HHsearch alignment for GI: 254780392 and conserved domain: cd00433
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=100.00 E-value=0 Score=1136.74 Aligned_cols=461 Identities=43% Similarity=0.701 Sum_probs=420.8
Q ss_pred CCEEEEEECCC---CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHH-HHHHH
Q ss_conf 77169996268---663222212388889999998089983678789984378887445999944881558999-99999
Q gi|254780392|r 15 QEGLAILLKTS---FSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFS-WLKAG 90 (494)
Q Consensus 15 ~d~lvV~~~~~---~~~~~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~~~~~~~-~~ra~ 90 (494)
T Consensus 1 ~d~LVvgv~~~~~~l~~~~~~ld~~~~g~l~~ll~~~~~~Gk~Ge~~~l~~~~~-~~~rvllvGLG~~~~~~~~~~r~a~ 79 (468)
T cd00433 1 ADGLVLGVFEGEGGLPPAAEKLDAASSGALAALLKASGFKGKAGETLLLPALGG-GAKRVALVGLGKEEDLDVENLRKAA 79 (468)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 978999998899976889999989734699999974999988688899807999-7477999914874549999999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999853169748994177899998999999999971477754444364333232100013332245773789999999
Q gi|254780392|r 91 GSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVAD 170 (494)
Q Consensus 91 a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 170 (494)
T Consensus 80 a~aa~~l~~~~~~~i~v~~~~---~~~~~~~~aeGa~Lg~Y~f~~yKs~~~~~~~~~-------~~~~~~~~~~~~~~~~ 149 (468)
T cd00433 80 GAAARALKKLGSKSVAVDLPT---LAEDAEAAAEGALLGAYRFDRYKSKKKKTPLLV-------VLELGNDKAAEAALER 149 (468)
T ss_pred HHHHHHHHHCCCCEEEEECCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE-------EEECCCCHHHHHHHHH
T ss_conf 999999854797089992899---589999999999965676101457898887503-------5632675789999999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 9999999998642021254030299999999986-113321000011100013458988742025778506886205788
Q gi|254780392|r 171 IQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD 249 (494)
Q Consensus 171 ~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~ 249 (494)
T Consensus 150 ~~aia~gv~laRdLvn~P~N~ltP~~lA~~a~~la~~~g~~v~Vld~~~l~~~gmg~llaVg~GS~~~p~li~l~y~~~~ 229 (468)
T cd00433 150 GEAIAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKG 229 (468)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCHHHEECCCCCCCCEEEEEEECCCC
T ss_conf 99999999999997448960169999999999986407987999709999875995021010256899717999856888
Q ss_pred CCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 65651266302112006631003333200232211235689999999987087872899864102668999747077630
Q gi|254780392|r 250 SEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVR 329 (494)
Q Consensus 250 ~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~ 329 (494)
T Consensus 230 ~~~~~~~lVGKGitfDsGG~~lKp~~~m~~Mk~Dm~Gaa~v~g~~~a~a~l~~~~~v~~~~~~~EN~~~~~a~rpgDvi~ 309 (468)
T cd00433 230 ASKKPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNVVGVLPLAENMISGNAYRPGDVIT 309 (468)
T ss_pred CCCCCEEEECCEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCCCCCCCCCEEE
T ss_conf 88775588611378516874557734288864232236899999999998589927999986231487888989846588
Q ss_pred CCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 24895888634786640365236788752079613552111200235431776057870898999999998998569717
Q gi|254780392|r 330 SMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLW 409 (494)
Q Consensus 330 ~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~ge~~w 409 (494)
T Consensus 310 ~~~GktvEi~nTDAEGRLvLaD~l~ya~-~~~p~~iiD~ATLTGa~~vaLG~~~~g~~~n~~~l~~~l~~a~~~~ge~~w 388 (468)
T cd00433 310 SRSGKTVEILNTDAEGRLVLADALTYAQ-EFKPDLIIDIATLTGAAVVALGHDYAGLFTNDDELAKQLLAAGEASGERVW 388 (468)
T ss_pred CCCCCEEEEECCCCCHHEEEHHHHHHHH-HCCCCEEEEECCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCCEE
T ss_conf 2799689996688403111145888886-429977776144202110220787679954999999999999998099787
Q ss_pred CCCCCHHHHHHHCCCCCCEECCCCC-CHHHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6776867888617986417018887-46799999999872388-676999400001167888888998654358999999
Q gi|254780392|r 410 RMPMNEEYNKLIESKFADMKNIGGR-GAGSIVAAQFLEKFVQD-ASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEF 487 (494)
Q Consensus 410 ~lPl~~~y~~~~~s~~AD~~n~~~~-~~g~~~aa~fl~~f~~~-~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr~l~~~ 487 (494)
T Consensus 389 ~lPl~~~y~~~l~s~~AD~~N~~~~~~~g~~~aa~FL~~Fv~~~~~W~HlDiAg~a~~~~~~-~~~~g~TG~gvr~l~~~ 467 (468)
T cd00433 389 RLPLWEEYREQLKSDIADLKNIGGRGPAGSITAALFLKEFVGDGIPWAHLDIAGTAWKSKPG-YLPKGATGFGVRLLVEF 467 (468)
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCHHHHHHHHH
T ss_conf 08899888937799836767789899534899999999970989987899767867667899-89998353769999976
Q ss_pred H
Q ss_conf 9
Q gi|254780392|r 488 V 488 (494)
Q Consensus 488 ~ 488 (494)
T Consensus 468 l 468 (468)
T cd00433 468 L 468 (468)
T ss_pred C
T ss_conf 9