Query gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 494
No_of_seqs 253 out of 1989
Neff 7.4
Searched_HMMs 23785
Date Mon May 30 10:38:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780392.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8g_F Cytosol aminopeptidase; 100.0 0 0 1201.2 42.9 485 1-492 1-495 (497)
2 1gyt_A Cytosol aminopeptidase; 100.0 0 0 1197.3 42.4 485 1-491 1-496 (503)
3 3jru_B Probable cytosol aminop 100.0 0 0 1184.5 42.5 477 1-491 1-488 (490)
4 3kzw_A Cytosol aminopeptidase; 100.0 0 0 1140.9 43.0 483 1-491 23-515 (515)
5 3kr4_A M17 leucyl aminopeptida 100.0 0 0 1117.3 41.7 479 3-491 29-520 (528)
6 1lam_A Leucine aminopeptidase; 100.0 0 0 1115.2 38.9 460 15-493 1-484 (484)
7 3ij3_A Cytosol aminopeptidase; 100.0 0 0 1054.2 36.4 445 15-493 35-482 (482)
8 2hc9_A Leucine aminopeptidase 100.0 0 0 940.3 22.8 350 130-493 128-485 (491)
9 2pok_A Peptidase, M20/M25/M40 95.4 0.16 6.7E-06 29.3 13.4 124 175-320 44-187 (481)
10 1q7l_A Aminoacylase-1; catalys 94.8 0.23 9.9E-06 28.0 9.2 120 176-316 11-149 (198)
11 3pfo_A Putative acetylornithin 92.2 0.63 2.6E-05 25.0 10.7 132 175-316 26-180 (433)
12 3ct9_A Acetylornithine deacety 90.1 0.99 4.2E-05 23.6 9.0 122 176-318 12-141 (356)
13 3gb0_A Peptidase T; NP_980509. 89.7 0.88 3.7E-05 24.0 6.3 13 479-491 359-371 (373)
14 2zog_A Cytosolic non-specific 85.3 1.9 7.9E-05 21.7 8.3 129 175-315 20-171 (479)
15 2rb7_A Peptidase, M20/M25/M40 84.8 1.9 8.1E-05 21.6 5.8 40 176-215 7-50 (364)
16 3dlj_A Beta-Ala-His dipeptidas 82.1 2.5 0.00011 20.8 10.3 128 176-315 26-178 (485)
17 2hga_A Conserved protein MTH13 80.8 0.3 1.2E-05 27.3 0.3 56 307-373 27-82 (125)
18 3i18_A LMO2051 protein; alpha- 76.6 0.49 2.1E-05 25.8 0.4 51 307-368 9-59 (100)
19 2ytw_A Serine protease HTRA1; 72.8 1 4.3E-05 23.6 1.2 32 306-337 49-81 (118)
20 2qyv_A XAA-His dipeptidase; YP 69.3 5.3 0.00022 18.5 5.3 14 39-52 35-48 (487)
21 3io1_A Aminobenzoyl-glutamate 67.5 5.8 0.00024 18.2 9.1 21 474-494 414-434 (445)
22 1te0_A Protease DEGS; two doma 61.1 2.9 0.00012 20.3 1.6 31 307-337 246-277 (318)
23 1cg2_A Carboxypeptidase G2; me 60.6 7.6 0.00032 17.4 7.3 126 176-316 20-155 (393)
24 2pzd_A Serine protease HTRA2; 59.9 0.76 3.2E-05 24.4 -1.5 31 307-337 37-68 (113)
25 1y8t_A Hypothetical protein RV 59.5 3.4 0.00014 19.9 1.7 30 308-337 245-275 (324)
26 2joa_A Serine protease HTRA1; 59.4 0.88 3.7E-05 24.0 -1.3 31 307-337 37-68 (105)
27 2p3w_A Probable serine proteas 58.9 0.85 3.6E-05 24.1 -1.4 31 307-337 37-68 (112)
28 2kl1_A YLBL protein; structure 56.8 2 8.5E-05 21.4 0.2 51 307-368 7-57 (94)
29 3cpx_A Aminopeptidase, M42 fam 56.6 6.5 0.00027 17.9 2.8 67 175-245 17-84 (321)
30 2kjp_A Uncharacterized protein 52.9 2.1 8.7E-05 21.4 -0.3 48 310-368 6-53 (91)
31 2dkj_A Serine hydroxymethyltra 46.8 12 0.00052 15.9 6.3 59 342-401 188-251 (407)
32 2zpm_A Regulator of sigma E pr 44.4 1.5 6.3E-05 22.4 -2.1 29 309-337 8-37 (91)
33 2i6v_A General secretion pathw 43.9 1.2 5E-05 23.1 -2.6 29 309-337 23-52 (87)
34 2pos_A Sylvaticin; elicitin, t 42.3 13 0.00054 15.8 2.4 42 265-308 30-74 (94)
35 1ky9_A Protease DO, DEGP, HTRA 36.4 7.9 0.00033 17.3 0.6 31 307-337 288-319 (448)
36 3gux_A Putative Zn-dependent e 34.7 19 0.00079 14.6 7.6 115 183-315 42-162 (314)
37 3lvm_A Cysteine desulfurase; s 34.6 6.1 0.00026 18.0 -0.2 36 387-422 378-414 (423)
38 2gre_A Deblocking aminopeptida 33.8 9.4 0.0004 16.7 0.6 20 389-408 267-286 (349)
39 1lcy_A HTRA2 serine protease; 33.1 3.5 0.00015 19.7 -1.6 30 308-337 259-289 (325)
40 3mru_A Aminoacyl-histidine dip 32.4 20 0.00086 14.4 6.5 17 478-494 473-489 (490)
41 2qcv_A Putative 5-dehydro-2-de 32.2 21 0.00087 14.3 4.2 24 181-204 173-196 (332)
42 3gsl_A Disks large homolog 4; 30.5 9.4 0.0004 16.7 0.2 29 309-337 134-164 (196)
43 3ofq_C 50S ribosomal protein L 30.1 20 0.00085 14.4 1.8 95 236-390 73-167 (271)
44 3ecd_A Serine hydroxymethyltra 29.9 22 0.00094 14.1 9.1 58 342-400 197-259 (425)
45 1vhe_A Aminopeptidase/glucanas 28.8 17 0.00071 14.9 1.2 38 284-321 186-223 (373)
46 1mfg_A ERB-B2 interacting prot 28.7 17 0.00071 15.0 1.2 42 307-356 37-78 (95)
47 1n7t_A 99-MER peptide of densi 28.2 12 0.0005 16.0 0.4 31 307-337 45-75 (103)
48 2i4s_A General secretion pathw 28.0 7.4 0.00031 17.4 -0.7 16 322-337 55-70 (105)
49 1e4c_P L-fuculose 1-phosphate 26.8 25 0.0011 13.7 5.6 59 153-212 156-214 (215)
50 1tkj_A Aminopeptidase, SGAP; d 22.9 30 0.0012 13.2 8.1 66 239-315 65-132 (284)
51 3khx_A Putative dipeptidase sa 22.4 30 0.0013 13.1 7.6 127 176-322 35-182 (492)
52 3hmu_A Aminotransferase, class 21.9 27 0.0011 13.5 1.2 98 189-306 237-351 (472)
53 2hc8_A PACS, cation-transporti 21.7 17 0.00073 14.9 0.2 64 293-375 2-66 (113)
54 2fvg_A Endoglucanase; TM1049, 21.3 11 0.00045 16.4 -1.0 22 388-409 253-274 (340)
55 1l1c_A Transcription antitermi 21.2 28 0.0012 13.4 1.2 13 253-265 20-32 (55)
56 1ed7_A Chitinase A1, (CHBD-CHI 21.1 13 0.00056 15.7 -0.5 22 318-340 4-25 (45)
57 1jbq_A Cystathionine beta-synt 20.6 33 0.0014 12.9 3.1 28 285-312 278-305 (435)
58 1vho_A Endoglucanase; structur 20.6 22 0.00093 14.1 0.5 32 284-315 174-205 (346)
59 1tqx_A D-ribulose-5-phosphate 20.3 33 0.0014 12.9 1.6 10 99-108 29-38 (227)
60 2ego_A General receptor for ph 20.3 11 0.00048 16.2 -1.0 31 308-338 40-71 (96)
61 1qiu_A Adenovirus fibre; fibre 20.1 27 0.0012 13.5 1.0 11 408-418 177-187 (264)
62 1jsx_A Glucose-inhibited divis 20.1 34 0.0014 12.8 2.8 34 295-332 107-140 (207)
63 1x5n_A Harmonin; PDZ domain, u 20.1 27 0.0011 13.5 0.9 52 308-369 44-96 (114)
No 1
>3h8g_F Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-bindi protease; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=100.00 E-value=0 Score=1201.16 Aligned_cols=485 Identities=34% Similarity=0.557 Sum_probs=442.2
Q ss_pred CEEEEEEECCCCCCCCEEEEEECCCCCCC--CCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
Q ss_conf 90699950778776771699962686632--2221238888999999808998367878998437888744599994488
Q gi|254780392|r 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDV--AGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGD 78 (494)
Q Consensus 1 M~mkis~~~~~~~~~d~lvV~~~~~~~~~--~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~ 78 (494)
|++.++.......++|+|+|++.++.... ....+....+.|.+++++.+|+||.||++.++.+.+..++||+|||||+
T Consensus 1 M~i~v~s~~~~~~k~d~LVv~v~e~~~l~~~~~~Ld~~~~g~I~~~lk~~dF~GK~Ge~l~l~~~~g~~a~rIlLVGLGk 80 (497)
T 3h8g_F 1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGK 80 (497)
T ss_dssp CEEEEECSCGGGCCBSCEEEEEEGGGCCCHHHHHHHHHTTTHHHHHHHTCCCCCCTTCEEEECCCTTCSBSCEEEEEEES
T ss_pred CEEEEEECCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
T ss_conf 97899808822324887999978898766899987797768999999708998888988998189987668899997786
Q ss_pred HHHCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 155899-999999999998531697489941778999-----98999999999971477754444364333232100013
Q gi|254780392|r 79 PRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPI-----TKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENI 152 (494)
Q Consensus 79 ~~~~~~-~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~-----~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~ 152 (494)
.++++. +++++++++++.+++.+.+++.+.++.... ....++++++|+.+++|+|++|||+++++.... .+
T Consensus 81 ~~~ls~~~~rka~~~a~~~lk~~~~~~~~i~l~~~~~~~~~~~~~~~~~~aeG~~lg~Y~Fd~yKskk~~~~~l~---~v 157 (497)
T 3h8g_F 81 DEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALK---KV 157 (497)
T ss_dssp SSCBCHHHHHHHHHHHHHHHHHSCCSEEEECCTTCCBTTSCTTTHHHHHHHHHHHHTTCCCCTTCSSCCCCCSCC---EE
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE---EE
T ss_conf 032799999999999999997558861999533245454200599999999999853432234445666655520---24
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH-C-CCCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 33224577378999999999999999986420212540302999999999861-1-332100001110001345898874
Q gi|254780392|r 153 SVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLE-S-LGVAVEILDKEAMHKLGMNALLAV 230 (494)
Q Consensus 153 ~i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l~-~-~gl~v~Vld~~~L~klGMg~llaV 230 (494)
.+..........++.+++++++++||++||||+|+|||+|||++||+++++++ + .+++|+|+|+++|+++|||+||+|
T Consensus 158 ~l~~~~~~~~~~~~~l~~~~aiaegv~lARDLvN~P~N~ltP~~lA~~A~~lak~~~~l~v~Vld~~~l~klGMG~lLaV 237 (497)
T 3h8g_F 158 TLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAV 237 (497)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHCTTEEEEEECHHHHHHTTCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCCEECC
T ss_conf 31235677799999999999999999999852458973358669999999986126826999950798640574302111
Q ss_pred HCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 20257785068862057886565126630211200663100333320023221123568999999998708787289986
Q gi|254780392|r 231 AQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVL 310 (494)
Q Consensus 231 gqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~ 310 (494)
||||.+|||||+|+|+|+++.++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||++++
T Consensus 238 gqGS~~~Prli~l~y~g~~~~~~~i~lVGKGitFDtGG~slKp~~~M~~Mk~DM~GaAaV~g~~~a~a~l~~~~~v~~~~ 317 (497)
T 3h8g_F 238 GQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLL 317 (497)
T ss_dssp HTTSSSCCEEEEEEEECSCTTSCCEEEEEEEEEEECCTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCEEEECCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 57778998345884158877888379976636742676354567773441376756899999999999809696289998
Q ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECC
Q ss_conf 41026689997470776302489588863478664036523678875207961355211120023543177605787089
Q gi|254780392|r 311 ALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANN 390 (494)
Q Consensus 311 ~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~ 390 (494)
|+|||||||+|||||||||+||||||||.||||||||||||+|+|| ++|+|+.|||+|||||||++|||++++|+|+||
T Consensus 318 ~~~eN~~~~~a~~pgdvi~~~~G~tvev~nTDAEGRlvLaD~l~~a-~~~~p~~iid~ATLTga~~~alG~~~~g~~~n~ 396 (497)
T 3h8g_F 318 ACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYA-ERFKPQAVIDIATLTGACIVALGSHTTGLMGNN 396 (497)
T ss_dssp EEEEECCSTTSCCTTEEEECTTSCEEEESCTTCCHHHHHHHHHHHH-GGGCCSEEEEEECCCHHHHHHHTTTSEEEEESC
T ss_pred EEEECCCCCCCCCCCCEEECCCCCEEEEECCCCHHHEEEHHHHHHH-HHHCCCCEEEEECCCCCEEEECCCCCCCEECCC
T ss_conf 7120277888889998327689988985047741330015589999-874987078861141410250378754111486
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 89999999989985697176776867888617986417018887467999999998723886769994000011678888
Q gi|254780392|r 391 DVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKE 470 (494)
Q Consensus 391 ~~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~ 470 (494)
|+|++++++||+.+||++||||||++|+++|+|++|||+|+|+|+||+||||+||+|||+++||+|||||||||.++
T Consensus 397 ~~l~~~~~~a~~~~~e~~w~lPl~~~~~~~~~s~~AD~~n~~~~~~g~~~aa~Fl~~Fv~~~~w~HlDiAg~a~~~~--- 473 (497)
T 3h8g_F 397 DDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISG--- 473 (497)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCCCHHHHGGGCCSSSSEESCCCSSSHHHHHHHHHHTTCTTSCEEEEECTTTSEECS---
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---
T ss_conf 99999999999981898750889889997569932375378989623679999999868998979996677775779---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 8899865435899999999766
Q gi|254780392|r 471 INQSWASGFGVRLLDEFVRAFY 492 (494)
Q Consensus 471 ~~~~g~tg~~vr~l~~~~~~~~ 492 (494)
+.|+|+||||||||+|||+++.
T Consensus 474 ~~~~g~tg~~vr~l~~~l~~~a 495 (497)
T 3h8g_F 474 GKDKGATGRPVPLLTQYLLDRA 495 (497)
T ss_dssp STTCEECCTTHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999952379999999999865
No 2
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=100.00 E-value=0 Score=1197.26 Aligned_cols=485 Identities=34% Similarity=0.550 Sum_probs=438.2
Q ss_pred CEEEEEEECCCCCCCCEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
Q ss_conf 9069995077877677169996268663--22221238888999999808998367878998437888744599994488
Q gi|254780392|r 1 MDIKFSFAKNPSIKQEGLAILLKTSFSD--VAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGD 78 (494)
Q Consensus 1 M~mkis~~~~~~~~~d~lvV~~~~~~~~--~~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~ 78 (494)
|+++++.......++|+|+|++.++... .....+....+.|+++++..+|+||.||++.++.+.+..++||+|||||+
T Consensus 1 M~~~i~~~~~~~~~sd~LVvgV~e~~~l~~~~~~Ld~~~~g~I~~~lk~~~F~GK~Ge~~~l~~~~g~~a~rIlLVGLGk 80 (503)
T 1gyt_A 1 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGK 80 (503)
T ss_dssp CEEEEECCCGGGCCSSCEEEEEETTTEECHHHHHHHTTSSSHHHHHHHHTSCCCCTTCEEEEESCTTCSSSEEEEEECCS
T ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
T ss_conf 96799648812046897999984799778899999798767999999738998886988999689987678899997186
Q ss_pred HHHCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 155899-999999999998531697489941778999----989999999999714777544443643332321000133
Q gi|254780392|r 79 PRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPI----TKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENIS 153 (494)
Q Consensus 79 ~~~~~~-~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~----~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~ 153 (494)
.++++. +++++++++++.+++.+.+++.+.++.... ..+.++++++|+.+++|+|++||+++++...+..... .
T Consensus 81 ~~~~~~~~~r~a~~~a~~~l~~~~~~~~~v~l~~~~~~~~~~~~~~~a~~eG~~l~~Y~f~~yktkk~~~~~~~~~~~-~ 159 (503)
T 1gyt_A 81 ERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMV-F 159 (503)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHSCCSEEEECGGGSCBTTBCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCCCCEEE-E
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCEEECEECCCCCCCCCCCEEEE-E
T ss_conf 021999999999999999987558864999546434466770999999999998625140000355666667631899-7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH-CC--CCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3224577378999999999999999986420212540302999999999861-13--32100001110001345898874
Q gi|254780392|r 154 VTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLE-SL--GVAVEILDKEAMHKLGMNALLAV 230 (494)
Q Consensus 154 i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l~-~~--gl~v~Vld~~~L~klGMg~llaV 230 (494)
...........++.+++++++++||++||||+|+|||+|||++||+++++++ ++ +++|+|+|+++|+++|||+||+|
T Consensus 160 ~~~~~~~~~~~~~~l~~g~aiaegv~lARDLvN~P~N~ltP~~lA~~a~~la~~~~~~v~v~Vld~~~l~~~gmg~llaV 239 (503)
T 1gyt_A 160 NVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAV 239 (503)
T ss_dssp ECSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCEEEEE
T ss_conf 30464204789999999889999999998763699152584469999999987559966999956899753266002554
Q ss_pred HCCCCCCCEEEEEECCCCC-CCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 2025778506886205788-656512663021120066310033332002322112356899999999870878728998
Q gi|254780392|r 231 AQGSSRPPYLAVMKWEGGD-SEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGV 309 (494)
Q Consensus 231 gqGS~~~Prli~l~Y~g~~-~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~ 309 (494)
||||++|||||+|+|+|.+ +.++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||+++
T Consensus 240 g~GS~~pprlI~l~Y~g~~~~~~~~i~LVGKGITFDTGGisLKp~~~M~~MK~DM~GAAaVlg~~~aia~l~~~~~v~~~ 319 (503)
T 1gyt_A 240 GQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGV 319 (503)
T ss_dssp HHTSSSCCEEEEEEEECCCCTTCCCEEEEEEEEEEECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 34678998643255148886667855775261377469976357776343727377579999999999983999659999
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEC
Q ss_conf 64102668999747077630248958886347866403652367887520796135521112002354317760578708
Q gi|254780392|r 310 LALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFAN 389 (494)
Q Consensus 310 ~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n 389 (494)
+|+|||||||+|||||||||+||||||||.||||||||||||+|+|| ++++|+.|||+|||||||++|||++++|+|+|
T Consensus 320 ~~~~EN~~~~~a~~pgDvi~~~~Gktvev~nTDAEGRLvLaD~l~ya-~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n 398 (503)
T 1gyt_A 320 LAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMAN 398 (503)
T ss_dssp EEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHG-GGGCCSEEEEEECCCHHHHHHHTTTSEEEEES
T ss_pred EECHHCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEECHHHHH-HHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCC
T ss_conf 71401277888998988678169978997304764418874388899-87399857863214667897708864457788
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
Q ss_conf 98999999998998569717677686788861798641701888746799999999872388676999400001167888
Q gi|254780392|r 390 NDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469 (494)
Q Consensus 390 ~~~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~ 469 (494)
||+|++++++||+++||++||||||++|+++|||++|||+|+|+|+||+||||+||+|||+++||+|||||||||.+++
T Consensus 399 ~~~~~~~~~~a~~~~ge~~w~lP~~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~FL~~Fv~~~~w~HlDiAg~a~~~~~- 477 (503)
T 1gyt_A 399 HNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGK- 477 (503)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECCCCHHHHGGGCCSSSSEESCCCSTTHHHHHHHHHHTTCTTSCEEEEECTTTSEECGG-
T ss_pred CHHHHHHHHHHHHHHCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-
T ss_conf 6999999999999838944058798889975799861013589996567899999998679979899925777778999-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8889986543589999999976
Q gi|254780392|r 470 EINQSWASGFGVRLLDEFVRAF 491 (494)
Q Consensus 470 ~~~~~g~tg~~vr~l~~~~~~~ 491 (494)
|+|+||||||||+|||+++
T Consensus 478 ---~~g~tG~~vr~l~~~~~~~ 496 (503)
T 1gyt_A 478 ---AKGATGRPVALLAQFLLNR 496 (503)
T ss_dssp ---GCEECCTTHHHHHHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHHHH
T ss_conf ---9995106799999999987
No 3
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=100.00 E-value=0 Score=1184.45 Aligned_cols=477 Identities=34% Similarity=0.530 Sum_probs=430.1
Q ss_pred CEEEEEEECC--CCCCCCEEEEEECCCCCCCC--CCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEC
Q ss_conf 9069995077--87767716999626866322--2212388889999998089983678789984378887445999944
Q gi|254780392|r 1 MDIKFSFAKN--PSIKQEGLAILLKTSFSDVA--GLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGI 76 (494)
Q Consensus 1 M~mkis~~~~--~~~~~d~lvV~~~~~~~~~~--~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGL 76 (494)
|+|+|++.+. .+.++|+|+|++.++.+... ...+....+.|+++++..+|+||.||++.++.+.+..++||+||||
T Consensus 1 m~m~~~i~~~~p~~~~~D~LVIgV~e~~~ls~~~~~Ld~~~~g~l~~~lk~~dF~GK~Ge~l~l~~~~g~~~~rVllVGL 80 (490)
T 3jru_B 1 MALQFTLNQDAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAPRVLVVGL 80 (490)
T ss_dssp CCCEEEEECCCTTTCCSSEEEEEECTTSCBCHHHHHHHHHTTSHHHHHHHHTCSCCSTTCEEEEECCTTCSSSEEEEEEC
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEC
T ss_conf 90599995799330468989999758987788999970986589999998189998889889973899887788999973
Q ss_pred CCHHHCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCCC----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 881558999-999999999985316974899417789999----899999999997147775444436433323210001
Q gi|254780392|r 77 GDPRDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPIT----KAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKEN 151 (494)
Q Consensus 77 G~~~~~~~~-~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~----~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~ 151 (494)
|++++++.+ ++++++++++.++..+.+.+.+.++..... .+.+.++++++.++.|+|++||++++.+.... .
T Consensus 81 Gk~~~ls~~~~r~a~~~a~~~lk~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~y~f~~~k~k~k~~~~~l--~- 157 (490)
T 3jru_B 81 GDAGKFGVAPYLKAIGDATRALKTGAVGTALLTLTELTVKARDAAWNIRQAVTVSDHAAYRYTATLGKKKVDETGL--T- 157 (490)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHSSSSCSEEEECGGGSCCTTCCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCSC--C-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCE--E-
T ss_conf 6735499999999999999998746764699833544421013899999999874421000034446688886440--7-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH-CC-CCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 333224577378999999999999999986420212540302999999999861-13-3210000111000134589887
Q gi|254780392|r 152 ISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLE-SL-GVAVEILDKEAMHKLGMNALLA 229 (494)
Q Consensus 152 ~~i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l~-~~-gl~v~Vld~~~L~klGMg~lla 229 (494)
.+.+... .++.+++++++++|||+||||+|+|||+|||++||+++++++ ++ |++|+|+|+++|+++|||+||+
T Consensus 158 -~i~~~~~----~~~ai~~~~aiaegv~lARDLvN~PaN~ltP~~~A~~a~~la~~~~gl~v~Vld~~~l~k~GMG~lLa 232 (490)
T 3jru_B 158 -TLAIAGD----DARALAVGVATAEGVEFARELGNLPPNYCTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLS 232 (490)
T ss_dssp -EEEEEBC----CHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTSTTEEEEEECHHHHHHTTCHHHHH
T ss_pred -EEEECCH----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCEEEE
T ss_conf -9970632----59999999999999999987417886447965789999987640587279991467751159843787
Q ss_pred HHCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 42025778506886205788656512663021120066310033332002322112356899999999870878728998
Q gi|254780392|r 230 VAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGV 309 (494)
Q Consensus 230 VgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~ 309 (494)
|||||.+|||||+|+|+|+++ ++|++|||||||||||||||||+.+|++||+||||||+|+|+|+++|+|++|+||+++
T Consensus 233 VgqGS~~pPrlI~l~y~g~~~-~~~iaLVGKGiTFDtGGisLKp~~~M~~MK~DM~GAA~V~g~~~a~a~l~~~~nv~~~ 311 (490)
T 3jru_B 233 VARGSANRPRLIVLKWNGGGD-ARPYVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGATVIGTFVATVKAELPINLVVV 311 (490)
T ss_dssp HHHTCSSCCEEEEEEEETTTT-SCCEEEEECEEEEECCTTSCCCSSCGGGGGGGGHHHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred ECCCCCCCCCEEEEEECCCCC-CCCEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 346778898505985059878-8862465233553057624578856888887663789999999999971998569998
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEC
Q ss_conf 64102668999747077630248958886347866403652367887520796135521112002354317760578708
Q gi|254780392|r 310 LALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFAN 389 (494)
Q Consensus 310 ~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n 389 (494)
+|+|||||||+|||||||||+||||||||.||||||||||||+|+||+ +++|+.|||+|||||||++|||++++|+|+|
T Consensus 312 ~~~~EN~~~~~a~~pgDvi~~~~GktvEv~nTDAEGRLvLaD~l~ya~-~~~p~~iiD~ATLTGa~~~alG~~~~g~~~n 390 (490)
T 3jru_B 312 VPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAE-RFNPEALVDVATLTGACMVALGHQTAGLMSK 390 (490)
T ss_dssp EEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHG-GGCCSEEEEEECCCHHHHHHHTTTCEEEEES
T ss_pred EEHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCHHEEEHHHHHHHH-CCCCCEEEEEHHHHHHHHHHCCCCCCCCCCC
T ss_conf 650123778888899885462689655442588303200257899875-0198748873001337886438874156679
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
Q ss_conf 98999999998998569717677686788861798641701888746799999999872388676999400001167888
Q gi|254780392|r 390 NDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469 (494)
Q Consensus 390 ~~~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~ 469 (494)
||+|++++++||+.+||++||||||++|+++|||++|||+|+|+|+||+||||+||+|||+++||+|||||||||.++++
T Consensus 391 ~~~~~~~~~~a~~~~ge~~w~lP~~~~~~~~~~s~~AD~~n~~~~~~g~~~aa~Fl~~fv~~~~w~HlDiag~a~~~~~~ 470 (490)
T 3jru_B 391 HDDLANELLAAGEHVFDRAWRLPLWDEYQGLLDSTFADVYNIGGRWGGAITAGCFLSRFTENQRWAHLDIAGVASDEGKR 470 (490)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECCCCGGGGGGGCCSSSSEESCCCSSCHHHHHHHHHHTTCTTSCEEEEECTTTSBCSSTT
T ss_pred CHHHHHHHHHHHHHHCCCEECCCCCHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 69999999999998489885287988899757993465307998971588999999986899797999777567678999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8889986543589999999976
Q gi|254780392|r 470 EINQSWASGFGVRLLDEFVRAF 491 (494)
Q Consensus 470 ~~~~~g~tg~~vr~l~~~~~~~ 491 (494)
+|+||||||||+|||+++
T Consensus 471 ----~~~tG~~vr~l~~~l~~~ 488 (490)
T 3jru_B 471 ----GMATGRPVGLLTQWLLDR 488 (490)
T ss_dssp ----CCBCCTTHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHH
T ss_conf ----997533099999999975
No 4
>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=0 Score=1140.93 Aligned_cols=483 Identities=28% Similarity=0.461 Sum_probs=439.5
Q ss_pred CEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC--CCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
Q ss_conf 906999507787767716999626866322221--238888999999808998367878998437888744599994488
Q gi|254780392|r 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLS--LIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGD 78 (494)
Q Consensus 1 M~mkis~~~~~~~~~d~lvV~~~~~~~~~~~~~--~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~ 78 (494)
+.|+|+++.....+.|+++|++.+..+...... +....+.+...++...|+++.|+...++.+.....+||++||||+
T Consensus 23 ~a~~~~~n~~~~~~~d~LVIgv~e~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~g~~~~~~~~~~~~~~RIllVGLGk 102 (515)
T 3kzw_A 23 NAMNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTTAFDVQDQTYRLITVGLGN 102 (515)
T ss_dssp CSEEEEESCCCCTTCCEEEEEEESCGGGSCCCEETTEECHHHHHHHHHTTSSCCSBTCEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCC
T ss_conf 40110010001456876999776887654211120045787899998604103765633542035888765699995795
Q ss_pred HHHCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 155899-9999999999985316974899417789999----89999999999714777544443643332321000133
Q gi|254780392|r 79 PRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPIT----KAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENIS 153 (494)
Q Consensus 79 ~~~~~~-~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~----~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~ 153 (494)
.++++. +++++++++++.+++.+.+++.+.++.+... .+.++++++|+.+++|+|++|||+++++..... .
T Consensus 103 ~~~ls~~~~rka~g~i~~~Lk~~~~~~~~i~l~~~~~~~~~~~~~a~~~~~g~~la~Y~Fd~yKskkk~~~~~~i----~ 178 (515)
T 3kzw_A 103 LKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQLSDVLMACGIQSERATYEFDHYKSSKKAPFKTNL----N 178 (515)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTCCSSSCHHHHHHHHHHHHHHTTCCCCTTCTTCCCCCCEEE----E
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE----E
T ss_conf 165799999999999999986379707999877544664259999999999998478214655578987666427----9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 322457737899999999999999998642021254030299999999986-1133210000111000134589887420
Q gi|254780392|r 154 VTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQ 232 (494)
Q Consensus 154 i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgq 232 (494)
+. ... ...++.++++.++++|+|+||||+|+|||+|||++||++++++ ++++++|+|+++++|+++|||+||||||
T Consensus 179 l~--~~~-~~~~~~i~~~~aiaegv~lARdLvN~P~N~ltP~~~a~~a~~~~~~~~~~v~v~~~~~l~~~gmg~~laVg~ 255 (515)
T 3kzw_A 179 LI--SES-LIELDFIHEGISIGQSINLARDFSNMPPNVLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGK 255 (515)
T ss_dssp EE--CSS-CCCCHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHSTTSSCEEEEECHHHHHHTTCHHHHHHHT
T ss_pred EE--CCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCEEEECC
T ss_conf 94--586-677999999999999999999873687512799999999999845576489981399998769934004305
Q ss_pred CCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 25778506886205788656512663021120066310033332002322112356899999999870878728998641
Q gi|254780392|r 233 GSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLAL 312 (494)
Q Consensus 233 GS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~ 312 (494)
||.+|||||+|+|+|.+++++||+|||||||||||||||||+.+|++||+||||||+|+|+|++++++++|+||++++|+
T Consensus 256 GS~~~p~li~l~y~g~~~~~~~i~lVGKGitFDtGG~slKp~~~M~~Mk~DM~GAA~V~g~~~a~a~~~~~~nv~~~~~~ 335 (515)
T 3kzw_A 256 GSKHKPRLVTITYNGKDKDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPVNIVGVLAC 335 (515)
T ss_dssp TSSSCCEEEEEEEESSCSSCCCEEEEEEEEEEECCTTSCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf 67778862587336886677607985364797536737677657434003546678999999999973887664899971
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEE-CCH
Q ss_conf 0266899974707763024895888634786640365236788752079613552111200235431776057870-898
Q gi|254780392|r 313 VENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFA-NND 391 (494)
Q Consensus 313 ~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~-n~~ 391 (494)
||||||++|||||||||+||||||||.||||||||||||+|+|| ++++|+.|||+|||||||++|||.+++|+|+ |||
T Consensus 336 ~eN~~~~~a~~pgdvi~~~~GktvEi~nTDAEGRLvLaDal~ya-~~~~p~~iiD~ATLTGa~~~alG~~~a~~~~~n~~ 414 (515)
T 3kzw_A 336 AENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFYA-NQYQPSVIMDFATLTGAAIVALGDDKAAAFESNSK 414 (515)
T ss_dssp EEECCCTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHH-HTTCCSEEEEEECCCHHHHHHHCTTCEEEEEESCH
T ss_pred HHCCCCCCCCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHH-HCCCCCEEEECHHHHHHHHEEECCCCCCCCCCCHH
T ss_conf 12078888888998678179988998537705766438888764-21399888710644324054017873244126869
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC-CCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 9999999989985697176776867888617-986417018887467999999998723886769994000011678888
Q gi|254780392|r 392 VLAEQLLSSGLSTGELLWRMPMNEEYNKLIE-SKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKE 470 (494)
Q Consensus 392 ~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~-s~~AD~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~ 470 (494)
++++++++||+.+||++||||||++|+++++ |++|||+|+++|+||+||||+||+|||+++||+|||||||||.+++.+
T Consensus 415 ~l~~~~~~a~~~~ge~~w~lPl~~~y~~~~~~S~~ADl~N~~~~~~ga~~aa~FL~~F~~~~~w~HlDiAg~a~~~~~~~ 494 (515)
T 3kzw_A 415 VILNDILQISSEVDEMVFELPITATERASIKHSDIADLVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATTNKASY 494 (515)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCCHHHHHHTTCCSSSSEESCCSSSCHHHHHHHHHHGGGTTSCEEEEECTTTTEESSCBT
T ss_pred HHHHHHHHHHHHHCCCEEECCCCHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf 99999999999868967888899758862717873214799999578799999999847998989997466576688877
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 889986543589999999976
Q gi|254780392|r 471 INQSWASGFGVRLLDEFVRAF 491 (494)
Q Consensus 471 ~~~~g~tg~~vr~l~~~~~~~ 491 (494)
+.|+||||||||||+|||+++
T Consensus 495 ~~~~g~TG~~vr~l~~~l~~~ 515 (515)
T 3kzw_A 495 NGPKGPTGFMIPTIVQWLKQQ 515 (515)
T ss_dssp TBSSEECCTTHHHHHHHHTTC
T ss_pred CCCCCCEEHHHHHHHHHHHCC
T ss_conf 999981554699999999609
No 5
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
Probab=100.00 E-value=0 Score=1117.29 Aligned_cols=479 Identities=30% Similarity=0.437 Sum_probs=421.0
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCCCC---CCCCCCCHHHHHHHH---HCCCCCCCCCCEEEEEC-CCCCCCCEEEEEE
Q ss_conf 6999507787767716999626866322---221238888999999---80899836787899843-7888744599994
Q gi|254780392|r 3 IKFSFAKNPSIKQEGLAILLKTSFSDVA---GLSLIGSPSIVMRAV---SVKNFIGESKSHLNILA-PVDCVWDRLVVAG 75 (494)
Q Consensus 3 mkis~~~~~~~~~d~lvV~~~~~~~~~~---~~~~~~~~~~L~~~i---~~~~F~GK~Ge~l~l~~-~~g~~~~rViLVG 75 (494)
+.+.-.+......+.++|++..+..... ++........+...+ ...+|+||.|++..++. +.+....+|++||
T Consensus 29 ~~v~d~s~~~~~~~~Lviflv~~~~k~~~~~kl~~~~~d~~i~ellk~~~~~~F~GK~Ge~~~~~~~~~~~~~~~I~lVG 108 (528)
T 3kr4_A 29 VQVYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHFYMFNDNKNSVAVGYVG 108 (528)
T ss_dssp EEEEEGGGCBCCCSSEEEEEECCSSSTTCBCCCCSCBSCHHHHHHTSHHHHTTSBCCTTCEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEE
T ss_conf 89985666764677659998557875565600221257067999999734411661358769997138765622899992
Q ss_pred CCCHHHCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 488155899-9999999999985316974899417789999899999999997147775444436433323210001333
Q gi|254780392|r 76 IGDPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISV 154 (494)
Q Consensus 76 LG~~~~~~~-~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i 154 (494)
||+.++++. +++++++++++.+++.+.+++.+.++. .......++++|++.++.|+|++||+++++...... + .+
T Consensus 109 LGk~~el~~~~iRka~a~~~r~Lk~~k~~~i~i~~~~-~~~~~~~~~~~e~~~l~~Y~f~~yKs~k~~~~~~~~-~--~l 184 (528)
T 3kr4_A 109 CGSVADLSEADMKRVVLSLVTMLHDNKLSKLTVVFEI-NVDKNLFRFFLETLFYEYMTDERFKSTDKNVNMEYI-K--HL 184 (528)
T ss_dssp CCSCSSCCHHHHHHHHHHHHHHHTTSCCSEEEEEECS-CCCHHHHHHHHHHHHHHHCCCCTTCSTTCCC-CCCC-S--EE
T ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE-E--EE
T ss_conf 8960228999999999999999986798189997377-775689999999999865556641357766677310-5--88
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 22457737899999999999999998642021254030299999999986-11332100001110001345898874202
Q gi|254780392|r 155 TIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQG 233 (494)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqG 233 (494)
.+........++.+++++++++|+++||||+|+|||+|||++||++++++ ++++++|+|+++++|+++|||+|||||||
T Consensus 185 ~i~~~~~~~~~~~i~~~~~i~~gv~laRdL~n~P~N~ltP~~~a~~a~~la~~~~~~v~vl~~~~l~~~gmg~~laVg~G 264 (528)
T 3kr4_A 185 GVYINNADTYKEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVGKG 264 (528)
T ss_dssp EEEETTGGGTTHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTCEEEEECHHHHHHTTCHHHHHHGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCEEEEECC
T ss_conf 87427808999999999999999999998735896105999999999999987398799965999985799846776247
Q ss_pred CCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEE
Q ss_conf 577850688620578865651266302112006631003--333200232211235689999999987087-87289986
Q gi|254780392|r 234 SSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIK--PSHGMEEMKGDLGGAAAVTGLLHVLAERKA-KINAIGVL 310 (494)
Q Consensus 234 S~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislK--p~~~M~~Mk~DM~GaAav~g~~~aia~l~~-~v~v~~~~ 310 (494)
|.+|||||+|+|+|.++.++||+|||||||||||||||| |+.+|++||+||||||+|+|+|+++|++++ |+||++++
T Consensus 265 S~~pp~~i~l~y~~~~~~~~~i~lVGKGiTFDtGG~slK~~P~~~M~~Mk~DM~GaAaVlg~~~a~a~l~~~~v~v~~~~ 344 (528)
T 3kr4_A 265 SMYPNKFIHLTYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENVEIHFLS 344 (528)
T ss_dssp CSSCCEEEEEEEECSSCCCEEEEEEEEEEEEECCTTSCSCSTTCCGGGGGGGGHHHHHHHHHHHHHHHHCCSSEEEEEEE
T ss_pred CCCCCCHHHHHHCCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 78876203321013567788666556666876588535668622488764444428999999999998435782289973
Q ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECC
Q ss_conf 41026689997470776302489588863478664036523678875207961355211120023543177605787089
Q gi|254780392|r 311 ALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANN 390 (494)
Q Consensus 311 ~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~ 390 (494)
|+||||||++|||||||||+||||||||.||||||||||||+|+|| ++++|+.|||+|||||||++|||+.++|+||||
T Consensus 345 ~~~EN~~~~~a~~pgDVi~~~~GkTvEv~NTDAEGRLvLADal~ya-~~~~p~~iiD~ATLTGa~~~aLG~~~~g~~~n~ 423 (528)
T 3kr4_A 345 AVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYA-EKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNN 423 (528)
T ss_dssp EEEEECCSTTSCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHH-HHTCCSEEEEEECCCTTHHHHTTTTCEEEEESC
T ss_pred HHHHHCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEHHHHHHH-HCCCCCCEEEECCHHHHHHHHCCCCEEEEEECC
T ss_conf 3544067998878998326169967986358852004441388997-542996001102225453622389617999799
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEECCCC-CCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
Q ss_conf 8999999998998569717677686788861798641701888-746799999999872388676999400001167888
Q gi|254780392|r 391 DVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGG-RGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469 (494)
Q Consensus 391 ~~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~~-~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~ 469 (494)
|++++++++||+.+||++||||||++|++++||++|||+|+|+ |+||+||||+||++||+++||+|||||||+|.
T Consensus 424 ~~l~~~l~~a~~~~ge~~W~lPl~~~y~~~lks~~AD~~N~~~~~~~g~itAa~FL~~Fv~~~~W~HlDIAG~a~~---- 499 (528)
T 3kr4_A 424 EELINKILQSSKTSNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGVSWN---- 499 (528)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCCCGGGGGGGCCSSSSEESSCSSCCCHHHHHHHHHHTTCSSSEEEEEECTTTSEE----
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC----
T ss_conf 9999999999998499764089988899766996787416796897331699999997679979798956875888----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8889986543589999999976
Q gi|254780392|r 470 EINQSWASGFGVRLLDEFVRAF 491 (494)
Q Consensus 470 ~~~~~g~tg~~vr~l~~~~~~~ 491 (494)
+.++|+||||||||+|||+++
T Consensus 500 -~~~~g~tG~~vr~l~~~l~~~ 520 (528)
T 3kr4_A 500 -FKARKPKGFGVRLLTEFVLND 520 (528)
T ss_dssp -TTTTEECCTTHHHHHHHHHHC
T ss_pred -CCCCCCCCHHHHHHHHHHHHH
T ss_conf -999896522099999999852
No 6
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E 2j9a_A* 2ewb_A*
Probab=100.00 E-value=0 Score=1115.22 Aligned_cols=460 Identities=33% Similarity=0.506 Sum_probs=404.2
Q ss_pred CCEEEEEECCCCC--CCC------CCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCC---
Q ss_conf 7716999626866--322------22123888899999980899836787899843788874459999448815589---
Q gi|254780392|r 15 QEGLAILLKTSFS--DVA------GLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDAN--- 83 (494)
Q Consensus 15 ~d~lvV~~~~~~~--~~~------~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~~~~~--- 83 (494)
+.+|||.+..+.. ... ...+....+.|.++++..+|+||.||++.++.+. ...+||+|||||+++...
T Consensus 1 T~~LVvGVf~~~~~~~~~~Ls~~a~~lDk~~~G~L~~~lk~~~f~GK~Get~~l~~~~-~~~~rVlLVGLGk~~~~~~~~ 79 (484)
T 1lam_A 1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLH-EDFPSVVVVGLGKKTAGIDEQ 79 (484)
T ss_dssp CEEEEEEECCCCTTCSSCCBCHHHHHHHHHTTTHHHHHHHHTCSCCCTTCEEEEEEEE-TTEEEEEEEECCCTTCCEETT
T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCEEEEECCC-CCCCEEEEEECCCCCCCCCHH
T ss_conf 9439999963677776666598999999982549999997279998878779973799-987889999688753357878
Q ss_pred ------HH-HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------99-99999999998531697489941778999989999999999714777544443643332321000133322
Q gi|254780392|r 84 ------FS-WLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTI 156 (494)
Q Consensus 84 ------~~-~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i~~ 156 (494)
.+ .+++.++.++.+.......+.+... +.+++++||+.|++|+|++||++++.... ..+
T Consensus 80 ~~~~~~~~~~r~a~~~~~k~l~~~~~~~~~~~~~------~~a~a~aeG~~Lg~Y~F~~ykskkk~~~~--------~~~ 145 (484)
T 1lam_A 80 ENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPC------GDAQAAAEGAVLGLYEYDDLKQKRKVVVS--------AKL 145 (484)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHTTCSEEEECCT------TCHHHHHHHHHHHHCCCCTTCSSCCCCCE--------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCH------HHHHHHHHHHHHCCCCCCCCCCCCCCCEE--------EEC
T ss_conf 9999999999999999999874267751223947------99999999999677104644566664101--------322
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHH--HCCCCCCHHHHHHHHHHHCC
Q ss_conf 457737899999999999999998642021254030299999999986-113321000--01110001345898874202
Q gi|254780392|r 157 VTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEI--LDKEAMHKLGMNALLAVAQG 233 (494)
Q Consensus 157 ~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~V--ld~~~L~klGMg~llaVgqG 233 (494)
. ....++.+++++++++|+++||||+|+|||+|||++|+++++++ ++++++|+| +++++|+++|||+||+||||
T Consensus 146 ~---~~~~~~~~~~~~~i~~gv~laRdL~n~P~N~ltP~~~a~~a~~~~~~~~~~v~v~~~~~~~l~~~gmg~~laVg~G 222 (484)
T 1lam_A 146 H---GSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKG 222 (484)
T ss_dssp S---SSSCHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHTT
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEEEEEECC
T ss_conf 5---7167999999999999999999864479612298999999999987528715650466999984599705776126
Q ss_pred CCCCCEEEEEECCCCCC-CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 57785068862057886-56512663021120066310033332002322112356899999999870878728998641
Q gi|254780392|r 234 SSRPPYLAVMKWEGGDS-EEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLAL 312 (494)
Q Consensus 234 S~~~Prli~l~Y~g~~~-~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~ 312 (494)
|.+|||||+|+|+|.++ +++||+|||||||||||||||||+.+|++||+||||||+|+|+|++++++++|+||++++|+
T Consensus 223 S~~~P~li~l~y~g~~~~~~~~i~lVGKGiTFDtGG~sLKp~~~M~~Mk~DM~GAA~v~g~~~a~a~~~~~~~v~~~~~~ 302 (484)
T 1lam_A 223 SEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPL 302 (484)
T ss_dssp SSSCCEEEEEEEECSSSTTSCCEEEEECEEEEECCTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CCCCCCEEEEEECCCCCCCCCCEEEECCCEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 77897246885047655567877996362265058867688767444220131258999999999983699766999973
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHH
Q ss_conf 02668999747077630248958886347866403652367887520796135521112002354317760578708989
Q gi|254780392|r 313 VENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDV 392 (494)
Q Consensus 313 ~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~ 392 (494)
||||||++|||||||||+||||||||.||||||||||||+|+|| ++++|+.|||+|||||||++|||++++|+|+|||+
T Consensus 303 ~eN~~~~~a~~pgDvi~~~~G~tvEi~nTDAEGRLvLaDal~ya-~~~~p~~iiD~ATLTGa~~~alG~~~~g~~~n~~~ 381 (484)
T 1lam_A 303 CENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSW 381 (484)
T ss_dssp EEECCSTTSCCTTEEEECTTSCEEEESCTTCCHHHHHHHHHHHH-HTTCCSEEEEEECCCHHHHHHHTTSCEEEEESCHH
T ss_pred EECCCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEHHHHHHH-HHCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 52367888888997788469954233237865336750277886-50398514421213010316268863222038899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHH-HHCCCCCCEECCCC-CCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 999999989985697176776867888-61798641701888-7467999999998723886769994000011678888
Q gi|254780392|r 393 LAEQLLSSGLSTGELLWRMPMNEEYNK-LIESKFADMKNIGG-RGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKE 470 (494)
Q Consensus 393 ~~~~~~~a~~~~ge~~w~lPl~~~y~~-~~~s~~AD~~n~~~-~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~ 470 (494)
+++++++||+++||++||||||++|.+ .++|++|||+|+++ |+||+|+||+||+|||+++||+|||||||+|.+++++
T Consensus 382 l~~~~~~a~~~~ge~~w~lPl~~~y~~~~~~s~~AD~~N~~~~~~~g~~~aa~FL~~Fv~~~~w~HlDiAg~a~~~~~~~ 461 (484)
T 1lam_A 382 LWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVP 461 (484)
T ss_dssp HHHHHHHHHHHHSCCEEECCCCHHHHHHHHCCSSSSEESSCSSSTTHHHHHHHHHHTTCCCSSEEEEECGGGSEESSSST
T ss_pred HHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf 99999999998189754588966676765399603102799689826569999999758997979997773362689876
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 88998654358999999997668
Q gi|254780392|r 471 INQSWASGFGVRLLDEFVRAFYE 493 (494)
Q Consensus 471 ~~~~g~tg~~vr~l~~~~~~~~~ 493 (494)
|.|+|+||||||||+|||+++-+
T Consensus 462 ~~~~g~tG~~vr~l~~~l~~~~~ 484 (484)
T 1lam_A 462 YLRKGMAGRPTRTLIEFLFRFSQ 484 (484)
T ss_dssp TSCSEECCTTHHHHHHHHHHHHC
T ss_pred CCCCCEEEHHHHHHHHHHHHHCC
T ss_conf 89998060219999999998619
No 7
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=100.00 E-value=0 Score=1054.24 Aligned_cols=445 Identities=30% Similarity=0.463 Sum_probs=383.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHHHHHHHHHHH
Q ss_conf 77169996268663222212388889999998089983678789984378887445999944881558999999999999
Q gi|254780392|r 15 QEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIA 94 (494)
Q Consensus 15 ~d~lvV~~~~~~~~~~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~~~~~~~~~ra~a~~~ 94 (494)
.+.+.|.+........ . ...++..++.|++.++|+||.||++.+|.+.|. .+.+|||+|+.++. ...++++
T Consensus 35 ~~~ipi~~v~~~~l~~-W-l~~l~~~~~~wL~a~gF~GK~Gevl~lP~~~G~--l~~VLvGlG~~~~~-----~~~a~la 105 (482)
T 3ij3_A 35 KNFIPIQPMMPDELPD-W-LDTQDARTQQWVKASGFVGLAGTICSIPESTGA--LQRVLLGVSDYEYS-----WDFGGLS 105 (482)
T ss_dssp TTCEEEEEECGGGHHH-H-HTTSCHHHHHHHHHHTCCCCTTCEEEEECTTSS--EEEEEEECSSTTCC-----GGGGGHH
T ss_pred CCCCEEEEECHHHHHH-H-HHHCCHHHHHHHHHCCCCCCCCCEEEEECCCCC--EEEEEEEECCCCHH-----HHHHHHH
T ss_conf 9853079977715999-9-882999999999977997888988999888898--75899997885126-----6799999
Q ss_pred HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98531697489941778999989999999999714777544443643332321000133322457737899999999999
Q gi|254780392|r 95 SYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSV 174 (494)
Q Consensus 95 ~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ai 174 (494)
++| ......+.... ......++++++|+.|++|+|++||++++.... +.+. ....++.+++
T Consensus 106 ~~L---pag~~~L~~~~-~~~~~~~~~~alG~~Lg~Y~Fd~YKsk~~~~~~--------l~~~-------~~~~~~~~ai 166 (482)
T 3ij3_A 106 KVL---PPGAFQLNRDD-FEDDEYYERALLAFGLGSYQFNAYRKRSPYLAK--------LFLP-------QAHRKRVTDW 166 (482)
T ss_dssp HHC---CSEEEECCGGG-SSSHHHHHHHHHHHHHTTCCCCSSSCCCCCSEE--------EECC-------HHHHHHHHHH
T ss_pred HHC---CCCCEEECCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE--------EECC-------HHHHHHHHHH
T ss_conf 747---66748933578-888899999999999668136866677866545--------7546-------6448999999
Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 999998642021254030299999999986-1133210000111000134589887420257785068862057886565
Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQ 253 (494)
Q Consensus 175 aegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~ 253 (494)
++|+++||||+|+|||+|||++|+++++++ ++++++++|+++++++ +|||+|++|||||.+|||||+|+|++. +.+
T Consensus 167 aegv~laRDLvNtPaN~ltP~~la~~a~~la~~~~~~~~v~~~~~~e-~g~~~i~aVg~gS~~~p~li~l~y~~~--~~~ 243 (482)
T 3ij3_A 167 LTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLE-TEFPAIYAVGRAGSRPPLLIDLKWGDI--KAP 243 (482)
T ss_dssp HHHHHHHHHHHHSCGGGSSHHHHHHHHHHHHHHHTCEEEEEEHHHHH-HHCHHHHHHHTTSSSCCEEEEEEESCT--TSC
T ss_pred HHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCEEEECCHHHHH-CCCCCEEEECCCCCCCCEEEEEECCCC--CCC
T ss_conf 99999999872699411699999999999764059559984589987-069856643056788982899714888--887
Q ss_pred CEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC
Q ss_conf 12663021120066310033332002322112356899999999870878728998641026689997470776302489
Q gi|254780392|r 254 PLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSG 333 (494)
Q Consensus 254 piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G 333 (494)
||+|||||||||||||||||+.+|++||+||||||+|+|+|++++++++|+||++++|+|||||||+|||||||||+|||
T Consensus 244 ~i~LVGKGvtFDtGGl~lKp~~~M~~MK~DM~GAA~vlg~~~aia~~~l~v~v~~~~p~~EN~~~~~a~rPgDVi~~~~G 323 (482)
T 3ij3_A 244 KVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRAR 323 (482)
T ss_dssp EEEEEECEEEEECCTTSCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTCCCTTCEEECTTS
T ss_pred EEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCCCCCCCCCEEECCCC
T ss_conf 17983572597258866778857565541216899999999999982789549999852532889888889886784688
Q ss_pred CEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 58886347866403652367887520796135521112002354317760578708989999999989985697176776
Q gi|254780392|r 334 QTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPM 413 (494)
Q Consensus 334 ~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~ge~~w~lPl 413 (494)
|||||.||||||||||||+|+||+ +++|+.|||+|||||||++|||.+++|+|+|||++++++++||+.+||++|||||
T Consensus 324 ~tvEi~nTDAEGRLvLaDal~ya~-~~~p~~iiD~ATLTGa~~~AlG~~~~~~~~n~~~l~~~l~~a~~~~~e~~W~lPl 402 (482)
T 3ij3_A 324 KTIEITNTDAEGRVVLADALAEAV-KEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKTDDPLWRLPL 402 (482)
T ss_dssp CEEECSCTTCCHHHHHHHHHHHHH-TTCCSEEEEEEECCSGGGCTTCTTSCEEEESSHHHHHHHHHHHHHHTCCCEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHH-HCCCCEEEEEHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 675530588225520134887876-1399744420001012427506886554158499999999999970897866889
Q ss_pred CHHHHHHHCCCCCCEECCC-CCCHHHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8678886179864170188-8746799999999872388-6769994000011678888889986543589999999976
Q gi|254780392|r 414 NEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQD-ASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAF 491 (494)
Q Consensus 414 ~~~y~~~~~s~~AD~~n~~-~~~~g~~~aa~fl~~f~~~-~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr~l~~~~~~~ 491 (494)
|++|+++|+|++|||+|++ +|+||+||||+||++||++ +||+||||||+ +.+++++.|+|+||||||||++||+++
T Consensus 403 ~~~y~~~l~S~~AD~~N~~~~~~~g~i~Aa~FL~~Fv~~~~~W~HlDiag~--~~~~~~~~~~G~tg~gvr~l~~~l~~~ 480 (482)
T 3ij3_A 403 FQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDIFAW--NLEDLPGRPIGGEAMALRAVFHYLEQQ 480 (482)
T ss_dssp CGGGGGGGCCSSSSEESSCSSSSCHHHHHHHHHHTTSCTTSCEEEEEECCE--ESSCBTTBCSEECCCSHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 888896779962100379988995038999999971589959698963677--799999998987258999999999986
Q ss_pred CC
Q ss_conf 68
Q gi|254780392|r 492 YE 493 (494)
Q Consensus 492 ~~ 493 (494)
|.
T Consensus 481 ~~ 482 (482)
T 3ij3_A 481 YR 482 (482)
T ss_dssp HC
T ss_pred CC
T ss_conf 39
No 8
>2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics, PSI, protein structure initiative; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=100.00 E-value=0 Score=940.27 Aligned_cols=350 Identities=30% Similarity=0.519 Sum_probs=316.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCC
Q ss_conf 777544443643332321000133322457737899999999999999998642021254030299999999986-1133
Q gi|254780392|r 130 TYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLG 208 (494)
Q Consensus 130 ~Y~Fd~yKskk~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~g 208 (494)
.|.|+.|..|....... .+.+.+... ....+.+++.++++++|++||||+|+|||+|||++|+++++++ +++|
T Consensus 128 ar~~~~y~~kt~~~~~~----~~~~~~~~~--~~~~~~~~~~~~iae~v~lar~Lvn~P~N~l~p~~~a~~a~~~~~~~g 201 (491)
T 2hc9_A 128 ARTFCKFSMKTSGIREL----NVNIDVVCD--KLTNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNATG 201 (491)
T ss_dssp HTTSCCCCCCSSCCCCC----EEEEEEECT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCCCC----CEEEEEECC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCC
T ss_conf 85202111334677776----404898558--687889999999999999999987588331499999999999775549
Q ss_pred CCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 21000011100013458988742025778506886205788656512663021120066310033332002322112356
Q gi|254780392|r 209 VAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAA 288 (494)
Q Consensus 209 l~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaA 288 (494)
++|+|+++++|+++|||+|++|||||.+|||||+|+|+|.++ ++||+|||||||||||||||||+.+|++||+||||||
T Consensus 202 ~~v~v~~~~~l~~~gmg~~laVgkgS~~pP~lv~l~y~~~~~-~~~ialVGKGitfDtGGlslK~~~~M~~MK~DM~GAA 280 (491)
T 2hc9_A 202 SKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHEVPGS-TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAA 280 (491)
T ss_dssp CEEEEEETHHHHHHTCHHHHHHHTTSSSCCEEEEEEECCTTC-SCEEEEEEEEEEEECCTTSCCCTTTSTTGGGGGHHHH
T ss_pred CEEEEEEHHHHHHCCCCCHHHHHCCCCCCCEEEEEEECCCCC-CCCEEEEECCEEECCCCCCCCCHHHHHHHHCCCCCHH
T ss_conf 989997099998749975267742678998599999668998-7755997056075357646767042898760224168
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEE
Q ss_conf 89999999987087872899864102668999747077630248958886347866403652367887520796135521
Q gi|254780392|r 289 AVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDL 368 (494)
Q Consensus 289 av~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ 368 (494)
+|+|+|++++++++|+||++++|+||||||++|||||||||+||||||||.||||||||||||+|+||+++|+|+.|||+
T Consensus 281 aVlg~~~a~a~~~~~vnv~~ilpl~EN~ig~~A~rPgDVit~~nGkTVEI~NTDAEGRLVLADaL~YA~~~~~p~~IIDi 360 (491)
T 2hc9_A 281 GMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDM 360 (491)
T ss_dssp HHHHHHHHHHTTTCCSEEEEEEEEEEECCSTTSCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCCEEEHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999998557855999987763577888888888778689977776247754304444789998764387514553
Q ss_pred CCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHHCCCCCCEECCC-CCCH--HHHHHHHH
Q ss_conf 112002354317760578708989999999989985697176776867-8886179864170188-8746--79999999
Q gi|254780392|r 369 ATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEE-YNKLIESKFADMKNIG-GRGA--GSIVAAQF 444 (494)
Q Consensus 369 ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~ge~~w~lPl~~~-y~~~~~s~~AD~~n~~-~~~~--g~~~aa~f 444 (494)
|||||||++|||..++|+|||||++++++++||+.+||++||||+|++ |+++++|++|||+|++ +|.+ ++++||+|
T Consensus 361 ATLTGA~~vAlG~~~agv~sN~e~l~~~l~~ag~~~ge~~w~lPl~~e~~~~~~kS~vAD~~N~~~~r~~ga~s~~Aa~F 440 (491)
T 2hc9_A 361 ATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLL 440 (491)
T ss_dssp ECCCTTHHHHHTTTSEEEEESCHHHHHHHHHHHHHHSCCEEECCCCHHHHGGGGCCSSSSEESCCSSCCSSCHHHHHHHH
T ss_pred EHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 00101467645875699971889999999999998288440288994778875798055232578999884789999999
Q ss_pred HHHHC---CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98723---88676999400001167888888998654358999999997668
Q gi|254780392|r 445 LEKFV---QDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAFYE 493 (494)
Q Consensus 445 l~~f~---~~~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr~l~~~~~~~~~ 493 (494)
|++|+ +++||+|||||||+|. ++++||||||||++|+++|..
T Consensus 441 l~~fv~~~~~~~W~HlDIAg~a~~-------~~~aTG~gv~ll~~ll~~~s~ 485 (491)
T 2hc9_A 441 IGAHIGFGEGLRWLHLDIAAPAEV-------GDRGTGYGPALFSTLLGKYTS 485 (491)
T ss_dssp HHTTTGGGTTSEEEEEECTTTTEE-------TTEECCCSHHHHHHHHGGGSS
T ss_pred HHHHCCCCCCCCEEEEEEEECCCC-------CCCCCCCCHHHHHHHHHHCCC
T ss_conf 997448789998699980010478-------989502609999999986288
No 9
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural genomics, PSI-2; HET: BGC; 1.90A {Streptococcus pneumoniae TIGR4}
Probab=95.42 E-value=0.16 Score=29.25 Aligned_cols=124 Identities=15% Similarity=0.236 Sum_probs=80.9
Q ss_pred HHHHHHHHHHCCCCC---EEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 999998642021254---03029999999998-61133210000111000134589887420257785068862057886
Q gi|254780392|r 175 VKGVNLARDIINEPA---NVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS 250 (494)
Q Consensus 175 aegv~lARDLvN~Pa---N~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~ 250 (494)
.+-+.+-|+|++-|+ +.......|+..++ |++.|+++++.+.. +.+.|+.++.+..+
T Consensus 44 ~~~l~~L~~Lv~i~Svs~~~~g~~~~a~~l~~~l~~~G~~v~~~e~~-------------------~~~~via~~~~~~~ 104 (481)
T 2pok_A 44 QHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESY-------------------TAPFVMAHFKSSRP 104 (481)
T ss_dssp HHHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTTCEEEEECSS-------------------SSCEEEEEECCSST
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-------------------CCCEEEEEECCCCC
T ss_conf 99999999996899979671169999999999999779979999669-------------------99889999678889
Q ss_pred CCCCEEEEECCEEECCCCCC---CCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECC
Q ss_conf 56512663021120066310---033-----------3320023221123568999999998708--7872899864102
Q gi|254780392|r 251 EEQPLAFIGKGVVFDTGGIS---IKP-----------SHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVE 314 (494)
Q Consensus 251 ~~~piaLVGKGvTFDtGGis---lKp-----------~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~E 314 (494)
+.++|.|.|--=|-.-|..+ -.| +.|-.+| ++|.|+.+.+++++.+.+ ++.+++.++..-|
T Consensus 105 ~~~~lll~gH~DvVP~~~~~~W~~~PF~~~i~dg~lyGRG~~D~---Kg~~aa~l~Al~~l~~~~~~~~~~i~~~~~~dE 181 (481)
T 2pok_A 105 DAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDD---KGHITARLSALRKYMQHHDDLPVNISFIMEGAE 181 (481)
T ss_dssp TCCEEEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTTTT---HHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCG
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEEECCHHHH---HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 99989998578852899976666899447987999994644554---565999999999976202578862455202443
Q ss_pred CCCCCC
Q ss_conf 668999
Q gi|254780392|r 315 NMPGSS 320 (494)
Q Consensus 315 N~~~~~ 320 (494)
-+-+..
T Consensus 182 E~~~~~ 187 (481)
T 2pok_A 182 ESASTD 187 (481)
T ss_dssp GGTTTT
T ss_pred CCCCCC
T ss_conf 334331
No 10
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=94.80 E-value=0.23 Score=28.05 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=67.8
Q ss_pred HHHHHHHHHCCCCCEEECH--HHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
Q ss_conf 9999864202125403029--999999998-6113321000011100013458988742025778506886205788656
Q gi|254780392|r 176 KGVNLARDIINEPANVLGT--DEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEE 252 (494)
Q Consensus 176 egv~lARDLvN~PaN~ltP--~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~ 252 (494)
+.+.+.|+|+.-|.-.-+| ...++..++ |++.|+++++++-.. |. ..++.+|.|.++..
T Consensus 11 ~~v~~l~~lv~IpS~sp~~~e~~~~~~l~~~l~~~G~~~~~~~~~~----g~--------------~~vv~~~~g~~~~~ 72 (198)
T 1q7l_A 11 PSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAP----GY--------------VVTVLTWPGTNPTL 72 (198)
T ss_dssp HHHHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHTCEEEEEEEET----TE--------------EEEEEEECCSSTTS
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC----CC--------------EEEEEEEECCCCCC
T ss_conf 9999999996889999593799999999999998799289997389----96--------------58999971689988
Q ss_pred CCEEEEECCEEECCCC--CCCCC------------CCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCC
Q ss_conf 5126630211200663--10033------------3320023221123568999999998708--787289986410266
Q gi|254780392|r 253 QPLAFIGKGVVFDTGG--ISIKP------------SHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENM 316 (494)
Q Consensus 253 ~piaLVGKGvTFDtGG--islKp------------~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~ 316 (494)
++|.|.|-==|-.-+. ..--| +.|..+|| +|-|+.+.+++++.+.+ ++.+|+.+.-..|-.
T Consensus 73 ~~ill~gH~DtVp~~~~~W~~~Pf~~~~~~dg~lyGrGa~D~K---g~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~ 149 (198)
T 1q7l_A 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMK---CVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEV 149 (198)
T ss_dssp CEEEEEEECCBCCCCGGGCSSCTTTCCBCTTSEEECTTTTTTH---HHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGG
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCC---CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 8799981465127765577358963179528967735866675---0099999999999984899996589999857100
No 11
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}
Probab=92.19 E-value=0.63 Score=25.03 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCC--CCCCE-EEEEECCCCCC
Q ss_conf 99999864202125403029999999998-6113321000011100013458988742025--77850-68862057886
Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGS--SRPPY-LAVMKWEGGDS 250 (494)
Q Consensus 175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS--~~~Pr-li~l~Y~g~~~ 250 (494)
.+-+.+.|+|+.-|+---.....++...+ |++.|++++.++-.+..-.... ...... ....+ -|+.++.|.+
T Consensus 26 ~~~i~~l~~lv~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nvia~~~g~~- 101 (433)
T 3pfo_A 26 NDQVAFLQRMVQFRSVRGEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHP---KAAPMDTIDPAGSMQVVATADSDG- 101 (433)
T ss_dssp HHHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCEEEEEETGGGTGGGST---TCCCCTTCCGGGCEEEEEEECCCC-
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCC---CCCCCCCCCCCCCEEEEEEECCCC-
T ss_conf 9999999999679999976589999999999978992799842652000134---455544436788516999977899-
Q ss_pred CCCCEEEEECCEEECC---CCC----------CCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEE
Q ss_conf 5651266302112006---631----------0033----33200232211235689999999987087--872899864
Q gi|254780392|r 251 EEQPLAFIGKGVVFDT---GGI----------SIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLA 311 (494)
Q Consensus 251 ~~~piaLVGKGvTFDt---GGi----------slKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~ 311 (494)
..++|.|.| -+|+ |.. .++. +.|-.+|| +|.|+.+.+++++.+.+. +.+|+.+..
T Consensus 102 ~~~~ill~~---H~DvVp~g~~~~W~~dPf~~~~~~g~lyGrG~~D~K---g~~a~~l~al~~l~~~~~~~~~~i~~~~~ 175 (433)
T 3pfo_A 102 KGRSLILQG---HIDVVPEGPVDLWSDPPYEAKVRDGWMIGRGAQDMK---GGVSAMIFALDAIRTAGYAPDARVHVQTV 175 (433)
T ss_dssp CSCCEEEEE---ECCBCCCCCGGGCSSCTTTCCEETTEEECTTTTTTH---HHHHHHHHHHHHHHHTTEEESSCEEEEEE
T ss_pred CCCEEEEEC---CCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCC---HHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 999899987---765478997211457997453788768806875575---16999999999986416676774688776
Q ss_pred ECCCC
Q ss_conf 10266
Q gi|254780392|r 312 LVENM 316 (494)
Q Consensus 312 ~~EN~ 316 (494)
.-|-.
T Consensus 176 ~dEE~ 180 (433)
T 3pfo_A 176 TEEES 180 (433)
T ss_dssp SCTTT
T ss_pred ECCCC
T ss_conf 35554
No 12
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20/M25/M40, structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.07 E-value=0.99 Score=23.64 Aligned_cols=122 Identities=14% Similarity=0.208 Sum_probs=56.4
Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHH-CCCCCCCEEEEEECC---CCCC
Q ss_conf 9999864202125403029999999998-6113321000011100013458988742-025778506886205---7886
Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVA-QGSSRPPYLAVMKWE---GGDS 250 (494)
Q Consensus 176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVg-qGS~~~Prli~l~Y~---g~~~ 250 (494)
+.+.+-|+|+.-|.=--.....++...+ |++.|++++.. +.+ +..+. .++...|.++...+- |...
T Consensus 12 e~v~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~v~~~--------~~~-~~~~~~~~~~~~p~ill~~H~DtVp~~~ 82 (356)
T 3ct9_A 12 EAVSLLKSLISIPSISREETQAADFLQNYIEAEGMQTGRK--------GNN-VWCLSPMFDLKKPTILLNSHIDTVKPVN 82 (356)
T ss_dssp HHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCCEEEE--------TTE-EEEECSSCCTTSCEEEEEEECCBCCCC-
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE--------CCC-EEEEEECCCCCCCEEEEECCCCCCCCCC
T ss_conf 9999999994799999788999999999999779857983--------698-7999854789998699983588678876
Q ss_pred --CCCCEE-EEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf --565126-63021120066310033332002322112356899999999870878728998641026689
Q gi|254780392|r 251 --EEQPLA-FIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPG 318 (494)
Q Consensus 251 --~~~pia-LVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~ 318 (494)
...|.. -+-.|.-| +.|-.+| +++.|+++.+++.+.+.+++.+++.++..-|-..+
T Consensus 83 ~w~~~Pf~~~~~~~~i~---------grG~~D~---k~~~a~~l~a~~~l~~~~~~~~i~~~~~~~ee~~g 141 (356)
T 3ct9_A 83 GWRKDPFTPREENGKLY---------GLGSNDA---GASVVSLLQVFLQLCRTSQNYNLIYLASCEEEVSG 141 (356)
T ss_dssp ------CCCEECSSEEE---------STTTTTT---HHHHHHHHHHHHHHTTSCCSSEEEEEEECCGGGTC
T ss_pred CCCCCCCCCEEECCEEE---------ECCCCCC---CCHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCC
T ss_conf 76578875658689999---------5776776---34699999999987651443025641216402324
No 13
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M40, structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=89.66 E-value=0.88 Score=23.99 Aligned_cols=13 Identities=8% Similarity=0.094 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 3589999999976
Q gi|254780392|r 479 FGVRLLDEFVRAF 491 (494)
Q Consensus 479 ~~vr~l~~~~~~~ 491 (494)
..++++.+++++.
T Consensus 359 ~~~~~~~~~i~~l 371 (373)
T 3gb0_A 359 KTAELVVAIIEEV 371 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999996
No 14
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*
Probab=85.25 E-value=1.9 Score=21.68 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=73.8
Q ss_pred HHHHHHHHHHCCCCCEEECH------HHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 99999864202125403029------999999998-61133210000111000134589887420257785068862057
Q gi|254780392|r 175 VKGVNLARDIINEPANVLGT------DEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEG 247 (494)
Q Consensus 175 aegv~lARDLvN~PaN~ltP------~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g 247 (494)
.+-+.+-++|+.-|+=--.| ...++...+ +++.|+++++++-.... +..++..+-+.+++-|.|
T Consensus 20 ~~~v~~L~~li~ipSvs~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~g 90 (479)
T 2zog_A 20 DRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQK---------LPDGSEIPLPPILLGKLG 90 (479)
T ss_dssp HHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEE---------CTTSCEEECCCEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC---------CCCCCCCCCCCEEEEEEC
T ss_conf 99999999997789859397665899999999999999769949999457644---------666666788757999967
Q ss_pred CCCCCCCEEEEECCEEECCCC--------CCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEE
Q ss_conf 886565126630211200663--------10033------33200232211235689999999987087--872899864
Q gi|254780392|r 248 GDSEEQPLAFIGKGVVFDTGG--------ISIKP------SHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLA 311 (494)
Q Consensus 248 ~~~~~~piaLVGKGvTFDtGG--------islKp------~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~ 311 (494)
..+..++|.|.|--=|--.|. .+.+- +.|-.+|| |+.|+.+.+++++.+.+. +.+++.+..
T Consensus 91 ~~~~~~~ill~gH~DvVP~~~~~~W~~dPf~~~~~dg~lyGRGt~D~K---g~~aa~l~A~~~l~~~~~~~~~~i~~~~~ 167 (479)
T 2zog_A 91 SDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDK---GPVAGWMNALEAYQKTGQEIPVNLRFCLE 167 (479)
T ss_dssp CCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTH---HHHHHHHHHHHHHHHTTCCCSSEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCC---CCHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 899989799980456458987433557997437639979835721245---45899999999986410268986399850
Q ss_pred ECCC
Q ss_conf 1026
Q gi|254780392|r 312 LVEN 315 (494)
Q Consensus 312 ~~EN 315 (494)
.-|-
T Consensus 168 ~dEE 171 (479)
T 2zog_A 168 GMEE 171 (479)
T ss_dssp SCGG
T ss_pred CCCC
T ss_conf 4321
No 15
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}
Probab=84.84 E-value=1.9 Score=21.58 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCCCEEECHHHH---HHHHHH-HHCCCCCHHHHC
Q ss_conf 9999864202125403029999---999998-611332100001
Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEF---CKQVRK-LESLGVAVEILD 215 (494)
Q Consensus 176 egv~lARDLvN~PaN~ltP~~l---A~~a~~-l~~~gl~v~Vld 215 (494)
+-+.+.|+|++.|+---.++.. ++..++ |++.|+++++++
T Consensus 7 ~~i~ll~~lv~ipS~s~~e~~~~~~~~~l~~~l~~~G~~~~~~~ 50 (364)
T 2rb7_A 7 HIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERMD 50 (364)
T ss_dssp HHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999957999896827899999999999997799499980
No 16
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structural genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=82.07 E-value=2.5 Score=20.79 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=70.7
Q ss_pred HHHHHHHHHCCCCCEEEC--H------HHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 999986420212540302--9------999999998-6113321000011100013458988742025778506886205
Q gi|254780392|r 176 KGVNLARDIINEPANVLG--T------DEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWE 246 (494)
Q Consensus 176 egv~lARDLvN~PaN~lt--P------~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~ 246 (494)
+-+.+-++|+.-|+--.. | ...++.+.+ +++.|++++.++...- -+..++..+-+-+++-+.
T Consensus 26 ~~v~~L~~lv~ipS~s~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~---------~~~~~~~~~~~~~v~a~~ 96 (485)
T 3dlj_A 26 EFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQ---------QLPDGQSLPIPPVILAEL 96 (485)
T ss_dssp HHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEE---------EC--CCEEECCCEEEEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC---------CCCCCCCCCCCCEEEEEE
T ss_conf 99999999957888899986433489999999999999976993999815664---------356676678786799996
Q ss_pred CCCCCCCCEEEEECCEEECCCC--------CCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEE
Q ss_conf 7886565126630211200663--------10033------33200232211235689999999987087--87289986
Q gi|254780392|r 247 GGDSEEQPLAFIGKGVVFDTGG--------ISIKP------SHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVL 310 (494)
Q Consensus 247 g~~~~~~piaLVGKGvTFDtGG--------islKp------~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~ 310 (494)
|+..+.++|.|.|--=|-.-|- ++.+- +.|=.+| ++|.++.+-+++++-+++. |.+|+.+.
T Consensus 97 g~~~~~~~vll~gH~DvVP~~~~~~W~~dPf~~~~~dg~lyGRG~~D~---Kg~~~a~l~A~~~l~~~~~~~~~~i~~~~ 173 (485)
T 3dlj_A 97 GSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDN---KGPVLAWINAVSAFRALEQDLPVNIKFII 173 (485)
T ss_dssp CCCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTT---HHHHHHHHHHHHHHHHTTCCCSSEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCC---CCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 889998889998177703898754465798724755998983364457---77578999999998765126785289999
Q ss_pred EECCC
Q ss_conf 41026
Q gi|254780392|r 311 ALVEN 315 (494)
Q Consensus 311 ~~~EN 315 (494)
..-|=
T Consensus 174 ~~~EE 178 (485)
T 3dlj_A 174 EGMEE 178 (485)
T ss_dssp ESCGG
T ss_pred EEEEH
T ss_conf 63202
No 17
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=80.75 E-value=0.3 Score=27.32 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=41.8
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 9986410266899974707763024895888634786640365236788752079613552111200
Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTG 373 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTG 373 (494)
+-|....+|+|...+.+|||+|++.||+.|+ | ..|-..+ ...++|...|.+-.+-+
T Consensus 27 v~V~~V~~~spA~~~L~~GD~Ii~InG~~V~----~------~~dl~~~-i~~~~pG~~V~l~v~R~ 82 (125)
T 2hga_A 27 VQIDSVVPGSPASKVLTPGLVIESINGMPTS----N------LTTYSAA-LKTISVGEVINITTDQG 82 (125)
T ss_dssp EEEEEECSSSGGGGTSCTTCEEEEETTEECS----S------HHHHHHH-HTTCCTTCEEEEEETTE
T ss_pred EEEEEECCCCHHHHHCCCCCEEEEECCEECC----C------HHHHHHH-HHCCCCCCEEEEEEEEC
T ss_conf 8999989999589746899999986998758----9------9999999-97289989899999999
No 18
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=76.62 E-value=0.49 Score=25.79 Aligned_cols=51 Identities=12% Similarity=0.353 Sum_probs=34.4
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEE
Q ss_conf 99864102668999747077630248958886347866403652367887520796135521
Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDL 368 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ 368 (494)
+-+....+|.|...+.+|||+|++-||+.|.- . .|...+. ...+|..-+.+
T Consensus 9 v~V~~V~~~spA~~aL~~GDvI~~Ing~~i~~----~------~dl~~~i-~~~~~G~~v~l 59 (100)
T 3i18_A 9 VYVMSVKDDVPAADVLHAGDLITEIDGNAFKS----S------QEFIDYI-HSKKVGDTVKI 59 (100)
T ss_dssp EEEEEECTTSGGGGTCCTTCEEEEETTBCCSS----H------HHHHHHH-HTSCTTCEEEE
T ss_pred EEEEEECCCCHHHHHCCCCCEEEEECCCCCCC----H------HHHHHHH-HCCCCCCEEEE
T ss_conf 99999899996897177799999948833799----9------9999998-56899989999
No 19
>2ytw_A Serine protease HTRA1; protein regulation, IGF-binding protein cleavage, peptidase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.80 E-value=1 Score=23.57 Aligned_cols=32 Identities=16% Similarity=0.466 Sum_probs=27.0
Q ss_pred EEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 8998641026689997-4707763024895888
Q gi|254780392|r 306 AIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 306 v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
=+.|.-..+|+|...| .+|||||++.||+.|+
T Consensus 49 Gv~V~~V~~~spA~~aGL~~GDvI~~ing~~V~ 81 (118)
T 2ytw_A 49 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 81 (118)
T ss_dssp SEEEEECCSSSTTTTTTCCSSCEEEEETTEECC
T ss_pred EEEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 599999779995898688888588999999948
No 20
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Haemophilus somnus 129PT}
Probab=69.28 E-value=5.3 Score=18.48 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=8.4
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 89999998089983
Q gi|254780392|r 39 SIVMRAVSVKNFIG 52 (494)
Q Consensus 39 ~~L~~~i~~~~F~G 52 (494)
..|.++++..+|+-
T Consensus 35 ~~l~~~l~~~G~~v 48 (487)
T 2qyv_A 35 QFIINWAKTKGFFA 48 (487)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCEE
T ss_conf 99999999789989
No 21
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=67.53 E-value=5.8 Score=18.24 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCC
Q ss_conf 986543589999999976689
Q gi|254780392|r 474 SWASGFGVRLLDEFVRAFYEK 494 (494)
Q Consensus 474 ~g~tg~~vr~l~~~~~~~~~~ 494 (494)
.-+--.|++.+.+++.+|.+|
T Consensus 414 E~~l~~G~~~~a~~al~yL~~ 434 (445)
T 3io1_A 414 ESVMAVAVETLARVALNFPWQ 434 (445)
T ss_dssp CCHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999887
No 22
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha- beta protein, hydrolase; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=61.07 E-value=2.9 Score=20.34 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 998641026689997-4707763024895888
Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
+-+.-..++.|-.+| .|+||||++.||+.|.
T Consensus 246 v~V~~V~~~spA~~aGLk~GDiI~svnG~~I~ 277 (318)
T 1te0_A 246 IVVNEVSPDGPAANAGIQVNDLIISVDNKPAI 277 (318)
T ss_dssp EEEEEECTTSTTTTTCCCTTCCEEEETTEECC
T ss_pred CEEEEECCCCCHHHCCCCCCCEEEEECCEECC
T ss_conf 35665257992787899989999998999978
No 23
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=60.65 E-value=7.6 Score=17.38 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHHHHHHHCCCCCEEECHH---HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC--CCC
Q ss_conf 99998642021254030299---99999998-6113321000011100013458988742025778506886205--788
Q gi|254780392|r 176 KGVNLARDIINEPANVLGTD---EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWE--GGD 249 (494)
Q Consensus 176 egv~lARDLvN~PaN~ltP~---~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~--g~~ 249 (494)
+-+.+-|+|||.|+---..+ .+++...+ |++.|+++++.+....... +-+.+.-+|+..|+-++.-++- |.+
T Consensus 20 ~~i~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~--~nlia~~~g~~~~~i~l~~HlDtVp~~ 97 (393)
T 1cg2_A 20 AVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVG--DNIVGKIKGRGGKNLLLMSHMDTVYLK 97 (393)
T ss_dssp HHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCS--EEEEEEEECSSCCCEEEEEECCBSCCT
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC--CEEEEEECCCCCCEEEEEEECCCCCCC
T ss_conf 999999999589998979899999999999999968997999835886567--779999888999979999202507999
Q ss_pred C--CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCC
Q ss_conf 6--5651266302112006631003333200232211235689999999987087--87289986410266
Q gi|254780392|r 250 S--EEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLALVENM 316 (494)
Q Consensus 250 ~--~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~~~EN~ 316 (494)
. ...|+.+ + || -| -+.|..+|| +|-|+.+.+++++.+.+. +.+|+.+....|=.
T Consensus 98 ~~w~~~Pf~~-------~-~~-~~-~GrG~~D~k---g~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 155 (393)
T 1cg2_A 98 GILAKAPFRV-------E-GD-KA-YGPGIADDK---GGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEK 155 (393)
T ss_dssp THHHHSCCEE-------E-TT-EE-ECTTTTTTH---HHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGG
T ss_pred CCCCCCCEEE-------E-CC-EE-EECCCCCCC---HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 9677898699-------8-99-89-968646587---9999999999998752147871799904554222
No 24
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptide-binding module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=59.90 E-value=0.76 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=24.2
Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 998641026689997-4707763024895888
Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
+-+....+|+|..+| .||||||++.||+.|.
T Consensus 37 v~V~~V~~~spA~~aGL~~GDvI~~ing~~V~ 68 (113)
T 2pzd_A 37 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ 68 (113)
T ss_dssp EEEEEEBTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 89999899998998599988799999999968
No 25
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=59.53 E-value=3.4 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=25.2
Q ss_pred EEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 98641026689997-4707763024895888
Q gi|254780392|r 308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
-+.-..+|.|..+| .||||||++.||+.|.
T Consensus 245 ~V~~V~~~spa~~aGl~~GDiI~~i~g~~i~ 275 (324)
T 1y8t_A 245 KIVEVVAGGAAANAGVPKGVVVTKVDDRPIN 275 (324)
T ss_dssp EEEEECTTSTTTTTTCCTTCEEEEETTEECC
T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 2456436970788799999999998998968
No 26
>2joa_A Serine protease HTRA1; PDZ, beta-sandwich, cyclically-permuted, protein binding; NMR {Homo sapiens}
Probab=59.40 E-value=0.88 Score=24.00 Aligned_cols=31 Identities=16% Similarity=0.475 Sum_probs=25.4
Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 998641026689997-4707763024895888
Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
+-+....+|+|..+| .+|||||++-||+.|.
T Consensus 37 v~V~~V~~~spA~~aGL~~GDvI~~ing~~V~ 68 (105)
T 2joa_A 37 AYIIEVIPDTPAEAGGLKENDVIISINGQSVV 68 (105)
T ss_dssp EEEEEECSSSHHHHHTCCTTCEECBCSSCBCC
T ss_pred EEEEEECCCCHHHHCCCCCCEEEEEECCEECC
T ss_conf 89999799996998699998199999999978
No 27
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein binding; 1.70A {Homo sapiens}
Probab=58.95 E-value=0.85 Score=24.09 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=24.4
Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 998641026689997-4707763024895888
Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
+.+.-..+|+|..+| .+|||||++.||+.|.
T Consensus 37 v~V~~V~~~spA~~aGl~~GDiI~~ing~~v~ 68 (112)
T 2p3w_A 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV 68 (112)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 89999789997998699999899999999988
No 28
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein structure initiative; NMR {Geobacillus thermodenitrificans ng80-2}
Probab=56.77 E-value=2 Score=21.43 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=32.9
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEE
Q ss_conf 99864102668999747077630248958886347866403652367887520796135521
Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDL 368 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ 368 (494)
+-+....+|+|...-.+|||+|++.||+.|. +.+ |...+ ...++|..-|.+
T Consensus 7 v~V~~V~~~spA~agL~~GDvI~~ing~~v~----s~~------~l~~~-i~~~~~g~~v~l 57 (94)
T 2kl1_A 7 VYVMSVLPNMPAAGRLEAGDRIAAIDGQPIN----TSE------QIVSY-VREKQAGDRVRV 57 (94)
T ss_dssp EECCCCCTTSTTBTTBCTTCEEEEETTBCCC----CHH------HHHHH-HHHSCTTCCEEE
T ss_pred EEEEEECCCCCHHHCCCCCCEEEECCCCCCC----CHH------HHHHH-HHCCCCCCEEEE
T ss_conf 8999999999068779998799971998179----999------99999-973899998999
No 29
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structural genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}
Probab=56.62 E-value=6.5 Score=17.86 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 99999864202125403029999999998-611332100001110001345898874202577850688620
Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKW 245 (494)
Q Consensus 175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y 245 (494)
.|.+.+.++|++.|+=--.-..+++..++ |++.|+++++.+... ..-.+|.+++..+| +|+++..-+
T Consensus 17 ~e~i~lLk~Lv~ipS~sG~E~~i~~~l~~~L~~~G~~v~~~~~~~-~~~~~~nvia~~~g---~~~lll~gH 84 (321)
T 3cpx_A 17 FQGMQLLKELCSIHAPSGNEEPLKDFILEYIRSNAGSWSYQPVIY-ADNDLQDCIVLVFG---NPRTAVFAH 84 (321)
T ss_dssp CCHHHHHHHHHHSCCBTTCCHHHHHHHHHHHHHHGGGSSSCCEEE-CSGGGTTCEEEEES---SCSEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC-CCCCCCEEEEECCC---CCEEEEEEC
T ss_conf 999999999975999698789999999999997499468701310-14775119996289---861889843
No 30
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=52.90 E-value=2.1 Score=21.39 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=31.1
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEE
Q ss_conf 64102668999747077630248958886347866403652367887520796135521
Q gi|254780392|r 310 LALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDL 368 (494)
Q Consensus 310 ~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ 368 (494)
....+|+|...-.+|||+|++.||+.|. | ..|-..+ ...++|..-|.+
T Consensus 6 ~~V~~~spA~agL~~GD~I~~ing~~i~--~--------~~~l~~~-l~~~~~G~~v~l 53 (91)
T 2kjp_A 6 SSVVENMPAKGKIEVGDKIISADGKNYQ--S--------AEKLIDY-ISSKKAGDKVTL 53 (91)
T ss_dssp CCCCCSSCCSSCCCSSCEEEEETTBCCS--S--------HHHHHHH-HSSCCSSCEECE
T ss_pred EEECCCCCHHHCCCCCCEEEEECCCCCC--C--------HHHHHHH-HHCCCCCCEEEE
T ss_conf 9889999357689999899993886489--9--------9999999-974898999999
No 31
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8}
Probab=46.82 E-value=12 Score=15.87 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCCEEEEEHHHHHH----HHH-CCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 866403652367887----520-796135521112002354317760578708989999999989
Q gi|254780392|r 342 DAEGRLILADALWYC----RTH-YNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSG 401 (494)
Q Consensus 342 DAEGRlvLaD~l~ya----~~~-~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~ 401 (494)
|.-|-++++|+=.++ ... -+|=--.|+-|-|-.- ---|+.-.-+|+|+++++++|.++-
T Consensus 188 d~vga~l~~D~sH~~GLIa~g~~~~Pl~~aDvvt~sTHK-Tl~GPrgGiI~~~~~e~~~ki~~av 251 (407)
T 2dkj_A 188 DEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHK-TLRGPRGGLILSNDPELGKRIDKLI 251 (407)
T ss_dssp HHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSG-GGCCCSCEEEEESCHHHHHHHHHHH
T ss_pred HHCCEEEEHHHHHHHHHEECCCCCCCCCCCCEEEECCCC-CCCCCCCCCEEECCHHHHHHHHHHC
T ss_conf 430715542146565540164348965557369700554-5668876520206588999998653
No 32
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=44.44 E-value=1.5 Score=22.37 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.0
Q ss_pred EEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 8641026689997-4707763024895888
Q gi|254780392|r 309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
+--..+|.|..+| .+|||+|++.||+.|.
T Consensus 8 V~~V~~~spA~~AGl~~GD~I~~ing~~i~ 37 (91)
T 2zpm_A 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLT 37 (91)
T ss_dssp CSEECTTSHHHHTTCCTTCEEEEETTEECC
T ss_pred EEEECCCCHHHHCCCCCCCEEEEECCEEEC
T ss_conf 989999893776589999999997998848
No 33
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=43.89 E-value=1.2 Score=23.06 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=19.8
Q ss_pred EEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 8641026689997-4707763024895888
Q gi|254780392|r 309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
+.+..++.+-..| .+|||||++.||.+|.
T Consensus 23 v~~v~~~s~~~~aGl~~gDvI~~ing~~i~ 52 (87)
T 2i6v_A 23 VSPGKDPVLFESIGLQDGDMAVALNGLDLT 52 (87)
T ss_dssp EEECSCHHHHHHTTCCTTCEEEEETTEETT
T ss_pred EECCCCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 961689998998799989999999999988
No 34
>2pos_A Sylvaticin; elicitin, toxin; 1.60A {Pythium sylvaticum} PDB: 2pr0_A
Probab=42.26 E-value=13 Score=15.76 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 0663100333320---0232211235689999999987087872899
Q gi|254780392|r 265 DTGGISIKPSHGM---EEMKGDLGGAAAVTGLLHVLAERKAKINAIG 308 (494)
Q Consensus 265 DtGGislKp~~~M---~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~ 308 (494)
|| |+|+=|..++ ++|+ =||.+.+.-..+..+..+++|--.+.
T Consensus 30 DS-Gys~~~~~s~PT~~q~~-~MCaS~aC~~Li~~v~al~ppDC~l~ 74 (94)
T 2pos_A 30 AS-GWQMLPPAGYPTPEQLK-LMCGTAECFTLIDAIKALNPNDCILV 74 (94)
T ss_dssp HH-CCCTTTTCCSCCHHHHH-HHHTCHHHHHHHHHHHTTCCCSSBEE
T ss_pred CC-CCEECCCCCCCCHHHHH-HHHCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 67-82224778898989999-88076889999999981898773777
No 35
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=36.44 E-value=7.9 Score=17.28 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 998641026689997-4707763024895888
Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
+-+.-..++.|..+| .+|||||++.||+.|+
T Consensus 288 ~~V~~V~~~spA~~aGL~~GDvIl~InG~~V~ 319 (448)
T 1ky9_A 288 AFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS 319 (448)
T ss_dssp EECCCCTTCSSSTTTTCCTTCEECBSSSSBCC
T ss_pred CEEEEECCCCCHHHCCCCCCCEEEECCCCCCC
T ss_conf 45889888887343378888789964880548
No 36
>3gux_A Putative Zn-dependent exopeptidase; YP_001298628.1, structural genomics, joint center for structural genomics, JCSG; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=34.72 E-value=19 Score=14.61 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHCCCCCEEECHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCE
Q ss_conf 20212540302999999999861133210000111000134589887420257785068862057886565126630211
Q gi|254780392|r 183 DIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGV 262 (494)
Q Consensus 183 DLvN~PaN~ltP~~lA~~a~~l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGv 262 (494)
+.+..|++...-+++.++ |++.|++|++- .-.... . .+.....+-|+-+++|. +++. .|| |=
T Consensus 42 R~~GS~~~~~a~~yi~~~---l~~~g~~v~~q-~f~~~~--~-------~~~~~~~~Nii~~~~g~--~~~~-ili--~A 103 (314)
T 3gux_A 42 RVPNTQAHKECGEYLAGQ---LEKFGAKVYNQ-YADLIA--Y-------DGTILKSRNIIGAYKPE--SKKR-ILL--CA 103 (314)
T ss_dssp CCTTSHHHHHHHHHHHHH---HHHTTCEEEEE-EEEEEC--T-------TSCEEEEEEEEEEESTT--CSSE-EEE--EE
T ss_pred CCCCCHHHHHHHHHHHHH---HHHCCCEEEEE-EEEEEC--C-------CCCEEEEEEEEEEECCC--CCCE-EEE--EE
T ss_conf 599999999999999999---99889979998-678654--6-------67435799999993799--9853-899--98
Q ss_pred EECCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 2006631003------3332002322112356899999999870878728998641026
Q gi|254780392|r 263 VFDTGGISIK------PSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN 315 (494)
Q Consensus 263 TFDtGGislK------p~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN 315 (494)
=|||=+.+=+ +.....+---|-+|.|++|.+++++.+.+++..|+.+.=-+|-
T Consensus 104 HyDs~~~~~~~~~~~~~~~~~~GA~DnaSGvA~lLElAr~l~~~~~~~ti~fv~f~~EE 162 (314)
T 3gux_A 104 HWDSRPYADNDPDPKNHHTPILGVNDGASGVGVLLEIARQIQKEQPALGIDIVFFDSED 162 (314)
T ss_dssp ECCCCC--------------------CHHHHHHHHHHHHHHHHSCCSSEEEEEEECSCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHH
T ss_conf 32788778876544456665478556651199999999984201678766998654344
No 37
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=34.64 E-value=6.1 Score=18.04 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=26.7
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHC
Q ss_conf 7089899999999899856971767-76867888617
Q gi|254780392|r 387 FANNDVLAEQLLSSGLSTGELLWRM-PMNEEYNKLIE 422 (494)
Q Consensus 387 ~~n~~~~~~~~~~a~~~~ge~~w~l-Pl~~~y~~~~~ 422 (494)
+-|+++=.+.+.++=+..=+++|.| |+|+.|++.+.
T Consensus 378 ~ynT~edVd~li~al~~~v~~lr~~sp~~~~~~~~~~ 414 (423)
T 3lvm_A 378 RFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVD 414 (423)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCC
T ss_conf 9999999999999999999999886965887632678
No 38
>2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4
Probab=33.76 E-value=9.4 Score=16.73 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHCCCC
Q ss_conf 89899999999899856971
Q gi|254780392|r 389 NNDVLAEQLLSSGLSTGELL 408 (494)
Q Consensus 389 n~~~~~~~~~~a~~~~ge~~ 408 (494)
-+..+.+.+.++.+..+..+
T Consensus 267 ~~~~~~~~~~~~a~~~~~~~ 286 (349)
T 2gre_A 267 YHYALRKHLVELAKTNHIEY 286 (349)
T ss_dssp CCHHHHHHHHHHHHHHTCCE
T ss_pred CCHHHHHHHHHHHHHCCCCC
T ss_conf 56267788899999829995
No 39
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=33.11 E-value=3.5 Score=19.73 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=22.6
Q ss_pred EEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf 98641026689997-4707763024895888
Q gi|254780392|r 308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494)
-+.-..++.|-.+| .||||||++.||+.|.
T Consensus 259 ~V~~V~~~spA~~AGL~~GDiI~~inG~~I~ 289 (325)
T 1lcy_A 259 LIHKVILGSPAHRAGLRPGDVILAIGEQMVQ 289 (325)
T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf 9999379996898699989999998999938
No 40
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}
Probab=32.44 E-value=20 Score=14.36 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 43589999999976689
Q gi|254780392|r 478 GFGVRLLDEFVRAFYEK 494 (494)
Q Consensus 478 g~~vr~l~~~~~~~~~~ 494 (494)
=...+.|+++|++=-||
T Consensus 473 ~~~~~~l~~~l~~l~~~ 489 (490)
T 3mru_A 473 QLFWDQMVALLEAIPEK 489 (490)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999977631
No 41
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=32.20 E-value=21 Score=14.33 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=12.3
Q ss_pred HHHHCCCCCEEECHHHHHHHHHHH
Q ss_conf 642021254030299999999986
Q gi|254780392|r 181 ARDIINEPANVLGTDEFCKQVRKL 204 (494)
Q Consensus 181 ARDLvN~PaN~ltP~~lA~~a~~l 204 (494)
.-|+.-.|.....+..........
T Consensus 173 ~~d~~~~~~~~~~~~~~~~~~~~~ 196 (332)
T 2qcv_A 173 VFELDYRPYSWETPEETAVYYSLV 196 (332)
T ss_dssp EEECCCCGGGSSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 982443641112246777887766
No 42
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 2ka9_A
Probab=30.49 E-value=9.4 Score=16.73 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf 8641026689997--4707763024895888
Q gi|254780392|r 309 VLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 309 ~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494)
+--+.++.|-..+ .+|||+|.+-||..|+
T Consensus 134 V~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~ 164 (196)
T 3gsl_A 134 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLE 164 (196)
T ss_dssp EEEECTTSHHHHHCCCCTTCEEEEETTEECS
T ss_pred EEEECCCCHHHHCCCCCCCCEEEEECCEECC
T ss_conf 9998279958976999989999999999988
No 43
>3ofq_C 50S ribosomal protein L2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_C 2wwq_C 3ofr_C* 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C 3df4_C 1vt2_C 3i1p_C 3i1r_C 3i1t_C 3i20_C 3i22_C 3kcr_6 ...
Probab=30.12 E-value=20 Score=14.38 Aligned_cols=95 Identities=14% Similarity=0.247 Sum_probs=50.8
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 78506886205788656512663021120066310033332002322112356899999999870878728998641026
Q gi|254780392|r 236 RPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN 315 (494)
Q Consensus 236 ~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN 315 (494)
.+.+++.+||.|.. ..+||||- |..|-. .++.+.||
T Consensus 73 i~~~V~~IeyDPnR--sa~IAlv~----~~dg~~--------------------------------------~YIlap~g 108 (271)
T 3ofq_C 73 IPAVVERLEYDPNR--SANIALVL----YKDGER--------------------------------------RYILAPKG 108 (271)
T ss_dssp CCEECCCEECCTTS--SSCEEECC----BSSSCC--------------------------------------CEEECBSC
T ss_pred CCEEEEEEEECCCC--CCEEEEEE----ECCCCE--------------------------------------EEEECCCC
T ss_conf 77899999978998--73179998----169958--------------------------------------98888687
Q ss_pred CCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECC
Q ss_conf 689997470776302489588863478664036523678875207961355211120023543177605787089
Q gi|254780392|r 316 MPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANN 390 (494)
Q Consensus 316 ~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~ 390 (494)
| ++||+|.+.+...+.+.|.--=+-+-+..-+ |-. +..|. .|+..+-=...+|-+++-+
T Consensus 109 l------~vGd~I~sg~~~~~~~Gn~lpL~~IP~Gt~I-~NI-E~~pg--------~Ggk~aRSAGt~A~ii~k~ 167 (271)
T 3ofq_C 109 L------KAGDQIQSGVDAAIKPGNTLPMRNIPVGSTV-HNV-EMKPG--------KGGQLARSAGTYVQIVARD 167 (271)
T ss_dssp C------CTTCEECBSSSCCCSTTCBCCGGGSCTTCBC-CSC-CSSTT--------TCCCSSCSTTCCCEEEECC
T ss_pred C------CCCCEEEECCCCCCCCCCCCCHHHCCCCCEE-EEE-EECCC--------CCCEEEEECCCEEEEEEEC
T ss_conf 8------6898898588887666663717538898778-876-63289--------9755984078579999960
No 44
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei}
Probab=29.87 E-value=22 Score=14.07 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCCCEEEEEHHHHHH----HH-HCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 866403652367887----52-079613552111200235431776057870898999999998
Q gi|254780392|r 342 DAEGRLILADALWYC----RT-HYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSS 400 (494)
Q Consensus 342 DAEGRlvLaD~l~ya----~~-~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a 400 (494)
|.-|-++++|+=.++ .. .-+|=.-.|+-|-|-+- ---|+.-.-+|+|+++++++|.++
T Consensus 197 d~vga~l~~D~sH~~GLIa~g~~p~Pl~~aDvvt~sTHK-TlrGPrgGiIl~~~~~~~~kI~~a 259 (425)
T 3ecd_A 197 DSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHK-TLRGPRGGFVLTNDEEIAKKINSA 259 (425)
T ss_dssp HHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSG-GGCCCSCEEEEESCHHHHHHHHHH
T ss_pred HHHCCEEECCHHHHHHHHHCCCCCCCHHHHCEEECCCCC-CCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 761970532646677775256679811210426551435-577888438973769999998766
No 45
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=28.82 E-value=17 Score=14.94 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 12356899999999870878728998641026689997
Q gi|254780392|r 284 LGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSA 321 (494)
Q Consensus 284 M~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a 321 (494)
..+....+..+..+........+.......+..+++..
T Consensus 186 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1vhe_A 186 RIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLRGA 223 (373)
T ss_dssp HHHHHHHHHHHHHHHTSCCSSEEEEEEESCCTTTSHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCC
T ss_conf 34314689999998636667871785024212157555
No 46
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=28.73 E-value=17 Score=14.95 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=28.8
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHH
Q ss_conf 99864102668999747077630248958886347866403652367887
Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYC 356 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya 356 (494)
+-|.-..++.|...+.+|||.|-.-||..++ | +-..|++..-
T Consensus 37 i~I~~v~~gg~A~~~L~~GD~Il~VNg~~v~-------~-~t~~~av~~l 78 (95)
T 1mfg_A 37 IFVTRVQPEGPASKLLQPGDKIIQANGYSFI-------N-IEHGQAVSLL 78 (95)
T ss_dssp EEEEEECTTSTTTTTCCTTCEEEEETTEECT-------T-CBHHHHHHHH
T ss_pred EEEEEECCCCHHHHCCCCCCEEEEECCEECC-------C-CCHHHHHHHH
T ss_conf 9999978999479648899999999999988-------9-9899999999
No 47
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=28.24 E-value=12 Score=16.02 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 9986410266899974707763024895888
Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIE 337 (494)
Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tve 337 (494)
+.|.-..++.|...+.+|||+|..-||..++
T Consensus 45 i~V~~V~~gg~A~~~L~~GD~Il~VNg~~v~ 75 (103)
T 1n7t_A 45 IFVTRVQPEGPASKLLQPGDKIIQANGYSFI 75 (103)
T ss_dssp EECCCBSSSSTTSSSCCTTCEEEEETTEECS
T ss_pred EEEEEECCCCHHHHCCCCCCEEEEECCEECC
T ss_conf 8999978999467166899999999999988
No 48
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=28.03 E-value=7.4 Score=17.45 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=14.2
Q ss_pred CCHHHHHCCCCCCEEE
Q ss_conf 4707763024895888
Q gi|254780392|r 322 QRPGDIVRSMSGQTIE 337 (494)
Q Consensus 322 ~~pgdvi~~~~G~tve 337 (494)
.+|||||++.||+.|.
T Consensus 55 l~~GDvI~~ing~~v~ 70 (105)
T 2i4s_A 55 LQDGDMAVALNGLDLT 70 (105)
T ss_dssp CCTTCEEEEETTEETT
T ss_pred CCCCCEEEEECCEECC
T ss_conf 9989999998999948
No 49
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=26.83 E-value=25 Score=13.71 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=41.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCHH
Q ss_conf 332245773789999999999999999864202125403029999999998611332100
Q gi|254780392|r 153 SVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLESLGVAVE 212 (494)
Q Consensus 153 ~i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l~~~gl~v~ 212 (494)
.+.+.+.+...+-..+...+..++-...++.++ .|...++|+.+++..+.++.+|.+++
T Consensus 156 G~v~~G~s~~eA~~~~~~lE~~a~~~l~a~~~G-~~~~~l~~e~~~~~~~~~~~~G~~~~ 214 (215)
T 1e4c_P 156 GLIACEVNLEKALWLAHEVEVLAQLYLTTLAIT-DPVPVLSDEEIAVVLEKFKTFGLRIE 214 (215)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTC-SSCCCCCHHHHHHHHHHC--------
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 049966999999999999999999999999739-99998999999999999985189999
No 50
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=22.94 E-value=30 Score=13.22 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=39.4
Q ss_pred EEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCC
Q ss_conf 0688620578865651266302112006631003333200232211235689999999987087--8728998641026
Q gi|254780392|r 239 YLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLALVEN 315 (494)
Q Consensus 239 rli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~~~EN 315 (494)
+=|+.+++|.. .++.| ++| =-|||-+. +.|-.+ |.+|.|+++.+++++.+.+. +..|+.+.-..|-
T Consensus 65 ~Nvi~~~~g~~-~~~~i-~i~--aH~D~~~~----~~Ga~D---~~sG~a~~le~ar~l~~~~~~~~~~i~~~~~~~EE 132 (284)
T 1tkj_A 65 YNLIANWPGGD-PNKVL-MAG--AHLDSVSS----GAGIND---NGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEE 132 (284)
T ss_dssp EEEEEECSCSE-EEEEE-EEE--EECCCCTT----SCCTTT---THHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGG
T ss_pred EEEEEEECCCC-CCCEE-EEE--CCCCCCCC----CCCCCC---CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 68999981799-99569-997--14456466----899778---83249999999999750068987359999833543
No 51
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=22.36 E-value=30 Score=13.14 Aligned_cols=127 Identities=10% Similarity=0.038 Sum_probs=60.5
Q ss_pred HHHHHHHHHCCCCCEEECH------------HHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999864202125403029------------999999998-611332100001110001345898874202577850688
Q gi|254780392|r 176 KGVNLARDIINEPANVLGT------------DEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAV 242 (494)
Q Consensus 176 egv~lARDLvN~PaN~ltP------------~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~ 242 (494)
+-+..-|+|+.-|.=--.| ...++...+ +++.|++++..+ .+.+.-.++...|++++
T Consensus 35 ~~i~~l~~lv~ipSvs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~----------n~~~~~~~~~~~~~vll 104 (492)
T 3khx_A 35 QIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVD----------HIAGRIEAGKGNDVLGI 104 (492)
T ss_dssp HHHHHHHHHHTSCCCCCSSSCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET----------TTEEEEEEECSSCEEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC----------CEEEEEEECCCCCEEEE
T ss_conf 99999999957999899855445576777999999999999998799069868----------68999970899987999
Q ss_pred EECCCCCCCCCCEEEEECCEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCC-
Q ss_conf 6205788656512663021120066310033----3320023221123568999999998708--78728998641026-
Q gi|254780392|r 243 MKWEGGDSEEQPLAFIGKGVVFDTGGISIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVEN- 315 (494)
Q Consensus 243 l~Y~g~~~~~~piaLVGKGvTFDtGGislKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN- 315 (494)
.-+- +- +-+|-+=|+|-=..-++. +.|-.+|| +|-++.+.+++++.+.+ +|.||..++-..|=
T Consensus 105 ~~H~----Dv---Vp~~~~W~~~Pf~~~~~~g~lyGRG~~D~K---g~v~a~l~al~~l~~~~~~~~~~l~~~~~~dEE~ 174 (492)
T 3khx_A 105 LCHV----DV---VPAGDGWDSNPFEPVVTEDAIIARGTLDDK---GPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEES 174 (492)
T ss_dssp EEEC----CC---CCCCSCCSSCTTSCEECSSEEESTTTTTTH---HHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTTC
T ss_pred EEEE----CC---CCCCCCCCCCCCCEEEECCEEEECCCCCCC---CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHC
T ss_conf 8102----51---489998758996059989999967854577---5599999999999985067677568741430102
Q ss_pred -CCCCCCC
Q ss_conf -6899974
Q gi|254780392|r 316 -MPGSSAQ 322 (494)
Q Consensus 316 -~~~~~a~ 322 (494)
+.+...|
T Consensus 175 g~~g~~~~ 182 (492)
T 3khx_A 175 DWKCTDRY 182 (492)
T ss_dssp CCCTTSHH
T ss_pred CCCCHHHH
T ss_conf 78237999
No 52
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=21.88 E-value=27 Score=13.53 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=55.2
Q ss_pred CEEECHHHHHHHHHHHH-CCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCC
Q ss_conf 40302999999999861-13321000011100013458988742025778506886205788656512663021120066
Q gi|254780392|r 189 ANVLGTDEFCKQVRKLE-SLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTG 267 (494)
Q Consensus 189 aN~ltP~~lA~~a~~l~-~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtG 267 (494)
+-+..|..|-+.+++++ ++|+ +-|+||-+. ||| |-. ++--.+|-|- .+.|+.+|||+ +|
T Consensus 237 G~~~~~~~fl~~lr~lc~~~gi-llI~DEV~t---GfG------RtG----~~~a~~~~~v---~PDiv~~gK~l---~g 296 (472)
T 3hmu_A 237 GVIVAPDSYWPEIQRICDKYDI-LLIADEVIC---GFG------RTG----NWFGTQTMGI---RPHIMTIAKGL---SS 296 (472)
T ss_dssp TCBCCCTTHHHHHHHHHHHTTC-EEEEECTTT---TTT------TTS----SSCHHHHHTC---CCSEEEECGGG---TT
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-EEEEECCCC---CCC------CCC----CCCCCCCCCC---CCCEEEECCHH---HC
T ss_conf 9835998999999999998197-899703431---467------578----8873001699---79989889856---55
Q ss_pred CCCC--------------CCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 3100--------------3333--2002322112356899999999870878728
Q gi|254780392|r 268 GISI--------------KPSH--GMEEMKGDLGGAAAVTGLLHVLAERKAKINA 306 (494)
Q Consensus 268 Gisl--------------Kp~~--~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v 306 (494)
|+.. .+.. ...++-...-+.|+.+.++..+-+.++.-|+
T Consensus 297 G~~p~a~~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~ 351 (472)
T 3hmu_A 297 GYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHV 351 (472)
T ss_dssp TSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 8765102676899998506787751658898856768788777788615723899
No 53
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=21.73 E-value=17 Score=14.85 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHHHHCCCC-CCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99999870878-72899864102668999747077630248958886347866403652367887520796135521112
Q gi|254780392|r 293 LLHVLAERKAK-INAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATL 371 (494)
Q Consensus 293 ~~~aia~l~~~-v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATL 371 (494)
+++.+..|.++ .+|+ --=.+-.+...-.+|||+|.-..|-.|-+. |+++=. +..+|-+.|
T Consensus 2 ai~~L~~l~p~~a~V~--rdg~~~~i~~~~l~~GDiv~v~~Gd~IPaD-----g~v~~g------------~~~vdes~l 62 (113)
T 2hc8_A 2 AIKKLVGLQAKTAVVI--RDGKEIAVPVEEVAVGDIVIVRPGEKIPVD-----GVVVEG------------ESYVDESMI 62 (113)
T ss_dssp HHHHHHHHSCSEEEEE--ETTEEEEEEGGGCCTTCEEEECTTCBCCSE-----EEEEEC------------CEEEECHHH
T ss_pred HHHHHHHCCCCEEEEE--ECCEEEEEEHHHCCCCCEEEECCCCEEECC-----EEEEEC------------CCCCCCHHH
T ss_conf 7797641699989999--999999999999766999998899999517-----267206------------313340555
Q ss_pred CHHH
Q ss_conf 0023
Q gi|254780392|r 372 TGAM 375 (494)
Q Consensus 372 TGa~ 375 (494)
||-.
T Consensus 63 TGEs 66 (113)
T 2hc8_A 63 SGEP 66 (113)
T ss_dssp HCCS
T ss_pred CCCC
T ss_conf 4996
No 54
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, hydrolase; 2.01A {Thermotoga maritima MSB8} SCOP: b.49.3.1 c.56.5.4
Probab=21.25 E-value=11 Score=16.37 Aligned_cols=22 Identities=0% Similarity=-0.028 Sum_probs=14.0
Q ss_pred ECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 0898999999998998569717
Q gi|254780392|r 388 ANNDVLAEQLLSSGLSTGELLW 409 (494)
Q Consensus 388 ~n~~~~~~~~~~a~~~~ge~~w 409 (494)
..+..+...+....+..+-...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~ 274 (340)
T 2fvg_A 253 VIPKEIFQTIVDTAKNNDIPFQ 274 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCE
T ss_pred CCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6770455565689998399840
No 55
>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=21.21 E-value=28 Score=13.41 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=9.8
Q ss_pred CCEEEEECCEEEC
Q ss_conf 5126630211200
Q gi|254780392|r 253 QPLAFIGKGVVFD 265 (494)
Q Consensus 253 ~piaLVGKGvTFD 265 (494)
+-+.++||||-|-
T Consensus 20 ~E~Iv~GkGIGF~ 32 (55)
T 1l1c_A 20 KELVVMGRGLAFQ 32 (55)
T ss_dssp CEEEEECSSSSTT
T ss_pred CEEEEEEECCEEC
T ss_conf 9999997141337
No 56
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=21.14 E-value=13 Score=15.67 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHCCCCCCEEEEEC
Q ss_conf 99974707763024895888634
Q gi|254780392|r 318 GSSAQRPGDIVRSMSGQTIEVIN 340 (494)
Q Consensus 318 ~~~a~~pgdvi~~~~G~tvei~n 340 (494)
.+.+|+-||+|+ |+|++-+.+.
T Consensus 4 ~g~~Y~~Gd~Vt-y~G~~Y~c~q 25 (45)
T 1ed7_A 4 VNTAYTAGQLVT-YNGKTYKCLQ 25 (45)
T ss_dssp SSEEECTTCCEE-ETTEEECBCS
T ss_pred CCCEEECCCEEE-ECCEEEEEEE
T ss_conf 895581899999-8991889975
No 57
>1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=20.60 E-value=33 Score=12.90 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 2356899999999870878728998641
Q gi|254780392|r 285 GGAAAVTGLLHVLAERKAKINAIGVLAL 312 (494)
Q Consensus 285 ~GaAav~g~~~aia~l~~~v~v~~~~~~ 312 (494)
|++.+..|+.+.+-...+.+.|+++.|.
T Consensus 278 GtGGt~~Gi~~~lk~~~p~~~ii~v~p~ 305 (435)
T 1jbq_A 278 GTGGTITGIARKLKEKCPGCRIIGVDPE 305 (435)
T ss_dssp SSSHHHHHHHHHHHHHCTTCEEEEEEET
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 8873067999999751986479996036
No 58
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=20.55 E-value=22 Score=14.13 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 12356899999999870878728998641026
Q gi|254780392|r 284 LGGAAAVTGLLHVLAERKAKINAIGVLALVEN 315 (494)
Q Consensus 284 M~GaAav~g~~~aia~l~~~v~v~~~~~~~EN 315 (494)
..+...++-+...+....++.+.....+..+.
T Consensus 174 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 205 (346)
T 1vho_A 174 RASCGVLVKVLEFLKRYDHPWDVYVVFSVQEE 205 (346)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSEEEEEEECTTS
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 26189999999999863457664222231146
No 59
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum 3D7} SCOP: c.1.2.2
Probab=20.31 E-value=33 Score=12.86 Aligned_cols=10 Identities=20% Similarity=-0.057 Sum_probs=3.4
Q ss_pred HCCCEEEEEC
Q ss_conf 1697489941
Q gi|254780392|r 99 EDKNIEIFVD 108 (494)
Q Consensus 99 ~~~~~~v~i~ 108 (494)
..+...+.++
T Consensus 29 ~~g~d~iHiD 38 (227)
T 1tqx_A 29 SLGAEWIHLD 38 (227)
T ss_dssp HTTCSEEEEE
T ss_pred HCCCCEEEEE
T ss_conf 7499989996
No 60
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=20.25 E-value=11 Score=16.16 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE
Q ss_conf 98641026689997-47077630248958886
Q gi|254780392|r 308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIEV 338 (494)
Q Consensus 308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei 338 (494)
-+-.+.++.|...| .+|||+|..-||+.|.-
T Consensus 40 ~V~~v~~~s~A~~~GL~~GD~I~~Ing~~v~~ 71 (96)
T 2ego_A 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEG 71 (96)
T ss_dssp EEEEECTTCHHHHTTCCTTCEEEEETTEECTT
T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECCC
T ss_conf 99998999979985898899999999999889
No 61
>1qiu_A Adenovirus fibre; fibre protein, triple beta-spiral; 2.4A {Human adenovirus 2} SCOP: b.21.1.1 b.83.1.1
Probab=20.15 E-value=27 Score=13.46 Aligned_cols=11 Identities=27% Similarity=0.165 Sum_probs=5.1
Q ss_pred CCCCCCCHHHH
Q ss_conf 17677686788
Q gi|254780392|r 408 LWRMPMNEEYN 418 (494)
Q Consensus 408 ~w~lPl~~~y~ 418 (494)
++=||=...|-
T Consensus 177 ~~FMPNt~aYP 187 (264)
T 1qiu_A 177 VGFMPNLLAYP 187 (264)
T ss_dssp GGGSBCTTTSC
T ss_pred HHHCCCCCCCC
T ss_conf 40286553058
No 62
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=20.09 E-value=34 Score=12.83 Aligned_cols=34 Identities=32% Similarity=0.245 Sum_probs=16.9
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCC
Q ss_conf 99987087872899864102668999747077630248
Q gi|254780392|r 295 HVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMS 332 (494)
Q Consensus 295 ~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~ 332 (494)
.++.+|+++ ||..+..=+|+...-..| |+|+++.
T Consensus 107 ~~~~~L~L~-nv~v~~~R~e~~~~~~~f---D~v~sRA 140 (207)
T 1jsx_A 107 QVQHELKLE-NIEPVQSRVEEFPSEPPF---DGVISRA 140 (207)
T ss_dssp HHHHHTTCS-SEEEEECCTTTSCCCSCE---EEEECSC
T ss_pred HHHHHCCCC-CCEEEEEHHHHCCCCCCH---HHHHHHH
T ss_conf 999973998-730452134531444323---2555643
No 63
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=20.05 E-value=27 Score=13.47 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=30.5
Q ss_pred EEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEEC
Q ss_conf 98641026689997-470776302489588863478664036523678875207961355211
Q gi|254780392|r 308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLA 369 (494)
Q Consensus 308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~A 369 (494)
.|-...+|.|...+ .+|||.|-+-||..|+= +-..+++..-+ . .++..+.+-
T Consensus 44 ~V~~V~~~s~A~~~gl~~GD~Il~VNg~~v~~--------~~~~~~~~llr-~-~~~~~l~v~ 96 (114)
T 1x5n_A 44 FISHVKPGSLSAEVGLEIGDQIVEVNGVDFSN--------LDHKEAVNVLK-S-SRSLTISIV 96 (114)
T ss_dssp EEEEECTTSTTTTTTCCTTCEEEEETTEETTS--------CCTTHHHHHHH-H-CSSEEEEEC
T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECCC--------CCHHHHHHHHH-C-CCCEEEEEE
T ss_conf 99998489978857999999999999999899--------98999999986-8-998799999
Done!