RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi
[Candidatus Liberibacter asiaticus str. psy62]
(141 letters)
>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer,
clamp-loader, alpha-beta fold, gene regulation; HET:
DNA; 2.10A {Escherichia coli} (A:)
Length = 147
Score = 97.6 bits (243), Expect = 5e-22
Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 13/146 (8%)
Query: 1 MRTLLFYRFKNDWEYNLLV--------LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK 52
M+ FY ND + L + + + GKRV + C E+ L+E LW
Sbjct: 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP 60
Query: 53 KDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFI 112
+ F+PH + PV + +++ + + + +VV
Sbjct: 61 AESFVPHNL---AGEGPRGGAPVEIAWPQKRSSSRRDILISL-RTSFADFATAFTEVVDF 116
Query: 113 INTDDQGSLEWGRAHWRSLKNSGYAP 138
+ +D + R +++ + +G+
Sbjct: 117 VPYEDS-LKQLARERYKAYRVAGFNL 141
>1iuk_A Hypothetical protein TT1466; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; 1.70A {Thermus thermophilus} (A:)
Length = 140
Score = 27.6 bits (61), Expect = 0.74
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 94 DEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
D+ + + + + D R L+ GY
Sbjct: 3 DQELRAY--LSQAKTIAVLGAHKDPSR--PAHYVPRYLREQGY 41
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET:
GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
(A:)
Length = 160
Score = 27.2 bits (60), Expect = 0.82
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 10 KNDW-EYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD 68
+ D+ +Y + V Y + + +N + + V
Sbjct: 65 QGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVN------ENGSWASKTVTAVPNQG 118
Query: 69 FSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107
+ +FQP+ L+A T +R ++ ++D +
Sbjct: 119 WDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFT 157
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG
superfamily; HET: NAG; 3.00A {Homo sapiens} (A:1-108)
Length = 108
Score = 26.8 bits (59), Expect = 1.1
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 28 GKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQ---------PVLLT 78
+ ++ CG + L + W+K+ + + GD + ++ + +
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68
Query: 79 ISSLNA 84
I +L
Sbjct: 69 ILALRP 74
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2,
protein structure initiative, midwest center for
structural genomics; 2.10A {Cytophaga hutchinsonii atcc
33406} (A:)
Length = 122
Score = 25.9 bits (57), Expect = 2.2
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 108 KVVFIINTDDQGSLEWGRAHWRSLKNSGY 136
K + + T + + LK+ G+
Sbjct: 6 KTLILGATPETNR--YAYLAAERLKSHGH 32
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium
sibiricum 255-15} (A:20-131)
Length = 112
Score = 24.6 bits (54), Expect = 5.2
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 2/46 (4%)
Query: 2 RTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEY 47
R L+F + LL L S+ +
Sbjct: 61 RVLIFTPDTERSD--LLASLARYDAWHTPYSIITLGDVTETLERSI 104
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor;
1.81A {Homo sapiens} (A:1-106)
Length = 106
Score = 24.5 bits (53), Expect = 5.9
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 78 TISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIIN 114
N+ +S ++ + D YE +I N
Sbjct: 72 LWFPFNSMSSGVKKEFG------HEFDLYENKDYIRN 102
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding
module, xylose, CCCBM6, glycoside hydrolase; HET: XYP;
1.5A {Clostridium cellulolyticum} (A:)
Length = 129
Score = 24.5 bits (53), Expect = 6.5
Identities = 6/47 (12%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 61 VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYE 107
V GD+ ++ T+S + + S ++ +++++
Sbjct: 81 CPVAGTGDWQTYTDAKCTVS-GVTGKHDVYLVFKGDSGYLFNLNWFT 126
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside
hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE;
1.90A {Bacteroides thetaiotaomicron} PDB: 2wvx_B*
(A:375-479)
Length = 105
Score = 24.4 bits (53), Expect = 7.0
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 91 FLVDEASMHIGDVDY---YEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138
LVD + D YE ++ GR + GY P
Sbjct: 9 ILVDAYXKGVKVDDIKTLYEGLIHGTENVHPEVSSTGRLGYEYYNKLGYVP 59
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 24.1 bits (52), Expect = 8.8
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 29/75 (38%)
Query: 11 NDWEYNLLVLLQDEYEKGKRVSVQCG-SERV-----------RDSLNEY---LW------ 49
DW N L L+ E E+ ER R + ++ +
Sbjct: 41 KDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRI 100
Query: 50 --------TWKKDGF 56
T+ KD +
Sbjct: 101 APLRGALATYSKDSY 115
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase,
hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A
(A:358-657)
Length = 300
Score = 23.7 bits (51), Expect = 9.8
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 14 EYNLLVLLQDEY-EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72
E+N L ++DE+ ++ + + +S Y+ + F E DF +
Sbjct: 17 EFNKLTGIRDEFQKEIINTRDTQ-ARTISESFRSYV-LNLGNTF---------ENDFLRY 65
Query: 73 QPVLLTISSLNANT 86
QP L L++
Sbjct: 66 QPELNLFDFLSSGK 79
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.138 0.431
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,145,937
Number of extensions: 46320
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 16
Length of query: 141
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 61
Effective length of database: 2,251,649
Effective search space: 137350589
Effective search space used: 137350589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)