewanella pealeana ATCC
           700345]
 gi|157845730|gb|ABV86229.1| DNA polymerase III chi subunit HolC [Shewanella pealeana ATCC
           700345]
          Length = 163

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 8/131 (6%)

Query: 10  KNDWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66
           K+  E        L Q  +   + V V C  ++   +++E LW ++   F+PH +     
Sbjct: 25  KSALEQVYLLACQLAQRAFATQQLVYVHCQDQQQAYAIDELLWQFEPQSFVPHNLKGEGT 84

Query: 67  GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRA 126
              +   PV +    L AN      L++ A         + +++     +D       R 
Sbjct: 85  LGGA---PVEIGFDRLGANKKRHL-LINLADQVPQFAVNFGQIID-FVANDDSHKAIARD 139

Query: 127 HWRSLKNSGYA 137
            +R  +  G A
Sbjct: 140 RYRQYRALGIA 150


>gi|167856071|ref|ZP_02478814.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755]
 gi|219871803|ref|YP_002476178.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165]
 gi|167852820|gb|EDS24091.1| DNA polymerase III subunit chi [Haemophilus parasuis 29755]
 gi|219692007|gb|ACL33230.1| DNA polymerase III subunit chi [Haemophilus parasuis SH0165]
          Length = 145

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY          +  E     L    + +GKRV + C +E    SL+E LW  + 
Sbjct: 1   MKQVQFYLLSQAQAGELSAQEALACDLAAKAWRQGKRVLIACETEEQAFSLDEALWAREA 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +        +   P+ ++      N      L+   +     ++ + +++   
Sbjct: 61  DDFVPHNLSGEV---TTYATPIEISWKGKR-NAQRRDVLISLQTELPNFINSFNQIID-F 115

Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135
            + D+      R  ++  +  G
Sbjct: 116 VSVDETEKVQARERYKQYRQLG 137


>gi|15836741|ref|NP_297429.1| DNA polymerase III subunit chi [Xylella fastidiosa 9a5c]
 gi|9104922|gb|AAF82949.1|AE003867_3 DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa 9a5c]
          Length = 141

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 1   MRTLLFYR------FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKD 54
           M    FY        +   E     L++  Y+  +   +    +   ++L++ LW +  D
Sbjct: 1   MARADFYLIAKPRFLQQPLELV-CALVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPD 59

Query: 55  GFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
            ++PH +   DE D     PVL+     +  +   R LV        D    E+V+ ++ 
Sbjct: 60  AYIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVP 113

Query: 115 TDDQGSLEWGRAHWRSLKNSG 135
             D  + E  R  W+  K  G
Sbjct: 114 A-DPAAREPLRERWKHYKARG 133


>gi|322513314|ref|ZP_08066435.1| DNA-directed DNA polymerase III chi subunit [Actinobacillus ureae
           ATCC 25976]
 gi|322120913|gb|EFX92765.1| DNA-directed DNA polymerase III chi subunit [Actinobacillus ureae
           ATCC 25976]
          Length = 145

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFKNDWEYNL-------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY     +  +L         L    +  GKRV + C +E+    ++E LW    
Sbjct: 1   MKQVKFYLLSQAFSEDLSAAEAMACELSAQAWRLGKRVLISCETEQQALKIDEALWARDP 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +            P+ ++      N      L+         ++ + +++  +
Sbjct: 61  DSFVPHNLSGEV---TQYATPIEISW-PGKRNAQRRDLLISLQKNLPDFINSFNQIIDFV 116

Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135
              D+      R  ++  +  G
Sbjct: 117 PA-DEAEKAQARERYKQYRQLG 137


>gi|113969475|ref|YP_733268.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-4]
 gi|113884159|gb|ABI38211.1| DNA polymerase III chi subunit, HolC [Shewanella sp. MR-4]
          Length = 154

 Score = 79.4 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFK----NDWEYNLLVLLQDEYEKG----KRVSVQCGSERVRDSLNEYLWTWK 52
           M   LFY       N    ++  L     ++G    ++V + C  + +   ++E LW ++
Sbjct: 1   MTQALFYLLPPVGVNTALNDMYQLACRLAQQGFIHQQQVYIHCQDKNIAFEIDELLWQFE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +    EG  +   PV +    L  N S    L++ A         + ++   
Sbjct: 61  PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
              +D       R  +R  +  G  
Sbjct: 116 FVANDDQHKAIARERYRQYRGLGIE 140


>gi|71901310|ref|ZP_00683407.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1]
 gi|71728930|gb|EAO31064.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1]
          Length = 141

 Score = 79.4 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L++  Y+  +   +    +   ++L++ LW +  D 
Sbjct: 1   MARADFYLISKPRFLKKPLQLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+     +  +   R LV        D    E+V+ ++  
Sbjct: 61  YIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D  + E  R  W+  K  G
Sbjct: 115 -DPAAREPLRERWKHYKARG 133


>gi|91206236|ref|YP_538591.1| DNA polymerase III subunit chi [Rickettsia bellii RML369-C]
 gi|157827852|ref|YP_001496916.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389]
 gi|91069780|gb|ABE05502.1| DNA polymerase III chi subunit HolC [Rickettsia bellii RML369-C]
 gi|157803156|gb|ABV79879.1| DNA polymerase III subunit chi [Rickettsia bellii OSU 85-389]
          Length = 153

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 13  WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72
               + +L++  Y    +  V       ++ LN+ LWT+ +  F+PHG  V         
Sbjct: 14  LLKAIFLLIEKCYYSDLKSVVLTVDTEQQEMLNKNLWTYSRKQFIPHGSKV---DPQPEK 70

Query: 73  QPVLLTISSLNANTSTIRFLVDEASMH-----IGDVDYYEKVVFI 112
           QP+ +T +  N N +++  ++   ++         V  +++++ I
Sbjct: 71  QPIYITDTLQNPNNASVLIIISPTNIEKILQAKEYVSDFKRIIII 115


>gi|90416558|ref|ZP_01224489.1| DNA polymerase III, chi subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90331757|gb|EAS46985.1| DNA polymerase III, chi subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 143

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 1   MRTLLFYRFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M ++ FY+   D +  L     L Q      ++V          + L++ LW ++   F+
Sbjct: 1   MTSVSFYKLSGDLQVALALVCQLTQKAVNAKQQVLCLVPDNDTAEQLDKLLWGFQASAFV 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PHGV +          P+ ++  S +        L++           +E+V+ +I    
Sbjct: 61  PHGVGI-------EHLPIAISADSSDP-GEHHGILINLQGAIPTWFSRFERVMEVI--YP 110

Query: 118 QGSLEWG-RAHWRSLKNSGYA 137
           +   E   R +++  K  GY 
Sbjct: 111 EPDYEQAKRDNFKFYKERGYP 131


>gi|165976934|ref|YP_001652527.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190150834|ref|YP_001969359.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303253014|ref|ZP_07339168.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248547|ref|ZP_07530563.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307264184|ref|ZP_07545776.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|165877035|gb|ABY70083.1| DNA polymerase III chi subunit [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189915965|gb|ACE62217.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648146|gb|EFL78348.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854942|gb|EFM87129.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306870475|gb|EFN02227.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 145

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFKNDWEYNL-------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY        NL         L  + +  GKRV + C +E+   +++E LW    
Sbjct: 1   MKQVKFYLLSQTERENLSAAETMACDLAANAWRLGKRVLIACETEQQALNIDEALWARDP 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +            P+ ++      N      L+   +     ++ + +++  +
Sbjct: 61  DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQTAVPDFINSFNQIIDFV 116

Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135
             ++   ++  R  ++  +  G
Sbjct: 117 PANETEKVQ-ARERYKQYRQLG 137


>gi|24374933|ref|NP_718976.1| DNA polymerase III, chi subunit [Shewanella oneidensis MR-1]
 gi|24349645|gb|AAN56420.1|AE015778_8 DNA polymerase III, chi subunit [Shewanella oneidensis MR-1]
          Length = 154

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYNL--------LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M   LFY      E             L Q  +   ++V + C  + V   ++E LW + 
Sbjct: 1   MTQALFYLMPPTGENTALSDLYQLACRLSQRAFIDQQQVYIHCQDKNVAFEIDELLWQFD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +    EG  +   PV +    L  N S    L++ A         + ++   
Sbjct: 61  PSAFVPHNLKG--EGPTTGS-PVEIGFDRLGPNKSRQL-LINLADQVPPFAVNFGQIFD- 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
              +D       R  +R  +  G  
Sbjct: 116 FVANDDQHKVIARERYRQYRGLGIE 140


>gi|157374148|ref|YP_001472748.1| DNA polymerase III chi subunit, HolC [Shewanella sediminis HAW-EB3]
 gi|157316522|gb|ABV35620.1| DNA polymerase III chi subunit, HolC [Shewanella sediminis HAW-EB3]
          Length = 156

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 15/145 (10%)

Query: 1   MRTLLFYRFKN-------DWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50
           M   LFY             E        L Q  + + + V + C       +++E LW 
Sbjct: 1   MTQTLFYLMPTEPRSSGTALEQMYHLACELAQQAFMQQQLVYLHCQDREQAYAIDELLWQ 60

Query: 51  WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110
           ++   F+PH +        +   PV +    L  N +    L++ A         + +++
Sbjct: 61  FEPRSFVPHNLKGEGPTTGA---PVEIGFDKLGPNKNRHL-LINLADQVPSFAVNFGQII 116

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135
                +D       R  +R  ++ G
Sbjct: 117 D-FVANDTSHKAIARDRYRQYRSLG 140


>gi|121594282|ref|YP_986178.1| DNA polymerase III chi subunit, HolC [Acidovorax sp. JS42]
 gi|120606362|gb|ABM42102.1| DNA polymerase III chi subunit, HolC [Acidovorax sp. JS42]
          Length = 146

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L++    +  RV+V  G       L+  LW      F+ H 
Sbjct: 1   MTQVAFHFNAPDKLAYVCRLVRKATRQDARVTV-TGDADTLLRLDRQLWALAPSDFVGHC 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +   DE    +   VL+     + N      LV+  ++       Y +VV +++  D+  
Sbjct: 60  LGDADEEILRASPTVLVQDPRTSPNRD---VLVNLGNVLPEGFAQYARVVEVVSQVDEDD 116

Query: 121 LEWGRAHWRSLKNSGY 136
            +  R  WR     GY
Sbjct: 117 RKRARERWRGYAALGY 132


>gi|307261985|ref|ZP_07543641.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868316|gb|EFN00137.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 145

 Score = 78.6 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY          +  E     L  D +  GKRV + C +E+   +++E LW    
Sbjct: 1   MKQVKFYLLNQAGGQELSAVEAMACDLAADAWRLGKRVLIACETEQQALNIDEALWARDP 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +            P+ ++      N      L+   +     ++ + +++  +
Sbjct: 61  DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQTAVPDFINSFNQIIDFV 116

Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135
              D+      R  ++  +  G
Sbjct: 117 PV-DEAEKAQARERYKQYRQLG 137


>gi|253997953|ref|YP_003050016.1| DNA polymerase III chi subunit HolC [Methylovorus sp. SIP3-4]
 gi|253984632|gb|ACT49489.1| DNA polymerase III chi subunit HolC [Methylovorus sp. SIP3-4]
          Length = 142

 Score = 78.6 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 8/138 (5%)

Query: 1   MRTL-LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +  F+   N  +     L Q    KG+R+ V    E V   L   LW+     F+PH
Sbjct: 1   MTRIEFFFNVGNKLDKVA-ELSQRAVSKGRRMMVFGPDEAVLSELERVLWSGSALSFVPH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   +   P++L           +  L++    H      + +++ I+   D+ 
Sbjct: 60  ---CRAQHPLAPETPIVLDFKGEPLIHDDV--LINLQHQHPPFFSRFRRLIEIV-GKDEA 113

Query: 120 SLEWGRAHWRSLKNSGYA 137
                R  +R  ++ GY 
Sbjct: 114 DKAQARVRYRFYRDRGYE 131


>gi|303251672|ref|ZP_07337845.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307246420|ref|ZP_07528494.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307250778|ref|ZP_07532709.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307253153|ref|ZP_07535032.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255405|ref|ZP_07537213.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307257574|ref|ZP_07539335.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307259855|ref|ZP_07541571.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|302649514|gb|EFL79697.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306852671|gb|EFM84902.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306857190|gb|EFM89315.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859366|gb|EFM91400.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861634|gb|EFM93620.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306863922|gb|EFM95844.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306866078|gb|EFM97950.1| DNA polymerase III subunit chi [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 145

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY          +  E     L  D +  GKRV + C +E+   +++E LW    
Sbjct: 1   MKQVKFYLLNQAGGQELSAVEAMACDLAADAWRLGKRVLIACETEQQALNIDEALWARDP 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +            P+ ++      N      L+   +     ++ + +++  +
Sbjct: 61  DSFVPHNLSGEV---TQYATPIEISWKGKR-NAQRRDLLISLQTAVPDFINSFNQIIDFV 116

Query: 114 NTDDQGSLEWGRAHWRSLKNSG 135
             ++   ++  R  ++  +  G
Sbjct: 117 PANETEKVQ-ARERYKQYRQLG 137


>gi|222110919|ref|YP_002553183.1| DNA polymerase iii subunit chi holc [Acidovorax ebreus TPSY]
 gi|221730363|gb|ACM33183.1| DNA polymerase III chi subunit HolC [Acidovorax ebreus TPSY]
          Length = 146

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L++    +  RV+V  G       L+  LW      F+ H 
Sbjct: 1   MTQVAFHFNAPDKLAYVCRLVRKATRQEARVTV-TGDADTLLRLDRQLWALAPSDFVGHC 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +   DE    +   VL+     + N      LV+  ++       Y +VV +++  D+  
Sbjct: 60  LGDADEEILRASPTVLVQDPRTSPNRD---VLVNLGNVLPEGFAQYARVVEVVSQADEDD 116

Query: 121 LEWGRAHWRSLKNSGY 136
            +  R  WR     GY
Sbjct: 117 RKRARERWRGYAALGY 132


>gi|170725422|ref|YP_001759448.1| DNA polymerase III chi subunit HolC [Shewanella woodyi ATCC 51908]
 gi|169810769|gb|ACA85353.1| DNA polymerase III chi subunit HolC [Shewanella woodyi ATCC 51908]
          Length = 156

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 1   MRTLLFYRFKN-------DWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50
           M   LFY             E        L Q  + K + V   C       +++E LW 
Sbjct: 1   MTQTLFYLMPTEPRSSGTALEQMFHLACELAQQAFIKQQLVYFHCQDREQAYAIDELLWQ 60

Query: 51  WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110
           ++   F+PH +        +   PV +   +L  N +    L++ A         + +++
Sbjct: 61  FEPRSFVPHNLKGEGPTTGA---PVEIGFDNLGPNKNRHL-LINLADQVPSFAVNFGQII 116

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135
                +D G     R  +R  ++ G
Sbjct: 117 D-FVANDTGHKAIARERYRQYRSLG 140


>gi|187929749|ref|YP_001900236.1| DNA polymerase III subunit chi [Ralstonia pickettii 12J]
 gi|309781535|ref|ZP_07676271.1| DNA polymerase III, chi subunit [Ralstonia sp. 5_7_47FAA]
 gi|187726639|gb|ACD27804.1| DNA polymerase III chi subunit HolC [Ralstonia pickettii 12J]
 gi|308919948|gb|EFP65609.1| DNA polymerase III, chi subunit [Ralstonia sp. 5_7_47FAA]
          Length = 142

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G +    + +  LWT+ +  FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGDQAALQAFDTQLWTFSQLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIIN 114
              G     ++  P+LL  ++   + +     LV+ +         + +++ I+ 
Sbjct: 59  --CGLRHPLAAQTPILLADATEPLDDAPHHDILVNLSPEPPALFARFSRLIEIVG 111


>gi|313200019|ref|YP_004038677.1| DNA polymerase III chi subunit holc [Methylovorus sp. MP688]
 gi|312439335|gb|ADQ83441.1| DNA polymerase III chi subunit HolC [Methylovorus sp. MP688]
          Length = 142

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 8/138 (5%)

Query: 1   MRTL-LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  +  F+   N  +     L Q    KG+R+ V    E V   L   LW+     F+PH
Sbjct: 1   MTRIEFFFNVGNKLDKVA-ELSQRAVSKGRRMMVFGPDEAVLSELERVLWSGSALSFVPH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
                 +   +   P++L           +  L++    H      + +++ I+   D+ 
Sbjct: 60  ---CRAQHPLAPETPIVLDFKGEPLIHDDV--LINLQHQHPPFFSRFRRLIEIV-GQDEA 113

Query: 120 SLEWGRAHWRSLKNSGYA 137
                R  +R  ++ GY 
Sbjct: 114 DKAQARVRYRFYRDRGYE 131


>gi|288937435|ref|YP_003441494.1| DNA-directed DNA polymerase [Klebsiella variicola At-22]
 gi|290512176|ref|ZP_06551543.1| DNA polymerase III subunit chi [Klebsiella sp. 1_1_55]
 gi|288892144|gb|ADC60462.1| DNA-directed DNA polymerase [Klebsiella variicola At-22]
 gi|289775171|gb|EFD83172.1| DNA polymerase III subunit chi [Klebsiella sp. 1_1_55]
          Length = 147

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY           +  E  +  +  + +  GKRV + C  E+    L+E LW+  
Sbjct: 1   MKNATFYLLDNENTVEGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 61  PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEENLKQLARERYKAYRMAGFN 140


>gi|145300685|ref|YP_001143526.1| DNA polymerase III, chi subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853457|gb|ABO91778.1| DNA polymerase III, chi subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 177

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 1   MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M  + FY          +  E     L  + +  G  + + C  E     L+E LW    
Sbjct: 27  MSQVTFYLMNEQDDAQASAVERLACQLAAESWGAGH-LYLFCDDEAQALRLDELLWQLPP 85

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           + F+PH +            PV +         +    L++ A        ++ +VV  +
Sbjct: 86  ERFVPHQLQGESGQA-----PVEIGHQPPKRRYAR---LINLARETPLFAGHFAQVVDFV 137

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDV 140
            T D+   +  R  ++  + +G+A ++
Sbjct: 138 PT-DETQKQQARERYKHYRQAGHALEM 163


>gi|152973136|ref|YP_001338282.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957985|gb|ABR80015.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 147

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW+  
Sbjct: 1   MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 61  PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEENLKQLARERYKAYRMAGFN 140


>gi|85374601|ref|YP_458663.1| DNA polymerase III chi subunit [Erythrobacter litoralis HTCC2594]
 gi|84787684|gb|ABC63866.1| DNA polymerase III chi subunit [Erythrobacter litoralis HTCC2594]
          Length = 144

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 6   FYRF-KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           F++  ++  +  + ++     ++G+R+ V    +  R ++ + LW  K + FL +G    
Sbjct: 5   FWQLSRDPADKVVAMIAARVLDEGERLLVVAKDDEKRAAIAKALWEAKPEHFLANG---E 61

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWG 124
              D +  QP+LL  +   AN ++     D       D   +E+   +       +LE  
Sbjct: 62  ASADHAERQPILLGETCEAANGASHVIFADG---EWRDPHGFERAFLLF---SDETLEAA 115

Query: 125 RAHWRSL 131
           RA WR+L
Sbjct: 116 RATWRAL 122


>gi|295097700|emb|CBK86790.1| DNA polymerase III, chi subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 147

 Score = 78.3 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 61  PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRTDFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEESLKQLARERYKAYRLAGFN 140


>gi|71275901|ref|ZP_00652184.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Dixon]
 gi|71899261|ref|ZP_00681423.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1]
 gi|170729348|ref|YP_001774781.1| DNA polymerase III subunit chi [Xylella fastidiosa M12]
 gi|71163278|gb|EAO12997.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Dixon]
 gi|71730994|gb|EAO33063.1| DNA polymerase III chi subunit, HolC [Xylella fastidiosa Ann-1]
 gi|167964141|gb|ACA11151.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa M12]
          Length = 141

 Score = 78.3 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND--WEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY        E  L     L++  Y+  +   +    +   ++L++ LW +  D 
Sbjct: 1   MARADFYLISKPRFLEKPLQLVCELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+     +  +   R LV        D    E+V+ ++  
Sbjct: 61  YIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D  + E  R  W+  K  G
Sbjct: 115 -DPAAREPLRERWKHYKTRG 133


>gi|28198040|ref|NP_778354.1| DNA polymerase III subunit chi [Xylella fastidiosa Temecula1]
 gi|182680667|ref|YP_001828827.1| DNA polymerase III subunit chi [Xylella fastidiosa M23]
 gi|28056100|gb|AAO28003.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           Temecula1]
 gi|182630777|gb|ACB91553.1| DNA polymerase III chi subunit HolC [Xylella fastidiosa M23]
 gi|307579128|gb|ADN63097.1| DNA polymerase III subunit chi [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 141

 Score = 78.3 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND--WEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY        E  L     L++  Y+  +   +    +   ++L++ LW +  D 
Sbjct: 1   MARADFYLIAKPRFLEKPLQLVCELVRKAYDTHQPTLILARDQAQAEALDDLLWAFDPDA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+     +  +   R LV        D    E+V+ ++  
Sbjct: 61  YIPHQIAGSDEDD--DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D  + E  R  W+  K  G
Sbjct: 115 -DPAAREPLRERWKHYKARG 133


>gi|238892748|ref|YP_002917482.1| DNA polymerase III subunit chi [Klebsiella pneumoniae NTUH-K2044]
 gi|238545064|dbj|BAH61415.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 158

 Score = 78.3 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW+  
Sbjct: 12  MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 71

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 72  PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 127

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 128 VP-YEDNLKQLARERYKAYRMAGFN 151


>gi|261342658|ref|ZP_05970516.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC
           35316]
 gi|288315307|gb|EFC54245.1| DNA polymerase III subunit chi [Enterobacter cancerogenus ATCC
           35316]
          Length = 147

 Score = 78.3 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTQQDGLSAVEQLVCDIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +VV  
Sbjct: 61  PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRIDFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-HEESLKQLARERYKAYRLAGFN 140


>gi|262045297|ref|ZP_06018322.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330016473|ref|ZP_08308446.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3]
 gi|259037353|gb|EEW38599.1| DNA polymerase III subunit chi [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328528834|gb|EGF55777.1| DNA polymerase III subunit chi [Klebsiella sp. MS 92-3]
          Length = 147

 Score = 78.3 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW+  
Sbjct: 1   MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 61  PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDNLKQLARERYKAYRMAGFN 140


>gi|146313283|ref|YP_001178357.1| DNA polymerase III subunit chi [Enterobacter sp. 638]
 gi|145320159|gb|ABP62306.1| DNA polymerase III, chi subunit [Enterobacter sp. 638]
          Length = 147

 Score = 77.9 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 61  PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRTGFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-HEDSLKQLARERYKAYRLAGFN 140


>gi|296104926|ref|YP_003615072.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059385|gb|ADF64123.1| DNA polymerase III subunit chi [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 147

 Score = 77.9 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTHQDGLSAVEQLVCEIAAERWRAGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +VV  
Sbjct: 61  PESFVPHNLSGEGPRGGA---PVEIAWPQKR-NSSARDILISLRIDFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEESLKQLARERYKAYRLAGFN 140


>gi|171059275|ref|YP_001791624.1| DNA polymerase III chi subunit HolC [Leptothrix cholodnii SP-6]
 gi|170776720|gb|ACB34859.1| DNA polymerase III chi subunit HolC [Leptothrix cholodnii SP-6]
          Length = 145

 Score = 77.9 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 2/139 (1%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+      +     LL+     G RV+V  G       L+  LW +    F+PH 
Sbjct: 3   MGAVAFHFNVPQRQDYTCRLLRKACRAGARVAV-TGDSAALGELDRQLWIFDPIDFVPHW 61

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
             V  +   +  +   + +       +    L++ A         + +V+ ++    +  
Sbjct: 62  RGVSADRLPARLKATPIVLLDQAGTQAGHDVLLNLAEQVPDCASQFARVIEVV-GRSEAD 120

Query: 121 LEWGRAHWRSLKNSGYAPD 139
               R  WR   + G A +
Sbjct: 121 RSQARLRWRHYASLGAAIE 139


>gi|238787642|ref|ZP_04631440.1| DNA polymerase III, chi subunit HolC [Yersinia frederiksenii ATCC
           33641]
 gi|238724429|gb|EEQ16071.1| DNA polymerase III, chi subunit HolC [Yersinia frederiksenii ATCC
           33641]
          Length = 149

 Score = 77.9 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +    +  GKRV + C S+     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPVGELRAHEALACEVAAARWRAGKRVLIACESQEQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L+      N+     L+       G    + +VV  
Sbjct: 61  PEQFVPHNLAGEGPKYGA---PVELSWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|238798774|ref|ZP_04642245.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC
           43969]
 gi|238717406|gb|EEQ09251.1| DNA polymerase III, chi subunit HolC [Yersinia mollaretii ATCC
           43969]
          Length = 149

 Score = 77.9 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +  + +  GKRV + C SE     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPAGELRAHEALACEVAAERWRAGKRVLIACESEEQAQRLDEALWQRT 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        +   PV L       N+     L+       G    + +VV  
Sbjct: 61  PDQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|160876369|ref|YP_001555685.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195]
 gi|160861891|gb|ABX50425.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS195]
          Length = 174

 Score = 77.9 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 28/158 (17%)

Query: 1   MRTLLFYRF-----------KNDWEYN------------LLVLLQDEYEKGKRVSVQCGS 37
           M  +LFY              +                    L Q  + K + V + C  
Sbjct: 8   MTQVLFYLMPPVASIAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQD 67

Query: 38  ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97
           ++   +++E LW ++   F+PH +    EG  +   PV +    L AN S  + L++ A 
Sbjct: 68  KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 123

Query: 98  MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                   +  ++     +D       R  +R  +  G
Sbjct: 124 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 160


>gi|325921200|ref|ZP_08183065.1| DNA polymerase III, chi subunit [Xanthomonas gardneri ATCC 19865]
 gi|325548318|gb|EGD19307.1| DNA polymerase III, chi subunit [Xanthomonas gardneri ATCC 19865]
          Length = 141

 Score = 77.9 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L +  Y+      +        ++L++ LW +  + 
Sbjct: 1   MPRADFYLIAKPRFLNEPLRLVCELARKAYDANLSTLILARDAEQAEALDDLLWAFDDEA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+      A +   R LV         +   ++V+ ++  
Sbjct: 61  YIPHQIAGTDEED--ELAPVLIAAPEFTAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137
            D  + E  R  W+  K  G A
Sbjct: 115 -DPAAREPLRERWKQYKALGLA 135


>gi|22124657|ref|NP_668080.1| DNA polymerase III subunit chi [Yersinia pestis KIM 10]
 gi|21957466|gb|AAM84331.1|AE013676_4 DNA polymerase III, chi subunit [Yersinia pestis KIM 10]
          Length = 158

 Score = 77.9 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +  + +  GKRV + C S+     L+E LW   
Sbjct: 10  MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACESQEQAQRLDEALWQRA 69

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+     L+       G    + +VV  
Sbjct: 70  PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 125

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 126 VP-YEENLKQLARDRYKSYRSVGF 148


>gi|304410151|ref|ZP_07391770.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183]
 gi|307302138|ref|ZP_07581896.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175]
 gi|304351560|gb|EFM15959.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS183]
 gi|306914176|gb|EFN44597.1| DNA polymerase III chi subunit HolC [Shewanella baltica BA175]
          Length = 165

 Score = 77.5 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 28/157 (17%)

Query: 1   MRTLLFYRFKNDWEYNL----------------------LVLLQDEYEKGKRVSVQCGSE 38
           M  +LFY                                  L Q  + K + V + C  +
Sbjct: 1   MTQVLFY-LMPPVASTAKADSSVATVNANPALCEMHLLACQLAQQAFVKQQWVYIHCQDK 59

Query: 39  RVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM 98
           +   +++E LW ++   F+PH +    EG  +   PV +    L AN S  + L++ A  
Sbjct: 60  QQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLADQ 115

Query: 99  HIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                  +  ++     +D       R  +R  +  G
Sbjct: 116 APPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 151


>gi|206580465|ref|YP_002240780.1| DNA polymerase III, chi subunit [Klebsiella pneumoniae 342]
 gi|206569523|gb|ACI11299.1| DNA polymerase III, chi subunit [Klebsiella pneumoniae 342]
          Length = 147

 Score = 77.5 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY           +  E  +  +  + +  GKRV + C  E+    L+E LW+  
Sbjct: 1   MKNATFYLLDNENTVEGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 61  PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRLNFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRMAGFN 140


>gi|161617771|ref|YP_001591736.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161367135|gb|ABX70903.1| hypothetical protein SPAB_05634 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 174

 Score = 77.5 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 28  MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 87

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 88  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 143

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 144 VP-YEETLKQLARERYKAYRVAGFN 167


>gi|16763277|ref|NP_458894.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144756|ref|NP_808098.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56416248|ref|YP_153323.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197262429|ref|ZP_03162503.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197365171|ref|YP_002144808.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198245468|ref|YP_002218340.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|25355624|pir||AD1061 DNA polymerase III, chi chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505585|emb|CAD06937.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140395|gb|AAO71958.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56130505|gb|AAV80011.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096648|emb|CAR62263.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197240684|gb|EDY23304.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197939984|gb|ACH77317.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326626148|gb|EGE32493.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 160

 Score = 77.5 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153


>gi|16423041|gb|AAL23295.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261249564|emb|CBG27431.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|323132813|gb|ADX20243.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332991285|gb|AEF10268.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 160

 Score = 77.5 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153


>gi|126175312|ref|YP_001051461.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS155]
 gi|125998517|gb|ABN62592.1| DNA polymerase III chi subunit, HolC [Shewanella baltica OS155]
          Length = 174

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 28/158 (17%)

Query: 1   MRTLLFYR-----FKNDWEYNLLV------------------LLQDEYEKGKRVSVQCGS 37
           M  +LFY           + +  V                  L Q  + K + V + C  
Sbjct: 8   MTQVLFYLMPPVALTAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQD 67

Query: 38  ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97
           ++   +++E LW ++   F+PH +    EG  +   PV +    L AN S  + L++ A 
Sbjct: 68  KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 123

Query: 98  MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                   +  ++     +D       R  +R  +  G
Sbjct: 124 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 160


>gi|117619980|ref|YP_858155.1| DNA polymerase III, chi subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561387|gb|ABK38335.1| DNA polymerase III, chi subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 151

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 1   MRTLLFYRF-------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M  + FY          +  E     L+ D +  G  + + C  E     L+E LW    
Sbjct: 1   MSQVTFYLMSEQDDAQASAVERLACQLVADSWGAGH-LYLLCDDEAQALRLDELLWQLPP 59

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           + F+PH +            PV +         +    L++ A        ++ +VV  +
Sbjct: 60  ERFVPHQLQGESGQA-----PVEIGHQPPRRRYAR---LINLAKQTPLFAGHFAQVVDFV 111

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDV 140
            T D+   +  R  ++  + +G+A ++
Sbjct: 112 PT-DETQKQQARERYKHYRQAGHALEM 137


>gi|325499817|gb|EGC97676.1| DNA polymerase III subunit chi [Escherichia fergusonii ECD227]
          Length = 160

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +N+     L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSNSPR-DILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153


>gi|241663804|ref|YP_002982164.1| DNA polymerase III subunit chi [Ralstonia pickettii 12D]
 gi|240865831|gb|ACS63492.1| DNA polymerase III chi subunit HolC [Ralstonia pickettii 12D]
          Length = 142

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+            L++  Y  G++V V  G +   ++ +  LWT+    FLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIV-VGDQVALEAFDTQLWTFSPLDFLPH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIIN 114
              G     ++  P+LL  ++   + +     LV+ +         + +++ I+ 
Sbjct: 59  --CGLRHSLAAQTPILLADATEPLDDAPHHDILVNLSPEPPALFARFSRLIEIVG 111


>gi|331007481|ref|ZP_08330652.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989]
 gi|330418705|gb|EGG93200.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC1989]
          Length = 144

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY                L +     G+ V ++   E   DSL+EYLW++K + F
Sbjct: 1   MTEVDFYILPESTLAARDHFACRLAEKALHTGRHVVIRVSDEAHADSLSEYLWSFKPEAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH     D     + + V++       N      +++      G+   + K+  I+   
Sbjct: 61  VPHCFSSSDPSSTGTTEKVVIDWQGYTDN--YHDVIINLQQAIPGEFSRFNKLSEIVV-Q 117

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           ++  L   R  ++  ++ GY 
Sbjct: 118 EEKLLTITRESFQHYRDRGYP 138


>gi|39546402|ref|NP_463336.2| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62182902|ref|YP_219319.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167551268|ref|ZP_02345023.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991265|ref|ZP_02572364.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168244035|ref|ZP_02668967.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168464642|ref|ZP_02698545.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821099|ref|ZP_02833099.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445428|ref|YP_002043716.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449358|ref|YP_002048500.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197247365|ref|YP_002149396.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|207859602|ref|YP_002246253.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161211|ref|ZP_03346921.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213419117|ref|ZP_03352183.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427637|ref|ZP_03360387.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213586776|ref|ZP_03368602.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650370|ref|ZP_03380423.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213857513|ref|ZP_03384484.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238910632|ref|ZP_04654469.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289824524|ref|ZP_06544083.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|62130535|gb|AAX68238.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194404091|gb|ACF64313.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407662|gb|ACF67881.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195632900|gb|EDX51354.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211068|gb|ACH48465.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205323926|gb|EDZ11765.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330399|gb|EDZ17163.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337015|gb|EDZ23779.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342292|gb|EDZ29056.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206711405|emb|CAR35784.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|267996820|gb|ACY91705.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160960|emb|CBW20494.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915573|dbj|BAJ39547.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222553|gb|EFX47625.1| DNA polymerase III chi subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615640|gb|EFY12560.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618700|gb|EFY15589.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621887|gb|EFY18737.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627612|gb|EFY24403.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630918|gb|EFY27682.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637863|gb|EFY34564.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642321|gb|EFY38927.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643904|gb|EFY40452.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651020|gb|EFY47405.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656727|gb|EFY53015.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659849|gb|EFY56092.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661940|gb|EFY58156.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666312|gb|EFY62490.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672731|gb|EFY68842.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676161|gb|EFY72232.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680645|gb|EFY76683.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684461|gb|EFY80465.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322717405|gb|EFZ08976.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323194202|gb|EFZ79399.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197347|gb|EFZ82487.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201535|gb|EFZ86599.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206049|gb|EFZ91011.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213060|gb|EFZ97862.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215431|gb|EGA00175.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219415|gb|EGA03900.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227719|gb|EGA11873.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228889|gb|EGA13018.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236499|gb|EGA20575.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240000|gb|EGA24047.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241953|gb|EGA25982.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247898|gb|EGA31835.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251464|gb|EGA35335.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258170|gb|EGA41847.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263684|gb|EGA47205.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265720|gb|EGA49216.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270164|gb|EGA53612.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 147

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140


>gi|167622894|ref|YP_001673188.1| DNA polymerase III chi subunit HolC [Shewanella halifaxensis
           HAW-EB4]
 gi|167352916|gb|ABZ75529.1| DNA polymerase III chi subunit HolC [Shewanella halifaxensis
           HAW-EB4]
          Length = 167

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 10  KNDWEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66
           K   E        L +  +   + V + C  ++   +++E LW ++   F+PH +     
Sbjct: 29  KTALEQVYLLACQLAERAFTAHELVYIHCQDQQQAYAVDELLWQFEPQSFVPHNLKGEGP 88

Query: 67  GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRA 126
              +   PV +    L AN      L++ A         + +++     +D       R 
Sbjct: 89  LGGA---PVEIGFDRLGANKKRHL-LINLADQVPQFAVNFGQIID-FVANDDSHKAIARD 143

Query: 127 HWRSLKNSGYA 137
            +R  +  G A
Sbjct: 144 RYRQYRALGIA 154


>gi|330827960|ref|YP_004390912.1| DNA polymerase III subunit chi [Aeromonas veronii B565]
 gi|328803096|gb|AEB48295.1| DNA polymerase III, chi subunit [Aeromonas veronii B565]
          Length = 151

 Score = 77.5 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 1   MRTLLFYRF-------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M  + FY          +  E     L  + +  G  + + C  E     L+E LW    
Sbjct: 1   MSQVTFYLMSEQDDAQASAVERLACTLAAESWGAGH-IYLFCNDEAQALRLDELLWQLPP 59

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           + F+PH +            PV +         +    L++ A        ++ +VV  +
Sbjct: 60  ERFVPHQLQGESGQA-----PVEIGHQPPRRRYAR---LINLAKQTPLFAGHFAQVVDFV 111

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDV 140
            T D+   +  R  ++  + +G+A ++
Sbjct: 112 PT-DETQKQQARERYKHYRQAGHALEM 137


>gi|45440494|ref|NP_992033.1| DNA polymerase III subunit chi [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51594882|ref|YP_069073.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis IP
           32953]
 gi|108808934|ref|YP_652850.1| DNA polymerase III subunit chi [Yersinia pestis Antiqua]
 gi|108810811|ref|YP_646578.1| DNA polymerase III subunit chi [Yersinia pestis Nepal516]
 gi|123440872|ref|YP_001004863.1| DNA polymerase III subunit chi [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145600506|ref|YP_001164582.1| DNA polymerase III subunit chi [Yersinia pestis Pestoides F]
 gi|153948188|ref|YP_001402498.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis IP
           31758]
 gi|153997516|ref|ZP_02022616.1| DNA polymerase III, chi subunit [Yersinia pestis CA88-4125]
 gi|162419828|ref|YP_001608337.1| DNA polymerase III subunit chi [Yersinia pestis Angola]
 gi|165925832|ref|ZP_02221664.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936725|ref|ZP_02225292.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010088|ref|ZP_02230986.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214283|ref|ZP_02240318.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399382|ref|ZP_02304906.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420797|ref|ZP_02312550.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423580|ref|ZP_02315333.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167470533|ref|ZP_02335237.1| DNA polymerase III subunit chi [Yersinia pestis FV-1]
 gi|170025895|ref|YP_001722400.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis YPIII]
 gi|186893892|ref|YP_001871004.1| DNA polymerase III subunit chi [Yersinia pseudotuberculosis PB1/+]
 gi|218930458|ref|YP_002348333.1| DNA polymerase III subunit chi [Yersinia pestis CO92]
 gi|229839086|ref|ZP_04459245.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896574|ref|ZP_04511741.1| DNA polymerase III, chi subunit [Yersinia pestis Pestoides A]
 gi|229899649|ref|ZP_04514790.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901014|ref|ZP_04516138.1| DNA polymerase III, chi subunit [Yersinia pestis Nepal516]
 gi|270489194|ref|ZP_06206268.1| DNA polymerase III subunit chi [Yersinia pestis KIM D27]
 gi|294505146|ref|YP_003569208.1| DNA polymerase III subunit chi [Yersinia pestis Z176003]
 gi|332160135|ref|YP_004296712.1| DNA polymerase III subunit chi [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|45435351|gb|AAS60910.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51588164|emb|CAH19770.1| DNA polymerase III, chi subunit [Yersinia pseudotuberculosis IP
           32953]
 gi|108774459|gb|ABG16978.1| DNA polymerase III, chi subunit [Yersinia pestis Nepal516]
 gi|108780847|gb|ABG14905.1| DNA polymerase III, chi subunit [Yersinia pestis Antiqua]
 gi|115349069|emb|CAL22031.1| DNA polymerase III, chi subunit [Yersinia pestis CO92]
 gi|122087833|emb|CAL10619.1| DNA polymerase III, chi subunit [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145212202|gb|ABP41609.1| DNA polymerase III, chi subunit [Yersinia pestis Pestoides F]
 gi|149289153|gb|EDM39233.1| DNA polymerase III, chi subunit [Yersinia pestis CA88-4125]
 gi|152959683|gb|ABS47144.1| DNA polymerase III, chi subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352643|gb|ABX86591.1| DNA polymerase III, chi subunit [Yersinia pestis Angola]
 gi|165915374|gb|EDR33984.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922444|gb|EDR39621.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990995|gb|EDR43296.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204515|gb|EDR48995.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961603|gb|EDR57624.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051886|gb|EDR63294.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057750|gb|EDR67496.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752429|gb|ACA69947.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|186696918|gb|ACC87547.1| DNA polymerase III chi subunit HolC [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682353|gb|EEO78445.1| DNA polymerase III, chi subunit [Yersinia pestis Nepal516]
 gi|229687141|gb|EEO79216.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695452|gb|EEO85499.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700352|gb|EEO88384.1| DNA polymerase III, chi subunit [Yersinia pestis Pestoides A]
 gi|262363208|gb|ACY59929.1| DNA polymerase III subunit chi [Yersinia pestis D106004]
 gi|262367139|gb|ACY63696.1| DNA polymerase III subunit chi [Yersinia pestis D182038]
 gi|270337698|gb|EFA48475.1| DNA polymerase III subunit chi [Yersinia pestis KIM D27]
 gi|294355605|gb|ADE65946.1| DNA polymerase III subunit chi [Yersinia pestis Z176003]
 gi|318607299|emb|CBY28797.1| DNA polymerase III chi subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|320016645|gb|ADW00217.1| DNA polymerase III, chi subunit [Yersinia pestis biovar Medievalis
           str. Harbin 35]
 gi|325664365|gb|ADZ41009.1| DNA polymerase III subunit chi [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859701|emb|CBX70037.1| DNA polymerase III subunit chi [Yersinia enterocolitica W22703]
          Length = 149

 Score = 77.5 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +  + +  GKRV + C S+     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACESQEQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+     L+       G    + +VV  
Sbjct: 61  PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|194735547|ref|YP_002117397.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197300603|ref|ZP_02659664.2| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|200387328|ref|ZP_03213940.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927029|ref|ZP_03218231.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224586300|ref|YP_002640099.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|194711049|gb|ACF90270.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291664|gb|EDY31014.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604426|gb|EDZ02971.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323694|gb|EDZ08889.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224470828|gb|ACN48658.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320088908|emb|CBY98666.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 160

 Score = 77.1 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153


>gi|153001633|ref|YP_001367314.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185]
 gi|151366251|gb|ABS09251.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS185]
          Length = 174

 Score = 77.1 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 28/158 (17%)

Query: 1   MRTLLFYRF-----------KNDWEYN------------LLVLLQDEYEKGKRVSVQCGS 37
           M  +LFY              +                    L Q  + K + V + C  
Sbjct: 8   MTQVLFYLMPPVASIAKAKADSPVATANATPALCEMHLLACQLAQQAFVKQQWVYIHCQD 67

Query: 38  ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97
           ++   +++E LW ++   F+PH +    EG  +   PV +    L AN S  + L++ A 
Sbjct: 68  KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 123

Query: 98  MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                   +  ++     +D       R  +R  +  G
Sbjct: 124 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 160


>gi|304413754|ref|ZP_07395198.1| DNA polymerase III chi subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304283845|gb|EFL92239.1| DNA polymerase III chi subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 204

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E     L    +  GKRV + C S +  + L+E LW    + F+PH +        +   
Sbjct: 78  EALACELAAKYWRLGKRVLIACESLQQAERLDEALWQRSPEQFVPHNLAGEGPKQGA--- 134

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           P+ L       ++     L++        V  +++V+  +   ++   +  R  ++S + 
Sbjct: 135 PIELAWPERRGSSPRHL-LINLLPQLADFVTVFQEVIDFVP-YEEHLKQLARERYKSYRR 192

Query: 134 SGY 136
            G+
Sbjct: 193 VGF 195


>gi|260596294|ref|YP_003208865.1| DNA polymerase III subunit chi [Cronobacter turicensis z3032]
 gi|260215471|emb|CBA27587.1| DNA polymerase III subunit chi [Cronobacter turicensis z3032]
          Length = 153

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +    +  GKR+ + C  E     ++E LW   
Sbjct: 1   MKNATFYLLDNDDTVDGLNAVEQLVCDVAAARWRAGKRILIACVDEAQATRIDEALWKRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        +   PV +       ++     L+            + +VV  
Sbjct: 61  PDSFVPHNLAGEGPRGGA---PVEIAWPQKRGSSPREL-LISLLPEFAAFATAFYEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   D+   +  R  +++ + +G+
Sbjct: 117 VP-YDESQKQLARERYKAYRAAGF 139


>gi|238785040|ref|ZP_04629037.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC
           43970]
 gi|238714081|gb|EEQ06096.1| DNA polymerase III, chi subunit HolC [Yersinia bercovieri ATCC
           43970]
          Length = 149

 Score = 77.1 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +    +  GKRV + C SE     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPAGELRAHEALACEIAAARWRTGKRVLIACESEEQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        +   PV L       N+     L+       G    + +VV  
Sbjct: 61  PDQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|284814459|gb|ADB97589.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. pauca]
 gi|313104560|gb|ADR31657.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. pauca]
          Length = 126

 Score = 76.7 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 9   FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
            +   E     L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D
Sbjct: 8   LQQPLELV-CALVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
                PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W
Sbjct: 67  --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119

Query: 129 RSLKNSG 135
           +  K  G
Sbjct: 120 KHYKARG 126


>gi|217972438|ref|YP_002357189.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223]
 gi|217497573|gb|ACK45766.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS223]
          Length = 167

 Score = 76.7 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 30/159 (18%)

Query: 1   MRTLLFYRFKNDWEYNL------------------------LVLLQDEYEKGKRVSVQCG 36
           M  +LFY                                    L Q  + K + V + C 
Sbjct: 1   MTQVLFY-LMPPVASTAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQ 59

Query: 37  SERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEA 96
            ++   +++E LW ++   F+PH +    EG  +   PV +    L AN S  + L++ A
Sbjct: 60  DKQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLA 115

Query: 97  SMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                    +  ++     +D       R  +R  +  G
Sbjct: 116 DQAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 153


>gi|315268559|gb|ADT95412.1| DNA polymerase III chi subunit HolC [Shewanella baltica OS678]
          Length = 167

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 28/158 (17%)

Query: 1   MRTLLFYRF-----------KNDWEYN------------LLVLLQDEYEKGKRVSVQCGS 37
           M  +LFY              +                    L Q  + K + V + C  
Sbjct: 1   MTQVLFYLMPPVASIAKAKADSPVATANANPALCEMYLLACQLAQQAFVKQQWVYIHCQD 60

Query: 38  ERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEAS 97
           ++   +++E LW ++   F+PH +    EG  +   PV +    L AN S  + L++ A 
Sbjct: 61  KQQAHAIDELLWQFEPSAFVPHNLKG--EGPMTGS-PVEIGFDRLGANKSR-QVLINLAD 116

Query: 98  MHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
                   +  ++     +D       R  +R  +  G
Sbjct: 117 QAPPFAVNFGHIID-FVANDDQHKAVARERYRQYRGLG 153


>gi|299985537|gb|ADB97593.2| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. pauca]
          Length = 126

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 9   FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
            +      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D
Sbjct: 8   LQQPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
                PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W
Sbjct: 67  --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119

Query: 129 RSLKNSG 135
           +  K  G
Sbjct: 120 KHYKARG 126


>gi|120611820|ref|YP_971498.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1]
 gi|120590284|gb|ABM33724.1| DNA polymerase III chi subunit, HolC [Acidovorax citrulli AAC00-1]
          Length = 144

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F  F    +         +  +   + V  G   V D+++  LW      F+ H 
Sbjct: 1   MTEIAF-HFNAPDKLAYACRFARKAVRSDALLVITGPSAVLDAVDRALWALGPQDFVAH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
               DE D     PVLL      A  + +  L++         + + ++V ++++ D+  
Sbjct: 59  CRQEDEADLREASPVLLATDPRAATHAQV--LLNLGPTVPAGFERFGRLVEVVSSTDESD 116

Query: 121 LEWGRAHWRSLKNSGYA 137
               R  WR     GYA
Sbjct: 117 RAGARERWRHYAQRGYA 133


>gi|253991459|ref|YP_003042815.1| DNA polymerase III subunit chi [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782909|emb|CAQ86074.1| dna polymerase iii, chi subunit [Photorhabdus asymbiotica]
          Length = 158

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M++  FY  +                    D++  GKRV + C  ++  + L+E LW  +
Sbjct: 10  MKSATFYLLEQPSPQADLQAHEWLACQFAADQWRAGKRVLIACEDQQQAEKLDEALWQRE 69

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N+     L++           + +V+  
Sbjct: 70  PHQFVPHNLAGEGPRYGA---PVELCWPQKRGNSPR-DILINLLPQFADFATAFHEVIDF 125

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  +++ ++ G+ 
Sbjct: 126 VPI-DENLKQLARERYKTYRSVGFN 149


>gi|241760416|ref|ZP_04758511.1| DNA polymerase III chi subunit [Neisseria flavescens SK114]
 gi|241319294|gb|EER55772.1| DNA polymerase III chi subunit [Neisseria flavescens SK114]
          Length = 146

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G ++ V   S      L+  LW    + F+PH 
Sbjct: 1   MPKATFYTHVAQPAAFACRLITRAIRDGGQILVWSDSAAAVQQLDVDLWQQIPESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           V +       S  PVLL   +   N       L   A           +++ I+  +   
Sbjct: 61  VWL-PTDPMPSETPVLLAFGNALPNIPQDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
            L   R  +R+ + SG+  +
Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138


>gi|157826359|ref|YP_001494079.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford]
 gi|157800317|gb|ABV75571.1| DNA polymerase III subunit chi [Rickettsia akari str. Hartford]
          Length = 154

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y    +  +       ++ LN++LWT+ +  F+PHG  +         QP+ +T   
Sbjct: 23  EKCYHYDLKSVILTTDADQQEMLNKHLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79

Query: 82  LNANTSTIRFLVDEASMH-----IGDVDYYEKVVFIIN 114
            N N +++  ++   ++         V+ +++++ I +
Sbjct: 80  QNPNNASVLIIISPTAIEKILQIKDYVEVFKRIIIITD 117


>gi|284814465|gb|ADB97592.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. fastidiosa]
 gi|284814469|gb|ADB97594.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. fastidiosa]
 gi|313104566|gb|ADR31660.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. fastidiosa]
          Length = 126

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 9   FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
            +      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D
Sbjct: 8   LEKPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
                PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W
Sbjct: 67  --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119

Query: 129 RSLKNSG 135
           +  K  G
Sbjct: 120 KHYKARG 126


>gi|205360565|ref|ZP_02684454.2| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348910|gb|EDZ35541.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 160

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVD- 128

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
               ++   +  R  +++ + +G+ 
Sbjct: 129 FAPYEETLKQLARERYKAYRVAGFN 153


>gi|284814453|gb|ADB97586.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. sandyi]
          Length = 126

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 9   FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
            K      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D
Sbjct: 8   LKKPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
                PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W
Sbjct: 67  --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119

Query: 129 RSLKNSG 135
           +  K  G
Sbjct: 120 KHYKARG 126


>gi|242240957|ref|YP_002989138.1| DNA polymerase III subunit chi [Dickeya dadantii Ech703]
 gi|242133014|gb|ACS87316.1| DNA-directed DNA polymerase [Dickeya dadantii Ech703]
          Length = 156

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+  +FY   +D         E     L    +  GKRV + C  E+    L+E LW  +
Sbjct: 8   MKNAIFYLLDHDTPSGELNACEALSCDLAAAAWRAGKRVLIACEDEQQALRLDEALWQRE 67

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 68  PHTFVPHNLAGEGPRQGA---PVELAWPHKRGNGPRDL-LISLMPQFADFATAFHEVIDF 123

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  +++ ++ G+
Sbjct: 124 VP-YEESLKQLARERYKAYRSVGF 146


>gi|238750165|ref|ZP_04611668.1| DNA polymerase III, chi subunit HolC [Yersinia rohdei ATCC 43380]
 gi|238711709|gb|EEQ03924.1| DNA polymerase III, chi subunit HolC [Yersinia rohdei ATCC 43380]
          Length = 149

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +  + +  GKRV + C S+     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPAGELRAHEALACEVAAERWRAGKRVLIACESQEQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+     L+            + +VV  
Sbjct: 61  PERFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAAFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|194472838|ref|ZP_03078822.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205358606|ref|ZP_02657873.2| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194459202|gb|EDX48041.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332907|gb|EDZ19671.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 160

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C +E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACENEKQAFRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 130 VP-YEETLKQLARERYKAYRVAGFN 153


>gi|119773928|ref|YP_926668.1| DNA polymerase III, chi subunit [Shewanella amazonensis SB2B]
 gi|119766428|gb|ABL98998.1| DNA polymerase III, chi subunit [Shewanella amazonensis SB2B]
          Length = 151

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 1   MRTLLFYRF-----KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M   LFY       ++  E     L    Y +G  V + C  E    +++E LW +  + 
Sbjct: 1   MTQALFYVLPPSQMRDAAELLACRLAAFHYRRGAWVYIHCNDESQSFAIDEQLWQFDPND 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           F+PH +        +   PV +    L   +     L++ A        ++   +  +  
Sbjct: 61  FVPHNLKGEGPLGGA---PVEIGHDRLGP-SKNRGILINLAEKVPPFAVHFGHFIDFVAG 116

Query: 116 DDQGSLEWGRAHWRSLKNSGYAP 138
            D+ +    R  +R L+  G  P
Sbjct: 117 -DEATKALARLRFRELRGLGIEP 138


>gi|238761814|ref|ZP_04622788.1| DNA polymerase III, chi subunit HolC [Yersinia kristensenii ATCC
           33638]
 gi|238699928|gb|EEP92671.1| DNA polymerase III, chi subunit HolC [Yersinia kristensenii ATCC
           33638]
          Length = 149

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +  + +  GKRV + C ++     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACENQEQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+     L+       G    + +VV  
Sbjct: 61  PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|238793059|ref|ZP_04636688.1| DNA polymerase III, chi subunit HolC [Yersinia intermedia ATCC
           29909]
 gi|238727659|gb|EEQ19184.1| DNA polymerase III, chi subunit HolC [Yersinia intermedia ATCC
           29909]
          Length = 149

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +  + +  GKRV + C ++     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPAGELRAHEALACEIAAERWRAGKRVLIACENQEQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+     L+       G    + +VV  
Sbjct: 61  PEQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|316983815|gb|EFV62795.1| DNA polymerase III chi subunit, HolC family protein [Neisseria
           meningitidis H44/76]
 gi|325134629|gb|EGC57269.1| DNA polymerase III, chi subunit [Neisseria meningitidis M13399]
 gi|325140782|gb|EGC63296.1| DNA polymerase III, chi subunit [Neisseria meningitidis CU385]
 gi|325205697|gb|ADZ01150.1| DNA polymerase III, chi subunit [Neisseria meningitidis M04-240196]
          Length = 166

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 21  MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 81  IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 134 -GNSLEELADARERFTAYRRSGFAIE 158


>gi|194097864|ref|YP_002000909.1| HolC [Neisseria gonorrhoeae NCCP11945]
 gi|254494455|ref|ZP_05107626.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae 1291]
 gi|291045043|ref|ZP_06570751.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae DGI2]
 gi|193933154|gb|ACF28978.1| HolC [Neisseria gonorrhoeae NCCP11945]
 gi|226513495|gb|EEH62840.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae 1291]
 gi|291011046|gb|EFE03043.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae DGI2]
 gi|317163634|gb|ADV07175.1| HolC [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 166

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +        L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 21  MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 80

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     AS+         +V+ I+
Sbjct: 81  IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 133

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158


>gi|291616049|ref|YP_003518791.1| HolC [Pantoea ananatis LMG 20103]
 gi|291151079|gb|ADD75663.1| HolC [Pantoea ananatis LMG 20103]
 gi|327396300|dbj|BAK13722.1| DNA polymerase III chi subunit HolC [Pantoea ananatis AJ13355]
          Length = 152

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  + D         E  +  L +  +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYVLETDASSDGLSAVEALVCDLAETRWRAGKRVLIACEDEQQAIRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+     L+            + +V+  
Sbjct: 61  ANAFVPHNLAGEGPRYGA---PVELAWPQRRGNSPRDL-LISLLPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEDALKQLARDRYKAYRSVGF 139


>gi|326316901|ref|YP_004234573.1| DNA polymerase III chi subunit HolC [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373737|gb|ADX46006.1| DNA polymerase III chi subunit HolC [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 144

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D         +    +   + V  G   V D+++  LW      FL H 
Sbjct: 1   MTEIAFHFNAPDKLAYACRFARKAL-RNDALLVITGPAPVLDAMDRALWALSPQDFLAH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
               DE +     PVLL           +  L++  +      + + ++V +++  D+G 
Sbjct: 59  CRQEDEPELREASPVLLAADPRTVARPDV--LLNLGASVPEGFERFARLVEVVSAHDEGD 116

Query: 121 LEWGRAHWRSLKNSGY 136
               R  WR     GY
Sbjct: 117 RAGARERWRHYAQRGY 132


>gi|256823040|ref|YP_003147003.1| DNA polymerase III chi subunit HolC [Kangiella koreensis DSM 16069]
 gi|256796579|gb|ACV27235.1| DNA polymerase III chi subunit HolC [Kangiella koreensis DSM 16069]
          Length = 142

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 11/142 (7%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQDE----YEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M  + F+  ++   E   L L+       Y++G++V +    E+   +++EYLW    + 
Sbjct: 1   MTQVEFHILESQPGEEAYLRLVGQCVKSLYKQGRKVYIHAHDEKQAHAVDEYLWALDLNE 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           F+PH +            PV +  +           L++ +        Y+ K   I+  
Sbjct: 61  FIPHNMVGEGPAKAP---PVQIGFNQPPEEQHDC--LINLSRDVQPFFSYFLKCYEIVP- 114

Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137
           ++    E  R  ++  +  GY 
Sbjct: 115 NEDEHKESARERYKYYRGHGYP 136


>gi|186476975|ref|YP_001858445.1| DNA polymerase III subunit chi [Burkholderia phymatum STM815]
 gi|184193434|gb|ACC71399.1| DNA polymerase III chi subunit HolC [Burkholderia phymatum STM815]
          Length = 138

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D       L++  Y+ G+ + V         + +E LWT+    F+PH 
Sbjct: 1   MTRIDFHSNVGDSLLYACRLVRKAYQAGQPLVVLA-EPPRLRAFDEQLWTFSALDFIPHC 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +        ++  P++L  S   A     + L++  +        +E+++ I+  +    
Sbjct: 60  LATS---PLAAQTPIVLASSLDEA--PHHQILLNLGATVPPQFARFERLLEIV-GNAPDE 113

Query: 121 LEWG 124
           L  G
Sbjct: 114 LAAG 117


>gi|89094616|ref|ZP_01167553.1| DNA polymerase III chi subunit, HolC [Oceanospirillum sp. MED92]
 gi|89081086|gb|EAR60321.1| DNA polymerase III chi subunit, HolC [Oceanospirillum sp. MED92]
          Length = 146

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 1   MRT-LLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M +   FY   +         L  L++     G ++ +Q   E+    +++ LW ++ + 
Sbjct: 1   MTSKADFYVLPSSDPDARGRFLCRLVEKIGALGHQIYIQTPDEQEAKRIDQLLWEYRPEA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           F+PH +   D+       PV +  +        +   ++       D   +E+++ ++  
Sbjct: 61  FIPHHLLGDDKISS----PVQIGWNEQRPEHKDVYVNLNL--DIPQDALEFERILEVVVQ 114

Query: 116 DDQGSLEWGRAHWRSLKNSGYAPDV 140
             +  L   R ++++ +++G   D+
Sbjct: 115 T-EDVLTSTRKNYKTYQSNGIQIDM 138


>gi|37528303|ref|NP_931648.1| DNA polymerase III subunit chi [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787741|emb|CAE16854.1| DNA polymerase III, chi subunit [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 149

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M++  FY  +                    D++  GKRV + C +++  + L+E LW  +
Sbjct: 1   MKSATFYLLEQPSPQADLQAHEWLACQFAADQWRAGKRVLIACENQQQAEKLDEALWQRE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L++           + +V+  
Sbjct: 61  PHQFVPHNLAGEGPRYGA---PVELCWPQKRGNAPR-DILINLLPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  ++S ++ G+ 
Sbjct: 117 VPI-DENLKQLARERYKSYRSVGFN 140


>gi|294669483|ref|ZP_06734550.1| hypothetical protein NEIELOOT_01381 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308396|gb|EFE49639.1| hypothetical protein NEIELOOT_01381 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 147

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 1/139 (0%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY    D       L +    + +R+ + CGSE     L++ LW    + FLPH 
Sbjct: 1   MPRATFYVHITDPAAFACKLTRRACGQNERLLIWCGSEAEMHRLDKELWQDPPESFLPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +       +      +L   +   +      +++             + V  I  +    
Sbjct: 61  IWFEGH-PYPQDAAAVLACGNRLPSLPEGTVVLNLTDDFWHTAQPLPQRVLEIVGNSPDE 119

Query: 121 LEWGRAHWRSLKNSGYAPD 139
           L   R  +R+ +++G+  +
Sbjct: 120 LAGARERFRAYRDAGFTVE 138


>gi|152978730|ref|YP_001344359.1| DNA polymerase III subunit chi [Actinobacillus succinogenes 130Z]
 gi|150840453|gb|ABR74424.1| DNA-directed DNA polymerase [Actinobacillus succinogenes 130Z]
          Length = 147

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 5/127 (3%)

Query: 11  NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70
           +  E     L    +  GKRV + C +E     L+E LW    D F+PH +        +
Sbjct: 20  SAVEAQACDLAAQAWRLGKRVLIACETEEQAFRLDEALWQRDADEFVPHNLS---GEITN 76

Query: 71  SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130
              P+ ++      N      L+            + +V+  +   ++      R  ++ 
Sbjct: 77  FATPIEISWRGKR-NAQRRDVLISLQYNVPDFAQSFNRVIDFVPA-EEEQKAQARERYKI 134

Query: 131 LKNSGYA 137
            +  G+ 
Sbjct: 135 YRQLGFT 141


>gi|157147737|ref|YP_001455056.1| DNA polymerase III subunit chi [Citrobacter koseri ATCC BAA-895]
 gi|157084942|gb|ABV14620.1| hypothetical protein CKO_03541 [Citrobacter koseri ATCC BAA-895]
          Length = 147

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYILDNDTTIDGLSAVEQLVCDIAAERWRSGKRVLIACEDEKQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +V+  
Sbjct: 61  PESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTGFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140


>gi|300725028|ref|YP_003714354.1| DNA polymerase III subunit chi [Xenorhabdus nematophila ATCC 19061]
 gi|297631571|emb|CBJ92280.1| DNA polymerase III, chi subunit [Xenorhabdus nematophila ATCC
           19061]
          Length = 159

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 1   MRTLLFYRFKN-DWEYNLLV-----------------LLQDEYEKGKRVSVQCGSERVRD 42
           M+   FY  +    E  L                   L  D++  GKRV + C S++  +
Sbjct: 1   MKNATFYLLEKLPSEKRLPEQSSFSDDLQPHEWMACQLAADQWRAGKRVLIACESQQQAE 60

Query: 43  SLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGD 102
            L+E LW  +   F+PH +        +   PV L      +N      LV         
Sbjct: 61  KLDEALWQREPSQFVPHNLAGEGPRYGA---PVELCWPQKRSNAPR-DVLVTLLPHFADF 116

Query: 103 VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
              + +V+  +   D+   +  R  ++S ++ G+ 
Sbjct: 117 ATAFHEVIDFVPI-DENLKQLARERYKSYRSVGFN 150


>gi|50119361|ref|YP_048528.1| DNA polymerase III subunit chi [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609887|emb|CAG73322.1| DNA polymerase III, chi subunit [Pectobacterium atrosepticum
           SCRI1043]
          Length = 149

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     L  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIVCEDEQQAIRLDEALWQRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEDSLKQLARDRYKTYRSVGF 139


>gi|253686790|ref|YP_003015980.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753368|gb|ACT11444.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 149

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     L  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  PTAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  +++ ++ G+
Sbjct: 117 VP-YEESLKQLARDRYKTYRSVGF 139


>gi|325132747|gb|EGC55430.1| DNA polymerase III, chi subunit [Neisseria meningitidis M6190]
 gi|325138632|gb|EGC61191.1| DNA polymerase III, chi subunit [Neisseria meningitidis ES14902]
          Length = 166

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 21  MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 80

Query: 61  VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 81  IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158


>gi|238760358|ref|ZP_04621499.1| DNA polymerase III, chi subunit HolC [Yersinia aldovae ATCC 35236]
 gi|238701418|gb|EEP93994.1| DNA polymerase III, chi subunit HolC [Yersinia aldovae ATCC 35236]
          Length = 149

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     +    +  GKRV + C S+     L+E LW   
Sbjct: 1   MKNATFYLLEHDTPAGELRAHEALACEVAAVHWRAGKRVLIACESQEQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        +   PV L       N+     L+       G    + +VV  
Sbjct: 61  PDQFVPHNLAGEGPKYGA---PVELAWPERRGNSPRDL-LISLLPEFAGFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEENLKQLARDRYKSYRSVGF 139


>gi|262370183|ref|ZP_06063510.1| DNA polymerase III [Acinetobacter johnsonii SH046]
 gi|262315222|gb|EEY96262.1| DNA polymerase III [Acinetobacter johnsonii SH046]
          Length = 135

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    + +R+ +      ++  L+E LW++    F+
Sbjct: 1   MANISFYLFEQSPERQVESACRLCRKILRQPERIWLYASDPELQQQLDERLWSFDDTSFI 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PHG+D  D     S Q          ++     F        +   + +  ++ II  ++
Sbjct: 61  PHGIDQIDARICISAQ------LPEQSDWIVFNF----NDQALEQFEKFSHIIEIIE-NN 109

Query: 118 QGSLEWGRAHWRSLKNSGYAP 138
           + + + GR  ++  +  G   
Sbjct: 110 ESAKQQGREKFKQYRRLGVEA 130


>gi|239998344|ref|ZP_04718268.1| HolC [Neisseria gonorrhoeae 35/02]
 gi|240014485|ref|ZP_04721398.1| HolC [Neisseria gonorrhoeae DGI18]
 gi|240016931|ref|ZP_04723471.1| HolC [Neisseria gonorrhoeae FA6140]
 gi|240079729|ref|ZP_04724272.1| HolC [Neisseria gonorrhoeae FA19]
 gi|240116442|ref|ZP_04730504.1| HolC [Neisseria gonorrhoeae PID18]
 gi|240117146|ref|ZP_04731208.1| HolC [Neisseria gonorrhoeae PID1]
 gi|240121007|ref|ZP_04733969.1| HolC [Neisseria gonorrhoeae PID24-1]
 gi|240125096|ref|ZP_04737982.1| HolC [Neisseria gonorrhoeae SK-92-679]
 gi|260441664|ref|ZP_05795480.1| HolC [Neisseria gonorrhoeae DGI2]
 gi|268594206|ref|ZP_06128373.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae 35/02]
 gi|268595875|ref|ZP_06130042.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae FA19]
 gi|268602114|ref|ZP_06136281.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID18]
 gi|268602834|ref|ZP_06137001.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID1]
 gi|268683691|ref|ZP_06150553.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268547595|gb|EEZ43013.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae 35/02]
 gi|268549663|gb|EEZ44682.1| DNA polymerase III subunit chi [Neisseria gonorrhoeae FA19]
 gi|268586245|gb|EEZ50921.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID18]
 gi|268586965|gb|EEZ51641.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID1]
 gi|268623975|gb|EEZ56375.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 146

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +        L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     AS+         +V+ I+
Sbjct: 61  IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138


>gi|15677419|ref|NP_274575.1| DNA polymerase III chi subunit [Neisseria meningitidis MC58]
 gi|7226816|gb|AAF41922.1| putative DNA polymerase holoenzyme chi subunit [Neisseria
           meningitidis MC58]
 gi|325199833|gb|ADY95288.1| DNA polymerase III, chi subunit [Neisseria meningitidis H44/76]
          Length = 146

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 61  IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEELADARERFTAYRRSGFAIE 138


>gi|241765205|ref|ZP_04763189.1| DNA polymerase III chi subunit HolC [Acidovorax delafieldii 2AN]
 gi|241365134|gb|EER60006.1| DNA polymerase III chi subunit HolC [Acidovorax delafieldii 2AN]
          Length = 144

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D         +     G RV +   ++     ++  LW  +   F+ H 
Sbjct: 1   MTEVAFHFNAPDKLAYACRFARKAQRSGVRVVIVASADA-LAQIDGMLWRMQPQDFVAH- 58

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                + +     PV+L   +  A       L++           +E++V +++  D+  
Sbjct: 59  CRADADEELLQHSPVVLAADAREA--PHQELLLNLGDAVPEGFSSFERLVEVVSATDESD 116

Query: 121 LEWGRAHWRSLKNSGY 136
               R+ WR   + GY
Sbjct: 117 RSEARSRWRHYASRGY 132


>gi|315125731|ref|YP_004067734.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913]
 gi|315014245|gb|ADT67583.1| DNA polymerase III subunit chi [Pseudoalteromonas sp. SM9913]
          Length = 148

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           Y  G+RV +   SE   +S++E +WT+  D F+PH +        +   PV +  +    
Sbjct: 35  YRLGQRVFIFVDSEETANSIDETIWTFDADSFVPHNLQGEGPKGGA---PVEIGTTPPVG 91

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           N    + L++ A+     +  + +V   +   +  + +  R  ++ L+  G
Sbjct: 92  NR---KVLINLANHLPDFIRRFNQVFDFVPV-EPVAKQAARERFKKLRQLG 138


>gi|239993536|ref|ZP_04714060.1| DNA polymerase III chi subunit [Alteromonas macleodii ATCC 27126]
 gi|332142601|ref|YP_004428339.1| DNA polymerase III chi subunit [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552623|gb|AEA99341.1| DNA polymerase III chi subunit [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 140

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 1   MRTLLFYRFKND---WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  ++FY+  +           ++   +   +++SV C ++   + ++E LW    D F+
Sbjct: 1   MPQVIFYQLTSSDNGVAGRASEVIASAFANKQKISVLCDTQAQAEEVDELLWQLPADRFV 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PH +         S  PV +         +  + +V+  S  +   + + + +      D
Sbjct: 61  PHNLYGEG---PQSGTPVEICWRPEQV--ARRQMVVNVGSGMVPSPNQH-RQIIDFVPVD 114

Query: 118 QGSLEWGRAHWRSLKNSGYA 137
           + + +  R  +++ + +G  
Sbjct: 115 ENAKQAARVRYKNYQQAGCN 134


>gi|319637677|ref|ZP_07992443.1| DNA polymerase III chi subunit [Neisseria mucosa C102]
 gi|317400832|gb|EFV81487.1| DNA polymerase III chi subunit [Neisseria mucosa C102]
          Length = 146

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 3/140 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY            L+      G ++ V   S      L+  LW    + F+PH 
Sbjct: 1   MPKVTFYTHVARPAAFACRLIARAIRDGGQILVWSDSAAAVQQLDIDLWQQIPESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           V +       S  PVLL   +   N       L   A           +++ I+  +   
Sbjct: 61  VWL-PTDLMPSETPVLLAFGNALPNIPKDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
            L   R  +R+ + SG+  +
Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138


>gi|299530040|ref|ZP_07043467.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni S44]
 gi|298722020|gb|EFI62950.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni S44]
          Length = 156

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 2   RTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
             + F+    D    +    +     G R+ V  G       L+  LW+     FL H  
Sbjct: 15  TEIAFHFNAPDKLGYVCRFARKALRHGARIVVL-GDGAALSRLSPRLWSVSATDFLAHAC 73

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
           +       ++  PV+L  +    +      LV+         + + +VV I+++ D+   
Sbjct: 74  ESDGARMLAAS-PVIL--AEHLQDLPHYDVLVNLTPQVPSGFERFARVVEIVSSGDEMDR 130

Query: 122 EWGRAHWRSLKNSGYA 137
           +  RA WR     G++
Sbjct: 131 QDARARWRDYAARGFS 146


>gi|284814455|gb|ADB97587.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. multiplex]
 gi|284814457|gb|ADB97588.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. multiplex]
 gi|284814461|gb|ADB97590.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. multiplex]
          Length = 126

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 9   FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
            +      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D
Sbjct: 8   LEKPL-QLVCELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
                PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W
Sbjct: 67  --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119

Query: 129 RSLKNSG 135
           +  K  G
Sbjct: 120 KHYKTRG 126


>gi|237746981|ref|ZP_04577461.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS]
 gi|229378332|gb|EEO28423.1| DNA polymerase III chi subunit [Oxalobacter formigenes HOxBLS]
          Length = 141

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           R+ +      + + L++ LWT+    FLPH +        +S  PVLLT           
Sbjct: 32  RIVILSSDRNLLNRLDDALWTFSDSDFLPHAMLGDR---LASRSPVLLTYDDQCE-MPHH 87

Query: 90  RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           + LV+ +         +++++ +++T +    E GR  +   +  GYA
Sbjct: 88  QILVNLSPAIPACYARFDRLIELVST-ETADTEAGRQRYVHYRERGYA 134


>gi|225075093|ref|ZP_03718292.1| hypothetical protein NEIFLAOT_00092 [Neisseria flavescens
           NRL30031/H210]
 gi|224953577|gb|EEG34786.1| hypothetical protein NEIFLAOT_00092 [Neisseria flavescens
           NRL30031/H210]
          Length = 146

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G ++ V   S      L+  LW    + F+PH 
Sbjct: 1   MPKATFYTHVAQQAAFACRLIARAIRDGGQILVWSDSAAAVQQLDIDLWQQIPESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS-TIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           V +       S  PVLL   +   N       L   A           +++ I+  +   
Sbjct: 61  VWL-PTDPMPSETPVLLAFGNALPNIPQDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
            L   R  +R+ + SG+  +
Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138


>gi|121635225|ref|YP_975470.1| DNA polymerase III chi subunit [Neisseria meningitidis FAM18]
 gi|120866931|emb|CAM10691.1| DNA polymerase III chi subunit [Neisseria meningitidis FAM18]
 gi|254672905|emb|CBA07228.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha275]
 gi|261392200|emb|CAX49714.1| putative DNA polymerase III chi subunit [Neisseria meningitidis
           8013]
 gi|319410785|emb|CBY91170.1| putative DNA polymerase III chi subunit [Neisseria meningitidis WUE
           2594]
          Length = 146

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 61  IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138


>gi|156935582|ref|YP_001439498.1| DNA polymerase III subunit chi [Cronobacter sakazakii ATCC BAA-894]
 gi|156935600|ref|YP_001439516.1| DNA polymerase III subunit chi [Cronobacter sakazakii ATCC BAA-894]
 gi|156533836|gb|ABU78662.1| hypothetical protein ESA_03446 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533854|gb|ABU78680.1| hypothetical protein ESA_03465 [Cronobacter sakazakii ATCC BAA-894]
          Length = 153

 Score = 74.8 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +    +  GKR+ + C  E     ++E LW   
Sbjct: 1   MKNATFYLLDNDDTADGLSAVEQLVCDVAAARWRAGKRILIACVDEAQATRIDEALWKRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV +       ++     L+            + +VV  
Sbjct: 61  PGSFVPHNLAGEGPRGGA---PVEIAWPQKRGSSPREL-LISLLPEFAAFATAFYEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   D+   +  R  +++ + +G+
Sbjct: 117 VP-YDESQKQLARERYKAYRAAGF 139


>gi|205355208|ref|YP_002229009.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274989|emb|CAR40063.1| DNA polymerase III, chi subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326630366|gb|EGE36709.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 147

 Score = 74.8 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV +    E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIASEDEKQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140


>gi|254362288|ref|ZP_04978401.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica
           PHL213]
 gi|261492797|ref|ZP_05989344.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|153093865|gb|EDN74797.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica
           PHL213]
 gi|261311479|gb|EEY12635.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 145

 Score = 74.8 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 1   MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY          +  E     L    +  GKRV + C +E+   +++E LW    
Sbjct: 1   MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACETEQQALNIDEALWARDP 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +        +   P+ ++      N      L+   +     +  + +++  +
Sbjct: 61  DSFVPHNLSGEITTYPT---PIEISWKGKR-NAQRRDLLISLQTQLPEFIGSFTQIIDFV 116

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
              ++ +    R  ++  +  G+  + I
Sbjct: 117 PV-EETAKAQARDRYKQYRQLGWQLETI 143


>gi|78486090|ref|YP_392015.1| DNA polymerase III chi subunit, HolC [Thiomicrospira crunogena
           XCL-2]
 gi|78364376|gb|ABB42341.1| DNA polymerase III, chi subunit [Thiomicrospira crunogena XCL-2]
          Length = 146

 Score = 74.8 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 13/142 (9%)

Query: 3   TLLFYRFKNDW----EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58
            ++FY    D     E  +  L+   + + +R  ++  SE      +  LW ++ + F+P
Sbjct: 10  DVIFYVLGTDTAQQREAFMAKLVNKIHREKRRCDIRFASEDEMTRFDLSLWQYQPEAFIP 69

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           H V    +       P+ L    +      +   V        +   Y + + +++   +
Sbjct: 70  HSVQQTVQA------PIQLWADQIATPCQDVLLNVH--PDFPQNFQLYNRTIEVLDQT-E 120

Query: 119 GSLEWGRAHWRSLKNSGYAPDV 140
             ++ GR  W++ K  G  P V
Sbjct: 121 HLIQMGRERWKAYKKEGLEPTV 142


>gi|227327169|ref|ZP_03831193.1| DNA polymerase III subunit chi [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 149

 Score = 74.8 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     L  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  +++ ++ G+
Sbjct: 117 VP-YEESLKQLARDRYKTYRSVGF 139


>gi|289811597|ref|ZP_06542226.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 142

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 6   FYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW    + F+
Sbjct: 1   FYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARPAESFV 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PH +        +   PV +       N+S    L+   +        + +VV  +   +
Sbjct: 61  PHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVDFVP-YE 115

Query: 118 QGSLEWGRAHWRSLKNSGYA 137
           +   +  R  +++ + +G+ 
Sbjct: 116 ETLKQLARERYKAYRVAGFN 135


>gi|212709903|ref|ZP_03318031.1| hypothetical protein PROVALCAL_00953 [Providencia alcalifaciens DSM
           30120]
 gi|212687415|gb|EEB46943.1| hypothetical protein PROVALCAL_00953 [Providencia alcalifaciens DSM
           30120]
          Length = 162

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  +                 L    +  GKR+ + C +++  + ++E LW   
Sbjct: 14  MKKGTFYLLEQPSPQAEYEAHEWLACELAAQAWRNGKRILIACENQQQAEKMDEALWQRD 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   P+ +   +   NT     L++  S        + +V+  
Sbjct: 74  PHQFVPHNLAGEGPRYGA---PIEICWPNKRGNTPR-DILINLQSQFADFATAFHEVIDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  +++ ++ G+ 
Sbjct: 130 VPI-DETLKQLARDRYKTYRSVGFN 153


>gi|313668053|ref|YP_004048337.1| DNA polymerase III chi subunit [Neisseria lactamica ST-640]
 gi|309378514|emb|CBX22867.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005515|emb|CBN86951.1| DNA polymerase III chi subunit [Neisseria lactamica 020-06]
          Length = 146

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY            L+      G RV V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKVTFYTHVAQIPLFTCRLIARAIRDGGRVLVWSDSFGQVQELDKALWRYEAESFVPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS---TIRFLVD---EASMHIGDVDYYEKVVFIIN 114
           +         +  PVLL         +   T+  L D    A+  +      E+++ I+ 
Sbjct: 61  I-WEAGCPMPADTPVLLAAGDRIPEIAADMTVLNLSDDFWNAAPVLP-----ERILEIVG 114

Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136
                 L   R  + + + SG+
Sbjct: 115 G-SLEELAEARGRFAAYRKSGF 135


>gi|238755184|ref|ZP_04616530.1| DNA polymerase III, chi subunit HolC [Yersinia ruckeri ATCC 29473]
 gi|238706631|gb|EEP99002.1| DNA polymerase III, chi subunit HolC [Yersinia ruckeri ATCC 29473]
          Length = 149

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   +D         E     L  + +  GKRV + C S      L+E LW   
Sbjct: 1   MKNATFYLLDHDQSSGELRAHEALACDLAAERWRAGKRVLIACESREQAQRLDEALWQRA 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N+     L+       G    + +V+  
Sbjct: 61  PEQFVPHNLAGEGPKYGA---PVELAWPEKRGNSPRDL-LISLLPEFAGFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  ++S ++ G+
Sbjct: 117 VP-YEETLKQLARDRYKSYRSVGF 139


>gi|325198678|gb|ADY94134.1| DNA polymerase III, chi subunit [Neisseria meningitidis G2136]
          Length = 146

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 61  IWEMEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138


>gi|304387023|ref|ZP_07369278.1| DNA-directed DNA polymerase III chi subunit [Neisseria meningitidis
           ATCC 13091]
 gi|304338895|gb|EFM04994.1| DNA-directed DNA polymerase III chi subunit [Neisseria meningitidis
           ATCC 13091]
 gi|325128633|gb|EGC51502.1| DNA polymerase III, chi subunit [Neisseria meningitidis N1568]
          Length = 166

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 21  MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 81  IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158


>gi|268599769|ref|ZP_06133936.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae MS11]
 gi|268583900|gb|EEZ48576.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae MS11]
          Length = 166

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +        L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 21  MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 80

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     AS+         +V+ I+
Sbjct: 81  IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 133

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 134 -GNGLEDLADARERFTAYRRSGFAIE 158


>gi|254805323|ref|YP_003083544.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha14]
 gi|254668865|emb|CBA06961.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha14]
          Length = 146

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCCLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 61  IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138


>gi|261401004|ref|ZP_05987129.1| DNA polymerase III, chi subunit [Neisseria lactamica ATCC 23970]
 gi|269209122|gb|EEZ75577.1| DNA polymerase III, chi subunit [Neisseria lactamica ATCC 23970]
          Length = 146

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY            L+      G RV V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKVTFYTHVGQIPLFTCRLIARAIRDGGRVLVWSDSFGQVQELDKALWRYEAESFVPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTS---TIRFLVD---EASMHIGDVDYYEKVVFIIN 114
           +         +  PVLL         +   T+  L D    A+  +      E+++ I+ 
Sbjct: 61  I-WEAGCPMPADTPVLLAAGDRIPEIAADMTVLNLSDDFWNAAPVLP-----ERILEIVG 114

Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136
                 L   R  + + + SG+
Sbjct: 115 G-SLEELAEARGRFAAYRKSGF 135


>gi|239815709|ref|YP_002944619.1| DNA polymerase III subunit chi [Variovorax paradoxus S110]
 gi|239802286|gb|ACS19353.1| DNA polymerase III subunit chi [Variovorax paradoxus S110]
          Length = 147

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 1   MRTLLFYRFKNDWEYN-LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + F  F    + N    L++          V  G  ++ ++++  LW      F+ H
Sbjct: 1   MTEIGF-HFNLPDKANYACRLVRKAVSVRGLRVVVVGEPQMLEAVDAALWQLSPCDFIAH 59

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANT-STIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
                 +    +  PV+L     +A   +    LV+         + +E++V I+ +++ 
Sbjct: 60  -CRGDAQPHLVARSPVILCAEGADAAGLAHREMLVNLGPTVPVGFERFERLVDIV-SNET 117

Query: 119 GSLEWGRAHWRSLKNSGYA 137
              + GR+ WR   + GY+
Sbjct: 118 DDRQIGRSRWRHYADRGYS 136


>gi|282600031|ref|ZP_05972768.2| DNA polymerase III subunit chi [Providencia rustigianii DSM 4541]
 gi|282566812|gb|EFB72347.1| DNA polymerase III subunit chi [Providencia rustigianii DSM 4541]
          Length = 168

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY+ +                 L    +  GKRV + C +++  + ++E LW   
Sbjct: 20  MKKGTFYQLQQPSPQAEYEAHEWLACELAAQMWRNGKRVLIACETQQQAEKIDEALWQRD 79

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   P+ +   +   NT     L++  S        + +VV  
Sbjct: 80  PHQFVPHNLAGEGPRYGA---PIEICWPNKRGNTPR-DILINLQSQFADFATAFHEVVDF 135

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  ++  ++ G+ 
Sbjct: 136 VPI-DETLKQLARERYKIYRSVGFN 159


>gi|59801585|ref|YP_208297.1| HolC [Neisseria gonorrhoeae FA 1090]
 gi|293399671|ref|ZP_06643823.1| HolC protein [Neisseria gonorrhoeae F62]
 gi|59718480|gb|AAW89885.1| putative DNA polymerase III chi subunit [Neisseria gonorrhoeae FA
           1090]
 gi|291609922|gb|EFF39045.1| HolC protein [Neisseria gonorrhoeae F62]
          Length = 146

 Score = 74.8 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +        L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     AS+         +V+ I+
Sbjct: 61  IWETEEA-MPSDTSVLLACDGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138


>gi|254523696|ref|ZP_05135751.1| DNA polymerase III holoenzyme chi subunit [Stenotrophomonas sp.
           SKA14]
 gi|219721287|gb|EED39812.1| DNA polymerase III holoenzyme chi subunit [Stenotrophomonas sp.
           SKA14]
          Length = 141

 Score = 74.4 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L +   + G    V    +   + L+E LW +  D 
Sbjct: 1   MPRADFYLIAKPRFLTEPLRLVCELARKANDAGLFTLVLARDQAQAEELDELLWAFDDDA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
           ++PH +   D  +  +   VL+ +  +       +  L D+       +   E+V+ ++ 
Sbjct: 61  YIPHQIAGEDMDEEEAL--VLIAVPGTEAPARPLVINLRDD-----PWLGQCERVLEVVP 113

Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136
             D  + E  R  WR  K +GY
Sbjct: 114 A-DPEAREPLRERWRQYKAAGY 134


>gi|227114627|ref|ZP_03828283.1| DNA polymerase III subunit chi [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 149

 Score = 74.4 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     L  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLEHDSKSGELSAHEALACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEDSLKQLARDRYKTYRSVGF 139


>gi|190572725|ref|YP_001970570.1| DNA polymerase III subunit chi [Stenotrophomonas maltophilia K279a]
 gi|190010647|emb|CAQ44256.1| putative DNA polymerase [Stenotrophomonas maltophilia K279a]
          Length = 141

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L +   + G    V    +   + L+E LW +  D 
Sbjct: 1   MPRADFYLIAKPRFLTEPLRLVCELARKANDAGLFTLVLARDQAQAEELDELLWAFDNDA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   D  +  +   VL+ +       +  R LV         +   E+V+ ++  
Sbjct: 61  YIPHQIAGEDMDEEEAL--VLIAVPGT---DAPARPLVINLRDEP-WLGQCERVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSGYA 137
            D  + E  R  WR  K +GY 
Sbjct: 115 -DPEAREPLRERWRQYKAAGYE 135


>gi|161505036|ref|YP_001572148.1| DNA polymerase III subunit chi [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866383|gb|ABX23006.1| hypothetical protein SARI_03167 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 147

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYILDNDTAVDGLSAVEQLVCDIAAERWRSGKRVLIACEDEQQAIRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTNFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  +++ + +G+ 
Sbjct: 117 VP-YEETLKQLARERYKAYRVAGFN 140


>gi|157804263|ref|YP_001492812.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel]
 gi|157785526|gb|ABV74027.1| DNA polymerase III subunit chi [Rickettsia canadensis str. McKiel]
          Length = 154

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 21  LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTIS 80
           ++  Y    +  +    +  ++ LN+ LWT+ +  F+PHG  +         QP+ +T  
Sbjct: 22  IEKCYYSDLKSVILTTDKEQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDE 78

Query: 81  SLNANTSTIRFLV----DEASMHIGD-VDYYEKVVFI 112
             N N +++  ++        + + D ++ +++++ I
Sbjct: 79  LQNPNNASVLIIISPIDIGKILQVKDYIEVFKRIIII 115


>gi|284814451|gb|ADB97585.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. fastidiosa]
 gi|313104562|gb|ADR31658.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. fastidiosa]
 gi|313104564|gb|ADR31659.1| DNA polymerase III holoenzyme chi subunit [Xylella fastidiosa
           subsp. fastidiosa]
          Length = 126

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 9   FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
            +      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D
Sbjct: 8   LEKPL-QLVCELVRKAYDTHQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD 66

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128
                PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W
Sbjct: 67  --DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERW 119

Query: 129 RSLKNSG 135
           +  K  G
Sbjct: 120 KHYKARG 126


>gi|283834894|ref|ZP_06354635.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220]
 gi|291069153|gb|EFE07262.1| DNA polymerase III subunit chi [Citrobacter youngae ATCC 29220]
          Length = 147

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C +E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTQQDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDLLISLRVGFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQSARDRYKAYRVAGFN 140


>gi|71280374|ref|YP_267489.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H]
 gi|71146114|gb|AAZ26587.1| DNA polymerase III, chi subunit [Colwellia psychrerythraea 34H]
          Length = 157

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 40/160 (25%)

Query: 2   RTLLFYRFKNDW-----EYNLLVLLQDEYEKGK------RVSVQCGSERVRDSLNEYLWT 50
             ++FY  K+D      E     +     +         RV +    ++  + ++E LW 
Sbjct: 4   TQVMFYLLKDDVTDEKEEDTRSAIYHACLQASHFYRQNQRVYIYAKDQQHAEQIDEMLWA 63

Query: 51  WKKDGFLPHGVDVGDE----------GDFSSFQPVLLTISSLNANTS-TIRFLVDEASMH 99
           +  D F+PH +                     +PVL+ ++S   N +   +F+VD     
Sbjct: 64  FDSDSFVPHNLVGEGPKQGAMVEIGYQAPQGRRPVLINLNSAVPNFANQFQFIVD----- 118

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139
                            D+   +  R  +++ +  G+  D
Sbjct: 119 -------------FVPSDETLKQQARERFKTCRQWGFQVD 145


>gi|255066308|ref|ZP_05318163.1| DNA polymerase III, chi subunit [Neisseria sicca ATCC 29256]
 gi|255049518|gb|EET44982.1| DNA polymerase III, chi subunit [Neisseria sicca ATCC 29256]
          Length = 146

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY    D       L+      G ++ V   S+     L+  LW    + F+PH 
Sbjct: 1   MPKATFYTHAADPAAFACRLIARAIRDGGQILVWSDSDETIRRLDRDLWQQIPESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLT---ISSLNANTSTIRFLV----DEASMHIGDVDYYEKVVFII 113
           +        SS  PV L            +T+  L     +EA +         +V+ I+
Sbjct: 61  I-WQPGQPMSSETPVWLAFGDTLPTTPENATVLNLSPDFWNEAPVVPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
                  L   R  + + + +G+  +
Sbjct: 114 -GSSLEELADARERFSAYRKNGFTIE 138


>gi|329894350|ref|ZP_08270220.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC3088]
 gi|328923146|gb|EGG30469.1| DNA polymerase III chi subunit [gamma proteobacterium IMCC3088]
          Length = 145

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 12/143 (8%)

Query: 1   MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + FY  ++D          VL +    +G R+ V    E     L +  W+++ D F
Sbjct: 1   MTRVGFYVVQSDDTLASHRVAAVLAEKALNRGHRIFVLARDESHAQELYDIFWSFRHDAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           LP  V +  E   S+   +++  S+          L++ +         ++++V I+ T 
Sbjct: 61  LP--VSLWHERATSA---IVIGHSNPTPEHHDC--LINLSMTTDNFASRFQRIVEIV-TQ 112

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
               LE  R  WR  K+ G+A +
Sbjct: 113 QAHHLEAMRDAWRWYKHRGFALE 135


>gi|325144872|gb|EGC67160.1| DNA polymerase III, chi subunit [Neisseria meningitidis M01-240013]
          Length = 166

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 21  MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 81  IWETEEA-MPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 134 -GNSLEELADSRERFTAYRRSGFAIE 158


>gi|33151849|ref|NP_873202.1| DNA polymerase III subunit chi [Haemophilus ducreyi 35000HP]
 gi|33148070|gb|AAP95591.1| DNA polymerase III chi subunit [Haemophilus ducreyi 35000HP]
          Length = 153

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 3   TLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
            + FY          +  E     L    +  GKRV + C +E+   +++E LW  + D 
Sbjct: 11  QVKFYLLSQLGSDDLSAAEAMACELAAQAWRSGKRVLIACETEQQALNIDEALWAREPDS 70

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           F+PH +            P+ +   +   N     FL+   +     ++ + +++  +  
Sbjct: 71  FVPHNLAGEF---TQYATPIEICWQNKR-NAQRRDFLISLQTNLPDYINTFTQIIDFVPI 126

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D+      R  ++  +  G
Sbjct: 127 -DEKEKVHARERYKQYRQLG 145


>gi|330448739|ref|ZP_08312386.1| DNA polymerase III chi subunit, HolC family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492930|dbj|GAA06883.1| DNA polymerase III chi subunit, HolC family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 150

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 13/143 (9%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY   +  E             L    Y +G +V +   +++  + ++EYLW   
Sbjct: 1   MTHATFYIIDDKQESADTDFQCHFACHLAAMSYRQGNKVYLLAANKQQAEQIDEYLWQQD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        S   PV +  ++L  +T     L++ A         + +VV  
Sbjct: 61  PDSFVPHNLVGEGPNGGS---PVEIGWATLR-HTGHRATLINLAETAPNFAVTFAQVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135
           +   D+   +  R  +++ + +G
Sbjct: 117 VPC-DEKLKQLARERYKAYRLAG 138


>gi|261379721|ref|ZP_05984294.1| DNA polymerase III, chi subunit [Neisseria subflava NJ9703]
 gi|284797397|gb|EFC52744.1| DNA polymerase III, chi subunit [Neisseria subflava NJ9703]
          Length = 146

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G ++ V   S      L+   W    + F+PH 
Sbjct: 1   MPKATFYTHVARPAAFACRLIARAIRDGGQILVWSDSAAAVQQLDVDFWQQIPESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNAN-TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
           V +       S  PVLL   +   N +     L   A           +++ I+  +   
Sbjct: 61  VWL-PTDPMPSETPVLLAFGNALPNISQDCTVLNLSADFWSQAPAIPNRILEIV-GNSLE 118

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
            L   R  +R+ + SG+  +
Sbjct: 119 DLAEARDRFRAYRQSGFEIE 138


>gi|194437758|ref|ZP_03069853.1| DNA polymerase III, chi subunit [Escherichia coli 101-1]
 gi|256025195|ref|ZP_05439060.1| DNA polymerase III subunit chi [Escherichia sp. 4_1_40B]
 gi|260858411|ref|YP_003232302.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str.
           11368]
 gi|301329235|ref|ZP_07222216.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1]
 gi|194423254|gb|EDX39246.1| DNA polymerase III, chi subunit [Escherichia coli 101-1]
 gi|257757060|dbj|BAI28562.1| DNA polymerase III, chi subunit [Escherichia coli O26:H11 str.
           11368]
 gi|300844443|gb|EFK72203.1| DNA polymerase III subunit chi [Escherichia coli MS 78-1]
 gi|323157533|gb|EFZ43642.1| DNA polymerase III subunit chi [Escherichia coli EPECa14]
 gi|323970487|gb|EGB65746.1| DNA polymerase III chi subunit protein [Escherichia coli TA007]
          Length = 147

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTCFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|183600428|ref|ZP_02961921.1| hypothetical protein PROSTU_03999 [Providencia stuartii ATCC 25827]
 gi|188020224|gb|EDU58264.1| hypothetical protein PROSTU_03999 [Providencia stuartii ATCC 25827]
          Length = 149

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  +                 L    +  GKRV V C +    + L+E LW   
Sbjct: 1   MKNATFYLLEQPSPQVELEAHEWLACELAAQMWRDGKRVLVACETAEQAEKLDESLWQRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   P+ +       N +    L++  S        + +V+  
Sbjct: 61  PHQFVPHNLAGEGPRYGA---PIEICWPGKRGN-AQRDILINLQSQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  ++  ++ G+ 
Sbjct: 117 VPI-DETLKQLARERYKIYRSVGFN 140


>gi|212633774|ref|YP_002310299.1| DNA polymerase III subunit chi, HolC [Shewanella piezotolerans WP3]
 gi|212555258|gb|ACJ27712.1| DNA polymerase III chi subunit, HolC [Shewanella piezotolerans WP3]
          Length = 157

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 21/152 (13%)

Query: 1   MRTLLFYRFK--NDWEYNLLVLL---------QDEYEKG----KRVSVQCGSERVRDSLN 45
           M   LFY        + +  +L          +   +        V + C  +    +++
Sbjct: 1   MSQTLFYLMPNGKSTQRHEPLLALQQVYDFACELARQAFINQQW-VYIHCTDKEQAYAID 59

Query: 46  EYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDY 105
           E LW      F+PH +        +   PV +    L AN +    L++ A         
Sbjct: 60  ELLWQLAPQSFVPHNLKGEGPTGGA---PVEIGFDRLGANKNRH-VLINLADQVPQFAVN 115

Query: 106 YEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           + +++     +D       R  +R  +  G A
Sbjct: 116 FVQIID-FVANDDSHKAIARDRYRQYRTLGIA 146


>gi|325130633|gb|EGC53376.1| DNA polymerase III, chi subunit [Neisseria meningitidis OX99.30304]
 gi|325136765|gb|EGC59365.1| DNA polymerase III, chi subunit [Neisseria meningitidis M0579]
 gi|325208500|gb|ADZ03952.1| DNA polymerase III, chi subunit [Neisseria meningitidis NZ-05/33]
          Length = 166

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 21  MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 80

Query: 61  VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 81  IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 133

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 134 -GNSLEDLADARERFTAYRRSGFAIE 158


>gi|320184515|gb|EFW59317.1| DNA polymerase III chi subunit [Shigella flexneri CDC 796-83]
          Length = 147

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFK--------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY           +  E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSTVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|218768536|ref|YP_002343048.1| DNA polymerase III chi subunit [Neisseria meningitidis Z2491]
 gi|121052544|emb|CAM08884.1| DNA polymerase III chi subunit [Neisseria meningitidis Z2491]
          Length = 146

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     A +         +V+ I+
Sbjct: 61  IWETEEA-MPSEPSVLLACGGNLPRIPEGMAVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEELADARERFTAYRRSGFAIE 138


>gi|148826880|ref|YP_001291633.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG]
 gi|148718122|gb|ABQ99249.1| DNA polymerase III subunit chi [Haemophilus influenzae PittGG]
          Length = 144

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L+   +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLVASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDMLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|283786941|ref|YP_003366806.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168]
 gi|282950395|emb|CBG90043.1| DNA polymerase III, chi subunit [Citrobacter rodentium ICC168]
          Length = 147

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           MR   FY   ND         E  +  +  + +  GKRV + C +E+    L+E LW   
Sbjct: 1   MRNATFYLLDNDNTADGLSAVEQLVCEIAAERWRSGKRVLIACENEQQALRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDLLISLRVGFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQSARERYKAYRVAGFN 140


>gi|254669823|emb|CBA04186.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha153]
          Length = 146

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 61  IWETEEA-MPSETSVLLACGGNLPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138


>gi|281603542|gb|ADA76526.1| DNA polymerase III, chi subunit [Shigella flexneri 2002017]
          Length = 160

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGSA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153


>gi|240113701|ref|ZP_04728191.1| HolC [Neisseria gonorrhoeae MS11]
 gi|240122362|ref|ZP_04735318.1| HolC [Neisseria gonorrhoeae PID332]
 gi|240127077|ref|ZP_04739738.1| HolC [Neisseria gonorrhoeae SK-93-1035]
 gi|268680949|ref|ZP_06147811.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID332]
 gi|268685432|ref|ZP_06152294.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-93-1035]
 gi|268621233|gb|EEZ53633.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae PID332]
 gi|268625716|gb|EEZ58116.1| DNA polymerase III chi subunit [Neisseria gonorrhoeae SK-93-1035]
          Length = 146

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +        L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKVTFYTHVDQIPLFTCRLIARAIRDGGRILVWSDSFGRLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     AS+         +V+ I+
Sbjct: 61  IWETEEA-MPSDTSVLLACGGNLPRIPEGMAVLNLSDGFWNTASVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNGLEDLADARERFTAYRRSGFAIE 138


>gi|261377634|ref|ZP_05982207.1| DNA polymerase III, chi subunit [Neisseria cinerea ATCC 14685]
 gi|269146389|gb|EEZ72807.1| DNA polymerase III, chi subunit [Neisseria cinerea ATCC 14685]
          Length = 146

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY   +        L+      G RV V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKVTFYTHVDQIPLFTCRLIVRAIRDGGRVLVWSDSFGQVQELDKTLWQYEAESFVPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY-EKVVFIINTDDQG 119
           V    E    +  PVLL         +    +++ +           E+++ I+      
Sbjct: 61  VWTT-EYPMPTDMPVLLAAGERIPEIAENMTVLNLSDDFWNAAPVLPERILEIV-GSSLE 118

Query: 120 SLEWGRAHWRSLKNSGY 136
            L   R  + + + SG+
Sbjct: 119 ELAEARGRFAAYRKSGF 135


>gi|251792953|ref|YP_003007679.1| DNA polymerase III subunit chi [Aggregatibacter aphrophilus NJ8700]
 gi|247534346|gb|ACS97592.1| DNA polymerase III subunit chi [Aggregatibacter aphrophilus NJ8700]
          Length = 148

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 6   FYRFKND---------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           FY   +           E     L    +  GKRV + C SE     ++E LW  + D F
Sbjct: 7   FYLLTDTSPARPNLSAMESLACDLATSAWRLGKRVLLVCESEAQALKIDEALWQREPDEF 66

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +        +   P+ ++ +    N  +   L++        ++ + +++  +  +
Sbjct: 67  VPHNLS---GEPTTYATPIEISWTGKR-NAQSRDLLINLQPQLPEYINSFNQIIDFVPVE 122

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +Q      R  ++ L+  G+A
Sbjct: 123 EQPK-ALARERYKQLRQLGWA 142


>gi|271498966|ref|YP_003331991.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
 gi|270342521|gb|ACZ75286.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
          Length = 149

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     L    +  G+RV + C  E+    L+E LW  +
Sbjct: 1   MKNATFYLIESDRSSGELNACEVLACELAAARWRAGQRVLIACEDEQQALRLDEALWQRE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        S   PV L       N      L+            + +V+  
Sbjct: 61  PHAFVPHNLAGEGPRQGS---PVELAWPQKRGNAPRDL-LISLMPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   D+   +  R  +++ ++ G+
Sbjct: 117 VP-YDESLKQLARDRYKAYRSVGF 139


>gi|300718543|ref|YP_003743346.1| DNA polymerase III, chi subunit [Erwinia billingiae Eb661]
 gi|299064379|emb|CAX61499.1| DNA polymerase III, chi subunit [Erwinia billingiae Eb661]
          Length = 152

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  + D         E  +  + +  + +GKRV V C  E     L+E LW   
Sbjct: 1   MKNATFYLLETDTPVDGISALEALVCDIAEARWREGKRVLVACEDEAQAIRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N+     L+            + +VV  
Sbjct: 61  ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNSPRDL-LISLLPHFADFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  +++ ++ G+
Sbjct: 117 VP-YEESLKQLARDRYKAYRSVGF 139


>gi|67459767|ref|YP_247391.1| DNA polymerase III subunit chi [Rickettsia felis URRWXCal2]
 gi|67005300|gb|AAY62226.1| unknown [Rickettsia felis URRWXCal2]
          Length = 154

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y    +  +       ++ LN+ LWT+ +  F+PHG  +         QP+ +T   
Sbjct: 23  EKCYRSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79

Query: 82  LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114
            N N +++  ++    +         +  +++++ I +
Sbjct: 80  QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 117


>gi|226951737|ref|ZP_03822201.1| DNA polymerase III, chi subunit [Acinetobacter sp. ATCC 27244]
 gi|226837527|gb|EEH69910.1| DNA polymerase III, chi subunit [Acinetobacter sp. ATCC 27244]
          Length = 135

 Score = 73.6 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    +  ++   C    +++ L++ LW++  + F+
Sbjct: 1   MTQVSFYLFEKSTERQVESACRLCRKILNQHPQIWWYCTDSEIQNELDDKLWSFDPNSFI 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PHGV+        S  PV ++     +N   +    + A   +  +  +  ++ II  ++
Sbjct: 61  PHGVN-------QSHSPVCISEHLPPSNDWIVFNFNNHA---LEQIQDFRHIIEIIE-NN 109

Query: 118 QGSLEWGRAHWRSLKNSGYAP 138
           + + + GR  +++ +  G  P
Sbjct: 110 ETAKQLGREKFKTYRRLGIEP 130


>gi|261819784|ref|YP_003257890.1| DNA polymerase III subunit chi [Pectobacterium wasabiae WPP163]
 gi|261603797|gb|ACX86283.1| DNA-directed DNA polymerase [Pectobacterium wasabiae WPP163]
          Length = 149

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     L  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLEHDSKSGELSAHEVLACDLAAERWRAGKRVLIACEDEQQAIRLDEALWQRD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  PNAFVPHNLAGEGPRHGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  +++ ++ G+
Sbjct: 117 VP-YEESLKQLARDRYKTYRSVGF 139


>gi|170683022|ref|YP_001746662.1| DNA polymerase III subunit chi [Escherichia coli SMS-3-5]
 gi|293407979|ref|ZP_06651819.1| DNA polymerase III subunit chi [Escherichia coli B354]
 gi|300935930|ref|ZP_07150884.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1]
 gi|301024408|ref|ZP_07188094.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1]
 gi|331665928|ref|ZP_08366822.1| DNA polymerase III subunit chi [Escherichia coli TA143]
 gi|331671400|ref|ZP_08372198.1| DNA polymerase III subunit chi [Escherichia coli TA280]
 gi|331681279|ref|ZP_08381916.1| DNA polymerase III subunit chi [Escherichia coli H299]
 gi|170520740|gb|ACB18918.1| DNA polymerase III, chi subunit [Escherichia coli SMS-3-5]
 gi|291472230|gb|EFF14712.1| DNA polymerase III subunit chi [Escherichia coli B354]
 gi|300396603|gb|EFJ80141.1| DNA polymerase III subunit chi [Escherichia coli MS 69-1]
 gi|300458898|gb|EFK22391.1| DNA polymerase III subunit chi [Escherichia coli MS 21-1]
 gi|331056979|gb|EGI28973.1| DNA polymerase III subunit chi [Escherichia coli TA143]
 gi|331071245|gb|EGI42602.1| DNA polymerase III subunit chi [Escherichia coli TA280]
 gi|331081500|gb|EGI52661.1| DNA polymerase III subunit chi [Escherichia coli H299]
          Length = 160

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153


>gi|127511857|ref|YP_001093054.1| DNA polymerase III chi subunit, HolC [Shewanella loihica PV-4]
 gi|126637152|gb|ABO22795.1| DNA polymerase III chi subunit, HolC [Shewanella loihica PV-4]
          Length = 153

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 21/150 (14%)

Query: 1   MRTLLFYRFKNDWEYN--------------LLVLLQDEYEKGKR-VSVQCGSERVRDSLN 45
           M   LFY                          L +  Y +G++ V + C  ++    ++
Sbjct: 1   MPNALFYLMPQASSAATNVAKAEQESVYLFACRLAEQAY-RGQQLVYIHCNDQQQAYEVD 59

Query: 46  EYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDY 105
           E LW ++   F+PH +        +   PV +    L  N +    L++ A         
Sbjct: 60  EILWQFEPSAFVPHNLKGEGPTGGA---PVEIGFDKLGPNKNRHL-LINLADQAPQFAVN 115

Query: 106 YEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           + +++     +D       R  +R  +  G
Sbjct: 116 FGQIID-FVANDAAMKATARDRYRQYRELG 144


>gi|30065454|ref|NP_839625.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T]
 gi|56480552|ref|NP_709942.2| DNA polymerase III subunit chi [Shigella flexneri 2a str. 301]
 gi|30043718|gb|AAP19437.1| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 2457T]
 gi|56384103|gb|AAN45649.2| DNA polymerase III, chi subunit [Shigella flexneri 2a str. 301]
 gi|313646459|gb|EFS10921.1| DNA polymerase III subunit chi [Shigella flexneri 2a str. 2457T]
 gi|332748944|gb|EGJ79367.1| DNA polymerase III subunit chi [Shigella flexneri K-671]
 gi|332749219|gb|EGJ79640.1| DNA polymerase III subunit chi [Shigella flexneri 4343-70]
 gi|332749835|gb|EGJ80248.1| DNA polymerase III subunit chi [Shigella flexneri 2747-71]
 gi|332763117|gb|EGJ93360.1| DNA polymerase III chi subunit, HolC family protein [Shigella
           flexneri 2930-71]
 gi|333009110|gb|EGK28566.1| DNA polymerase III subunit chi [Shigella flexneri K-218]
 gi|333011947|gb|EGK31332.1| DNA polymerase III subunit chi [Shigella flexneri K-304]
          Length = 147

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGSA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|209694118|ref|YP_002262046.1| DNA polymerase III subunit chi [Aliivibrio salmonicida LFI1238]
 gi|208008069|emb|CAQ78210.1| DNA polymerase III, chi subunit [Aliivibrio salmonicida LFI1238]
          Length = 147

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M   LFY  ++             +  L    Y +  RV +    +     ++E LW   
Sbjct: 1   MSQALFYVLESTSPAATQPGLLKFVCQLAHYYYSQNARVYILSDDKEQALLIDELLWQND 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +         S  P+ +   +L  +      L++ A         + +VV  
Sbjct: 61  VSEFIPHNLIGEG---PKSGSPIEIGWGTLRPSGRRH-VLINLAQEVATFAVSFAQVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++   +  R  ++  +N+G A
Sbjct: 117 VPC-EEKVKQHARERYKIYRNAGRA 140


>gi|253775118|ref|YP_003037949.1| DNA polymerase III subunit chi [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164184|ref|YP_003047294.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606]
 gi|297520319|ref|ZP_06938705.1| DNA polymerase III subunit chi [Escherichia coli OP50]
 gi|301028096|ref|ZP_07191374.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1]
 gi|312965939|ref|ZP_07780165.1| DNA polymerase III subunit chi [Escherichia coli 2362-75]
 gi|31323177|gb|AAP43522.1| HolC [Escherichia coli B]
 gi|242379779|emb|CAQ34606.1| DNA polymerase III, chi subunit, subunit of DNA polymerase III,
           preinitiation complex and DNA polymerase III, holoenzyme
           [Escherichia coli BL21(DE3)]
 gi|253326162|gb|ACT30764.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253976087|gb|ACT41758.1| DNA polymerase III subunit chi [Escherichia coli B str. REL606]
 gi|253980243|gb|ACT45913.1| DNA polymerase III subunit chi [Escherichia coli BL21(DE3)]
 gi|299878813|gb|EFI87024.1| DNA polymerase III subunit chi [Escherichia coli MS 196-1]
 gi|312289182|gb|EFR17076.1| DNA polymerase III subunit chi [Escherichia coli 2362-75]
 gi|323975398|gb|EGB70499.1| DNA polymerase III chi subunit protein [Escherichia coli TW10509]
          Length = 147

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTIDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|193063698|ref|ZP_03044786.1| DNA polymerase III, chi subunit [Escherichia coli E22]
 gi|256019910|ref|ZP_05433775.1| DNA polymerase III subunit chi [Shigella sp. D9]
 gi|293476562|ref|ZP_06664970.1| DNA polymerase III subunit chi [Escherichia coli B088]
 gi|300818516|ref|ZP_07098725.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1]
 gi|300821366|ref|ZP_07101514.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7]
 gi|300916354|ref|ZP_07133097.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1]
 gi|307312966|ref|ZP_07592594.1| DNA-directed DNA polymerase [Escherichia coli W]
 gi|331645008|ref|ZP_08346125.1| DNA polymerase III subunit chi [Escherichia coli H736]
 gi|331680397|ref|ZP_08381056.1| DNA polymerase III subunit chi [Escherichia coli H591]
 gi|332281051|ref|ZP_08393464.1| DNA polymerase III subunit chi [Shigella sp. D9]
 gi|192930685|gb|EDV83291.1| DNA polymerase III, chi subunit [Escherichia coli E22]
 gi|291321015|gb|EFE60457.1| DNA polymerase III subunit chi [Escherichia coli B088]
 gi|300416333|gb|EFJ99643.1| DNA polymerase III subunit chi [Escherichia coli MS 115-1]
 gi|300526255|gb|EFK47324.1| DNA polymerase III subunit chi [Escherichia coli MS 119-7]
 gi|300528920|gb|EFK49982.1| DNA polymerase III subunit chi [Escherichia coli MS 107-1]
 gi|306907134|gb|EFN37641.1| DNA-directed DNA polymerase [Escherichia coli W]
 gi|315063566|gb|ADT77893.1| DNA polymerase III, chi subunit [Escherichia coli W]
 gi|320200611|gb|EFW75197.1| DNA polymerase III chi subunit [Escherichia coli EC4100B]
 gi|324019267|gb|EGB88486.1| DNA polymerase III subunit chi [Escherichia coli MS 117-3]
 gi|324118820|gb|EGC12712.1| DNA polymerase III chi subunit protein [Escherichia coli E1167]
 gi|331035983|gb|EGI08221.1| DNA polymerase III subunit chi [Escherichia coli H736]
 gi|331071860|gb|EGI43196.1| DNA polymerase III subunit chi [Escherichia coli H591]
 gi|332103403|gb|EGJ06749.1| DNA polymerase III subunit chi [Shigella sp. D9]
          Length = 160

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 14  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 73

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 74  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 129

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 130 VP-YEDSLKQLARERYKAYRVAGFN 153


>gi|308389702|gb|ADO32022.1| DNA polymerase III chi subunit [Neisseria meningitidis alpha710]
 gi|325201756|gb|ADY97210.1| DNA polymerase III, chi subunit [Neisseria meningitidis M01-240149]
 gi|325204532|gb|ADY99985.1| DNA polymerase III, chi subunit [Neisseria meningitidis M01-240355]
          Length = 146

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLN---ANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL             T+  L D     A +         +V+ I+
Sbjct: 61  IWEMEEA-MPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFTAYRRSGFAIE 138


>gi|90580733|ref|ZP_01236536.1| DNA polymerase III subunit chi [Vibrio angustum S14]
 gi|90438001|gb|EAS63189.1| DNA polymerase III subunit chi [Vibrio angustum S14]
          Length = 150

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 13/143 (9%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY   +  E             L    Y +G  V +   +++  + ++EYLW   
Sbjct: 1   MTHATFYIIDDKQESADSHFQCHFACHLAAMSYRQGNNVYLLAANKQQAEQIDEYLWQQD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        S   PV +  S+L  +T     L++ A         + +VV  
Sbjct: 61  PDSFVPHNLVGEGPNGGS---PVEIGWSTLR-HTGRRATLINLAENAPNFAVSFAQVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135
           +   D+   +  R  +++ + +G
Sbjct: 117 VPC-DEKLKQLARERYKAYRLAG 138


>gi|21244283|ref|NP_643865.1| DNA polymerase III subunit chi [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|166713427|ref|ZP_02244634.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|289663731|ref|ZP_06485312.1| DNA polymerase III subunit chi [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668596|ref|ZP_06489671.1| DNA polymerase III subunit chi [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294625213|ref|ZP_06703854.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664576|ref|ZP_06729918.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21109931|gb|AAM38401.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|292600487|gb|EFF44583.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605660|gb|EFF48969.1| DNA polymerase III subunit chi [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 141

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L +   +      +        ++L++ LW +  + 
Sbjct: 1   MPRADFYLIAKPRFLNEPLRLVCELARKANDANLSTLILARDAEQAEALDDLLWAFDDEA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+      A +   R LV         +   ++V+ ++  
Sbjct: 61  YVPHQIAGTDEED--ELAPVLIAAPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D  + E  R  W+  K  G
Sbjct: 115 -DPAAREPLRERWKQYKALG 133


>gi|58580455|ref|YP_199471.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622415|ref|YP_449787.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188578610|ref|YP_001915539.1| DNA polymerase III subunit chi [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58425049|gb|AAW74086.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366355|dbj|BAE67513.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188523062|gb|ACD61007.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 141

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L +          +        ++L++ LW +  + 
Sbjct: 1   MPRADFYLIAKPRFLNEPLRLVCELARKANNANLSTLILARDAEQAEALDDLLWAFDDEA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+      A +   R LV         +   ++V+ ++  
Sbjct: 61  YVPHQIAGTDEED--ELAPVLIAAPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D  + E  R  W+  K  G
Sbjct: 115 -DPAAREPLRERWKQYKALG 133


>gi|309792900|ref|ZP_07687328.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7]
 gi|308123186|gb|EFO60448.1| DNA polymerase III subunit chi [Escherichia coli MS 145-7]
 gi|323965648|gb|EGB61102.1| DNA polymerase III chi subunit protein [Escherichia coli M863]
 gi|327250204|gb|EGE61923.1| DNA polymerase III subunit chi [Escherichia coli STEC_7v]
          Length = 147

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      ++      L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSNPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|254037281|ref|ZP_04871358.1| DNA polymerase III [Escherichia sp. 1_1_43]
 gi|226840387|gb|EEH72389.1| DNA polymerase III [Escherichia sp. 1_1_43]
          Length = 147

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLNAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|15804851|ref|NP_290892.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 EDL933]
 gi|15834490|ref|NP_313263.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
           Sakai]
 gi|26251167|ref|NP_757207.1| DNA polymerase III subunit chi [Escherichia coli CFT073]
 gi|74314738|ref|YP_313157.1| DNA polymerase III subunit chi [Shigella sonnei Ss046]
 gi|82546488|ref|YP_410435.1| DNA polymerase III subunit chi [Shigella boydii Sb227]
 gi|82779325|ref|YP_405674.1| DNA polymerase III subunit chi [Shigella dysenteriae Sd197]
 gi|91213814|ref|YP_543800.1| DNA polymerase III subunit chi [Escherichia coli UTI89]
 gi|110644618|ref|YP_672348.1| DNA polymerase III subunit chi [Escherichia coli 536]
 gi|110808001|ref|YP_691521.1| DNA polymerase III subunit chi [Shigella flexneri 5 str. 8401]
 gi|117626603|ref|YP_859926.1| DNA polymerase III subunit chi [Escherichia coli APEC O1]
 gi|157159204|ref|YP_001465767.1| DNA polymerase III subunit chi [Escherichia coli E24377A]
 gi|157163734|ref|YP_001461052.1| DNA polymerase III subunit chi [Escherichia coli HS]
 gi|168751048|ref|ZP_02776070.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754839|ref|ZP_02779846.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760512|ref|ZP_02785519.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766548|ref|ZP_02791555.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774021|ref|ZP_02799028.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782784|ref|ZP_02807791.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784907|ref|ZP_02809914.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797837|ref|ZP_02822844.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170021733|ref|YP_001726687.1| DNA polymerase III subunit chi [Escherichia coli ATCC 8739]
 gi|170766907|ref|ZP_02901360.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627]
 gi|187734100|ref|YP_001882957.1| DNA polymerase III subunit chi [Shigella boydii CDC 3083-94]
 gi|188496447|ref|ZP_03003717.1| DNA polymerase III, chi subunit [Escherichia coli 53638]
 gi|191167277|ref|ZP_03029095.1| DNA polymerase III, chi subunit [Escherichia coli B7A]
 gi|191170788|ref|ZP_03032340.1| DNA polymerase III, chi subunit [Escherichia coli F11]
 gi|193069853|ref|ZP_03050803.1| DNA polymerase III, chi subunit [Escherichia coli E110019]
 gi|194426628|ref|ZP_03059182.1| DNA polymerase III, chi subunit [Escherichia coli B171]
 gi|194433898|ref|ZP_03066171.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012]
 gi|195937284|ref|ZP_03082666.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805655|ref|ZP_03247992.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813184|ref|ZP_03254513.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821682|ref|ZP_03262002.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400926|ref|YP_002273803.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921756|ref|YP_002295840.1| DNA polymerase III subunit chi [Escherichia coli SE11]
 gi|215489601|ref|YP_002332032.1| DNA polymerase III subunit chi [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217325710|ref|ZP_03441794.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218551555|ref|YP_002385347.1| DNA polymerase III subunit chi [Escherichia fergusonii ATCC 35469]
 gi|218556806|ref|YP_002389720.1| DNA polymerase III subunit chi [Escherichia coli IAI1]
 gi|218561417|ref|YP_002394330.1| DNA polymerase III subunit chi [Escherichia coli S88]
 gi|218692646|ref|YP_002400858.1| DNA polymerase III subunit chi [Escherichia coli ED1a]
 gi|218698007|ref|YP_002405674.1| DNA polymerase III subunit chi [Escherichia coli 55989]
 gi|218702962|ref|YP_002410591.1| DNA polymerase III subunit chi [Escherichia coli IAI39]
 gi|218707865|ref|YP_002415384.1| DNA polymerase III subunit chi [Escherichia coli UMN026]
 gi|227886687|ref|ZP_04004492.1| DNA polymerase III, chi subunit [Escherichia coli 83972]
 gi|237703934|ref|ZP_04534415.1| DNA polymerase III [Escherichia sp. 3_2_53FAA]
 gi|254796279|ref|YP_003081116.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
           TW14359]
 gi|260847090|ref|YP_003224868.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str.
           12009]
 gi|260871011|ref|YP_003237413.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str.
           11128]
 gi|261225378|ref|ZP_05939659.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255369|ref|ZP_05947902.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285671|ref|YP_003502489.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|293402884|ref|ZP_06646981.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412]
 gi|293417758|ref|ZP_06660380.1| DNA polymerase III subunit chi [Escherichia coli B185]
 gi|298378410|ref|ZP_06988294.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302]
 gi|300899408|ref|ZP_07117663.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1]
 gi|300906106|ref|ZP_07123825.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1]
 gi|300923936|ref|ZP_07139946.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1]
 gi|300928084|ref|ZP_07143632.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1]
 gi|300950213|ref|ZP_07164153.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1]
 gi|300957119|ref|ZP_07169360.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1]
 gi|300972384|ref|ZP_07171917.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1]
 gi|300988163|ref|ZP_07178583.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1]
 gi|301050055|ref|ZP_07196967.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1]
 gi|301304690|ref|ZP_07210798.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1]
 gi|301643394|ref|ZP_07243444.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1]
 gi|306815523|ref|ZP_07449672.1| DNA polymerase III subunit chi [Escherichia coli NC101]
 gi|307140954|ref|ZP_07500310.1| DNA polymerase III subunit chi [Escherichia coli H736]
 gi|309784108|ref|ZP_07678750.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617]
 gi|312973924|ref|ZP_07788095.1| DNA polymerase III subunit chi [Escherichia coli 1827-70]
 gi|331650392|ref|ZP_08351464.1| DNA polymerase III subunit chi [Escherichia coli M605]
 gi|331656093|ref|ZP_08357081.1| DNA polymerase III subunit chi [Escherichia coli M718]
 gi|331660840|ref|ZP_08361772.1| DNA polymerase III subunit chi [Escherichia coli TA206]
 gi|331671167|ref|ZP_08372000.1| DNA polymerase III subunit chi [Escherichia coli TA271]
 gi|12519268|gb|AAG59458.1|AE005657_18 DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|26111599|gb|AAN83781.1|AE016771_292 DNA polymerase III, chi subunit [Escherichia coli CFT073]
 gi|13364714|dbj|BAB38659.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73858215|gb|AAZ90922.1| DNA polymerase III chi subunit [Shigella sonnei Ss046]
 gi|81243473|gb|ABB64183.1| DNA polymerase III, chi subunit [Shigella dysenteriae Sd197]
 gi|81247899|gb|ABB68607.1| DNA polymerase III chi subunit [Shigella boydii Sb227]
 gi|91075388|gb|ABE10269.1| DNA polymerase III, chi subunit [Escherichia coli UTI89]
 gi|110346210|gb|ABG72447.1| DNA polymerase III, chi subunit [Escherichia coli 536]
 gi|110617549|gb|ABF06216.1| DNA polymerase III, chi subunit [Shigella flexneri 5 str. 8401]
 gi|115515727|gb|ABJ03802.1| DNA polymerase III subunit chi [Escherichia coli APEC O1]
 gi|157069414|gb|ABV08669.1| DNA polymerase III, chi subunit [Escherichia coli HS]
 gi|157081234|gb|ABV20942.1| DNA polymerase III, chi subunit [Escherichia coli E24377A]
 gi|169756661|gb|ACA79360.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739]
 gi|170124345|gb|EDS93276.1| DNA polymerase III, chi subunit [Escherichia albertii TW07627]
 gi|187431092|gb|ACD10366.1| DNA polymerase III, chi subunit [Shigella boydii CDC 3083-94]
 gi|187770208|gb|EDU34052.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014810|gb|EDU52932.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188491646|gb|EDU66749.1| DNA polymerase III, chi subunit [Escherichia coli 53638]
 gi|188999780|gb|EDU68766.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357771|gb|EDU76190.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364253|gb|EDU82672.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368872|gb|EDU87288.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375030|gb|EDU93446.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379542|gb|EDU97958.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|190902730|gb|EDV62461.1| DNA polymerase III, chi subunit [Escherichia coli B7A]
 gi|190909012|gb|EDV68599.1| DNA polymerase III, chi subunit [Escherichia coli F11]
 gi|192956907|gb|EDV87360.1| DNA polymerase III, chi subunit [Escherichia coli E110019]
 gi|194415367|gb|EDX31635.1| DNA polymerase III, chi subunit [Escherichia coli B171]
 gi|194417879|gb|EDX33975.1| DNA polymerase III, chi subunit [Shigella dysenteriae 1012]
 gi|208725456|gb|EDZ75057.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734461|gb|EDZ83148.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741805|gb|EDZ89487.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162326|gb|ACI39759.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209749468|gb|ACI73041.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749470|gb|ACI73042.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749472|gb|ACI73043.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749474|gb|ACI73044.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209749476|gb|ACI73045.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|209915015|dbj|BAG80089.1| DNA polymerase III chi subunit [Escherichia coli SE11]
 gi|215267673|emb|CAS12131.1| DNA polymerase III, chi subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217321931|gb|EEC30355.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354739|emb|CAV01801.1| DNA polymerase III, chi subunit [Escherichia coli 55989]
 gi|218359097|emb|CAQ91758.1| DNA polymerase III, chi subunit [Escherichia fergusonii ATCC 35469]
 gi|218363575|emb|CAR01232.1| DNA polymerase III, chi subunit [Escherichia coli IAI1]
 gi|218368186|emb|CAR05994.1| DNA polymerase III, chi subunit [Escherichia coli S88]
 gi|218372948|emb|CAR20829.1| DNA polymerase III, chi subunit [Escherichia coli IAI39]
 gi|218430210|emb|CAR11067.1| DNA polymerase III, chi subunit [Escherichia coli ED1a]
 gi|218434962|emb|CAR15903.1| DNA polymerase III, chi subunit [Escherichia coli UMN026]
 gi|222036031|emb|CAP78776.1| DNA polymerase III subunit chi [Escherichia coli LF82]
 gi|226901846|gb|EEH88105.1| DNA polymerase III [Escherichia sp. 3_2_53FAA]
 gi|227836260|gb|EEJ46726.1| DNA polymerase III, chi subunit [Escherichia coli 83972]
 gi|254595679|gb|ACT75040.1| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|257762237|dbj|BAI33734.1| DNA polymerase III, chi subunit [Escherichia coli O103:H2 str.
           12009]
 gi|257767367|dbj|BAI38862.1| DNA polymerase III, chi subunit [Escherichia coli O111:H- str.
           11128]
 gi|281181357|dbj|BAI57687.1| DNA polymerase III chi subunit [Escherichia coli SE15]
 gi|284924429|emb|CBG37554.1| DNA polymerase III, chi subunit [Escherichia coli 042]
 gi|290765544|gb|ADD59505.1| DNA polymerase III, chi subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|291429799|gb|EFF02813.1| DNA polymerase III subunit chi [Escherichia coli FVEC1412]
 gi|291430476|gb|EFF03474.1| DNA polymerase III subunit chi [Escherichia coli B185]
 gi|294489855|gb|ADE88611.1| DNA polymerase III, chi subunit [Escherichia coli IHE3034]
 gi|298280744|gb|EFI22245.1| DNA polymerase III subunit chi [Escherichia coli FVEC1302]
 gi|300298213|gb|EFJ54598.1| DNA polymerase III subunit chi [Escherichia coli MS 185-1]
 gi|300305973|gb|EFJ60493.1| DNA polymerase III subunit chi [Escherichia coli MS 200-1]
 gi|300316137|gb|EFJ65921.1| DNA polymerase III subunit chi [Escherichia coli MS 175-1]
 gi|300356986|gb|EFJ72856.1| DNA polymerase III subunit chi [Escherichia coli MS 198-1]
 gi|300402049|gb|EFJ85587.1| DNA polymerase III subunit chi [Escherichia coli MS 84-1]
 gi|300410963|gb|EFJ94501.1| DNA polymerase III subunit chi [Escherichia coli MS 45-1]
 gi|300419814|gb|EFK03125.1| DNA polymerase III subunit chi [Escherichia coli MS 182-1]
 gi|300450434|gb|EFK14054.1| DNA polymerase III subunit chi [Escherichia coli MS 116-1]
 gi|300463881|gb|EFK27374.1| DNA polymerase III subunit chi [Escherichia coli MS 187-1]
 gi|300840040|gb|EFK67800.1| DNA polymerase III subunit chi [Escherichia coli MS 124-1]
 gi|301078224|gb|EFK93030.1| DNA polymerase III subunit chi [Escherichia coli MS 146-1]
 gi|305851185|gb|EFM51640.1| DNA polymerase III subunit chi [Escherichia coli NC101]
 gi|307556429|gb|ADN49204.1| DNA polymerase III, chi subunit [Escherichia coli ABU 83972]
 gi|307629335|gb|ADN73639.1| DNA polymerase III subunit chi [Escherichia coli UM146]
 gi|308928101|gb|EFP73566.1| DNA polymerase III subunit chi [Shigella dysenteriae 1617]
 gi|309704763|emb|CBJ04114.1| DNA polymerase III, chi subunit [Escherichia coli ETEC H10407]
 gi|310331458|gb|EFP98714.1| DNA polymerase III subunit chi [Escherichia coli 1827-70]
 gi|312948912|gb|ADR29739.1| DNA polymerase III subunit chi [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315255616|gb|EFU35584.1| DNA polymerase III subunit chi [Escherichia coli MS 85-1]
 gi|315288384|gb|EFU47782.1| DNA polymerase III subunit chi [Escherichia coli MS 110-3]
 gi|315293630|gb|EFU52982.1| DNA polymerase III subunit chi [Escherichia coli MS 153-1]
 gi|315298975|gb|EFU58229.1| DNA polymerase III subunit chi [Escherichia coli MS 16-3]
 gi|320174753|gb|EFW49882.1| DNA polymerase III chi subunit [Shigella dysenteriae CDC 74-1112]
 gi|320177613|gb|EFW52603.1| DNA polymerase III chi subunit [Shigella boydii ATCC 9905]
 gi|320190607|gb|EFW65257.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320193623|gb|EFW68258.1| DNA polymerase III chi subunit [Escherichia coli WV_060327]
 gi|320639016|gb|EFX08662.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
           G5101]
 gi|320644386|gb|EFX13451.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str.
           493-89]
 gi|320649703|gb|EFX18227.1| DNA polymerase III subunit chi [Escherichia coli O157:H- str. H
           2687]
 gi|320655100|gb|EFX23061.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660606|gb|EFX28067.1| DNA polymerase III subunit chi [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665533|gb|EFX32579.1| DNA polymerase III subunit chi [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323162057|gb|EFZ47929.1| DNA polymerase III subunit chi [Escherichia coli E128010]
 gi|323166622|gb|EFZ52381.1| DNA polymerase III subunit chi [Shigella sonnei 53G]
 gi|323176173|gb|EFZ61765.1| DNA polymerase III subunit chi [Escherichia coli 1180]
 gi|323181992|gb|EFZ67403.1| DNA polymerase III subunit chi [Escherichia coli 1357]
 gi|323189860|gb|EFZ75138.1| DNA polymerase III subunit chi [Escherichia coli RN587/1]
 gi|323380354|gb|ADX52622.1| DNA-directed DNA polymerase [Escherichia coli KO11]
 gi|323935381|gb|EGB31729.1| DNA polymerase III chi [Escherichia coli E1520]
 gi|323940177|gb|EGB36371.1| DNA polymerase III chi subunit protein [Escherichia coli E482]
 gi|323945992|gb|EGB42030.1| DNA polymerase III chi [Escherichia coli H120]
 gi|323950672|gb|EGB46550.1| DNA polymerase III chi subunit protein [Escherichia coli H252]
 gi|323955545|gb|EGB51309.1| DNA polymerase III chi subunit protein [Escherichia coli H263]
 gi|323960300|gb|EGB55941.1| DNA polymerase III chi subunit protein [Escherichia coli H489]
 gi|324005160|gb|EGB74379.1| DNA polymerase III subunit chi [Escherichia coli MS 57-2]
 gi|324013723|gb|EGB82942.1| DNA polymerase III subunit chi [Escherichia coli MS 60-1]
 gi|324112117|gb|EGC06095.1| DNA polymerase III chi subunit protein [Escherichia fergusonii
           B253]
 gi|326345408|gb|EGD69151.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. 1125]
 gi|326346736|gb|EGD70470.1| DNA polymerase III chi subunit [Escherichia coli O157:H7 str. 1044]
 gi|331040786|gb|EGI12944.1| DNA polymerase III subunit chi [Escherichia coli M605]
 gi|331046447|gb|EGI18537.1| DNA polymerase III subunit chi [Escherichia coli M718]
 gi|331051882|gb|EGI23921.1| DNA polymerase III subunit chi [Escherichia coli TA206]
 gi|331061756|gb|EGI33682.1| DNA polymerase III subunit chi [Escherichia coli TA271]
 gi|332083259|gb|EGI88490.1| DNA polymerase III subunit chi [Shigella boydii 5216-82]
 gi|332083710|gb|EGI88928.1| DNA polymerase III subunit chi [Shigella dysenteriae 155-74]
 gi|332087007|gb|EGI92141.1| DNA polymerase III subunit chi [Shigella boydii 3594-74]
 gi|332346337|gb|AEE59671.1| DNA polymerase III subunit [Escherichia coli UMNK88]
 gi|333010225|gb|EGK29658.1| DNA polymerase III subunit chi [Shigella flexneri VA-6]
 gi|333011248|gb|EGK30662.1| DNA polymerase III subunit chi [Shigella flexneri K-272]
 gi|333012145|gb|EGK31527.1| DNA polymerase III subunit chi [Shigella flexneri K-227]
          Length = 147

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|237729196|ref|ZP_04559677.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2]
 gi|226908925|gb|EEH94843.1| DNA polymerase III subunit chi [Citrobacter sp. 30_2]
          Length = 147

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           MR   FY   ND         E  +  +  + +  GKRV + C +E+    L+E LW   
Sbjct: 1   MRNATFYILDNDNTVDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +       N+S    L+            + +V+  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAW-PEKRNSSPRDLLISLRVGFADFATAFTEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQSARDRYKAYRVAGFN 140


>gi|145629512|ref|ZP_01785310.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21]
 gi|145639006|ref|ZP_01794614.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII]
 gi|144978355|gb|EDJ88119.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.1-21]
 gi|145271978|gb|EDK11887.1| DNA polymerase III subunit chi [Haemophilus influenzae PittII]
 gi|309750966|gb|ADO80950.1| DNA polymerase III, chi subunit [Haemophilus influenzae R2866]
          Length = 144

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRQQG 135


>gi|194364313|ref|YP_002026923.1| DNA polymerase III subunit chi [Stenotrophomonas maltophilia
           R551-3]
 gi|194347117|gb|ACF50240.1| DNA polymerase III chi subunit HolC [Stenotrophomonas maltophilia
           R551-3]
          Length = 141

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L +   + G    V    +   + L+E LW +  D 
Sbjct: 1   MPRADFYLIAKPRFLTEPLRLVCELARKANDAGLFTLVLARDQAQAEELDELLWAFDNDA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTI-SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
           ++PH +   D  +  +   VL+ +  +       +  L DE       +   E+V+ ++ 
Sbjct: 61  YIPHQIAGEDMDEEEAL--VLIAVPGTEAPARPLVINLRDE-----PWLGQCERVLEVVP 113

Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136
             D  + E  R  WR  K +GY
Sbjct: 114 A-DPEAREPLRERWRQYKAAGY 134


>gi|224825297|ref|ZP_03698402.1| DNA polymerase III chi subunit HolC [Lutiella nitroferrum 2002]
 gi|224602218|gb|EEG08396.1| DNA polymerase III chi subunit HolC [Lutiella nitroferrum 2002]
          Length = 140

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + FY    D +     L Q  + KG+R+ V    E      +  LW+     F+PH 
Sbjct: 1   MPRIDFYTNVADPQAFACRLAQTVFRKGERLLVWLADEGQLAGFSARLWSIADIQFVPH- 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                E   +   P+ LT             L++         +++ +++ I+   D+ S
Sbjct: 60  --CELEAGEAPETPIWLTTRL--PAELEHPVLLNLGPELPAHPEHFARILEIV-GCDEAS 114

Query: 121 LEWGRAHWRSLKNSGYAPD 139
           L   R  +R  + + Y  +
Sbjct: 115 LATARERFRFYRAAAYEIE 133


>gi|330824942|ref|YP_004388245.1| DNA polymerase III subunit chi HolC [Alicycliphilus denitrificans
           K601]
 gi|329310314|gb|AEB84729.1| DNA polymerase III chi subunit HolC [Alicycliphilus denitrificans
           K601]
          Length = 154

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L +       RV +  G+ +    L+  LW      F+ H 
Sbjct: 10  MTEVAFHFNAPDKLAYVCRLARKAMRHDARVVI-TGAAQDLQQLDRMLWALGTTDFVAHC 68

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           ++     +     PV+L   +     S    LV+           + ++V +++  DQ  
Sbjct: 69  LE-DAGEEMLQLSPVVLARDACV--CSHRDMLVNVGDTVPEGFAQFARLVEVVSQSDQAD 125

Query: 121 LEWGRAHWRSLKNSGY 136
               R  WR     GY
Sbjct: 126 RSRARERWRHYAARGY 141


>gi|319788016|ref|YP_004147491.1| DNA polymerase III subunit chi [Pseudoxanthomonas suwonensis 11-1]
 gi|317466528|gb|ADV28260.1| DNA polymerase III chi subunit HolC [Pseudoxanthomonas suwonensis
           11-1]
          Length = 140

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 15/142 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLL-----QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY           +LL     +  +   +   V        + +++ LW+++ D 
Sbjct: 1   MPRADFYLIAKPRFAEQPLLLVCELAKRAHAANQFTLVLARDAAQAEEIDDLLWSFEPDA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISS-LNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
           F+PH +   +E       PVL+            +  L D A          E+V+ ++ 
Sbjct: 61  FIPHQIAGDEE---DELTPVLVVPPEIEAPPRPLVINLRDAAWTEPC-----ERVLEVVP 112

Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136
             D  +    R  WR  +  GY
Sbjct: 113 A-DPAARAPLRERWRQYQALGY 133


>gi|319762862|ref|YP_004126799.1| DNA polymerase iii chi subunit holc [Alicycliphilus denitrificans
           BC]
 gi|317117423|gb|ADU99911.1| DNA polymerase III chi subunit HolC [Alicycliphilus denitrificans
           BC]
          Length = 154

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 4/136 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L +       RV +  G+ +    L+  LW      F+ H 
Sbjct: 10  MTEVAFHFNAPDKLAYVCRLARKAMRHDARVVI-TGAAQDLQQLDRMLWALGTTDFVAHC 68

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           ++     +     PV+L   +     S    LV+           + ++V +++  DQ  
Sbjct: 69  LE-DAGEEMLQLSPVVLARDACV--CSHRDMLVNVGDTVPEGFAQFARLVEVVSQSDQAD 125

Query: 121 LEWGRAHWRSLKNSGY 136
               R  WR     GY
Sbjct: 126 RSRARERWRHYVARGY 141


>gi|161870423|ref|YP_001599595.1| DNA polymerase III chi subunit [Neisseria meningitidis 053442]
 gi|161595976|gb|ABX73636.1| DNA polymerase III chi subunit [Neisseria meningitidis 053442]
          Length = 146

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     A +         +V+ I+
Sbjct: 61  IWETEEA-MPSETFVLLACGGNLPRIPEGMAVLNLSDGFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEELADARERFTAYRRSGFAIE 138


>gi|304396394|ref|ZP_07378275.1| DNA-directed DNA polymerase [Pantoea sp. aB]
 gi|308189154|ref|YP_003933285.1| DNA polymerase III, chi subunit [Pantoea vagans C9-1]
 gi|304355903|gb|EFM20269.1| DNA-directed DNA polymerase [Pantoea sp. aB]
 gi|308059664|gb|ADO11836.1| DNA polymerase III, chi subunit [Pantoea vagans C9-1]
          Length = 152

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  + D         E  +  L +  +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYVLETDATSDGLSAVEALVCNLAETRWRAGKRVLIACEDEQQAIRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L         S+ R L+     H  D       V  
Sbjct: 61  ANAFVPHNLAGEGPRYGA---PVELAWPQRR--GSSQRDLLISLLPHFADFATAFHEVID 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
               +    +  R  +++ ++ G+
Sbjct: 116 FVPYEDALKQLARDRYKAYRSVGF 139


>gi|21230123|ref|NP_636040.1| DNA polymerase III subunit chi [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769886|ref|YP_244648.1| DNA polymerase III subunit chi [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993101|ref|YP_001905111.1| DNA polymerase III subunit chi [Xanthomonas campestris pv.
           campestris str. B100]
 gi|294668031|ref|ZP_06733164.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325917729|ref|ZP_08179917.1| DNA polymerase III, chi subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|21111653|gb|AAM39964.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66575218|gb|AAY50628.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167734861|emb|CAP53072.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris
           pv. campestris]
 gi|292601902|gb|EFF45716.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325536058|gb|EGD07866.1| DNA polymerase III, chi subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 141

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND--WEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY        +  L     L +   +      +        ++L++ LW +  + 
Sbjct: 1   MPRADFYLIAKPRFLDEPLRLVCELARKANDANLSTLILARDAAQAEALDDLLWAFDDEA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+      A +   R LV         +   ++V+ ++  
Sbjct: 61  YVPHQIAGTDEED--ELAPVLIATPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D  + E  R  W+  K  G
Sbjct: 115 -DPAAREPLRERWKQYKALG 133


>gi|88798083|ref|ZP_01113670.1| DNA polymerase III subunit chi [Reinekea sp. MED297]
 gi|88779280|gb|EAR10468.1| DNA polymerase III subunit chi [Reinekea sp. MED297]
          Length = 140

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + F+   +  +      +  L      K  +V +   S    + +++ LW+   D F
Sbjct: 1   MTKIDFHILPSADDSATYHYVARLANKARGKAHQVLIAVNSSEELEPVSQALWSVSPDSF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           L H         F    P+ LT S           L++           +++V+ ++ + 
Sbjct: 61  LAH--TNCATAPF----PLQLTASEEC--GDHHDVLINLCHETPTFFSRFKRVIEVV-SQ 111

Query: 117 DQGSLEWGRAHWRSLKNSGYAPD 139
           D   L+  R+ +R   ++GY  +
Sbjct: 112 DPIRLQASRSRYRDYSDNGYPIE 134


>gi|262376974|ref|ZP_06070200.1| DNA polymerase III chi subunit [Acinetobacter lwoffii SH145]
 gi|262308012|gb|EEY89149.1| DNA polymerase III chi subunit [Acinetobacter lwoffii SH145]
          Length = 135

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    +  R+ + C    ++  L+E LW++    F+
Sbjct: 1   MAKVSFYLFEKSPERQVDSTCRLCRKILRQPARIWLLCADTDLQQQLDERLWSFDPASFI 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PHG+D          QP      S      +   + +     +     +  ++ II    
Sbjct: 61  PHGID----------QPQATVCISATLPEQSDWIIFNFNPEALEPYTKFSHIIEIIENH- 109

Query: 118 QGSLEWGRAHWRSLKNSGYAPD 139
           + + + GR  ++  +  G  PD
Sbjct: 110 ETAKQLGREKFKQYRRLGIEPD 131


>gi|157829183|ref|YP_001495425.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933911|ref|YP_001650700.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. Iowa]
 gi|157801664|gb|ABV76917.1| DNA polymerase III subunit chi [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908998|gb|ABY73294.1| DNA polymerase III, chi subunit [Rickettsia rickettsii str. Iowa]
          Length = 154

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y    +  +       ++ LN+ LWT+ +  F+PHG  +         QP+ +T   
Sbjct: 23  EKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79

Query: 82  LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114
            N N +++  ++    +         +  +++++ I +
Sbjct: 80  QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 117


>gi|15893269|ref|NP_360983.1| DNA polymerase III subunit chi [Rickettsia conorii str. Malish 7]
 gi|34581064|ref|ZP_00142544.1| hypothetical protein [Rickettsia sibirica 246]
 gi|229587243|ref|YP_002845744.1| DNA polymerase III subunit chi [Rickettsia africae ESF-5]
 gi|238651118|ref|YP_002916976.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic]
 gi|15620489|gb|AAL03884.1| unknown [Rickettsia conorii str. Malish 7]
 gi|28262449|gb|EAA25953.1| unknown [Rickettsia sibirica 246]
 gi|228022293|gb|ACP54001.1| DNA polymerase III chi subunit HolC [Rickettsia africae ESF-5]
 gi|238625216|gb|ACR47922.1| DNA polymerase III subunit chi [Rickettsia peacockii str. Rustic]
          Length = 154

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y    +  +       ++ LN+ LWT+ +  F+PHG  +         QP+ +T   
Sbjct: 23  EKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 79

Query: 82  LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114
            N N +++  ++    +         +  +++++ I +
Sbjct: 80  QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 117


>gi|315617672|gb|EFU98278.1| DNA polymerase III subunit chi [Escherichia coli 3431]
          Length = 147

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRNGKRVLIACEDEQQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  VESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|259907064|ref|YP_002647420.1| DNA polymerase III subunit chi [Erwinia pyrifoliae Ep1/96]
 gi|224962686|emb|CAX54141.1| DNA polymerase III, chi subunit HolC [Erwinia pyrifoliae Ep1/96]
 gi|283476864|emb|CAY72711.1| holC [Erwinia pyrifoliae DSM 12163]
          Length = 151

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  + D         E  +  L +  + +GKRV + C  E     L+E LW   
Sbjct: 1   MKNATFYLLETDIPVDGLSAHEALVCSLAEARWREGKRVLIACEDEAQAIRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139


>gi|332535157|ref|ZP_08410966.1| DNA polymerase III chi subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035427|gb|EGI71926.1| DNA polymerase III chi subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 148

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           Y  G+RV +         +++E +W +  D F+PH +        +   PV + I+    
Sbjct: 35  YRNGQRVFICVNDNEAACAIDEIIWAFDPDSFVPHNLQGEGPKGGA---PVEIGITPPVG 91

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           N    + L++ A+     +  + +V   +   +  + +  R  ++ L+  G
Sbjct: 92  NR---KVLINLATQLPDYIRRFNQVFDFVPV-EPAAKQAARERFKKLRQLG 138


>gi|59711019|ref|YP_203795.1| DNA polymerase III subunit chi [Vibrio fischeri ES114]
 gi|197336037|ref|YP_002155168.1| DNA polymerase III subunit chi [Vibrio fischeri MJ11]
 gi|59479120|gb|AAW84907.1| DNA polymerase III, chi subunit [Vibrio fischeri ES114]
 gi|197317527|gb|ACH66974.1| DNA polymerase III subunit chi [Vibrio fischeri MJ11]
          Length = 147

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M   LFY  +              +  L    Y +  RV V    +     ++E LW + 
Sbjct: 1   MSQALFYVLEPTSPAATTDGQLKFVCQLAHYYYSQNARVYVLAQDKEQALLIDEALWQYD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F PH +         S  P+ +   +L ++      L++ A         + +VV  
Sbjct: 61  VSEFTPHNLVGEG---PKSGSPIEIGWGTLRSSGRRH-VLINLAQEVASFAVSFAQVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++ S +  R  ++  +N+G A
Sbjct: 117 VPC-EEKSKQQARERYKIYRNAGRA 140


>gi|89075939|ref|ZP_01162314.1| DNA polymerase III, chi subunit [Photobacterium sp. SKA34]
 gi|89048380|gb|EAR53958.1| DNA polymerase III, chi subunit [Photobacterium sp. SKA34]
          Length = 150

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 13/143 (9%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY   +  E             L    Y +G  V +   +++  + ++EYLW   
Sbjct: 1   MTHATFYIIDDKQESADSHFQCHFACHLAAMSYRQGNNVYLLAENKKQAEQIDEYLWQQD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        S   PV +  S+L  +T     L++ A         + +VV  
Sbjct: 61  PDSFVPHNLVGEGPNGGS---PVEIGWSTLR-HTGRRATLINLAENAPNFAVSFAQVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135
           +   D+   +  R  +++ + +G
Sbjct: 117 VPC-DEKLKQLARERYKAYRLAG 138


>gi|16132081|ref|NP_418680.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89110975|ref|AP_004755.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.
           W3110]
 gi|170083698|ref|YP_001733018.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238903360|ref|YP_002929156.1| DNA polymerase III, chi subunit [Escherichia coli BW2952]
 gi|123454|sp|P28905|HOLC_ECOLI RecName: Full=DNA polymerase III subunit chi
 gi|34810156|pdb|1EM8|A Chain A, Crystal Structure Of Chi And Psi Subunit Heterodimer From
           Dna Pol Iii
 gi|34810158|pdb|1EM8|C Chain C, Crystal Structure Of Chi And Psi Subunit Heterodimer From
           Dna Pol Iii
 gi|41740|emb|CAA78524.1| DNA polymerase III holoenzyme chi subunit [Escherichia coli]
 gi|145537|gb|AAA70368.1| DNA polymerase III chi subunit [Escherichia coli]
 gi|537101|gb|AAA97156.1| DNA polymerase III chi subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1790709|gb|AAC77216.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85677006|dbj|BAE78256.1| DNA polymerase III, chi subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|169891533|gb|ACB05240.1| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860832|gb|ACR62830.1| DNA polymerase III, chi subunit [Escherichia coli BW2952]
 gi|260450921|gb|ACX41343.1| DNA-directed DNA polymerase [Escherichia coli DH1]
 gi|315138810|dbj|BAJ45969.1| DNA polymerase III subunit chi [Escherichia coli DH1]
 gi|742337|prf||2009369A DNA polymerase III:SUBUNIT=chi
          Length = 147

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      + +S    L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRS-SSRRDILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|310766277|gb|ADP11227.1| DNA polymerase III subunit chi [Erwinia sp. Ejp617]
          Length = 151

 Score = 72.9 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  + D         E  +  L +  + +GKRV + C  E     L+E LW   
Sbjct: 1   MKNATFYLLETDIPVDGLSAHEALVCSLAEARWREGKRVLIACEDEAQAIRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139


>gi|332991783|gb|AEF01838.1| DNA polymerase III chi subunit [Alteromonas sp. SN2]
          Length = 141

 Score = 72.9 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 1   MRTLLFYRF---KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  ++FY+              L+ D +   +++SV C +++  + ++E+LW    + F+
Sbjct: 1   MPQVVFYQLSAGDTSVASRASELIADAFANKQKISVLCDTQKQAEEVDEFLWQLPANRFV 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PH +         S  PV +         +  + +V+  S  +   + + +++  +  DD
Sbjct: 61  PHNLYGEG---PQSGTPVEICWQPEQV--ARRQMVVNVGSGMVPSPNQHRQIIDFVPVDD 115

Query: 118 QGSLEWGRAHWRSLKNSGYA 137
           + + +  R  +++ + +G  
Sbjct: 116 E-AKQAARVRYKNYQQAGCN 134


>gi|323171704|gb|EFZ57350.1| DNA polymerase III subunit chi [Escherichia coli LT-68]
          Length = 147

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWHSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV +      +++     L+   +        + +VV  
Sbjct: 61  AESFVPHNLAGEGPRGGA---PVEIAWPQKRSSSPR-DILISLRTSFADFATAFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ + +G+ 
Sbjct: 117 VP-YEDSLKQLARERYKAYRVAGFN 140


>gi|251791282|ref|YP_003006003.1| DNA polymerase III subunit chi [Dickeya zeae Ech1591]
 gi|247539903|gb|ACT08524.1| DNA-directed DNA polymerase [Dickeya zeae Ech1591]
          Length = 149

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E     L    +  G+RV + C  E+    L+E LW  +
Sbjct: 1   MKNATFYLIESDRVSGELSACEALACDLAAARWRAGQRVLIACEDEQQALKLDEALWQRE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  PHAFVPHNLAGEGPRQGA---PVELAWPQKRGNAPRDL-LISLMPQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   ++   +  R  +++ ++ G+
Sbjct: 117 VP-YEESLKQLARDRYKAYRSVGF 139


>gi|319776319|ref|YP_004138807.1| DNA polymerase III subunit chi [Haemophilus influenzae F3047]
 gi|317450910|emb|CBY87136.1| DNA polymerase III, chi subunit [Haemophilus influenzae F3047]
          Length = 144

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 9/136 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW      F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPSEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDD-ALR 121

Query: 122 EWGRAHWRSLKNSGYA 137
              R  ++ L+  G+A
Sbjct: 122 TQARERYKQLRALGWA 137


>gi|260583023|ref|ZP_05850805.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae
           NT127]
 gi|260093874|gb|EEW77780.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae
           NT127]
 gi|301170151|emb|CBW29755.1| DNA polymerase III, chi subunit [Haemophilus influenzae 10810]
          Length = 144

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESEAQALEIDERLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|120598094|ref|YP_962668.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1]
 gi|146293835|ref|YP_001184259.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens
           CN-32]
 gi|120558187|gb|ABM24114.1| DNA polymerase III chi subunit, HolC [Shewanella sp. W3-18-1]
 gi|145565525|gb|ABP76460.1| DNA polymerase III chi subunit, HolC [Shewanella putrefaciens
           CN-32]
          Length = 176

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
             L Q  Y K + V + C  + +   ++E LW ++   F+PH +        +   PV +
Sbjct: 48  CQLAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPHNLKGEGPITGA---PVEI 104

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
               L AN S    L++ A         + +++     +D       R  +R  ++ G  
Sbjct: 105 GFDRLGANKSRQL-LINIADQAPPFAVNFGQIID-FVANDDQHKAVARERYRQYRDLGIE 162


>gi|157965013|ref|YP_001499837.1| DNA polymerase III subunit chi [Rickettsia massiliae MTU5]
 gi|157844789|gb|ABV85290.1| DNA polymerase III chi subunit HolC [Rickettsia massiliae MTU5]
          Length = 156

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y    +  +       ++ LN+ LWT+ +  F+PHG  +         QP+ +T   
Sbjct: 25  EKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITDEL 81

Query: 82  LNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIIN 114
            N N +++  ++    +         +  +++++ I +
Sbjct: 82  QNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITD 119


>gi|325577889|ref|ZP_08148122.1| DNA-directed DNA polymerase III chi subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160319|gb|EGC72446.1| DNA-directed DNA polymerase III chi subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 143

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GKRV + C +E     ++E LW    + F+PH +
Sbjct: 7   FYLLNPEKKITVEQLACDLAAQAWRLGKRVLIACETEEQAFLIDEALWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                       P+ ++      N      L++           + +++  +   ++   
Sbjct: 67  SGEATQYAP---PIEISWKGKR-NAQRRDLLINLQMEVPDFSHSFTQLIDFVPV-EETQK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L++ G
Sbjct: 122 AQARERYKVLRSQG 135


>gi|294648979|ref|ZP_06726427.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292825114|gb|EFF83869.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 135

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 14/141 (9%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    +  ++   C    +++ L++ LW++  + F+
Sbjct: 1   MTQVSFYLFEKSTERQVESACRLCRKILNQHPQIWWYCTDSEIQNELDDKLWSFDPNSFI 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PHG+D        S Q        L  +   I F  +  ++    +  +  ++ II  ++
Sbjct: 61  PHGIDQSHSSVCISEQ--------LPPSNDWIVFNFNNHAL--EQIQDFRHIIEIIE-NN 109

Query: 118 QGSLEWGRAHWRSLKNSGYAP 138
           + + + GR  +++ +  G  P
Sbjct: 110 ETAKQLGREKFKTYRRLGIEP 130


>gi|261494837|ref|ZP_05991315.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309548|gb|EEY10773.1| DNA-directed DNA polymerase III chi subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 145

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 1   MRTLLFYRFK-------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M+ + FY          +  E     L    +   KRV + C +E+   +++E LW    
Sbjct: 1   MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLSKRVLIACETEQQALNIDEALWARDP 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFII 113
           D F+PH +        +   P+ ++      N      L+   +     +  + +++  +
Sbjct: 61  DSFVPHNLSGEITTYPT---PIEISWKGKR-NAQRRDLLISLQTQLPEFIGSFTQIIDFV 116

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
              ++ +    R  ++  +  G+  + I
Sbjct: 117 PV-EETAKAQARDRYKQYRQLGWQLETI 143


>gi|319897049|ref|YP_004135244.1| DNA polymerase iii, chi subunit [Haemophilus influenzae F3031]
 gi|329123469|ref|ZP_08252033.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius
           ATCC 11116]
 gi|317432553|emb|CBY80913.1| DNA polymerase III, chi subunit [Haemophilus influenzae F3031]
 gi|327471051|gb|EGF16506.1| DNA-directed DNA polymerase III chi subunit [Haemophilus aegyptius
           ATCC 11116]
          Length = 144

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 9/136 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSGYA 137
              R  ++ L+  G+A
Sbjct: 122 TQARERYKQLRALGWA 137


>gi|113461407|ref|YP_719476.1| DNA polymerase III subunit chi [Haemophilus somnus 129PT]
 gi|112823450|gb|ABI25539.1| DNA polymerase III, chi subunit [Haemophilus somnus 129PT]
          Length = 147

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 14  EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ 73
           E     L    +  GK+V + C +E     L+E LW    D F+PH +        +   
Sbjct: 23  ESLACDLAASAWRLGKKVLITCETEEQALKLDEALWQRDPDEFVPHNLSGEMTSYVT--- 79

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           P+ ++      NT     L++  S     +  + +++  +   D+      R  ++SL++
Sbjct: 80  PIEISWQGKR-NTQRRDILINLQSQLPDFIMSFNQLIDFVPV-DEQLKILARERYKSLRS 137

Query: 134 SG 135
            G
Sbjct: 138 QG 139


>gi|319427209|gb|ADV55283.1| DNA polymerase III chi subunit HolC [Shewanella putrefaciens 200]
          Length = 170

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
             L Q  Y K + V + C  + +   ++E LW ++   F+PH +        +   PV +
Sbjct: 42  CQLAQQAYIKQQLVYIHCQDKNLALEIDELLWQFEPTAFVPHNLKGEGPITGA---PVEI 98

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
               L AN S    L++ A         + +++     +D       R  +R  ++ G  
Sbjct: 99  GFDRLGANKSRQL-LINIADQAPPFAVNFGQIID-FVANDDQHKAVARERYRQYRDLGIE 156


>gi|255020896|ref|ZP_05292952.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254969687|gb|EET27193.1| DNA polymerase III chi subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 143

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 1   MRTLLFYRFKNDWE------YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKD 54
           M +  FYR   +          +  ++   ++   +V++ C  E + +S+++ LWT++  
Sbjct: 1   MPSASFYRLPANLLTATEQHRAVCRVVAKAWQVLGQVNILCRDEELAESMDDLLWTYQAG 60

Query: 55  GFLPHGVDVGDEGDFSSFQPVLLTISSLNA--NTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            F PHG            +PV L   +  +    +    LV       G++    +++  
Sbjct: 61  AFTPHGR--------DPQEPVCLYAGTDASVLRPAPALALV-GLRELPGNLPDAARLLDF 111

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           I   D+  +   R  +R L+ +GY 
Sbjct: 112 IP-PDESGVADARQRYRILREAGYT 135


>gi|188532526|ref|YP_001906323.1| DNA polymerase III subunit chi [Erwinia tasmaniensis Et1/99]
 gi|188027568|emb|CAO95415.1| DNA polymerase III, chi subunit HolC [Erwinia tasmaniensis Et1/99]
          Length = 151

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  + D         E  +  L +  + +GKRV + C  E     L+E LW   
Sbjct: 1   MKNATFYLLETDAPVGELSAQEALVCSLAEARWREGKRVLIACEDEAQAIRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139


>gi|237807327|ref|YP_002891767.1| DNA polymerase III chi subunit HolC [Tolumonas auensis DSM 9187]
 gi|237499588|gb|ACQ92181.1| DNA polymerase III chi subunit HolC [Tolumonas auensis DSM 9187]
          Length = 159

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 1   MRTLLFYRF---KNDWE---------YNL-LVLLQDEYEKGKRVSVQCGSERVRDSLNEY 47
           M  + FY      +  +           L   L  + + + + + +   ++   + L+E 
Sbjct: 7   MPQVTFYLLPDEASPTQICDGLSHVVAVLACQLTTERFRQNQTLFLLTQTQVQAEQLDEM 66

Query: 48  LWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107
           LW      F+PHG+    +    +  PV +          + + L++ A         + 
Sbjct: 67  LWQQDPHSFVPHGLS---DEATVTQAPVEIGTGM---PKRSRQVLINLADGIPAFAGRFA 120

Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +++  +   D+   +  R  ++  +  G+  + +
Sbjct: 121 QIIDFVPA-DEIQKQQARERYKQYRALGFTLETV 153


>gi|301156608|emb|CBW16079.1| DNA polymerase III, chi subunit [Haemophilus parainfluenzae T3T1]
          Length = 143

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GKRV + C +E     ++E LW    + F+PH +
Sbjct: 7   FYLLNPEKKITVEQLACDLAAQAWRLGKRVLIACETEEQAFLIDEALWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                       P+ ++      N      L++           + +++  +   ++   
Sbjct: 67  SGEATQYAP---PIEISWKGKR-NAQRRDLLINLQMEVPDFSHSFTQLIDFVPV-EETQK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L++ G
Sbjct: 122 AQARERYKILRSQG 135


>gi|149907706|ref|ZP_01896453.1| DNA polymerase III, chi subunit [Moritella sp. PE36]
 gi|149809376|gb|EDM69305.1| DNA polymerase III, chi subunit [Moritella sp. PE36]
          Length = 147

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 1   MRTLLFYRFKND---WEYNLL-------VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50
           M+ + FY  +      E ++         L  + Y++G+RV +    E   + ++EYLW 
Sbjct: 1   MKKVTFYIMQESKNGVEASMPQHHELACKLAGEFYQQGQRVYIHANDESAANQVDEYLWQ 60

Query: 51  WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110
                F+PH +      + +   PV +            + L++           + +++
Sbjct: 61  LDASSFVPHNLQGEGPRNGA---PVEIGFQ---PPRHRYQVLINLHDQTPQFAVNFNQII 114

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135
             +     G  +  R  ++  + +G
Sbjct: 115 DFVP-HQDGLKQQARERYKHYRQTG 138


>gi|290473521|ref|YP_003466391.1| DNA polymerase III subunit chi [Xenorhabdus bovienii SS-2004]
 gi|289172824|emb|CBJ79595.1| DNA polymerase III, chi subunit [Xenorhabdus bovienii SS-2004]
          Length = 154

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 1   MRTLLFYRFKNDWEYNL-------------LVLLQDEYEKGKRVSVQCGSERVRDSLNEY 47
           M+   FY  +   +  L               L  D++  GKRV + C S++  + L+E 
Sbjct: 1   MKNATFYLLEKLSQEQLSSSDELQPHEWLACQLAADQWRAGKRVLIACESQQQAEKLDEA 60

Query: 48  LWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107
           LW  +   F+PH +        +   PV L      +N      LV            + 
Sbjct: 61  LWQREPSQFVPHNLAGEGPRYGA---PVELCWPQKRSNAPR-DILVTLLPHFADFATAFH 116

Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKN 133
           +V+  +   D+   +  R  ++  ++
Sbjct: 117 EVIDFVPI-DENLKQLARERYKVYRS 141


>gi|170718967|ref|YP_001784132.1| DNA polymerase III subunit chi [Haemophilus somnus 2336]
 gi|168827096|gb|ACA32467.1| DNA-directed DNA polymerase [Haemophilus somnus 2336]
          Length = 147

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 14  EYNL-LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72
           E +L   L    +  GK+V + C +E     L+E LW    D F+PH +        +  
Sbjct: 22  EESLTCDLAASAWRLGKKVLITCETEEQALKLDEALWQRDPDEFVPHNLSGEMTSYVT-- 79

Query: 73  QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
            P+ ++      NT     L++  S     +  + +++  +   D+      R  ++SL+
Sbjct: 80  -PIEISWQGKR-NTQRRDILINLQSQLPDFIMSFNQLIDFVPV-DEQLKILARERYKSLR 136

Query: 133 NSG 135
           + G
Sbjct: 137 SQG 139


>gi|88859090|ref|ZP_01133731.1| DNA polymerase III, chi subunit [Pseudoalteromonas tunicata D2]
 gi|88819316|gb|EAR29130.1| DNA polymerase III, chi subunit [Pseudoalteromonas tunicata D2]
          Length = 146

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 17/144 (11%)

Query: 1   MRTLLFYRFKNDWEYNLLV-----LLQD----EYEKGKRVSVQCGSERVRDSLNEYLWTW 51
           M  + FY  K + E +  +     L        Y +G+RV +   ++     ++EYLW +
Sbjct: 1   MNAI-FYVQKQENEPDSPIAAHFDLAAKIAADCYRQGQRVFIYTENKTDAHLIDEYLWQF 59

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
           + + F+PH +    EG  +   PV +  S+   N    + L++ A      +  + +V  
Sbjct: 60  EANSFVPHNLQG--EGPHNGA-PVEIGDSTPVGNR---KILINLALHVPDFIRRFNQVYD 113

Query: 112 IINTDDQGSLEWGRAHWRSLKNSG 135
            +    +   +  R  ++ L+  G
Sbjct: 114 FVPFQ-EEQKQAARERYKQLRQLG 136


>gi|171463869|ref|YP_001797982.1| DNA polymerase III chi subunit HolC [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193407|gb|ACB44368.1| DNA polymerase III chi subunit HolC [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 154

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 16/149 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEK---GK--RVSVQCGSERVRDSLNEYLWTWKKDG 55
           M  + F+   +D       L +  +     G+  R  V  G +     LN+ LW++    
Sbjct: 1   MARIDFHSNVSDKLEYACRLARKIWSATPEGEPVRNIVMVGEKADLQKLNDLLWSFSSTD 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNA---NTSTIRFLVDE----ASMHIGDVDYYEK 108
           FLPH      E D ++  P++LT    +A   N      ++      ++     V  Y +
Sbjct: 61  FLPH---CFIEDDAAAETPIVLTDDFASAVLGNLLHADVMIHLGMRMSADVPALVARYPR 117

Query: 109 VVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           +V ++ T ++     GR  +++ ++ G+ 
Sbjct: 118 IVEVV-TVNEAERLAGRERFKAYRDLGHE 145


>gi|78049239|ref|YP_365414.1| DNA polymerase III subunit chi [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925504|ref|ZP_08186895.1| DNA polymerase III, chi subunit [Xanthomonas perforans 91-118]
 gi|78037669|emb|CAJ25414.1| DNA polymerase III holoenzyme chi subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325544096|gb|EGD15488.1| DNA polymerase III, chi subunit [Xanthomonas perforans 91-118]
          Length = 141

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 1   MRTLLFYRFKND-----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M    FY              +  L +   +      +     +  ++L++ LW +  + 
Sbjct: 1   MPRADFYLIAKPRFLNEPLRLVCELARKANDANLPTLILARDTQQAEALDDLLWAFDDEA 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           ++PH +   DE D     PVL+      A +   R LV         +   ++V+ ++  
Sbjct: 61  YVPHQIAGTDEED--ELAPVLIAAPEFAAPS---RPLVINLRDDP-YLGACDRVLEVVPA 114

Query: 116 DDQGSLEWGRAHWRSLKNSG 135
            D  + E  R  W+  K  G
Sbjct: 115 -DPAAREPLRERWKQYKALG 133


>gi|317046769|ref|YP_004114417.1| DNA-directed DNA polymerase [Pantoea sp. At-9b]
 gi|316948386|gb|ADU67861.1| DNA-directed DNA polymerase [Pantoea sp. At-9b]
          Length = 152

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++D         E  +  L +  +  GKR+ + C  E+  + L+E LW   
Sbjct: 1   MKNATFYVMESDTASDGLSAIEALVCDLAEARWRDGKRILIACTDEQQANRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L         S+ R L+        D       V  
Sbjct: 61  ANAFVPHNLAGEGPRYGA---PVELAWPQRR--GSSPRDLLISLLPQFADFATAFHEVID 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
               ++   +  R  +++ ++ G+
Sbjct: 116 FVPYEESQKQLARDRYKAYRSVGF 139


>gi|332290073|ref|YP_004420925.1| DNA polymerase III subunit chi [Gallibacterium anatis UMN179]
 gi|330432969|gb|AEC18028.1| DNA polymerase III subunit chi [Gallibacterium anatis UMN179]
          Length = 145

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 3   TLLFYRF------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
             LFY F      +N  E     L  D +  GK+V + C +E     ++E LW      F
Sbjct: 4   QALFYVFSNTTTQENPLENKACDLAADAWRLGKKVLISCQNEEQAFLIDELLWQRDPQQF 63

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +     G      PV +       N+     L+  +         + +V+  +   
Sbjct: 64  VPHNLSGEVSG---FMTPVEICW-PGKRNSQRRDLLISLSLQVPEFALLFPQVIEFVPA- 118

Query: 117 DQGSLEWGRAHWRSLKNSG 135
           D+      R  ++  +  G
Sbjct: 119 DEQLKALARERYKYYRQLG 137


>gi|260914369|ref|ZP_05920838.1| DNA-directed DNA polymerase III chi subunit [Pasteurella dagmatis
           ATCC 43325]
 gi|260631470|gb|EEX49652.1| DNA-directed DNA polymerase III chi subunit [Pasteurella dagmatis
           ATCC 43325]
          Length = 142

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 6   FYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           FY    ++  E     L    +  GKRV + C +E+    ++E LW    + F+PH +  
Sbjct: 7   FYLLSEQSQVEKIACDLAASAWRLGKRVLIACETEQQALDIDEALWVRDVEEFVPHNLSG 66

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
                 +   P+ ++      N      L++  +     V  +  ++  +   ++     
Sbjct: 67  EV---TTYATPIEISWKGKR-NAQRRDLLINLQTEIPDYVSSFNHMIDFVPV-EENLKVL 121

Query: 124 GRAHWRSLKNSG 135
            R  ++ L+  G
Sbjct: 122 ARERYKQLRQLG 133


>gi|145631354|ref|ZP_01787125.1| DNA polymerase III subunit chi [Haemophilus influenzae R3021]
 gi|144983013|gb|EDJ90517.1| DNA polymerase III subunit chi [Haemophilus influenzae R3021]
          Length = 144

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW      F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPSEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|315634646|ref|ZP_07889930.1| DNA-directed DNA polymerase III chi subunit [Aggregatibacter segnis
           ATCC 33393]
 gi|315476594|gb|EFU67342.1| DNA-directed DNA polymerase III chi subunit [Aggregatibacter segnis
           ATCC 33393]
          Length = 148

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 14/141 (9%)

Query: 6   FYRFK---------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           FY            +  E     L    +  GKRV + C SE    +++E LW  + D F
Sbjct: 7   FYLLSDSSSARSNLSAVESLACDLAASAWRLGKRVLLVCESEAQALNIDEALWQREPDEF 66

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +        +   P+ ++ +    N  +   L++        ++ + +++  +  +
Sbjct: 67  VPHNLSGEA---TTYATPIEISWTGKR-NAQSRDLLINLQPQLPEYINSFNQIIDFVPVE 122

Query: 117 DQGSLEWGRAHWRSLKNSGYA 137
           +Q      R  ++ L+  G+A
Sbjct: 123 EQPK-ALARERYKQLRQLGWA 142


>gi|319942637|ref|ZP_08016945.1| hypothetical protein HMPREF9464_02164 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803816|gb|EFW00748.1| hypothetical protein HMPREF9464_02164 [Sutterella wadsworthensis
           3_1_45B]
          Length = 134

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 34  QCGSERV--RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRF 91
           +CG  R      L+E LW +    FLPH   V  +   ++  P+LL+          +  
Sbjct: 24  RCGRRRRKKLTELDELLWRFDDLAFLPH---VFADDCHAAETPILLSTKLPQLTG-DVLV 79

Query: 92  LVDEA--SMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           L+D+A  +    +   + +++ +++T +   L+  R  WR+ K +G
Sbjct: 80  LLDDALPADWQKEFGRFSRIIDVVST-EPTELKLSRDRWRAYKAAG 124


>gi|292486863|ref|YP_003529733.1| DNA polymerase III subunit chi [Erwinia amylovora CFBP1430]
 gi|292900740|ref|YP_003540109.1| DNA polymerase III subunit chi [Erwinia amylovora ATCC 49946]
 gi|291200588|emb|CBJ47719.1| DNA polymerase III, Chi subunit [Erwinia amylovora ATCC 49946]
 gi|291552280|emb|CBA19317.1| DNA polymerase III, chi subunit [Erwinia amylovora CFBP1430]
 gi|312170932|emb|CBX79191.1| DNA polymerase III, chi subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 151

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  + D         E  +  L +  + +GKRV + C  E     L+E LW   
Sbjct: 1   MKNATFYLLETDIPVDGLSAQEALVCSLAEARWREGKRVLIACEDEVQAIRLDEALWQRP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L+            + +V+  
Sbjct: 61  ASAFVPHNLAGEGPKYGA---PVELAWPQRRGNAPRDL-LISLLPQFADFATAFYEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEASLKQLARDRYKAYRSVGF 139


>gi|77361340|ref|YP_340915.1| DNA polymerase III subunit chi [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876251|emb|CAI87473.1| DNA polymerase III, chi subunit [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 148

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           Y  G+RV +   +E    +++E LW +  D F+PH +        +   PV +  +    
Sbjct: 35  YRLGQRVFICVDNENTAFAIDETLWAFDPDSFVPHNLQGEGPKGGA---PVEIGTTPPVG 91

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           N    + L++ A+     +  + +V   +   +  + +  R  ++ L+  G
Sbjct: 92  NR---KVLINLANNLPDFIRRFNQVFDFVPV-EAVAKQAARERFKKLRQLG 138


>gi|309973082|gb|ADO96283.1| DNA polymerase III, chi subunit [Haemophilus influenzae R2846]
          Length = 144

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCKSESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|317494178|ref|ZP_07952594.1| DNA polymerase III chi subunit protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917951|gb|EFV39294.1| DNA polymerase III chi subunit protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 149

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKN--------DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++          E     L  +++  GKR+ + C S+     L+E LW   
Sbjct: 1   MKQATFYLLEHHQPDGELDAVEALACDLAAEQWRSGKRILIACQSQEQAVKLDEALWARD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +    EG      PV L+      N      +         D       V  
Sbjct: 61  PHQFVPHNLAG--EGPHYGA-PVELSWPGKRGNAPRELMIC--LQTEFADFATAFHEVID 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
               +    +  R  ++  ++ G+
Sbjct: 116 FVPYEDALKQLARERYKIYRSVGF 139


>gi|32034863|ref|ZP_00134969.1| COG2927: DNA polymerase III, chi subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 123

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
             L  + +  GKRV + C +E+   +++E LW    D F+PH +            P+ +
Sbjct: 3   CDLAANAWRLGKRVLIACETEQQALNIDEALWARDPDSFVPHNLSGEV---TQYATPIEI 59

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           +      N      L+   +     ++ + +++  +  ++   ++  R  ++  +  G
Sbjct: 60  SWKGKR-NAQRRDVLISLQTAVPDFINSFNQIIDFVPANETEKVQ-ARERYKQYRQLG 115


>gi|16273306|ref|NP_439550.1| DNA polymerase III subunit chi [Haemophilus influenzae Rd KW20]
 gi|260580767|ref|ZP_05848593.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae
           RdAW]
 gi|1170335|sp|P43749|HOLC_HAEIN RecName: Full=DNA polymerase III subunit chi
 gi|1574233|gb|AAC23044.1| DNA polymerase III, chi subunit (holC) [Haemophilus influenzae Rd
           KW20]
 gi|260092584|gb|EEW76521.1| DNA-directed DNA polymerase subunit chi [Haemophilus influenzae
           RdAW]
          Length = 144

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESEAQALEIDERLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDLLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|238921312|ref|YP_002934827.1| DNA polymerase III subunit chi [Edwardsiella ictaluri 93-146]
 gi|238870881|gb|ACR70592.1| DNA polymerase III subunit chi [Edwardsiella ictaluri 93-146]
          Length = 149

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  +   E +           L    +  GKRV + C S+     L+E LW   
Sbjct: 1   MKQATFYLLEQPQEADTPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L+       ++    L+            + +V+  
Sbjct: 61  PQQFVPHSLAGEGPRFGA---PVELSW-PGKRGSAPRELLICLLPTFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEDVLKQLARERYKAYRSVGF 139


>gi|269140440|ref|YP_003297141.1| DNA polymerase III subunit chi [Edwardsiella tarda EIB202]
 gi|267986101|gb|ACY85930.1| DNA polymerase III subunit chi [Edwardsiella tarda EIB202]
 gi|304560233|gb|ADM42897.1| DNA polymerase III chi subunit [Edwardsiella tarda FL6-60]
          Length = 149

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  +     +           L    +  GKRV + C S+     L+E LW   
Sbjct: 1   MKQATFYLLEQPQAADAPDDVETLACDLACQHWRAGKRVLLACASQEQALRLDEALWARD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L+       ++    L+            + +V+  
Sbjct: 61  PQQFVPHSLAGEGPRFGA---PVELSW-PGKRGSAPRELLISLLPTFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +   +    +  R  +++ ++ G+
Sbjct: 117 VP-YEDALKQLARERYKAYRSVGF 139


>gi|68250085|ref|YP_249197.1| DNA polymerase III subunit chi [Haemophilus influenzae 86-028NP]
 gi|145632853|ref|ZP_01788586.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655]
 gi|229846748|ref|ZP_04466855.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1]
 gi|68058284|gb|AAX88537.1| DNA polymerase III, chi subunit [Haemophilus influenzae 86-028NP]
 gi|144986509|gb|EDJ93075.1| DNA polymerase III subunit chi [Haemophilus influenzae 3655]
 gi|229810237|gb|EEP45956.1| DNA polymerase III subunit chi [Haemophilus influenzae 7P49H1]
          Length = 144

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|330999221|ref|ZP_08322939.1| DNA polymerase III subunit chi family protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329575287|gb|EGG56835.1| DNA polymerase III subunit chi family protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 154

 Score = 70.9 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  L F+    +      + ++          V   ++      +  LW ++   F+PHG
Sbjct: 13  MSDLAFHTGVENRFKYACLAMRKAQRLNMSACVLLETDDELRRFDNMLWAFEPTSFIPHG 72

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV-DEASMHI-GDVDYYEKVVFIINTDDQ 118
                +        V L+  + +   + +  L+   A +     ++ + K++ I+   D 
Sbjct: 73  RPNTPDMQRGG---VALSTHAADLPGAELLVLLTHGAPIDTKALMERFPKIIDIV-GRDD 128

Query: 119 GSLEWGRAHWRSLKNSGYAPDVI 141
             L  GR  + + K  G  P V+
Sbjct: 129 PELTEGRHRYVAYKRQGIEPTVV 151


>gi|145588809|ref|YP_001155406.1| DNA polymerase III chi subunit, HolC [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047215|gb|ABP33842.1| DNA polymerase III chi subunit, HolC [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 155

 Score = 70.9 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 16/149 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEK---GK--RVSVQCGSERVRDSLNEYLWTWKKDG 55
           M  + F+    D    +  L++  +     G   R  V  G +     L+  LWT+    
Sbjct: 1   MARIDFHSNVGDKLEYVCRLIRKIWSATAEGHPVRQIVIVGDKGDLQKLDSLLWTFSTTD 60

Query: 56  FLPHGVDVGDEGDFSSFQPVLL-----TISSLNANTSTIRFLVDEASMHIGDVDYYEK-- 108
           FLPH        + ++  P++L     + +      + +   +    M    +   E+  
Sbjct: 61  FLPH---CSINHEAAAETPIVLADDFASTAFSQIPHADVLIHI-GVKMPPDVLGLVERFP 116

Query: 109 VVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
            +  + T ++     GR  +++ +  G+ 
Sbjct: 117 RIVEVVTVNEAERLAGRERFKAYRALGHE 145


>gi|291327106|ref|ZP_06127006.2| DNA polymerase III, chi subunit [Providencia rettgeri DSM 1131]
 gi|291311567|gb|EFE52020.1| DNA polymerase III, chi subunit [Providencia rettgeri DSM 1131]
          Length = 168

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND-----WEYN---LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY+ K        E +      L    +  GKRV V C +++  + ++E LW   
Sbjct: 20  MKKGTFYQLKQASPHPELEAHEWLACELAAQMWRSGKRVLVACETQQQAEKIDEALWQRD 79

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   P+ +   +   NT     L++  +        + +VV  
Sbjct: 80  PHQFVPHNLAGEGPRYGA---PIEICWPAKRGNTPR-DVLINLQNQFADFATAFHEVVDF 135

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  +++ ++ G+ 
Sbjct: 136 VPI-DETLKQLARERYKTYRSVGFN 159


>gi|298369124|ref|ZP_06980442.1| DNA polymerase III, chi subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283127|gb|EFI24614.1| DNA polymerase III, chi subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 145

 Score = 70.9 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 6/141 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY    +       L          V V   S      ++  LW +  + F+PH 
Sbjct: 1   MPKATFYTHVAEPAVFSCRLAARAMRDSH-VLVWSDSAETVARIDRDLWQFDPESFIPH- 58

Query: 61  VDVGDEG-DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDV-DYYEKVVFIINTDDQ 118
            ++   G    S  PVLL              +++ +   + D      +V  I+     
Sbjct: 59  -EIWPTGSPVPSETPVLLASGFELPELPHGFAVLNLSPDFLSDAPAPPVRVFEIV-GTGL 116

Query: 119 GSLEWGRAHWRSLKNSGYAPD 139
             L   R  +++ +  G+  +
Sbjct: 117 EELAEARERFKAYRGRGFEIE 137


>gi|261867746|ref|YP_003255668.1| DNA polymerase III subunit chi [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413078|gb|ACX82449.1| DNA polymerase III subunit chi [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 149

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 14/139 (10%)

Query: 6   FYRFK---------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           FY            +  E     L    +  GKRV + C +E    +++E LW  + D F
Sbjct: 7   FYLLSDASPAQTNLSAVESLACNLAASAWRLGKRVLLACENEAQALNIDEALWQREPDEF 66

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +        +   P+ ++ +    N  +   L++        ++ + +++  +   
Sbjct: 67  VPHNLSGEA---TTYATPIEISWTGKR-NAQSRDLLINLQPQLPEFINSFNQIIDFVPA- 121

Query: 117 DQGSLEWGRAHWRSLKNSG 135
           ++      R  ++ L+  G
Sbjct: 122 EEQQKALARERYKQLRQLG 140


>gi|293390453|ref|ZP_06634787.1| DNA polymerase III subunit chi [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950987|gb|EFE01106.1| DNA polymerase III subunit chi [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 149

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 11  NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70
           +  E     L    +  GKRV + C +E    +++E LW  + D F+PH +        +
Sbjct: 21  SAVESLACNLAASAWRLGKRVLLACENEAQALNIDEALWQREPDEFVPHNLSGEA---TT 77

Query: 71  SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130
              P+ ++ +    N  +   L++        ++ + +++  +   ++      R  ++ 
Sbjct: 78  YATPIEISWTGKR-NAQSRDLLINLQPQLPEFINSFNQIIDFVPA-EEQQKALARERYKQ 135

Query: 131 LKNSG 135
           L+  G
Sbjct: 136 LRQLG 140


>gi|145634291|ref|ZP_01790001.1| DNA polymerase III subunit chi [Haemophilus influenzae PittAA]
 gi|145268271|gb|EDK08265.1| DNA polymerase III subunit chi [Haemophilus influenzae PittAA]
          Length = 144

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +   D    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQHRDLLINLQQEIPDFSHSFTQIIDFVPK-DNALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|148825936|ref|YP_001290689.1| DNA polymerase III subunit chi [Haemophilus influenzae PittEE]
 gi|148716096|gb|ABQ98306.1| DNA polymerase III subunit chi [Haemophilus influenzae PittEE]
          Length = 144

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDEILWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQLIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|307129161|ref|YP_003881177.1| DNA polymerase III, subunit chi [Dickeya dadantii 3937]
 gi|306526690|gb|ADM96620.1| DNA polymerase III, chi subunit [Dickeya dadantii 3937]
          Length = 149

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   +D         E     L    +  G+RV + C  E+    L+E LW  +
Sbjct: 1   MKNATFYLIDHDRPSGELNACEALACSLAAARWRAGQRVLIACEDEQQALRLDEALWQRE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N    R L+        D       V  
Sbjct: 61  PHEFVPHNLAGEGPRQGA---PVELAWPQKRGNAP--RDLLISLQPQFADFATAFHEVID 115

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
               ++   +  R  +++ ++ G+
Sbjct: 116 FVPYEESLKQLARDRYKAYRSVGF 139


>gi|116748664|ref|YP_845351.1| DNA polymerase III subunit chi [Syntrophobacter fumaroxidans MPOB]
 gi|116697728|gb|ABK16916.1| DNA polymerase III chi subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 152

 Score = 70.2 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 17  LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76
           L  +++  YE G++V V   S      +++ LWT+    F+PH +     G     +PV+
Sbjct: 20  LCNIVEHFYEAGRKVQVVADSTLGAQHIDQMLWTFSDRSFVPHRILDPGRGTP--LEPVV 77

Query: 77  LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           +T+     +         +A   +  +  +E  V  +  DD       R  W   ++   
Sbjct: 78  ITVGERILDGFDTVVC--DAECRLDFMTAFETAVHFVIRDDVDRRLQSRRMWTEARDRAL 135

Query: 137 A 137
           A
Sbjct: 136 A 136


>gi|229844141|ref|ZP_04464282.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1]
 gi|229813135|gb|EEP48823.1| DNA polymerase III subunit chi [Haemophilus influenzae 6P18H1]
          Length = 144

 Score = 70.2 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWHSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQHRDLLINLQQEIPDFSHSFTQIIDFVPKDD-ALK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|145636109|ref|ZP_01791779.1| DNA polymerase III subunit chi [Haemophilus influenzae PittHH]
 gi|145270631|gb|EDK10564.1| DNA polymerase III subunit chi [Haemophilus influenzae PittHH]
          Length = 144

 Score = 70.2 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW    + F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPNEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-VLK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|51474041|ref|YP_067798.1| DNA polymerase III subunit chi [Rickettsia typhi str. Wilmington]
 gi|51460353|gb|AAU04316.1| probable DNA-directed DNA polymerase III chi subunit HolC
           [Rickettsia typhi str. Wilmington]
          Length = 154

 Score = 70.2 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 22  QDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           +  Y    +  +       ++ LN+ LWT+ +  F+PHG          + QP+ +T   
Sbjct: 23  EKCYYSDLKSVILTTDVDQQEMLNKNLWTYSRKQFIPHGSKF---DPQPTKQPIYITDEL 79

Query: 82  LNANTSTIRFLVDEASMH-----IGDVDYYEKVVFIIN 114
            N N +++  ++    +         +  +++++ I +
Sbjct: 80  QNPNNASVLIIISPTDIEKILQVKEYIRVFKRIIIITD 117


>gi|85060088|ref|YP_455790.1| DNA polymerase III subunit chi [Sodalis glossinidius str.
           'morsitans']
 gi|84780608|dbj|BAE75385.1| DNA polymerase III chi subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 149

 Score = 70.2 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKN--------DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY              E     L  D++ +GKRV + C  +     L+E LW   
Sbjct: 1   MKNATFYLLDQHAISDGLTAVERLACDLAADKWRQGKRVLITCEDDAQALRLDEALWERD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV +       N      L+            + +V+  
Sbjct: 61  PHAFVPHNLAGEGPRYGA---PVEICWPQRRCNAPRDL-LISLLPACADFASAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +  +D    +  R  +++ ++ G+
Sbjct: 117 VPDED-TLKQLARDRYKAYRSVGF 139


>gi|145641423|ref|ZP_01797002.1| DNA polymerase III subunit chi [Haemophilus influenzae R3021]
 gi|145273966|gb|EDK13833.1| DNA polymerase III subunit chi [Haemophilus influenzae 22.4-21]
          Length = 144

 Score = 70.2 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 6   FYRFKN----DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGV 61
           FY          E     L    +  GK+V + C SE     ++E LW      F+PH +
Sbjct: 7   FYILTENCTLTVEEIACNLAASIWRSGKKVLISCESESQALEIDELLWQRDPSEFVPHNL 66

Query: 62  DVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSL 121
                   +   P+ ++      N      L++           + +++  +  DD    
Sbjct: 67  SGEATQYPT---PIEISWLGKR-NLQRRDVLINLQQEIPDFSHSFTQIIDFVPKDD-VLK 121

Query: 122 EWGRAHWRSLKNSG 135
              R  ++ L+  G
Sbjct: 122 TQARERYKQLRLQG 135


>gi|297537472|ref|YP_003673241.1| DNA polymerase III chi subunit HolC [Methylotenera sp. 301]
 gi|297256819|gb|ADI28664.1| DNA polymerase III chi subunit HolC [Methylotenera sp. 301]
          Length = 140

 Score = 70.2 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 1   MRTLLFY-----RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDG 55
           M  + FY     +F    E     L +    KG+++++   ++ +   +   LW+     
Sbjct: 1   MTRVEFYFNVPDKFAKTVE-----LCEKALAKGRQLTIYTQNDAMSSEMQNLLWSHSASS 55

Query: 56  FLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           FL    +       S F P+++     N     +  L++  +        +  +V ++  
Sbjct: 56  FLA---NSHVNEAHSQFSPIVIDAQGENLLQDDV--LINLQTAQPLFFSRFRYLVELV-G 109

Query: 116 DDQGSLEWGRAHWRSLKNSGY 136
            D+      R  +R  K+ GY
Sbjct: 110 SDEADKAAARVRFRFYKDRGY 130


>gi|221133508|ref|ZP_03559813.1| DNA polymerase III chi subunit [Glaciecola sp. HTCC2999]
          Length = 151

 Score = 70.2 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 1   MRTLLFYRFK---------NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51
           M    FY+           +        L+   Y + KR++V C  +   ++ ++ LW  
Sbjct: 1   MTQANFYQLTEQDGTGFDASSIAVLACDLVARCYGEKKRLTVLCTDQAQAEAFSDLLWQH 60

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR-FLVDEASMHIGDVDYYEKVV 110
             + F+ H +        ++   V +T      N S IR  +V+ A++ I + + Y  + 
Sbjct: 61  PPERFIAHNIAGEGPHGGAA---VEVTWG----NQSPIRSIVVNVAALQIPNPERYHTIY 113

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSGY 136
             +   +   +   R  +   K +G 
Sbjct: 114 DFVPVAEADKI-RARQRYAFFKRAGC 138


>gi|296315186|ref|ZP_06865127.1| DNA polymerase III, chi subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296837911|gb|EFH21849.1| DNA polymerase III, chi subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 146

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY            L+      G R+ V   S      L++ LW ++ + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTIS---SLNANTSTIRFLVDE----ASMHIGDVDYYEKVVFII 113
           +   +E    S   VLL              +  L D     A +         +V+ I+
Sbjct: 61  IWETEEA-MPSETSVLLACGGNLPRIPEGMAVLNLSDSFWNTAPVLPA------RVLEIV 113

Query: 114 NTDDQGSLEWGRAHWRSLKNSGYAPD 139
             +    L   R  + + + SG+A +
Sbjct: 114 -GNSLEDLADARERFAAYRRSGFAIE 138


>gi|119471265|ref|ZP_01613768.1| DNA polymerase III, chi subunit [Alteromonadales bacterium TW-7]
 gi|119445731|gb|EAW27014.1| DNA polymerase III, chi subunit [Alteromonadales bacterium TW-7]
          Length = 148

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           Y  G+RV +         +++E +W +  D F+PH +        +   PV + I+    
Sbjct: 35  YRNGQRVFICVNDNDTACAIDEIIWAFDPDSFVPHNLQGEGPKGGA---PVEIGITPPVG 91

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           N    + L++ A+     +  + +V   +   +  + +  R  ++ L+  G
Sbjct: 92  NR---KVLINLATQLPDYIRRFNQVFDFVPV-EPVAKQAARERFKKLRQLG 138


>gi|255320993|ref|ZP_05362166.1| DNA polymerase III, chi subunit [Acinetobacter radioresistens SK82]
 gi|262379917|ref|ZP_06073072.1| DNA polymerase III chi subunit [Acinetobacter radioresistens SH164]
 gi|255301957|gb|EET81201.1| DNA polymerase III, chi subunit [Acinetobacter radioresistens SK82]
 gi|262298111|gb|EEY86025.1| DNA polymerase III chi subunit [Acinetobacter radioresistens SH164]
          Length = 135

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    +  R+ + C    +   L+E LW++    F+
Sbjct: 1   MAKVSFYLFEKSQERQVESACRLCRKILRQPARIWLYCPDPSMLQQLDEALWSFDTASFI 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV-DEASMHIGDVDYYEKVVFIINTD 116
            HG+D  +           + IS+     + + +LV + +   +G V+ +  ++ II  +
Sbjct: 61  GHGIDQVNAS---------VCISAELP--AELDWLVFNFSDKALGPVEKFGHIIEIIE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  +++ +  G  P
Sbjct: 109 NETAKQTGREKYKTYRQLGIQP 130


>gi|293393095|ref|ZP_06637410.1| DNA-directed DNA polymerase III chi subunit [Serratia odorifera DSM
           4582]
 gi|291424241|gb|EFE97455.1| DNA-directed DNA polymerase III chi subunit [Serratia odorifera DSM
           4582]
          Length = 150

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 13/139 (9%)

Query: 6   FYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           FY  + D         E     +  + +  GKRV + C ++     L+E LW      F+
Sbjct: 7   FYLLETDQPVGALSAHEAVACDVAANGFRAGKRVLIACENQEQAQRLDEALWQRDPHQFV 66

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PH +    EG      PV L   +   N      L+            + +VV  +   +
Sbjct: 67  PHNLAG--EGPHYGA-PVELCWPAKRGNAPRDL-LIALLPQFADFATAFHEVVDFVP-YE 121

Query: 118 QGSLEWGRAHWRSLKNSGY 136
           +   +  R  +++ ++ G+
Sbjct: 122 ETLKQLARDRYKAYRSVGF 140


>gi|238897459|ref|YP_002923136.1| DNA polymerase III, chi subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465214|gb|ACQ66988.1| DNA polymerase III, chi subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 150

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 1   MRTLLFYRFKN-------DWEYNL-LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++         E  L   L    +  GK++ + C  +     L++ LW + 
Sbjct: 1   MKRATFYLMEHGDPIHGLSPEETLTCELSAQHWRAGKKIQILCEEKAQAVRLDDALWLYP 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVL---LTISSLNANTSTIRFLVDEASMHIGDVDYYEKV 109
            D F+PH +        +  + +    L+  S +        L++  S  I  V  + ++
Sbjct: 61  PDAFIPHHLSGEGPKQGAPVEMIWPDCLSHHSAD-------LLINLLSECIDFVGRFTEI 113

Query: 110 VFIINTDDQGSLEWGRAHWRSLKNSGY 136
           +  +   +    +  RA +   +  G+
Sbjct: 114 IDFVP-YETTLKQLARARYAYYRQLGF 139


>gi|262274981|ref|ZP_06052792.1| DNA polymerase III chi subunit [Grimontia hollisae CIP 101886]
 gi|262221544|gb|EEY72858.1| DNA polymerase III chi subunit [Grimontia hollisae CIP 101886]
          Length = 151

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 12/137 (8%)

Query: 6   FYRFKNDWEYNLLVLLQD-----EY--EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58
           FY          L +L+          ++G +V +    +   ++++E LW    +GF+P
Sbjct: 7   FYLLDESHNNPSLRMLEKVCQLSALFCQQGMKVFITAADKPQAEAIDEALWQQPAEGFVP 66

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           H +    EG     Q V +    +  ++     L++ A         + +VV  +  +D 
Sbjct: 67  HNLVG--EGPRGGAQ-VEIGWPGVR-HSGHRHVLINLAQEAATFAPSFAQVVDFVPCED- 121

Query: 119 GSLEWGRAHWRSLKNSG 135
              +  R  ++  + +G
Sbjct: 122 ALKQQARERYKIYRMAG 138


>gi|261855976|ref|YP_003263259.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus
           c2]
 gi|261836445|gb|ACX96212.1| DNA polymerase III chi subunit HolC [Halothiobacillus neapolitanus
           c2]
          Length = 147

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 1   MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  ++F+   +            L     +    V V C +    +S ++YLW +K D F
Sbjct: 1   MSAVIFHLIDDPDTEAFWFHAAELCAQAAQAEHMVYVVCANLAHVESFDDYLWGYKPDAF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH      + +  +  P+ L +           ++++ +   I  V    ++  +++ +
Sbjct: 61  VPH----TADPEDIAHAPIFLGVDVA---AGGFDYVINLSGKPIERVADRIQLDELVDAN 113

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
              + E  RA WR  + +G  P
Sbjct: 114 -PANREAARARWRDYQAAGVKP 134


>gi|52425612|ref|YP_088749.1| DNA polymerase III subunit chi [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307664|gb|AAU38164.1| HolC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 147

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 6   FYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           FY  +           E     L  D +  GK+V + C +E    +L+E LW    + F+
Sbjct: 7   FYLIEKTQADNALSATEALACNLAADAWRLGKKVLIACETEEQALNLDEALWQRDAEQFV 66

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
           PH +        +   P+ ++      N      L+   +        +  V+  +   +
Sbjct: 67  PHNLS---GEITNYATPIEISWQGKR-NAQRRDLLISLQNNVPDYAQSFNHVIDFVPA-E 121

Query: 118 QGSLEWGRAHWRSLKNSGYA 137
           +      R  ++  +  G+ 
Sbjct: 122 EERKAVARERYKLYRQLGFE 141


>gi|90411868|ref|ZP_01219876.1| DNA polymerase III, chi subunit [Photobacterium profundum 3TCK]
 gi|90327126|gb|EAS43498.1| DNA polymerase III, chi subunit [Photobacterium profundum 3TCK]
          Length = 150

 Score = 68.2 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 13/143 (9%)

Query: 1   MRTLLFY-----RFKNDWEYNL---LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY       + D +Y L          Y++G +V +   ++   + L+EYLW  +
Sbjct: 1   MTHATFYIIEDKHLEADSDYLLHFSCHQAALSYQQGNKVYLLAENKAQAEQLDEYLWQQE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D F+PH +        S   PV +       ++     L++           + +V+  
Sbjct: 61  PDNFVPHNLIGEGPRGGS---PVEIGW-PGLRHSGRRGLLINLGQDTPNFAVTFPQVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSG 135
           +   D+   +  R  +++ + +G
Sbjct: 117 VPC-DENLKQLARERYKAYRLAG 138


>gi|160871770|ref|ZP_02061902.1| DNA polymerase III, chi subunit [Rickettsiella grylli]
 gi|159120569|gb|EDP45907.1| DNA polymerase III, chi subunit [Rickettsiella grylli]
          Length = 146

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 2   RTLLFYRFKNDWEYNL----LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
            T+ FY     ++ +       L+   + + K++ +Q  +       +E LWT++   F+
Sbjct: 4   TTIDFYLLNTVFQEDRYRFSCRLIDKAFLQHKKIFIQVNTAEEGQRFDELLWTFRDISFI 63

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTS---TIRFLVDEASMHIGDVDYYEKVVFIIN 114
           PH     D          LLT+  +  N         L++ ++        + +++ +++
Sbjct: 64  PHRYLEVDSSIDP-----LLTV-HIAVNKPVELHADILLNLSTRVPDYFSTFSRIIEVVS 117

Query: 115 TDDQGSLEWGRAHWRSLKNSGY 136
            +++      R  ++  K    
Sbjct: 118 EENENK-NQSRQKYKFYKTQQC 138


>gi|284007684|emb|CBA73424.1| DNA polymerase III subunit chi [Arsenophonus nasoniae]
          Length = 149

 Score = 68.2 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  +                 L  + +  GKRV + C  +   + L+E LW  +
Sbjct: 1   MKKATFYLIEQLSSQAELESHEWLACQLAAENWRMGKRVLIACEDQIQAEKLDEILWQRE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L   +   +++    L++  S        + +V+  
Sbjct: 61  PYQFVPHNLAGEGPRYGA---PVELCWPTKRGSSAR-DILINLQSTFADFATTFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           + T D+   +  R  +++ +N G+ 
Sbjct: 117 VPT-DEHLKQLARERYKTYRNMGFN 140


>gi|197287275|ref|YP_002153147.1| DNA polymerase III subunit chi [Proteus mirabilis HI4320]
 gi|227357025|ref|ZP_03841396.1| DNA polymerase III, chi subunit [Proteus mirabilis ATCC 29906]
 gi|194684762|emb|CAR46789.1| DNA polymerase III, chi subunit [Proteus mirabilis HI4320]
 gi|227162828|gb|EEI47788.1| DNA polymerase III, chi subunit [Proteus mirabilis ATCC 29906]
          Length = 149

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++          E+    L  + +  GKRV + C S+   + L+E LW  +
Sbjct: 1   MKNATFYLMEHPSIHQDLQAHEWLACQLAAEHWRLGKRVLLVCDSQPQAELLDEALWARE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L++  S        + +V+  
Sbjct: 61  PHQFVPHNLAGEGPRYGA---PVELCWPGKRGNAPRDL-LINLQSQFADFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  ++  ++ G+ 
Sbjct: 117 VPI-DEQLKQLARERYKIYRSVGFT 140


>gi|62511383|gb|AAX84280.1| HolC [Xylella fastidiosa]
 gi|62511385|gb|AAX84281.1| HolC [Xylella fastidiosa]
 gi|62511387|gb|AAX84282.1| HolC [Xylella fastidiosa]
 gi|62511389|gb|AAX84283.1| HolC [Xylella fastidiosa]
 gi|62511391|gb|AAX84284.1| HolC [Xylella fastidiosa]
 gi|62511393|gb|AAX84285.1| HolC [Xylella fastidiosa]
          Length = 114

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 11  NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70
                 +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D  
Sbjct: 1   KKPLQLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD-- 58

Query: 71  SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130
              PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W+ 
Sbjct: 59  DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWKH 113

Query: 131 L 131
            
Sbjct: 114 Y 114


>gi|303257375|ref|ZP_07343389.1| DNA polymerase III, chi subunit [Burkholderiales bacterium 1_1_47]
 gi|302860866|gb|EFL83943.1| DNA polymerase III, chi subunit [Burkholderiales bacterium 1_1_47]
          Length = 158

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  L F+    +      + ++          V   ++      +  LW ++   F+PHG
Sbjct: 17  MSDLAFHTGVENRFKYACLAMRKAQRLNVSACVLLETDDELRRFDNMLWAFEPTSFIPHG 76

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLV-DEASMHI-GDVDYYEKVVFIINTDDQ 118
                +        V L+  + +   + +  L+   A +     ++ + K++ I+   D 
Sbjct: 77  RPNTLDMQRGG---VALSTHAADLPDAELLVLLTHGAPIDTKALMERFPKIIDIV-GRDD 132

Query: 119 GSLEWGRAHWRSLKNSGYAPDVI 141
             L  GR  + + K  G  P V+
Sbjct: 133 PELTEGRHRYVAYKRQGIEPTVV 155


>gi|198283965|ref|YP_002220286.1| DNA polymerase III subunit chi HolC [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665282|ref|YP_002426601.1| DNA polymerase III, chi subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248486|gb|ACH84079.1| DNA polymerase III chi subunit HolC [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517495|gb|ACK78081.1| DNA polymerase III, chi subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 141

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 16/146 (10%)

Query: 1   MRTLLFYRFKNDWEYN------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKD 54
           M    FY               +  ++   ++      + C       +L++ LWT++  
Sbjct: 1   MPVASFYTLPPTLLTAHEQRRGMCRVIAKVWQVMGEADILCPDTEAGQTLDDLLWTFQAG 60

Query: 55  GFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
            F+PH    G        +PV +  +           L          +   E+++  I 
Sbjct: 61  AFVPHARGAG--------EPVRIHENGAWPLQGKALVLC-GLDKLPAPLPPCERLIDFIP 111

Query: 115 TDDQGSLEWGRAHWRSLKNSGYAPDV 140
              +    + R  +R LKN+G+   V
Sbjct: 112 VA-EQLRGFARERYRQLKNAGFTMQV 136


>gi|299771882|ref|YP_003733908.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           sp. DR1]
 gi|298701970|gb|ADI92535.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           sp. DR1]
          Length = 135

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +   +K  ++   C   +++  L+E LW +    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDMQLQQMLDERLWEFDPVSFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HGVD  D     S+ QP+   +   N N              +  VD++  ++ I+  +
Sbjct: 61  AHGVDQTDAAVCISAKQPLEQGLLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130


>gi|322834558|ref|YP_004214585.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
 gi|321169759|gb|ADW75458.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
          Length = 161

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKND-------WEYNLLVLLQ-DEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   F+                L  L+  + Y  GKRV + C  ++  + L+E LW  +
Sbjct: 1   MKQATFFLLDAPDASGELSSHEALACLVAAERYRMGKRVLLACEDQKQAERLDEALWQRE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + F+PH +        +   PV L       N      L+            + +VV  
Sbjct: 61  PNHFVPHNLAGEGPRFGA---PVELCWPGKRGNAPRDL-LISLLPEFADFATAFHEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   +    +  R  +++ ++ G++
Sbjct: 117 VP-YEDSLKQLARERYKAYRSVGFS 140


>gi|293610037|ref|ZP_06692338.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827269|gb|EFF85633.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 135

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +   +K  ++   C   +++ +L+E LW +    F+
Sbjct: 1   MAKVNFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDVQLQQTLDERLWDFDPASFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HG+D  +     S+ QP+   +   N N              +  VD++  ++ I+  +
Sbjct: 61  AHGIDQAEAAVCISAKQPLEQGLLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130


>gi|270265130|ref|ZP_06193393.1| DNA polymerase III, chi subunit [Serratia odorifera 4Rx13]
 gi|270041064|gb|EFA14165.1| DNA polymerase III, chi subunit [Serratia odorifera 4Rx13]
          Length = 150

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GKRV + C S+     L+E LW      F+PH +    EG      PV L       
Sbjct: 34  WRSGKRVLIACESQEQAQRLDEALWQRDPHQFVPHNLAG--EGPHYGA-PVELCWPGKRG 90

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           N+     L+            + +VV  +   +    +  R  +++ ++ G+
Sbjct: 91  NSPRDL-LIALLPQFADFATAFHEVVDFVP-YEDTLKQLARDRYKAYRSVGF 140


>gi|62511401|gb|AAX84289.1| HolC [Xylella fastidiosa]
          Length = 114

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 10  KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDF 69
           +      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D 
Sbjct: 1   EKPL-QLVCELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD- 58

Query: 70  SSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129
               PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W+
Sbjct: 59  -DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWK 112

Query: 130 SL 131
             
Sbjct: 113 HY 114


>gi|85713128|ref|ZP_01044161.1| DNA polymerase III chi subunit [Idiomarina baltica OS145]
 gi|85693044|gb|EAQ31009.1| DNA polymerase III chi subunit [Idiomarina baltica OS145]
          Length = 148

 Score = 67.1 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYE----KGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M +  F+  +   E     L+ D+      + +++ V C  ++  +  +E LW    DGF
Sbjct: 1   MPSATFFLVQTTDEDEKNNLICDKIADLFRQYRKLLVVCEDQQQAELFDELLWQRPADGF 60

Query: 57  LPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
           +PH +         +  PV L+         T   L + AS         + +  ++   
Sbjct: 61  IPHALVGEA---LPNGAPVTLSWRQSEQQPRTGMALFNLASQVPEIAQRSQHIFDLVPA- 116

Query: 117 DQGSLEWGRAHWRSLKNSGY 136
            +      R  ++  +  G 
Sbjct: 117 PEDEKAVARERYKHYRARGC 136


>gi|157368806|ref|YP_001476795.1| DNA polymerase III subunit chi [Serratia proteamaculans 568]
 gi|157320570|gb|ABV39667.1| DNA-directed DNA polymerase [Serratia proteamaculans 568]
          Length = 149

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GKRV + C S+     L+E LW      F+PH +    EG      PV L       
Sbjct: 33  WRSGKRVLIACESQEQAQRLDEALWQRDPHQFVPHNLAG--EGPHYGA-PVELCWPGKRG 89

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           N+     L+            + +VV  +   +    +  R  +++ ++ G+
Sbjct: 90  NSPRDL-LIALLPQFADFATAFHEVVDFVP-YEDTLKQLARDRYKAYRSVGF 139


>gi|285019434|ref|YP_003377145.1| DNA polymerase III subunit chi protein [Xanthomonas albilineans GPE
           PC73]
 gi|283474652|emb|CBA17151.1| probable dna polymerase III subunit chi protein [Xanthomonas
           albilineans]
          Length = 140

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 6   FYRFKNDWEYNLL-----VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           FY                 L +   +      V        + L+E LW +  D ++PH 
Sbjct: 5   FYLIAKPRFLTAPLRLVCELARKANDANLWTLVLARDLAQAEELDELLWAFDDDAYIPHQ 64

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           +   D  +  +   VL+    +    +  R LV         +   E+V+ ++   D  +
Sbjct: 65  IAGADADEEEAQ--VLIAPPEV---DAASRPLVINLR-DAPYLGTCERVLEVVPA-DLSA 117

Query: 121 LEWGRAHWRSLKNSGYA 137
            E  R  W+  K  GYA
Sbjct: 118 REPLRERWKQYKTQGYA 134


>gi|226329631|ref|ZP_03805149.1| hypothetical protein PROPEN_03541 [Proteus penneri ATCC 35198]
 gi|225202817|gb|EEG85171.1| hypothetical protein PROPEN_03541 [Proteus penneri ATCC 35198]
          Length = 149

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 1   MRTLLFYRFKNDW--------EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  ++          E+    L  + +  GKR+ + C S+   + L+E LW  +
Sbjct: 1   MKNATFYLMEHPSIHDDLQAHEWLACQLTAEHWRLGKRILLVCESQAQAELLDEALWARE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +        +   PV L       N      L++  S  +     + +V+  
Sbjct: 61  PHQFVPHNLAGEGPRYGA---PVELCWPGKRGNAPRDL-LINLQSQFVDFATAFHEVIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   D+   +  R  ++  ++ G+ 
Sbjct: 117 VPI-DEQLKQLARERYKIYRSVGFT 140


>gi|297621270|ref|YP_003709407.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU 86-1044]
 gi|297376571|gb|ADI38401.1| DNA polymerase III, chi subunit [Waddlia chondrophila WSU 86-1044]
          Length = 142

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           RV +   SE     L+++LW   K+GFLPH V      D      +++T    N N + I
Sbjct: 36  RVLITVPSETAATYLDDFLWKQPKEGFLPHSVSTQACSDE-----IVITTKQENLNQAEI 90

Query: 90  RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
             L++  S        ++ V  + +  +    E     +++ + SG
Sbjct: 91  --LINLCSEFSPIAGQFKTVFELWDETNALRREQSEKKFKAYEASG 134


>gi|325124202|gb|ADY83725.1| DNA polymerase III, chi subunit [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 135

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +   +K  ++   C   +++ +L+E LW +    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCPDVQLQQTLDERLWDFDPASFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HG+D  +     S+ QP+   +   N N              +  VD++  ++ I+  +
Sbjct: 61  AHGIDQAEAAVCISAKQPLEQGLLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130


>gi|62511395|gb|AAX84286.1| HolC [Xylella fastidiosa]
 gi|62511397|gb|AAX84287.1| HolC [Xylella fastidiosa]
 gi|62511399|gb|AAX84288.1| HolC [Xylella fastidiosa]
 gi|62511405|gb|AAX84291.1| HolC [Xylella fastidiosa]
 gi|62511407|gb|AAX84292.1| HolC [Xylella fastidiosa]
 gi|62511409|gb|AAX84293.1| HolC [Xylella fastidiosa]
 gi|62511411|gb|AAX84294.1| HolC [Xylella fastidiosa]
 gi|62511413|gb|AAX84295.1| HolC [Xylella fastidiosa]
          Length = 114

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 10  KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDF 69
           +      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D 
Sbjct: 1   EKPL-QLVCELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD- 58

Query: 70  SSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129
               PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W+
Sbjct: 59  -DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWK 112

Query: 130 SL 131
             
Sbjct: 113 HY 114


>gi|62511403|gb|AAX84290.1| HolC [Xylella fastidiosa]
          Length = 107

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 18  LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77
             L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D     PVL+
Sbjct: 1   CELVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD--DITPVLI 58

Query: 78  TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSL 131
                +  +   R LV        D    E+V+ ++   D  + E  R  W+  
Sbjct: 59  ATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWKHY 107


>gi|169634644|ref|YP_001708380.1| DNA polymerase III, chi subunit [Acinetobacter baumannii SDF]
 gi|169153436|emb|CAP02578.1| DNA polymerase III, chi subunit [Acinetobacter baumannii]
          Length = 135

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    K  ++   C   +++ +L+E LW++    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPTSFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HGVD  D     S+ QP        N N              +  V+++  ++ I+  +
Sbjct: 61  AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HTLEQVNHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130


>gi|329295901|ref|ZP_08253237.1| DNA polymerase III subunit chi [Plautia stali symbiont]
          Length = 152

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 11  NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS 70
           +  E  +  L    +  GKR+ + C  E+  + L+E LW    + F+PH +        +
Sbjct: 19  SAIEALVCDLAASRWRDGKRILIACEDEQQANRLDEALWQRPANAFVPHNLAGEGPRYGA 78

Query: 71  SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130
              PV L        ++    L+            + +V+    + ++   +  R  +++
Sbjct: 79  ---PVELAWPQRR-GSAPRDLLISLLPQFADFATGFHEVID-FVSYEESLKQLARDRYKA 133

Query: 131 LKNSGY 136
            ++ G+
Sbjct: 134 YRSVGF 139


>gi|260551092|ref|ZP_05825296.1| DNA polymerase III chi subunit [Acinetobacter sp. RUH2624]
 gi|260405859|gb|EEW99347.1| DNA polymerase III chi subunit [Acinetobacter sp. RUH2624]
          Length = 135

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    K   +   C   +++ +L+E LW++    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILLKHSNIWWYCPDVQLQQTLDEKLWSFDPTSFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HG+D  D     S+ QP        N N              +  V+++  ++ I+  +
Sbjct: 61  AHGIDQADAAVCISAKQPSEQGWLVFNFNN-----------HALEQVNHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130


>gi|239502073|ref|ZP_04661383.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AB900]
          Length = 135

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    K  ++   C   +++ +L+E LW++    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPTSFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HGVD  D     S+ QP        N N              +  VD++  ++ I+  +
Sbjct: 61  AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HALEQVDHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130


>gi|62511365|gb|AAX84271.1| HolC [Xylella fastidiosa]
 gi|62511367|gb|AAX84272.1| HolC [Xylella fastidiosa]
 gi|62511369|gb|AAX84273.1| HolC [Xylella fastidiosa]
 gi|62511371|gb|AAX84274.1| HolC [Xylella fastidiosa]
 gi|62511373|gb|AAX84275.1| HolC [Xylella fastidiosa]
 gi|62511375|gb|AAX84276.1| HolC [Xylella fastidiosa]
 gi|62511377|gb|AAX84277.1| HolC [Xylella fastidiosa]
 gi|62511379|gb|AAX84278.1| HolC [Xylella fastidiosa]
 gi|62511381|gb|AAX84279.1| HolC [Xylella fastidiosa]
          Length = 114

 Score = 65.5 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 10  KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDF 69
           +      +  L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D 
Sbjct: 1   EKPL-QLVCELVRKAYDTHQPTLILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD- 58

Query: 70  SSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWR 129
               PVL+     +  +   R LV        D    E+V+ ++   D  + E  R  W+
Sbjct: 59  -DITPVLIATPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWK 112

Query: 130 SL 131
             
Sbjct: 113 HY 114


>gi|320539291|ref|ZP_08038961.1| putative DNA polymerase III, chi subunit [Serratia symbiotica str.
           Tucson]
 gi|320030683|gb|EFW12692.1| putative DNA polymerase III, chi subunit [Serratia symbiotica str.
           Tucson]
          Length = 150

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 25  YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA 84
           +  GKR+ + C S+     L+E LW  +   F+PH +        +S  PV L       
Sbjct: 34  WRSGKRLLIACESQEQAQRLDEALWQREPHTFVPHNLAGEG---PNSGAPVELCWPGKRG 90

Query: 85  NTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
           N      L+            + +VV  +   +    +  R  +++ ++ G+
Sbjct: 91  NAPRDL-LIALQPQFADFATAFHQVVDFVP-YEDTLKQLARDRYKAYRSVGF 140


>gi|184156571|ref|YP_001844910.1| DNA polymerase III subunit chi [Acinetobacter baumannii ACICU]
 gi|260556397|ref|ZP_05828616.1| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 19606]
 gi|332874945|ref|ZP_08442796.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6014059]
 gi|183208165|gb|ACC55563.1| DNA polymerase III, chi subunit [Acinetobacter baumannii ACICU]
 gi|193076097|gb|ABO10701.2| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 17978]
 gi|260410452|gb|EEX03751.1| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 19606]
 gi|322506458|gb|ADX01912.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 1656-2]
 gi|323516337|gb|ADX90718.1| DNA polymerase III, chi subunit [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736888|gb|EGJ67864.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6014059]
          Length = 135

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    K  ++   C   +++ +L+E LW++    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPTSFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HGVD  D     S+ QP        N N              +  V+++  ++ I+  +
Sbjct: 61  AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HALEQVNHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130


>gi|15602687|ref|NP_245759.1| DNA polymerase III subunit chi [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12721129|gb|AAK02906.1| HolC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 142

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 6   FYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDV 63
           FY    +   E          +  GKRV + C +E+    ++E LW  + D F+PH +  
Sbjct: 7   FYLLSEQAQMEKMACDFAASAWRLGKRVLIACETEQQALDIDEALWAREADEFVPHNLSG 66

Query: 64  GDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEW 123
                 +   P+ ++      N      L++        V  + +V+  +  ++   +  
Sbjct: 67  EV---TTYATPIEVSWKGKR-NAQRRDLLINLQVEVPDYVSSFTQVIDFVPVEEHLKV-L 121

Query: 124 GRAHWRSLKNSG 135
            R  ++ L+  G
Sbjct: 122 ARERYKQLRQLG 133


>gi|282889633|ref|ZP_06298173.1| hypothetical protein pah_c003o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500460|gb|EFB42739.1| hypothetical protein pah_c003o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 151

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           R+ +   +E     LN  LW   ++ FLPH   +  E        V +T S  N N + +
Sbjct: 37  RILIAAPNEEAARYLNALLWKQPEESFLPH---IWSESQTEEC--VAITFSKNNVNQAAV 91

Query: 90  RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
             L++       + D +E++  + +  D    +   +        G 
Sbjct: 92  --LLNLCPSVHFEWDSFEQIYDLFDETDPEKQKASESRHVYYTEKGC 136


>gi|294637817|ref|ZP_06716090.1| DNA polymerase III, chi subunit [Edwardsiella tarda ATCC 23685]
 gi|291089057|gb|EFE21618.1| DNA polymerase III, chi subunit [Edwardsiella tarda ATCC 23685]
          Length = 137

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 12  DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS 71
           D E     L    +  GKRV + C S+   + L+E LW      F+PH +        + 
Sbjct: 8   DVETLACELACQHWRAGKRVLLACASQAQAERLDEALWARDPQQFVPHNLAGEGPRFGA- 66

Query: 72  FQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSL 131
             PV L+       ++    L+            + +V+  +   +    +  R  +++ 
Sbjct: 67  --PVELSW-PGKRGSAPRELLISLLPDFADFATAFHEVIDFVP-YEDALKQLARERYKAY 122

Query: 132 KNSGY 136
           ++ G+
Sbjct: 123 RSVGF 127


>gi|261364475|ref|ZP_05977358.1| DNA polymerase III, chi subunit [Neisseria mucosa ATCC 25996]
 gi|288567403|gb|EFC88963.1| DNA polymerase III, chi subunit [Neisseria mucosa ATCC 25996]
          Length = 146

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M    FY    D       L+      G ++ V          L+  LW    + F+PH 
Sbjct: 1   MPKATFYTHAADPAAFACRLIARAIRDGGQILVWSDFAETIRRLDRDLWQQIPESFIPHE 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY-EKVVFIINTDDQG 119
           +   D+   SS   V L              +++ +     +      +V+ I+      
Sbjct: 61  IWQPDQ-PMSSETLVWLAFGDTLPVVPENTTVLNLSPDFWNEAPVIPARVLEIV-GSSLE 118

Query: 120 SLEWGRAHWRSLKNSGYAPD 139
            L   R  + + K SG++ +
Sbjct: 119 ELADARERFSAYKKSGFSIE 138


>gi|262280661|ref|ZP_06058444.1| DNA polymerase III chi subunit [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257561|gb|EEY76296.1| DNA polymerase III chi subunit [Acinetobacter calcoaceticus
           RUH2202]
          Length = 135

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +   +K  ++   C   +++  L+E LW +    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILQKHPKIWWYCQDVQLQQMLDERLWDFDPVSFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HGVD  D     S+ QP+   +   N N              +  VD++  ++ I+  +
Sbjct: 61  AHGVDQTDAAVCISAKQPLEQGLLVFNFNN-----------HALDQVDHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NETAKQIGREKFKMYRRLGIEP 130


>gi|62361810|gb|AAX81441.1| HolC [Xylella fastidiosa]
          Length = 106

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 19  VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
            L++  Y+  +   +    +   ++L++ LW +  D ++PH +   DE D     PVL+ 
Sbjct: 1   ELVRKAYDTHQPALILARDQAQAEALDDLLWAFDPDAYIPHQIAGSDEDD--DITPVLIA 58

Query: 79  ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSL 131
               +  +   R LV        D    E+V+ ++   D  + E  R  W+  
Sbjct: 59  TPDSDTPS---RPLVINLRDAPWD-GPCERVLEVVPA-DPAAREPLRERWKHY 106


>gi|169797505|ref|YP_001715298.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AYE]
 gi|213155681|ref|YP_002317726.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AB0057]
 gi|215484940|ref|YP_002327181.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           baumannii AB307-0294]
 gi|301346209|ref|ZP_07226950.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           baumannii AB056]
 gi|301512958|ref|ZP_07238195.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           baumannii AB058]
 gi|301595089|ref|ZP_07240097.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           baumannii AB059]
 gi|332851505|ref|ZP_08433502.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013150]
 gi|332866795|ref|ZP_08437199.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013113]
 gi|169150432|emb|CAM88329.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AYE]
 gi|213054841|gb|ACJ39743.1| DNA polymerase III, chi subunit [Acinetobacter baumannii AB0057]
 gi|213988348|gb|ACJ58647.1| DNA polymerase III chi subunit, HolC family protein [Acinetobacter
           baumannii AB307-0294]
 gi|332729958|gb|EGJ61289.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013150]
 gi|332734403|gb|EGJ65523.1| DNA polymerase III, chi subunit [Acinetobacter baumannii 6013113]
          Length = 135

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +    K  ++   C   +++ +L+E LW++    F+
Sbjct: 1   MAKVSFYLFETSEERQVDSACRLCRKILLKHSQIWWYCPDVQLQQTLDEKLWSFDPISFI 60

Query: 58  PHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTD 116
            HGVD  D     S+ QP        N N              +  V+++  ++ I+  +
Sbjct: 61  AHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HALEQVNHFSHIIEIVE-N 108

Query: 117 DQGSLEWGRAHWRSLKNSGYAP 138
           ++ + + GR  ++  +  G  P
Sbjct: 109 NEAAKQIGREKFKMYRRLGIEP 130


>gi|121611820|ref|YP_999627.1| DNA polymerase III chi subunit, HolC [Verminephrobacter eiseniae
           EF01-2]
 gi|121556460|gb|ABM60609.1| DNA polymerase III chi subunit, HolC [Verminephrobacter eiseniae
           EF01-2]
          Length = 144

 Score = 62.8 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 4/137 (2%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F  F    +         + ++     V     ++  +L+  LW  +   F+ H 
Sbjct: 1   MTEVAF-HFNAPDKLAYACRFARKVQRSDARLVIAAPAQMLAALDRMLWALEPQDFVAHC 59

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
            D  D+   ++     + ++    +T+    L++         + ++++V +++  D   
Sbjct: 60  RDDADQELLAAS---AVLLAQDARSTAHHEVLLNLQPQVPQGFERFDRLVEVVSAQDPAD 116

Query: 121 LEWGRAHWRSLKNSGYA 137
               RA WR   + G A
Sbjct: 117 RTEARARWRHYASLGLA 133


>gi|90408706|ref|ZP_01216855.1| DNA polymerase III, chi subunit [Psychromonas sp. CNPT3]
 gi|90310188|gb|EAS38324.1| DNA polymerase III, chi subunit [Psychromonas sp. CNPT3]
          Length = 155

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDE-------YEKGKRVSVQCGSERVRDSLNEYLWTWKK 53
           M  + FY    D  +N+   +          Y++  +V +   ++     ++EYLW +  
Sbjct: 1   MSQVTFYILAEDQTHNIPAQIAQACHLAAFYYQQQTKVFIYTENKEDAFIVDEYLWQFDG 60

Query: 54  DGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR-FLVDEASMHIGDVDYYEKVVFI 112
           D F+ H +        S   PV ++          +R  L++ +S        +++++  
Sbjct: 61  DSFVAHNLMGEGPRFGS---PVEISWEPTT----QVRPVLINLSSEVPEFSKNFKQIIDF 113

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYA 137
           +   ++      R  + + K  G+ 
Sbjct: 114 VPV-EETLKMTARRRYSAYKKLGHT 137


>gi|119944174|ref|YP_941854.1| DNA polymerase III chi subunit, HolC [Psychromonas ingrahamii 37]
 gi|119862778|gb|ABM02255.1| DNA polymerase III chi subunit, HolC [Psychromonas ingrahamii 37]
          Length = 160

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 1   MRTLLFYRFKNDWEYN----------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50
           M  ++FY F  + + +             +    Y + K+V +   S+    +++EYLW 
Sbjct: 1   MSQVVFYVFTTEEKSSSVAISAHFAYACRIAAFFYAQNKKVFIYTDSKEDAFAVDEYLWQ 60

Query: 51  WKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110
           +  D F+PH +            PV ++             L++ +         ++K++
Sbjct: 61  FDGDSFVPHNLLGEG---PKFGTPVEISWQVPLHPRP---ILINLSQKTPDFAINFQKII 114

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSG 135
             +   +   +   R  + + +  G
Sbjct: 115 DFVPFPEPQKI-AARIRYSTYRKMG 138


>gi|71891826|ref|YP_277555.1| DNA polymerase III, chi subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795932|gb|AAZ40683.1| DNA polymerase III, chi subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 150

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 14/150 (9%)

Query: 1   MRTLLFYRFKNDWEYN-----LLVLLQDEYEKGKR----VSVQCGSERVRDSLNEYLWTW 51
           M+  +FY    ++E       +  L         R    + V C +E     +++ LWT+
Sbjct: 1   MKRSIFYLLSQEFEQKNRPNYIEQLACKLISTQWRSGKTILVTCENEHQATKIDKILWTF 60

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
            ++ F+PH +     G      P+++  S    +      L++    ++     + +++ 
Sbjct: 61  DQNSFVPHNLF----GKTIQHAPIVIYWSQCCYDNQPKDLLINLMLKNMNFFLNFNEIID 116

Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +   D    +W R  +RS K +G+   V+
Sbjct: 117 FVPISD-ILKKWARYRYRSYKRNGFQVSVV 145


>gi|330938930|gb|EGH42429.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 76

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 1  MRTLLFYRFKNDWEYN----LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
          M  + FY   +            L +  +  G +V + C     R+ L+  LW ++ + F
Sbjct: 1  MTQVDFYILPSADPAARLDFACKLTEKAWRLGHKVYLHCSDAAQREDLDARLWRFRGEVF 60

Query: 57 LPHGVDVGDEGD 68
          LPHG    D   
Sbjct: 61 LPHGDAESDHDA 72


>gi|56461049|ref|YP_156330.1| DNA polymerase III chi subunit [Idiomarina loihiensis L2TR]
 gi|56180059|gb|AAV82781.1| DNA polymerase III chi subunit [Idiomarina loihiensis L2TR]
          Length = 149

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 33  VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA--NTSTIR 90
           V   +++  ++L+E LW    D F+PH +        +   PV       +A  N     
Sbjct: 37  VWARNQQQAEALDELLWQQPSDAFIPHNLHGEGPATGA---PVEFCWPEADAVKNRPG-Y 92

Query: 91  FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
            L + A          +++  I+  DD G  +  R  ++  +  G 
Sbjct: 93  ALFNLAEEIPVQAQQSQQLYDIVPADDNGK-KTARERYKHYRARGC 137


>gi|304311787|ref|YP_003811385.1| DNA polymerase III chi subunit [gamma proteobacterium HdN1]
 gi|301797520|emb|CBL45740.1| DNA polymerase III chi subunit [gamma proteobacterium HdN1]
          Length = 153

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 19  VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLT 78
            L+   Y  G  +     +E      +E LW + ++ FL H +                 
Sbjct: 27  RLIDKVYHLGMSLFTLLPNEEAAAGFSERLWAYSQESFLAHDLGNAQTAARLRVD----W 82

Query: 79  ISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
            +   ++T     L++ A         + +V  I+   D  + E  R ++R+ K  GY 
Sbjct: 83  KALAPSDTVQYDVLINLAGPVPEFHTRFRRVTEIVPG-DTKAREQVRENYRAYKEKGYP 140


>gi|50083530|ref|YP_045040.1| DNA polymerase III chi [Acinetobacter sp. ADP1]
 gi|49529506|emb|CAG67218.1| DNA polymerase III, chi subunit [Acinetobacter sp. ADP1]
          Length = 135

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 14/141 (9%)

Query: 1   MRTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFL 57
           M  + FY F+   E    +   L +   ++ +++   C    ++  L+E LWT+ ++ F+
Sbjct: 1   MTKISFYLFETSQERQVESACRLCRKLVKQQQKLWWFCPDLELQKQLDERLWTFDRESFI 60

Query: 58  PHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
            HG+D          QP      S +  TS    + +  +  +  +  +  ++ II  + 
Sbjct: 61  THGID----------QPHAFVCISSHLPTSKEWIVFNFNNQALEQMSEFSHIIEIIE-NT 109

Query: 118 QGSLEWGRAHWRSLKNSGYAP 138
           + + + GR  ++  +  G  P
Sbjct: 110 ESAKQIGREKFKLYRRLGVEP 130


>gi|258625831|ref|ZP_05720710.1| DNA polymerase III subunit chi [Vibrio mimicus VM603]
 gi|258582069|gb|EEW06939.1| DNA polymerase III subunit chi [Vibrio mimicus VM603]
          Length = 149

 Score = 60.5 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D   +           L +    +G R+ +QC  ++  + L E  W  +
Sbjct: 1   MPTATFYLISPDSAQSTPAGFAQYVLYLTRHFVAQGARIYLQCQDKQHAEQLAERFWQVE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 61  PDQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139


>gi|94677032|ref|YP_588735.1| DNA polymerase III, chi subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94220182|gb|ABF14341.1| DNA polymerase III, chi subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 154

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+ + FYR             E     L+   +  GKR+ + C S      ++  LW   
Sbjct: 1   MKKVTFYRLNKKTIPNWLIAMEQLAYHLVVINWRAGKRILIACESNDQAKKIDHGLWAKT 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+PH +      D +   PV +       N +    +++        +  + +++  
Sbjct: 61  PTAFIPHNLVGEGPKDGA---PVEICW-PHQYNYTPRDLIINLLPKCTDFIFSFNEIIDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           I  D++   +  R  +++ +N G+
Sbjct: 117 IP-DEEFFKQLARNRYKAYRNVGF 139


>gi|229507440|ref|ZP_04396945.1| DNA polymerase III chi subunit [Vibrio cholerae BX 330286]
 gi|229509635|ref|ZP_04399116.1| DNA polymerase III chi subunit [Vibrio cholerae B33]
 gi|229516760|ref|ZP_04406206.1| DNA polymerase III chi subunit [Vibrio cholerae RC9]
 gi|229606946|ref|YP_002877594.1| DNA polymerase III subunit chi [Vibrio cholerae MJ-1236]
 gi|229345823|gb|EEO10795.1| DNA polymerase III chi subunit [Vibrio cholerae RC9]
 gi|229353109|gb|EEO18048.1| DNA polymerase III chi subunit [Vibrio cholerae B33]
 gi|229354945|gb|EEO19866.1| DNA polymerase III chi subunit [Vibrio cholerae BX 330286]
 gi|229369601|gb|ACQ60024.1| DNA polymerase III chi subunit [Vibrio cholerae MJ-1236]
          Length = 154

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEY--------EKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D        L             +G R+ +QC  +   + L E  W  +
Sbjct: 6   MPTATFYLISRDSAQATPEGLAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 65

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 66  PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 121

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 122 VPCA-ENAKQLARERYKLYRQAGY 144


>gi|332976304|gb|EGK13161.1| DNA-directed DNA polymerase III chi subunit [Psychrobacter sp.
           1501(2011)]
          Length = 163

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 32  SVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF-QPV-LLTISSLNANTSTI 89
            +     +    L+ +LW++    F+PH + + +E    +   PV LL+    N +    
Sbjct: 51  VIVDDQTQRLSDLDAHLWSFDATSFVPHTLILDNEPKNEALSAPVTLLSTLPPNFDG--- 107

Query: 90  RFLVDEASMHIGDVDYY---EKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
             +++ A   +         ++V+ II T D+ S + GR  +R  ++ G+ 
Sbjct: 108 -VVLNLAPTALPLSTGNILPDRVLEII-TPDEVSKQQGRDKYRIYRDLGFE 156


>gi|258622806|ref|ZP_05717824.1| DNA polymerase III subunit chi [Vibrio mimicus VM573]
 gi|258584994|gb|EEW09725.1| DNA polymerase III subunit chi [Vibrio mimicus VM573]
          Length = 167

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV-------LLQDEYE-KGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D   +           L   +  +G R+ +QC  ++  + L E  W  +
Sbjct: 19  MPTATFYLISPDSAQSTPTGFAEYVLYLTRHFASQGARIYLQCQDKQHAEQLAERFWQVE 78

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            D FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 79  PDQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 134

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 135 VPCA-ENAKQLARERYKLYRQAGY 157


>gi|15642498|ref|NP_232131.1| DNA polymerase III subunit chi [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591519|ref|ZP_01678784.1| DNA polymerase III, chi subunit [Vibrio cholerae 2740-80]
 gi|153820411|ref|ZP_01973078.1| DNA polymerase III, chi subunit [Vibrio cholerae NCTC 8457]
 gi|153822422|ref|ZP_01975089.1| DNA polymerase III, chi subunit [Vibrio cholerae B33]
 gi|227082621|ref|YP_002811172.1| DNA polymerase III, chi subunit [Vibrio cholerae M66-2]
 gi|254851047|ref|ZP_05240397.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255744519|ref|ZP_05418471.1| DNA polymerase III chi subunit [Vibrio cholera CIRS 101]
 gi|262154657|ref|ZP_06028783.1| DNA polymerase III chi subunit [Vibrio cholerae INDRE 91/1]
 gi|298500667|ref|ZP_07010471.1| DNA polymerase III subunit chi [Vibrio cholerae MAK 757]
 gi|9657084|gb|AAF95644.1| DNA polymerase III, chi subunit [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546627|gb|EAX56817.1| DNA polymerase III, chi subunit [Vibrio cholerae 2740-80]
 gi|126509047|gb|EAZ71641.1| DNA polymerase III, chi subunit [Vibrio cholerae NCTC 8457]
 gi|126520065|gb|EAZ77288.1| DNA polymerase III, chi subunit [Vibrio cholerae B33]
 gi|227010509|gb|ACP06721.1| DNA polymerase III, chi subunit [Vibrio cholerae M66-2]
 gi|254846752|gb|EET25166.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255738044|gb|EET93437.1| DNA polymerase III chi subunit [Vibrio cholera CIRS 101]
 gi|262030497|gb|EEY49135.1| DNA polymerase III chi subunit [Vibrio cholerae INDRE 91/1]
 gi|297540836|gb|EFH76893.1| DNA polymerase III subunit chi [Vibrio cholerae MAK 757]
          Length = 149

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEY--------EKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D        L             +G R+ +QC  +   + L E  W  +
Sbjct: 1   MPTATFYLISRDSAQATPEGLAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 61  PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139


>gi|261211064|ref|ZP_05925353.1| DNA polymerase III chi subunit [Vibrio sp. RC341]
 gi|262401793|ref|ZP_06078358.1| DNA polymerase III chi subunit [Vibrio sp. RC586]
 gi|297581349|ref|ZP_06943272.1| DNA polymerase III subunit chi [Vibrio cholerae RC385]
 gi|260839565|gb|EEX66176.1| DNA polymerase III chi subunit [Vibrio sp. RC341]
 gi|262351765|gb|EEZ00896.1| DNA polymerase III chi subunit [Vibrio sp. RC586]
 gi|297534187|gb|EFH73025.1| DNA polymerase III subunit chi [Vibrio cholerae RC385]
          Length = 149

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D               L +    +G R+ +QC  ++  + L E  W  +
Sbjct: 1   MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKQHAEQLAERFWQIE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 61  PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139


>gi|258544897|ref|ZP_05705131.1| DNA polymerase III, chi subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258519817|gb|EEV88676.1| DNA polymerase III, chi subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 152

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 9   FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
            +N  E     L +   ++  +  + C  E +   L+  LW ++ D FL H         
Sbjct: 21  LENRLELA-CKLAEKAQQERLKTLIICADEHMAAQLDHALWHYRADSFLTH---CRSGDP 76

Query: 69  FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDY-YEKVVFII 113
             +   VLL +       +    L++ +     D+     +V  I+
Sbjct: 77  LEAEAAVLLAVPPERI--ARTDVLINLSQETAPDLPRDCARVFEIV 120


>gi|262170555|ref|ZP_06038233.1| DNA polymerase III chi subunit [Vibrio mimicus MB-451]
 gi|261891631|gb|EEY37617.1| DNA polymerase III chi subunit [Vibrio mimicus MB-451]
          Length = 149

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV-------LLQDEYE-KGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D   +           L   +  +G R+ +QC  ++  + L E  W  +
Sbjct: 1   MPTATFYLISPDSAQSTPTGFAEYVLYLTRHFASQGARIYLQCQDKQHAEQLAERFWQVE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 61  PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139


>gi|269966354|ref|ZP_06180440.1| DNA polymerase III subunit chi [Vibrio alginolyticus 40B]
 gi|269829031|gb|EEZ83279.1| DNA polymerase III subunit chi [Vibrio alginolyticus 40B]
          Length = 150

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  N 
Sbjct: 36  QGAKVYLNCQDKPHAEQLAEAFWQVDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPNW 92

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 93  NRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145


>gi|253997569|ref|YP_003049633.1| DNA polymerase III chi subunit HolC [Methylotenera mobilis JLW8]
 gi|253984248|gb|ACT49106.1| DNA polymerase III chi subunit HolC [Methylotenera mobilis JLW8]
          Length = 140

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F+    D    +  L      K +++++    + +  ++   LW      FLP  
Sbjct: 1   MTRVEFFFNVPDKLAKVAELCDRAVAKRRQLTIFTQDDVMSANVQALLWQHSATSFLPSA 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
                E D      V + +            L++  + H      ++ +V ++   D   
Sbjct: 61  YPGSPEQDD-----VAIIVDKEGTQLLQDDILINLKAEHPPFFSRFKYLVELV-GADDAD 114

Query: 121 LEWGRAHWRSLKNSGY 136
               RA ++  ++ GY
Sbjct: 115 KALARARYKFYRDRGY 130


>gi|23009874|ref|ZP_00050762.1| hypothetical protein Magn03004711 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 60

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 93  VDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           ++ A +   D   Y+++  + +  D  +L   R  WR  K +G+A
Sbjct: 1   MEGADL-PEDAQSYQRICILFDGTDTDALLRAREQWRGAKAAGHA 44


>gi|269963276|ref|ZP_06177608.1| DNA polymerase III subunit chi [Vibrio harveyi 1DA3]
 gi|269831991|gb|EEZ86118.1| DNA polymerase III subunit chi [Vibrio harveyi 1DA3]
          Length = 150

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  N
Sbjct: 35  RQGAKVYLNCQDKPHAEQLAEAFWQIDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPN 91

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145


>gi|153834582|ref|ZP_01987249.1| DNA polymerase III subunit chi [Vibrio harveyi HY01]
 gi|148869025|gb|EDL68070.1| DNA polymerase III subunit chi [Vibrio harveyi HY01]
          Length = 149

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  N
Sbjct: 34  RQGAKVYLNCQDKPHAEQLAEAFWQIDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPN 90

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 91  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|156975870|ref|YP_001446777.1| DNA polymerase III subunit chi [Vibrio harveyi ATCC BAA-1116]
 gi|156527464|gb|ABU72550.1| hypothetical protein VIBHAR_03636 [Vibrio harveyi ATCC BAA-1116]
          Length = 150

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  N
Sbjct: 35  RQGAKVYLNCKDKPHAEQLAEAFWQIDADKFMAHNL-VGEGPKYATN--IEIGHEGVKPN 91

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145


>gi|229521567|ref|ZP_04410985.1| DNA polymerase III chi subunit [Vibrio cholerae TM 11079-80]
 gi|229524485|ref|ZP_04413890.1| DNA polymerase III chi subunit [Vibrio cholerae bv. albensis VL426]
 gi|229527562|ref|ZP_04416954.1| DNA polymerase III chi subunit [Vibrio cholerae 12129(1)]
 gi|229335194|gb|EEO00679.1| DNA polymerase III chi subunit [Vibrio cholerae 12129(1)]
 gi|229338066|gb|EEO03083.1| DNA polymerase III chi subunit [Vibrio cholerae bv. albensis VL426]
 gi|229341161|gb|EEO06165.1| DNA polymerase III chi subunit [Vibrio cholerae TM 11079-80]
 gi|327484990|gb|AEA79397.1| DNA polymerase III chi subunit [Vibrio cholerae LMA3894-4]
          Length = 154

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D               L +    +G R+ +QC  +   + L E  W  +
Sbjct: 6   MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 65

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 66  PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 121

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 122 VPCA-ENAKQLARERYKLYRQAGY 144


>gi|147674807|ref|YP_001218000.1| DNA polymerase III subunit chi [Vibrio cholerae O395]
 gi|153215719|ref|ZP_01950100.1| DNA polymerase III, chi subunit [Vibrio cholerae 1587]
 gi|153801098|ref|ZP_01955684.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-3]
 gi|153827687|ref|ZP_01980354.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-2]
 gi|153831431|ref|ZP_01984098.1| DNA polymerase III, chi subunit [Vibrio cholerae 623-39]
 gi|254225901|ref|ZP_04919503.1| DNA polymerase III, chi subunit [Vibrio cholerae V51]
 gi|254291420|ref|ZP_04962212.1| DNA polymerase III, chi subunit [Vibrio cholerae AM-19226]
 gi|262167533|ref|ZP_06035238.1| DNA polymerase III chi subunit [Vibrio cholerae RC27]
 gi|124114637|gb|EAY33457.1| DNA polymerase III, chi subunit [Vibrio cholerae 1587]
 gi|124123331|gb|EAY42074.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-3]
 gi|125621527|gb|EAZ49859.1| DNA polymerase III, chi subunit [Vibrio cholerae V51]
 gi|146316690|gb|ABQ21229.1| DNA polymerase III, chi subunit [Vibrio cholerae O395]
 gi|148873088|gb|EDL71223.1| DNA polymerase III, chi subunit [Vibrio cholerae 623-39]
 gi|149737835|gb|EDM52740.1| DNA polymerase III, chi subunit [Vibrio cholerae MZO-2]
 gi|150422610|gb|EDN14565.1| DNA polymerase III, chi subunit [Vibrio cholerae AM-19226]
 gi|227014392|gb|ACP10602.1| DNA polymerase III, chi subunit [Vibrio cholerae O395]
 gi|262023986|gb|EEY42682.1| DNA polymerase III chi subunit [Vibrio cholerae RC27]
          Length = 149

 Score = 57.8 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D               L +    +G R+ +QC  +   + L E  W  +
Sbjct: 1   MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 61  PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 117 VPCA-ENAKQLARERYKLYRQAGY 139


>gi|262373932|ref|ZP_06067209.1| DNA polymerase III chi subunit [Acinetobacter junii SH205]
 gi|262310943|gb|EEY92030.1| DNA polymerase III chi subunit [Acinetobacter junii SH205]
          Length = 138

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 14/140 (10%)

Query: 2   RTLLFYRFKNDWE---YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58
             + FY F+N  E    +   L +    +  +V   C +  +++ L+E LWT+    F+P
Sbjct: 5   AQISFYLFENSTERQVESACRLCRKILNQHPKVWWYCDNAEMQNELDEKLWTFDPTSFIP 64

Query: 59  HGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
           HG+ + +         V ++    ++N   +    + A     +     + +  I  +++
Sbjct: 65  HGIHLENSA-------VCISEELPSSNDWIVFNFNNHALEQTQEF----RHIIEIIENNE 113

Query: 119 GSLEWGRAHWRSLKNSGYAP 138
            + + GR  ++  +  G AP
Sbjct: 114 IAKQIGREKFKMYRRLGIAP 133


>gi|229513429|ref|ZP_04402893.1| DNA polymerase III chi subunit [Vibrio cholerae TMA 21]
 gi|229349306|gb|EEO14262.1| DNA polymerase III chi subunit [Vibrio cholerae TMA 21]
          Length = 154

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D               L +    +G R+ +QC  +   + L E  W  +
Sbjct: 6   MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 65

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 66  PEQFLAHNLVGEGPKFGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 121

Query: 113 INTDDQGSLEWGRAHWRSLKNSGY 136
           +    + + +  R  ++  + +GY
Sbjct: 122 VPCA-ENAKQLARERYKLYRQAGY 144


>gi|163803710|ref|ZP_02197570.1| DNA polymerase III subunit chi [Vibrio sp. AND4]
 gi|159172493|gb|EDP57358.1| DNA polymerase III subunit chi [Vibrio sp. AND4]
          Length = 149

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C ++   + L E  W    D F  H + VG+   +++   + +  + +  N
Sbjct: 34  RQGAKVYLNCQNKPHAEQLAEAFWQVDADTFTAHNL-VGEGPKYATN--IEIGHNGVKPN 90

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY
Sbjct: 91  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARQRYKIYRQAGY 139


>gi|149190548|ref|ZP_01868818.1| DNA polymerase III subunit chi [Vibrio shilonii AK1]
 gi|148835672|gb|EDL52639.1| DNA polymerase III subunit chi [Vibrio shilonii AK1]
          Length = 151

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 29/157 (18%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQ----------------CGSERVRDSL 44
           M T  FY    D E           ++G    V                 C  +   + L
Sbjct: 1   MNTATFYIINEDSEQ--------ASQQGWFAYVHFLCRHFTAQGAKLYINCSDKAEAELL 52

Query: 45  NEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVD 104
            EY W    + F+ H +         +  PV +    L  + +     ++ A+ H     
Sbjct: 53  AEYFWQVTPEQFIAHNLIGEG---PKNGTPVEIGHEGLKPSWNRQL-AINLANSHATFAQ 108

Query: 105 YYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 109 SFGQVVDFVPC-EEKAKQTARERYKIYRQAGYQLQTI 144


>gi|328471444|gb|EGF42339.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus 10329]
          Length = 149

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  +
Sbjct: 34  RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 90

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 91  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|308094748|ref|ZP_05891701.2| DNA polymerase III subunit chi [Vibrio parahaemolyticus AN-5034]
 gi|308095227|ref|ZP_05904191.2| DNA polymerase III subunit chi [Vibrio parahaemolyticus Peru-466]
 gi|308126228|ref|ZP_05908662.2| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ4037]
 gi|308087446|gb|EFO37141.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus Peru-466]
 gi|308093154|gb|EFO42849.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AN-5034]
 gi|308107552|gb|EFO45092.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ4037]
          Length = 150

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  +
Sbjct: 35  RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 91

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 145


>gi|28899419|ref|NP_799024.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28807655|dbj|BAC60908.1| DNA polymerase III, chi subunit [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 149

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  +
Sbjct: 34  RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 90

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 91  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|213025672|ref|ZP_03340119.1| DNA polymerase III subunit chi [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 103

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 1  MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 11 MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACEDEKQAIRLDEALWARP 70

Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           + F+PH +        +   PV +    
Sbjct: 71 AESFVPHNLAGEGPRGGA---PVEIAWPQ 96


>gi|153840105|ref|ZP_01992772.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ3810]
 gi|149746290|gb|EDM57362.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus AQ3810]
          Length = 147

 Score = 55.1 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +    +  +
Sbjct: 32  RQGAKVYLNCQDKPHAEQLAEAFWQIDADQFMAHNL-VGEGPKYATN--IEIGHDGVKPS 88

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 89  WNRQLV-INLAENETTFANKFAQVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 142


>gi|260779403|ref|ZP_05888294.1| DNA polymerase III chi subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604493|gb|EEX30793.1| DNA polymerase III chi subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 149

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 1   MRTLLFYRF--------KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY          +  +E  +L L     ++G +V + C  ++  + L E  W   
Sbjct: 1   MPNATFYIIKPDSPQANRQGFEQYVLFLAGHFAKQGAKVYLHCHDKQHAEQLAECFWQVD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + +L H +        +    + +    +  + +     ++ A       + + +VV  
Sbjct: 61  AEQYLAHNLTGEGPKYGTG---IEIGYQGVKPSWNRQLV-INLAENETTFANKFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +   ++ + +  R  ++  + +GY    I
Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|33519517|ref|NP_878349.1| DNA polymerase III, chi subunit [Candidatus Blochmannia floridanus]
 gi|33517180|emb|CAD83562.1| DNA polymerase III, chi subunit [Candidatus Blochmannia floridanus]
          Length = 153

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 6   FYRFKNDW---EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62
           F   KND    E  +  L +  +  GK + + C +      +NE LW ++K+ FLPHG+ 
Sbjct: 13  FIHHKNDLNTIEQLVCHLTKIHWRLGKTILITCDTHDQAKKINEALWNFEKNSFLPHGLF 72

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE 122
             +  +     P+ +  S    +      L++    +      + +++  +  ++    +
Sbjct: 73  SKNTYNI----PITIYWSQCCYDNKYRNTLINLMQKNKNFFLNFHEIIDFVP-NEDNLKK 127

Query: 123 WGRAHWRSLKNSGYA 137
             R  ++S ++ G+ 
Sbjct: 128 LARIRYKSYRSLGFN 142


>gi|43310|emb|CAA33226.1| unnamed protein product [Escherichia coli K-12]
          Length = 102

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 1  MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M+   FY   ND         E  +  +  + +  GKRV + C  E+    L+E LW   
Sbjct: 1  MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60

Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISS 81
           + F+PH +        +   PV +    
Sbjct: 61 AESFVPHNLAGEGPRGGA---PVEIAWPQ 86


>gi|260771003|ref|ZP_05879932.1| DNA polymerase III chi subunit [Vibrio furnissii CIP 102972]
 gi|260614240|gb|EEX39430.1| DNA polymerase III chi subunit [Vibrio furnissii CIP 102972]
 gi|315179051|gb|ADT85965.1| DNA polymerase III subunit chi [Vibrio furnissii NCTC 11218]
          Length = 149

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 1   MRTLLFYRFKNDWEYNLL-------VLLQDEYEK-GKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY  + D             V L   + + G +V +QC +++  + + E  W  +
Sbjct: 1   MATATFYIVRPDSPQATAAGFEAYVVFLSQHFARQGAKVYLQCATQQHAEQIAERFWQVE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              FL H + VG+   + +   + +    +  + +     ++ A  H      + +VV  
Sbjct: 61  AKDFLGHNL-VGEGPKYGTN--IEIGHVGVKPSWNRQL-AINLADNHTTFAKAFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +  +++ + +  R  ++  + +GY    I
Sbjct: 117 VP-NEENAKQRSRERYKLYRQAGYQLQTI 144


>gi|126640319|ref|YP_001083303.1| DNA polymerase III chi subunit [Acinetobacter baumannii ATCC 17978]
          Length = 95

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 42  DSLNEYLWTWKKDGFLPHGVDVGDEGD-FSSFQPVLLTISSLNANTSTIRFLVDEASMHI 100
            +L+E LW++    F+ HGVD  D     S+ QP        N N              +
Sbjct: 5   QTLDEKLWSFDPTSFIAHGVDQVDAAVCISAKQPSEQGWLVFNFNN-----------HAL 53

Query: 101 GDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
             V+++  ++ I+  +++ + + GR  ++  +  G  P
Sbjct: 54  EQVNHFSHIIEIVE-NNEAAKQIGREKFKMYRRLGIEP 90


>gi|262393200|ref|YP_003285054.1| DNA polymerase III chi subunit [Vibrio sp. Ex25]
 gi|262336794|gb|ACY50589.1| DNA polymerase III chi subunit [Vibrio sp. Ex25]
          Length = 150

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
            +G +V + C  +   + L E  W    D F+ H + VG+   +++   + +  + +  +
Sbjct: 35  RQGAKVYLNCQDKPHAEQLAEAFWQVDADKFMAHNL-VGEGPKYATN--IEIGHNGVKPS 91

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            +     ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  WNRQLV-INLAENETTFANKFAQVVDFVPC-EKKAKQLARERYKIYRQAGYQLQTI 145


>gi|27364859|ref|NP_760387.1| DNA polymerase III subunit chi [Vibrio vulnificus CMCP6]
 gi|37681093|ref|NP_935702.1| DNA polymerase III subunit chi [Vibrio vulnificus YJ016]
 gi|320155250|ref|YP_004187629.1| DNA polymerase III subunit chi [Vibrio vulnificus MO6-24/O]
 gi|27361004|gb|AAO09914.1| DNA polymerase III chi subunit [Vibrio vulnificus CMCP6]
 gi|37199843|dbj|BAC95673.1| DNA polymerase III, chi subunit [Vibrio vulnificus YJ016]
 gi|319930562|gb|ADV85426.1| DNA polymerase III chi subunit [Vibrio vulnificus MO6-24/O]
          Length = 149

 Score = 52.4 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 57/149 (38%), Gaps = 13/149 (8%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY  +                 L     ++G +V +   S+R  + + EY W  +
Sbjct: 1   MQRATFYIVREHTPQATPEGFAHYVVFLAHHFAKQGAKVYLNGESKRHAEQIAEYFWQVE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+ H + VG+   +++   + +    +  + +     ++ A       + + +VV  
Sbjct: 61  PAQFVAHNL-VGEGPKYATN--IEIGHEGVKPSWNRQLV-INLAKNETTFANKFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +   ++ + +  R  ++  + +GY    I
Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|323496136|ref|ZP_08101196.1| DNA polymerase III subunit chi [Vibrio sinaloensis DSM 21326]
 gi|323318880|gb|EGA71831.1| DNA polymerase III subunit chi [Vibrio sinaloensis DSM 21326]
          Length = 149

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY    D            +L L++   ++G +V + C  +   + L E+ W  +
Sbjct: 1   MANATFYIVNPDSPQASADGFDAYVLFLVRHFAKQGAKVYINCHDKTHAEQLAEHFWQVE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              ++ H + VG+   +++   + +   S+  + +     ++ A  +    + + +VV  
Sbjct: 61  PSEYMAHNL-VGEGPRYATN--IEIGHQSVKPSWNRQLV-INLAENNTTFANKFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +   ++ + +  R  ++  + +GY    I
Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|260772180|ref|ZP_05881097.1| DNA polymerase III chi subunit [Vibrio metschnikovii CIP 69.14]
 gi|260613047|gb|EEX38249.1| DNA polymerase III chi subunit [Vibrio metschnikovii CIP 69.14]
          Length = 149

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 1   MRTLLFYRFKNDWEYN--------LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY   ND            ++ L      +G +V V C  +   + L E  W  +
Sbjct: 1   MATATFYLIANDSPQATITGFEHYIVYLAHHFARQGAKVYVHCQDQLHAEQLAERFWQVE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNA--NTSTIRFLVDEASMHIGDVDYYEKVV 110
              F+ H + +G+   + +   + +    +    N   +   ++ A  H    + + +VV
Sbjct: 61  PTQFIAHNL-IGEGPKYGTL--IEIGYQGVKPTYNRQLV---INLADNHTTFANAFREVV 114

Query: 111 FIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
             +   ++ + +  R  ++  + +GY    I
Sbjct: 115 DFVPC-EEKTKQLARERYKIYRQAGYQLQTI 144


>gi|93004881|ref|YP_579318.1| putative DNA polymerase III, chi subunit [Psychrobacter
           cryohalolentis K5]
 gi|92392559|gb|ABE73834.1| putative DNA polymerase III, chi subunit [Psychrobacter
           cryohalolentis K5]
          Length = 151

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 4   LLFYRFKNDWEYN----LLVLLQDEYEKG-KRVSVQCGSERVRDSLNEYLWTWKKDGFLP 58
           + FY    +   +    +  L Q    K  + + +    + +  +L++ LW  +   F+P
Sbjct: 3   VSFYVLTENKAQDFLGFICQLTQTALNKSNQSLLILIDDDELLSTLDKALWEQEATSFIP 62

Query: 59  HGVDVGDEGD--FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYY---------E 107
           H   +  + D    +  PVLL+        +  + +V   ++H   V  +          
Sbjct: 63  HQRLLNADTDINHKALAPVLLSNYMP----ANFKGMVLNTTIHP--VSTFMTATINAKPT 116

Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           +V+ +I   D  S++ GR  ++S +  GY 
Sbjct: 117 RVLELIK-PDAASVQEGRHKYKSYQQLGYE 145


>gi|218710651|ref|YP_002418272.1| DNA polymerase III subunit chi [Vibrio splendidus LGP32]
 gi|218323670|emb|CAV19984.1| DNA polymerase III chi subunit [Vibrio splendidus LGP32]
          Length = 149

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G ++ + C  +   + + E  W  +   F+ H + VG+   +S+   + +    +  N 
Sbjct: 35  QGAKLYLNCNDKVHAERIAEVFWQVEPTEFIAHNL-VGEGPKYSTN--IEIGHQGVKPNW 91

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +     ++ A  H    + + +V+  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  NRQLV-INLADNHTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|86147553|ref|ZP_01065863.1| DNA polymerase III subunit chi [Vibrio sp. MED222]
 gi|85834592|gb|EAQ52740.1| DNA polymerase III subunit chi [Vibrio sp. MED222]
          Length = 149

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G ++ + C  +   + + E  W  +   F+ H + VG+   +S+   + +    +  N 
Sbjct: 35  QGAKLYLNCNDKVHAERIAEVFWQVEPTEFIAHNL-VGEGPKYSTN--IEIGHQGVKPNW 91

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +     ++ A  H    + + +V+  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  NRQLV-INLADNHTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|323492967|ref|ZP_08098105.1| DNA polymerase III subunit chi [Vibrio brasiliensis LMG 20546]
 gi|323312798|gb|EGA65924.1| DNA polymerase III subunit chi [Vibrio brasiliensis LMG 20546]
          Length = 149

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 1   MRTLLFYRFKNDWEYNLLV-------LLQDEYE-KGKRVSVQCGSERVRDSLNEYLWTWK 52
           M    FY    +               L   +  +G +V + C ++   + + E  W   
Sbjct: 1   MANATFYLITEESHQATPEGFEEYILFLSRHFAKQGAKVYLNCNNKAHAEQIAERFWQVD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
              F+ H + VG+   +++   + +    +  + +     ++ A       + + +VV  
Sbjct: 61  SSEFMAHNL-VGEGPRYATN--IEIGYQGVKPSWNRQLV-INLAENETTFANKFAEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +   ++ + +  R  ++  + +GY    I
Sbjct: 117 VPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|148651869|ref|YP_001278962.1| DNA polymerase III chi subunit, HolC [Psychrobacter sp. PRwf-1]
 gi|148570953|gb|ABQ93012.1| DNA polymerase III, chi subunit [Psychrobacter sp. PRwf-1]
          Length = 166

 Score = 49.7 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 39  RVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASM 98
                L+  LW++    F+ H   + +        PV  ++ S          L   A+ 
Sbjct: 58  ERLKQLDTQLWSFDPVSFVAHDFILEEAAVSQLSAPV--SLVSTLPKGFDGVILNLAATP 115

Query: 99  HIGDVDYY-----EKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
               V+       E+V+ II T D+   + GR  +R+ +  G+ 
Sbjct: 116 LPLSVETTAAVLPERVLEII-TPDEAGKQLGRDKYRAYQQLGFE 158


>gi|84387838|ref|ZP_00990853.1| DNA polymerase III subunit chi [Vibrio splendidus 12B01]
 gi|84377353|gb|EAP94221.1| DNA polymerase III subunit chi [Vibrio splendidus 12B01]
          Length = 149

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G ++ + C  +   + + E  W  + + F+ H + VG+   +S+   + +    +  N 
Sbjct: 35  QGAKLYLNCNDKEHAERIAEVFWQVEPNEFIAHNL-VGEGPKYSTN--IEIGYQGVKHNW 91

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +     ++ A  +    + + +V+  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  NRQLV-INLADNNTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|312884629|ref|ZP_07744332.1| DNA polymerase III subunit chi [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367721|gb|EFP95270.1| DNA polymerase III subunit chi [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 150

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 13/149 (8%)

Query: 1   MRTLLFYRFKNDWEYN--LLVLLQDEYEKGK------RVSVQCGSERVRDSLNEYLWTWK 52
           M    FY  +   +    L  L    Y  G       RV + C   +  + L E  W   
Sbjct: 1   MSRATFYIVQETSKQASYLGFLNYVVYLAGHFAKQQARVYLNCHDIKEAEQLAELFWQAD 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
           +  F+ H + VG+   + +   + +    +  + +  + +++ A ++    + + +VV  
Sbjct: 61  EKEFIAHNL-VGEGPKYGTK--IEIGHQGVKPSWNR-QIVINMAKVNTTFANRFTEVVDF 116

Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +   D+ + +  R  ++  +  GY    I
Sbjct: 117 VPL-DKKAKQIARERYKLYRQMGYQLQTI 144


>gi|261253955|ref|ZP_05946528.1| DNA polymerase III chi subunit [Vibrio orientalis CIP 102891]
 gi|260937346|gb|EEX93335.1| DNA polymerase III chi subunit [Vibrio orientalis CIP 102891]
          Length = 149

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           +V + C  +   + + E  W      F+ H + VG+   +++   V +    +  + +  
Sbjct: 38  KVYLNCHDKAHAEQIAELFWQVDAKEFIAHNL-VGEGPKYATN--VEIGYQGVRPSWNRQ 94

Query: 90  RFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
              ++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 95  LV-INLAENDTTFANKFAEVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|221066431|ref|ZP_03542536.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni KF-1]
 gi|220711454|gb|EED66822.1| DNA polymerase III chi subunit HolC [Comamonas testosteroni KF-1]
          Length = 77

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 74  PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKN 133
           PV+L  +    +      LV+         + +E+VV I+++ D+   +  RA WR    
Sbjct: 6   PVIL--AEHLQDLPHYDVLVNLTPQVPSGFERFERVVEIVSSGDEMDRQDARARWRDYAA 63

Query: 134 SGYA 137
            G++
Sbjct: 64  RGFS 67


>gi|148977746|ref|ZP_01814302.1| DNA polymerase III subunit chi [Vibrionales bacterium SWAT-3]
 gi|145962960|gb|EDK28230.1| DNA polymerase III subunit chi [Vibrionales bacterium SWAT-3]
          Length = 149

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G ++ + C  +   + + E  W  +   F+ H + VG+   +S+   + +    +  N 
Sbjct: 35  QGAKLYLNCNDKAHAERIAEVFWQVEPSEFIAHNL-VGEGPKYSTN--IEIGYQGVKHNW 91

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +     ++ A  H    + + +V+  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  NRQLV-INLADNHTTFANAFAQVIDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|62083316|gb|AAX62381.1| HolC [Vibrio cholerae non-O1/non-O139]
          Length = 145

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 23/149 (15%)

Query: 1   MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M+   FY   ND         E  +  +  + +  GKRV + C  E          W   
Sbjct: 1   MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDESRLTG-----WMNP 55

Query: 53  ----KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEK 108
                  F+P     G  G      PV +      + +S    L+   +        + +
Sbjct: 56  VGASGRSFVPIITGEGPRGGA----PVEIAWPQKRS-SSRRDILISLRTSFADFATAFTE 110

Query: 109 VVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
           VV  +   +    +  R  +++ + +G+ 
Sbjct: 111 VVDFVP-YEDSLKQLARERYKAYRVAGFN 138


>gi|254507365|ref|ZP_05119500.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus 16]
 gi|219549621|gb|EED26611.1| DNA polymerase III subunit chi [Vibrio parahaemolyticus 16]
          Length = 149

 Score = 47.4 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 27  KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANT 86
           +G +V + C  +   + + E  W  +   F+ H + VG+   + +   V +   ++  + 
Sbjct: 35  QGAKVYLNCHDKSHAEQIAETFWQAEPHHFIAHNL-VGEGPKYGTK--VEIGYQAVKPSW 91

Query: 87  STIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
           +  + +++ A       + + +VV  +   ++ + +  R  ++  + +GY    I
Sbjct: 92  NR-QIVINLAENETTFANKFAEVVDFVPC-EEKAKQLARERYKIYRQAGYQLQTI 144


>gi|257454354|ref|ZP_05619617.1| DNA polymerase III, chi subunit [Enhydrobacter aerosaccus SK60]
 gi|257448257|gb|EEV23237.1| DNA polymerase III, chi subunit [Enhydrobacter aerosaccus SK60]
          Length = 155

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 11/139 (7%)

Query: 2   RTLLFYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
             + FY    +      +  L+     K +   +   +  +  SL++ LW+     F+PH
Sbjct: 4   SQISFYILSPQKKQLAFVCQLISTVLAKSEDSIIVVAASEILPSLDDRLWSLSDVAFIPH 63

Query: 60  GVDVGDEGDFSSFQP--VLLTISSLNANTST--IRFLVDEASMHIGDVDYYEKVVFIINT 115
            +    +  +    P  V+LT +          +  L +EA +         +++ +I+ 
Sbjct: 64  QIIQQLDDFYQQKLPASVVLTDNIELITQFDGVVINLTNEAIVD----TQASRLLEVIDA 119

Query: 116 DDQGSLEWGRAHWRSLKNS 134
                +E GR  +R  +  
Sbjct: 120 A-PEQVESGRQKYRVYQAQ 137


>gi|71064623|ref|YP_263350.1| DNA polymerase III, chi subunit [Psychrobacter arcticus 273-4]
 gi|71037608|gb|AAZ17916.1| DNA polymerase III, chi subunit [Psychrobacter arcticus 273-4]
          Length = 152

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 36  GSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD--FSSFQPVLLTISSLNANTSTIRFLV 93
               +  +LNE LWT +   F+PH   +  + D    +  P+LL+        +  + +V
Sbjct: 41  DDAALLSALNEALWTQEATSFIPHQYLLDADTDINHKTLAPILLSSYMP----ANFKGMV 96

Query: 94  DEASMHIGDV-------DYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
              +++  +            +V+ +I   D  S++ GR  ++S +  GY 
Sbjct: 97  LNTTIYPVNTFMAATNNAQPTRVLELIK-PDATSVQEGRHKYKSYQQLGYE 146


>gi|264678994|ref|YP_003278901.1| DNA polymerase III chi subunit, HolC [Comamonas testosteroni CNB-2]
 gi|262209507|gb|ACY33605.1| DNA polymerase III chi subunit, HolC [Comamonas testosteroni CNB-2]
          Length = 77

 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 71  SFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRS 130
           +  PV+L  +    +      LV+         + + +VV I+++ D+   +  RA WR 
Sbjct: 3   AASPVIL--AEHLQDLPHYDVLVNLTPQVPSGFERFARVVEIVSSGDEMDRQDARARWRD 60

Query: 131 LKNSGYA 137
               G++
Sbjct: 61  YAARGFS 67


>gi|118496827|ref|YP_897877.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. novicida U112]
 gi|194324492|ref|ZP_03058264.1| putative DNA polymerase III chi subunit, HolC family [Francisella
           tularensis subsp. novicida FTE]
 gi|254372191|ref|ZP_04987683.1| DNA polymerase III protein [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|118422733|gb|ABK89123.1| DNA polymerase III, chi subunit [Francisella novicida U112]
 gi|151569921|gb|EDN35575.1| DNA polymerase III protein [Francisella novicida GA99-3549]
 gi|194321327|gb|EDX18813.1| putative DNA polymerase III chi subunit, HolC family [Francisella
           tularensis subsp. novicida FTE]
          Length = 146

 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + F   +  D    L VL+     EY   K +++      +   L++ LW   +D F
Sbjct: 1   MMKIEFKVLQTQDINQMLEVLITEVVKEYALQKTIAILAP-AGIAKQLDDKLWQDGQDSF 59

Query: 57  LPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           +PH   +           P+L+T +   A+   +   + + ++    V   E  +     
Sbjct: 60  IPHHCAINAREYNQYNNIPILITDNLFIASGYDVLINIMDVAVDPQRVKVKE--LKEFVY 117

Query: 116 DDQGSLEWGRAHWRSLK 132
               +L+  R  +   K
Sbjct: 118 QQDSALQASRKKYVYYK 134


>gi|208780558|ref|ZP_03247897.1| DNA polymerase III chi subunit, HolC family [Francisella novicida
           FTG]
 gi|208743533|gb|EDZ89838.1| DNA polymerase III chi subunit, HolC family [Francisella novicida
           FTG]
 gi|328676291|gb|AEB27161.1| DNA polymerase III (CHI subunit) protein [Francisella cf. novicida
           Fx1]
          Length = 145

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99
              L++ LW   +D F+PH   +           P+L+T +   A+   +   + + ++ 
Sbjct: 43  AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFIASGYDVLINIMDVAVD 102

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
              V   E  +         +L+  R  +   K
Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 133


>gi|254373674|ref|ZP_04989158.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
 gi|151571396|gb|EDN37050.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
          Length = 146

 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99
              L++ LW   +D F+PH   +           P+L+T +   A+   +   + + ++ 
Sbjct: 44  AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFIASGYDVLINIMDVAVD 103

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
              V   E  +         +L+  R  +   K
Sbjct: 104 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 134


>gi|46446685|ref|YP_008050.1| hypothetical protein pc1051 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400326|emb|CAF23775.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 150

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 24  EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLN 83
            +E+ KR+ +   +      ++  LW + +D FL H +      ++     +++T     
Sbjct: 38  SFEQEKRLQILVPTIEAGQYIDSLLWRYPEDSFLTHTLTTNLSPEW-----IVITT-EET 91

Query: 84  ANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
            N +    L++     I     + ++  + +      LE  +  +++ ++ G A
Sbjct: 92  VNLNLAARLLNLCPHPIKYFSLFAEIYELYDESHPQKLENSKLRFKNYQDWGLA 145


>gi|167626838|ref|YP_001677338.1| DNA polymerase III (chi subunit) protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167596839|gb|ABZ86837.1| DNA polymerase III (CHI subunit) protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 145

 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 4   LLFYRFKND-WEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           + F   +       L VL+     EY++ K +++   +  +   L++ LW   +D F+PH
Sbjct: 3   VEFRVLQTPDINQMLEVLIDTVIKEYDECKTIAILAPTG-IAKQLDDDLWQDGQDSFIPH 61

Query: 60  GVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
              +           P+L+T +    +   +   + E ++    V   E  +      + 
Sbjct: 62  HCAIAAREYNQYKNIPILITDNLFITSGYDVLINIMEVAVDPQRVKIKE--LKEFVYQED 119

Query: 119 GSLEWGRAHWRSLKNSG 135
            +L+  R  +   KNS 
Sbjct: 120 RALQASRKKYVYYKNSN 136


>gi|62262859|gb|AAX78108.1| unknown protein [synthetic construct]
          Length = 155

 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + F   +  D    L VL+     EY   K +++      +   L++ LW   +D F
Sbjct: 1   MMKIEFKVLQTQDINQMLEVLITEVVKEYALQKTIAILAP-AGIAKQLDDKLWQDGQDSF 59

Query: 57  LPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           +PH   +           P+L+T +    +   +   + + ++    V   E  +     
Sbjct: 60  IPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVDPQRVKVKE--LKEFVY 117

Query: 116 DDQGSLEWGRAHWRSLK 132
               +L+  R  +   K
Sbjct: 118 QQDSALQASRKKYVYYK 134


>gi|56707451|ref|YP_169347.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110669922|ref|YP_666479.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. tularensis FSC198]
 gi|187932166|ref|YP_001892151.1| DNA polymerase III, chi subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254370854|ref|ZP_04986859.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|56603943|emb|CAG44931.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320255|emb|CAL08314.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151569097|gb|EDN34751.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187713075|gb|ACD31372.1| DNA polymerase III, chi subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 146

 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 1   MRTLLFYRFKN-DWEYNLLVLLQ---DEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGF 56
           M  + F   +  D    L VL+     EY   K +++      +   L++ LW   +D F
Sbjct: 1   MMKIEFKVLQTQDINQMLEVLITEVVKEYALQKTIAILAP-AGIAKQLDDKLWQDGQDSF 59

Query: 57  LPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINT 115
           +PH   +           P+L+T +    +   +   + + ++    V   E  +     
Sbjct: 60  IPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVDPQRVKVKE--LKEFVY 117

Query: 116 DDQGSLEWGRAHWRSLK 132
               +L+  R  +   K
Sbjct: 118 QQDSALQASRKKYVYYK 134


>gi|213612874|ref|ZP_03370700.1| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 88

 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
             + F+PH +        +   PV +       N+S    L+   +        + +VV 
Sbjct: 1   PAESFVPHNLAGEGPRGGA---PVEIAWPQKR-NSSPRDILISLRTSFADFATAFTEVVD 56

Query: 112 IINTDDQGSLEWGRAHWRSLKNSGYA 137
            +   ++   +  R  +++ + +G+ 
Sbjct: 57  FVP-YEETLKQLARERYKAYRVAGFN 81


>gi|241667416|ref|ZP_04754994.1| DNA polymerase III (chi subunit) protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254875965|ref|ZP_05248675.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841986|gb|EET20400.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 145

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99
              L++ LW   +D F+PH   +           P+L+T +    +   +   + E ++ 
Sbjct: 43  AKQLDDDLWQDGQDSFIPHHCAIAAREYNQYKNIPILITDNLFITSGYDVLINIMEVAVD 102

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
              V   E  +      +  +L+  R  +   KNS 
Sbjct: 103 PQRVKIKE--LKEFVYQEDRALQASRKKYVYYKNSN 136


>gi|134302609|ref|YP_001122580.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|224456533|ref|ZP_03665006.1| DNA polymerase III, chi subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874290|ref|ZP_05247000.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|134050386|gb|ABO47457.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|254840289|gb|EET18725.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158595|gb|ADA77986.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 145

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99
              L++ LW   +D F+PH   +           P+L+T +    +   +   + + ++ 
Sbjct: 43  AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVD 102

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
              V   E  +         +L+  R  +   K
Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 133


>gi|115314147|ref|YP_762870.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. holarctica OSU18]
 gi|254367037|ref|ZP_04983073.1| DNA-directed DNA polymerase, CHI subunit [Francisella tularensis
           subsp. holarctica 257]
 gi|115129046|gb|ABI82233.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252863|gb|EBA51957.1| DNA-directed DNA polymerase, CHI subunit [Francisella tularensis
           subsp. holarctica 257]
          Length = 146

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99
              L++ LW   +D F+PH   +           P+L+T +    +   +   + + ++ 
Sbjct: 44  AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVD 103

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
              V   E  +         +L+  R  +   K
Sbjct: 104 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 134


>gi|89255643|ref|YP_513004.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. holarctica LVS]
 gi|156501593|ref|YP_001427658.1| DNA polymerase III subunit chi [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009915|ref|ZP_02274846.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368546|ref|ZP_04984562.1| DNA polymerase III protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953460|ref|ZP_06558081.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313258|ref|ZP_06803895.1| DNA polymerase III (chi subunit) protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|89143474|emb|CAJ78650.1| DNA polymerase III (CHI subunit) protein [Francisella tularensis
           subsp. holarctica LVS]
 gi|156252196|gb|ABU60702.1| putative DNA polymerase III chi subunit [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157121449|gb|EDO65640.1| DNA polymerase III protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 145

 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99
              L++ LW   +D F+PH   +           P+L+T +    +   +   + + ++ 
Sbjct: 43  AKQLDDKLWQDGQDSFIPHHCAINAREYNQYNNIPILITDNLFITSGYDVLINIMDVAVD 102

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLK 132
              V   E  +         +L+  R  +   K
Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVYYK 133


>gi|328675381|gb|AEB28056.1| DNA polymerase III (CHI subunit) protein [Francisella cf. novicida
           3523]
          Length = 145

 Score = 42.0 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 41  RDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ-PVLLTISSLNANTSTIRFLVDEASMH 99
              L++ LW   +D F+PH   +           P+L+T +    +   +   + E ++ 
Sbjct: 43  AKQLDDDLWQDGQDSFIPHHCAINAREYNQYKNIPILITDNLFITSGYDVLINIMEVAVD 102

Query: 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
              V   E  +         +L+  R  +   KNS 
Sbjct: 103 PQRVKVKE--LKEFVYQQDSALQASRKKYVFYKNSN 136


>gi|254468885|ref|ZP_05082291.1| hypothetical protein KB13_1110 [beta proteobacterium KB13]
 gi|207087695|gb|EDZ64978.1| hypothetical protein KB13_1110 [beta proteobacterium KB13]
          Length = 139

 Score = 40.9 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 1   MRTLLF-YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59
           M  + F Y   +  E  L ++L   Y K +R  + C +      L++ LW     GF P 
Sbjct: 1   MTQIEFIYNLDSYKEG-LALILDKRY-KNQRTIIFCDNTETSHELSDSLWMNP--GFFP- 55

Query: 60  GVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQG 119
              +  E   S  QP    +     N      +++ +         YEK + ++   D  
Sbjct: 56  -NIIWSEKLSSDVQPSENFLIGSQFNKYFDELVINVSGQECSFFSRYEKSIELVLKSD-N 113

Query: 120 SLEWGRAHWRSLKNSGYA 137
                R   + ++  GY 
Sbjct: 114 EKASARERLKKIRECGYE 131


>gi|9652253|gb|AAF91463.1|AF282267_2 DNA polymerase III holoenzyme chi subunit [Vibrio cholerae O395]
          Length = 123

 Score = 40.9 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
           M T  FY    D               L +    +G R+ +QC  +   + L E  W  +
Sbjct: 1   MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60

Query: 53  KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
            + FL H +        ++ +   + +S     +   +  ++ A         + +VV  
Sbjct: 61  PEQFLAHNLVGEGPKSGTAIEIGYVGVSP----SWNRQLAINLADNQTTFARTFTEVVDF 116

Query: 113 IN 114
           + 
Sbjct: 117 VP 118


>gi|118594054|ref|ZP_01551401.1| DNA polymerase III chi subunit, HolC [Methylophilales bacterium
           HTCC2181]
 gi|118439832|gb|EAV46459.1| DNA polymerase III chi subunit, HolC [Methylophilales bacterium
           HTCC2181]
          Length = 139

 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           M  + F     D +  +  ++    +K +        + +  SL++ LW      FLPH 
Sbjct: 1   MTNIQFIFNVADKQGLIFEIIASSVKKNRSSLTLFDDKALMVSLSDMLWHNDVFSFLPHQ 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIR--FLVDEASMHIGDVDYYEKVVFIINTDDQ 118
            +       SS   + L+      N        L++  +  I     Y K+  +I   D+
Sbjct: 61  TNQS-----SSINKICLSD-----NGIKYMDDILINATNEKIEGFSRYLKLYELI-GLDE 109

Query: 119 GSLEWGRAHWRSLKNSGY 136
                 R  +   K+ GY
Sbjct: 110 LEKANARKRFTFYKDCGY 127


>gi|121730354|ref|ZP_01682712.1| hypothetical protein VCV52_2462 [Vibrio cholerae V52]
 gi|121627895|gb|EAX60476.1| hypothetical protein VCV52_2462 [Vibrio cholerae V52]
          Length = 71

 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 1  MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
          M T  FY    D               L +    +G R+ +QC  +   + L E  W  +
Sbjct: 1  MPTATFYLISPDSAQATPEGFAQYVLYLTRHFAAQGARIYLQCQDKPHAEQLAERFWQIE 60

Query: 53 KDGFLPHGVDV 63
           + FL H +  
Sbjct: 61 PEQFLAHNLVG 71


>gi|319779264|ref|YP_004130177.1| hypothetical protein TEQUI_1110 [Taylorella equigenitalis MCE9]
 gi|317109288|gb|ADU92034.1| hypothetical protein TEQUI_1110 [Taylorella equigenitalis MCE9]
          Length = 114

 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 10/109 (9%)

Query: 34  QCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIR--- 90
            C   ++ +  +E LW+     F+PH     D         +++    +N +        
Sbjct: 2   YCHDPKLANKFSERLWSKDDCNFIPHYFAGDDIVIPPR---IIICNEDIN-DWFKKLNPQ 57

Query: 91  --FLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137
             FL++ ++ ++ +   +E ++      +  S    R      K  G+ 
Sbjct: 58  PYFLLNLSTDYLKEATLFENILE-FVMSESESKRLARDRVLKYKQDGHE 105


>gi|290941|gb|AAA61957.1| DNA polymerase III Chi subunit [Haemophilus influenzae]
          Length = 88

 Score = 37.0 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 52  KKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
             + F+PH +        +   P+ ++      N      L++           + +++ 
Sbjct: 1   DPNEFVPHNLSGEATQYPT---PIEISWLGKR-NLQRRDLLINLQQEIPDFSHSFTQIID 56

Query: 112 IINTDDQGSLEWGRAHWRSLKNSG 135
            +  DD       R  ++ L+  G
Sbjct: 57  FVPKDD-ALKTQARERYKQLRLQG 79


>gi|227495780|ref|ZP_03926091.1| secreted protein [Actinomyces urogenitalis DSM 15434]
 gi|226834709|gb|EEH67092.1| secreted protein [Actinomyces urogenitalis DSM 15434]
          Length = 525

 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 21  LQDEYEKGKRVSVQC-GSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79
           L+     G+RV +Q   ++   D++    W + + G  P    V  E D       ++++
Sbjct: 433 LRRAVRAGERVRLQAEAADPDGDAVALRWWAYPEAG--PRPCPVAPELDDDGQGGAVVSV 490

Query: 80  SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
                    I  +V+     +  +  Y++VV ++ 
Sbjct: 491 PQEAEPGQEIHLVVEGTDDGVPALTRYQRVVLVVG 525


>gi|237732266|ref|ZP_04562747.1| thiamine biosynthesis lipoprotein ApbE [Citrobacter sp. 30_2]
 gi|226907805|gb|EEH93723.1| thiamine biosynthesis lipoprotein ApbE [Citrobacter sp. 30_2]
          Length = 350

 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 13/58 (22%)

Query: 11 NDWEYNLL--VLLQDEYEKGKRVSVQCGSERVRDSL-----------NEYLWTWKKDG 55
             +  +   VL         RVSV    ++    L           ++ L T+K D 
Sbjct: 25 KPAQTTIPATVLKGKTMGTFWRVSVVGVDDKRARELQAKIQTQLDADDQLLSTYKNDS 82


>gi|156933164|ref|YP_001437080.1| thiamine biosynthesis lipoprotein ApbE [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531418|gb|ABU76244.1| hypothetical protein ESA_00975 [Cronobacter sakazakii ATCC BAA-894]
          Length = 328

 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 27/129 (20%)

Query: 18  LVLLQDEYEKGKRVSVQCGS-----------ERVRDSLNEYLWTWKKDGFL---PHGVDV 63
           LVL         RVS+               +   D+ +  L TWK D  L    H    
Sbjct: 12  LVLEGKTMGTSWRVSLADVDTARASELREKIQARLDADDRLLSTWKDDSALMRFNHARTT 71

Query: 64  GDEGDFSSFQPVL-----LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQ 118
                  +   ++     +   + NA   T+  LV+                  + T DQ
Sbjct: 72  APWPVDEAMADIVTESLRVGAKTDNAMDITVGPLVNLWGFGPDKQP--------VKTPDQ 123

Query: 119 GSLEWGRAH 127
             ++  RA 
Sbjct: 124 AQIDAARAR 132


>gi|296446523|ref|ZP_06888466.1| putative ABC phosphate/phosphonate transporter, periplasmic ligand
           binding protein [Methylosinus trichosporium OB3b]
 gi|296256019|gb|EFH03103.1| putative ABC phosphate/phosphonate transporter, periplasmic ligand
           binding protein [Methylosinus trichosporium OB3b]
          Length = 260

 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 33  VQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFL 92
           ++         L+E   T      LP+          ++     L     +  T+ IR  
Sbjct: 172 IRPVDSERYRILDE---TISSPS-LPYVTSADTSESDAAAIAATLHEIMDDPQTADIRGA 227

Query: 93  VDEASMHIGDVDYYEKVVFI 112
           ++ A +   DVD YE+++  
Sbjct: 228 LELAGLSTPDVDAYERLMEF 247


>gi|254283850|ref|ZP_04958818.1| hypothetical protein NOR51B_2353 [gamma proteobacterium NOR51-B]
 gi|219680053|gb|EED36402.1| hypothetical protein NOR51B_2353 [gamma proteobacterium NOR51-B]
          Length = 471

 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 6   FYRFKNDWEYNLLVLLQDEYEKGKRV-SVQCGSERVRDSLNEYLWTWKKD 54
           F     D E  +L++++   E G    +V   S     +    LW  ++D
Sbjct: 284 FEHLGEDTEAQILMIVERCMESGWVADAVMSQSVAQARA----LWRLRED 329


>gi|330938927|gb|EGH42428.1| DNA polymerase III subunit chi [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 62

 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139
                 LV+           + +V  ++  +D       R  +RS +  GY P 
Sbjct: 3   GEHSDLLVNLDLSIPAFFKRFARVAEVVV-EDPAIRLAARESFRSYREQGYPPQ 55


>gi|325674807|ref|ZP_08154494.1| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Rhodococcus equi
           ATCC 33707]
 gi|325554393|gb|EGD24068.1| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Rhodococcus equi
           ATCC 33707]
          Length = 257

 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 26  EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNAN 85
           ++G RV+V        +   E +          H VD+ D    ++    + ++      
Sbjct: 25  QRGWRVAVLDRDAESLERTGELVGVACVAA---HAVDIRDGDAVAAAVDTIESLHGPLTG 81

Query: 86  TSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDVI 141
            + +  +++  S+   + D +++V    + +  G L   R+  R+++  G    V+
Sbjct: 82  LAHVAGVLETGSVLDSEPDSWQRV---FDVNVTGLLNVIRSVGRAMRARGAGAIVV 134


>gi|171913821|ref|ZP_02929291.1| FkbH like protein [Verrucomicrobium spinosum DSM 4136]
          Length = 607

 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 7   YR-FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD 65
           Y   K  +    L L+      G R       + +   L+  LW        PHG+ VG 
Sbjct: 224 YHWLKQPFSPAGLSLVGRHLATGVRALTSGRRKVLVLDLDNTLWGGVVGESGPHGIAVGG 283

Query: 66  EGDFSSFQP------------VLLTISSLNANTSTIR 90
            G+  +F              V+L +SS N N +  R
Sbjct: 284 TGEGQAFTAFQKYAKRLKDSGVILAVSSKN-NDADAR 319


>gi|288934297|ref|YP_003438356.1| ApbE family lipoprotein [Klebsiella variicola At-22]
 gi|288889026|gb|ADC57344.1| ApbE family lipoprotein [Klebsiella variicola At-22]
          Length = 347

 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 14/81 (17%)

Query: 10  KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSL-----------NEYLWTWKKDGFL- 57
                    VL         RVSV    E   ++L           +  L TWK D  L 
Sbjct: 23  ATTPASTATVLDGKTMGTFWRVSVIGVDEAKAEALRAKVQAQLDADDRLLSTWKNDSALM 82

Query: 58  --PHGVDVGDEGDFSSFQPVL 76
              H  D        +   ++
Sbjct: 83  RFNHAADTQPWPVSEAMADIV 103


>gi|194211882|ref|XP_001490035.2| PREDICTED: similar to histone deacetylase 7 isoform 1 [Equus
           caballus]
          Length = 989

 Score = 34.3 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 56  FLPHGVDVGDEGDFSSF-QPVLLTISSLNANTS 87
           FLPHG++    G   S  QP+LL +     +  
Sbjct: 327 FLPHGLEPEAGGPLPSRLQPILL-LDPSAPHAP 358


>gi|213965137|ref|ZP_03393335.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
 gi|213952251|gb|EEB63635.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
          Length = 236

 Score = 34.3 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIG--DVDYYEKVVFIINTDD- 117
               D+ ++   QP  L I+  N      R  +DE  +     D+  YE+V   ++ +D 
Sbjct: 116 TATSDQPNYGDEQPT-LAITVHNPTGGECRVNLDEQQLRFEVYDLATYERVWSDVDCNDS 174

Query: 118 ----------QGSLEWGRAHWRSLKNS 134
                        + +  A W  L ++
Sbjct: 175 EGHGELVLAPGEEVNYA-ATWSRLTSA 200


>gi|290508500|ref|ZP_06547871.1| thiamine biosynthesis lipoprotein [Klebsiella sp. 1_1_55]
 gi|289777894|gb|EFD85891.1| thiamine biosynthesis lipoprotein [Klebsiella sp. 1_1_55]
          Length = 350

 Score = 34.3 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 14/75 (18%)

Query: 16  NLLVLLQDEYEKGKRVSVQCGSERVRDSL-----------NEYLWTWKKDGFL---PHGV 61
              VL         RVSV    E   ++L           +  L TWK D  L    H  
Sbjct: 32  TATVLDGKTMGTFWRVSVIGVDEAKAEALRAKVQAQLDADDRLLSTWKNDSALMRFNHAA 91

Query: 62  DVGDEGDFSSFQPVL 76
           D        +   ++
Sbjct: 92  DTRPWPVSEAMADIV 106


>gi|119776102|ref|YP_928842.1| diguanylate cyclase [Shewanella amazonensis SB2B]
 gi|119768602|gb|ABM01173.1| putative diguanylate cyclase (GGDEF domain protein) [Shewanella
           amazonensis SB2B]
          Length = 557

 Score = 34.3 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 5   LFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVG 64
           LF   +      L     D   +     +   S+R    ++     +++  F PHG  + 
Sbjct: 17  LFAHAQPLTPDELP---GDPLSREWMYFI--ESDRRMSPVDAKA-AFERGRFAPHGKKIP 70

Query: 65  DEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDD 117
             G  +   P+ L +   N + + ++ + + A+    ++  Y     + +  D
Sbjct: 71  SLGIGA--PPLWLALPLQNPSNTDVQLIFELANAWQDELALY-----LFDQSD 116


>gi|283786472|ref|YP_003366337.1| decarboxylase [Citrobacter rodentium ICC168]
 gi|282949926|emb|CBG89551.1| putative decarboxylase [Citrobacter rodentium ICC168]
          Length = 551

 Score = 34.3 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%)

Query: 30  RVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTI 89
           RV++       R  L   L  W  +  + H   +  +G F   QP  +   S  A+   +
Sbjct: 211 RVALLADFLARRFDLQPVLQRWMAETPMAHATLLMGKGLFDEQQPGFVGTYSGGASGEFV 270

Query: 90  RFLVDEASMHIGDVDYY 106
           R  ++ A   I     +
Sbjct: 271 REAIEGADTTICVGTRF 287


>gi|190890343|ref|YP_001976885.1| methyl-accepting chemotaxis protein O-methyltransferase [Rhizobium
           etli CIAT 652]
 gi|190695622|gb|ACE89707.1| methyl-accepting chemotaxis protein O-methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 302

 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 38/126 (30%)

Query: 7   YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66
           + F++  ++ L  LLQ     G RV +               W+               +
Sbjct: 103 HHFEHLRDHVLPELLQRAR-AGGRVRI---------------WS---------AASSDGQ 137

Query: 67  GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE---- 122
             +S    + LT+ SL  N +   F +  A+     +    +        D+ +LE    
Sbjct: 138 EPYS----IALTVLSLMPNVADYDFKI-LATDIDPKILAIARA----GAYDESALETVSP 188

Query: 123 WGRAHW 128
             R  W
Sbjct: 189 AMRKQW 194


>gi|332244193|ref|XP_003271257.1| PREDICTED: cadherin-23-like [Nomascus leucogenys]
          Length = 474

 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 63  VGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKV 109
             D G       V +T+   N N+    F  D A     D    ++V
Sbjct: 232 ADDGGPKVDSTVVYITVLDENDNSPRFDFTSDSAVSVPEDCPVGQRV 278


>gi|218661481|ref|ZP_03517411.1| methyl-accepting chemotaxis protein O-methyltransferase protein
           [Rhizobium etli IE4771]
          Length = 299

 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 38/126 (30%)

Query: 7   YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE 66
           + F++  ++ L  LLQ     G RV +               W+               +
Sbjct: 100 HHFEHLRDHVLPELLQRAR-AGGRVRI---------------WS---------AASSDGQ 134

Query: 67  GDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLE---- 122
             +S    + LT+ SL  N +   F +  A+     +    +        D+ +LE    
Sbjct: 135 EPYS----IALTVLSLMPNVADYDFKI-LATDIDPKILAIARA----GAYDETALETVSP 185

Query: 123 WGRAHW 128
             R  W
Sbjct: 186 AMRKQW 191


>gi|169616252|ref|XP_001801541.1| hypothetical protein SNOG_11296 [Phaeosphaeria nodorum SN15]
 gi|111059884|gb|EAT81004.1| hypothetical protein SNOG_11296 [Phaeosphaeria nodorum SN15]
          Length = 982

 Score = 33.6 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 5/15 (33%), Positives = 10/15 (66%)

Query: 45  NEYLWTWKKDGFLPH 59
           +++LWT     ++PH
Sbjct: 735 DDHLWTTTDTSWIPH 749


>gi|317504649|ref|ZP_07962615.1| beta-galactosidase [Prevotella salivae DSM 15606]
 gi|315664220|gb|EFV03921.1| beta-galactosidase [Prevotella salivae DSM 15606]
          Length = 835

 Score = 33.6 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 25 YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQP 74
          +++G R ++    +    + +++ W       LPH  D   EGDF +  P
Sbjct: 35 WDEGWRFALHNDDKAHETTFDDHAWRVLD---LPH--DWAIEGDFYALNP 79


>gi|300797967|ref|NP_001180070.1| histone deacetylase 7 [Bos taurus]
 gi|297474603|ref|XP_002687361.1| PREDICTED: histone deacetylase 7-like [Bos taurus]
 gi|296487765|gb|DAA29878.1| histone deacetylase 7-like [Bos taurus]
          Length = 988

 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 56  FLPHGVDVGDEGDFSSF-QPVLL 77
           FLPHG++    G   S  QP+LL
Sbjct: 325 FLPHGLEPEAGGPLPSRLQPILL 347


>gi|32473633|ref|NP_866627.1| signal peptide [Rhodopirellula baltica SH 1]
 gi|32444169|emb|CAD74166.1| hypothetical protein-signal peptide and transmembrane prediction
           [Rhodopirellula baltica SH 1]
          Length = 527

 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 10  KNDWEYNLLVLLQDEYEKGKRVSV--QCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG 67
            +  E  L + L  + + GK VS+     S+   + L+   W +++ G  PH + + D  
Sbjct: 425 NHPPEVKLAMPLDLQVQAGKEVSLSAHGSSDPDGNQLSYRWWHYQEAGTFPHTIQIRDAA 484

Query: 68  DFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVF 111
              +      ++        TI  + +        +  Y++VV 
Sbjct: 485 QQDAS----FSVPESARQGETIHLICEVTDNGTPALTRYQRVVI 524


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.166    0.574 

Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,465,114,515
Number of Sequences: 14124377
Number of extensions: 159169519
Number of successful extensions: 430911
Number of sequences better than 10.0: 777
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 428653
Number of HSP's gapped (non-prelim): 1145
length of query: 141
length of database: 4,842,793,630
effective HSP length: 105
effective length of query: 36
effective length of database: 3,359,734,045
effective search space: 120950425620
effective search space used: 120950425620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 76 (33.6 bits)