RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
(494 letters)
>gnl|CDD|179165 PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.
Length = 485
Score = 600 bits (1550), Expect = e-172
Identities = 202/494 (40%), Positives = 296/494 (59%), Gaps = 11/494 (2%)
Query: 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60
M+ K + L + + S A S + + +F G++ L +
Sbjct: 1 MEFSVKSGSPEKQKSDCLVVGVPERLSPAAEQLDKASDGYLSALLKRGDFKGKAGETLLL 60
Query: 61 LAPVDCVWDRLVVAGIGDPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEI 119
A + +R+++ G+G + + KA G A +++ K E + + E
Sbjct: 61 HAVPGVLAERVLLVGLGKEEELDEEQLRKAAGKAARALKKTKVKEAVIFLTELHTYWK-A 119
Query: 120 RDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVN 179
R G +L Y FD+YK+KK R E + V + ++ + +A +++ +GVN
Sbjct: 120 RAAAEGALLGLYRFDKYKSKKEP---RRPLEKLVFL-VPTRLTEAEKAIAHGEAIAEGVN 175
Query: 180 LARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPP 238
LARD++NEP N+L ++ ++L + G+ VE+LD++ M KLGM ALLAV QGS+ PP
Sbjct: 176 LARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPP 235
Query: 239 YLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLA 298
L V++++GG P+A +GKG+ FD+GGIS+KP+ GM+EMK D+GGAAAV G + LA
Sbjct: 236 RLIVLEYKGGKK---PIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALA 292
Query: 299 ERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRT 358
E K +N +GV+A ENMP +A RPGD++ SMSG+TIEV+NTDAEGRL+LADAL Y
Sbjct: 293 ELKLPVNVVGVVAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAER 352
Query: 359 HYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYN 418
+ P +ID+ATLTGA VV+LG+ AGL +NND LA++LL +G +GE WR+P+ +EY
Sbjct: 353 -FKPDAIIDVATLTGACVVALGHHTAGLMSNNDELADELLKAGEESGERAWRLPLGDEYQ 411
Query: 419 KLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASG 478
+ ++S FADM NIGGR G+I AA FL +FV+ WAH+DIAG A N A+G
Sbjct: 412 EQLKSPFADMANIGGRPGGAITAACFLSRFVEKYPWAHLDIAGTAWNSKAWGYNPKGATG 471
Query: 479 FGVRLLDEFVRAFY 492
GVRLL +F+
Sbjct: 472 RGVRLLVQFLENRA 485
>gnl|CDD|185602 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 252 bits (646), Expect = 1e-67
Identities = 141/377 (37%), Positives = 207/377 (54%), Gaps = 19/377 (5%)
Query: 131 YTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVA--DIQSVVKGVNLARDIINEP 188
Y +D+ K+ + + + V+ + Q++ G N+ +NE
Sbjct: 160 YQYDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVIDSSNAQAIAAG-NIIGHCVNEA 218
Query: 189 ANV--LGTDE-----FCKQVRK-LESLGVAVE-ILDKEAMHKLGMNALLAVAQGSSRPPY 239
N+ L DE + + ++K L LG+ V +L E + G+N + V +GS PY
Sbjct: 219 RNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPY 278
Query: 240 LAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAE 299
L V ++ G A +GKGV FD GG++IKP ME M D+ GAA V L +A+
Sbjct: 279 LVVFEYIGNPRSSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAK 338
Query: 300 RKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTH 359
+ +N + + L EN G + P I+ S G T+EV+NTDAEGRL+LAD L Y +
Sbjct: 339 LQLPVNVVAAVGLAENAIGPESYHPSSIITSRKGLTVEVLNTDAEGRLVLADTLTYVQKD 398
Query: 360 Y----NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNE 415
P +ID+ATLTGA++V LG+ AGLF+N+ LA+ L++SG S+GE LW MP+ +
Sbjct: 399 AKLDKKPTTIIDIATLTGAIIVGLGSRRAGLFSNDAHLAQSLMASGRSSGEELWPMPIGD 458
Query: 416 EYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQ-DASWAHIDIAGVATGG-YPKEIN 472
E+ ++ AD+ N+ GR AGS AA FL FV+ + WAH+DIAGV GG PK
Sbjct: 459 EHKDAMKGGIADLINVASGREAGSCTAAAFLSNFVEPEVKWAHLDIAGVGMGGDKPKGFQ 518
Query: 473 QSWASGFGVRLLDEFVR 489
+ A GFGV+LL ++ R
Sbjct: 519 PAGAPGFGVQLLVDYFR 535
>gnl|CDD|179915 PRK05015, PRK05015, aminopeptidase B; Provisional.
Length = 424
Score = 220 bits (562), Expect = 9e-58
Identities = 124/324 (38%), Positives = 178/324 (54%), Gaps = 22/324 (6%)
Query: 176 KGVNLARDIINEPANVLGTDEFCKQ-VRKLESLG---VAVEILDKEAMHKLGMNALLAVA 231
K ++ RD IN PA LG ++ ++ + S+ V+ I+ E + + G + V
Sbjct: 101 KIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVG 160
Query: 232 QGSSRPPYLAVMKWEGGDSEEQPL--AFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAA 289
+GS RPP L + + + P+ +GKG+ FD+GG SIKPS GM+ MK D+GGAA
Sbjct: 161 RGSERPPVLLALDYNPTGDPDAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAAT 220
Query: 290 VTGLLHVLAER--KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRL 347
VTG L + R ++ L EN+ +A + GDI+ +G+T+EV+NTDAEGRL
Sbjct: 221 VTGALALAITRGLNKRVKLF--LCCAENLISGNAFKLGDIITYRNGKTVEVMNTDAEGRL 278
Query: 348 ILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGEL 407
+LAD L + P L+ID ATLTGA +LGN Y LF+ +D LA++LL+S E
Sbjct: 279 VLADGLIDA-SEQGPPLIIDAATLTGAAKTALGNDYHALFSFDDELAQRLLASAAQENEP 337
Query: 408 LWRMPMNEEYNKLIESKFADMKNI--GGRGAGSIVAAQFLEKFVQD--ASWAHIDIAGVA 463
WR+P+ E + + S FAD+ N G AG+ AA FL FV++ W HID +
Sbjct: 338 FWRLPLAEFHRSQLPSNFADLANSGSGAGPAGASTAAGFLSHFVENYQQGWLHIDCSAT- 396
Query: 464 TGGYPKEINQSW---ASGFGVRLL 484
Y K W A+G GVR +
Sbjct: 397 ---YRKSAVDQWAAGATGLGVRTI 417
>gnl|CDD|181649 PRK09103, PRK09103, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 758
Score = 29.6 bits (67), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 406 ELLWRMPMNEEYNKL--IESKFAD 427
ELLW MP N+ Y +L I KF D
Sbjct: 664 ELLWEMPNNDGYLQLVGIMQKFVD 687
>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 28.6 bits (64), Expect = 3.8
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 139 KKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINE 187
K E+ P + + +++ +T+ I + Q + + D I +
Sbjct: 1407 NKHEAIEPSNSKEVNIIKITDNINKCKQYSNEAMETENKADENNDSIIK 1455
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 28.6 bits (63), Expect = 4.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 95 SYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQY 136
S ++D I DV EY ITK EI L F L+ +++
Sbjct: 264 SITKKDNQGMISRDVSEYMITKEEISLKELDFKLRKQLIEKH 305
>gnl|CDD|177888 PLN02245, PLN02245, ATP phosphoribosyl transferase.
Length = 403
Score = 27.8 bits (62), Expect = 6.4
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 252 EQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER-KAKINAIGVL 310
E L I GVV ++ + + + E KG L ++H + ER +A + A G
Sbjct: 252 ENNLKEIEGGVVLESQAVLVASRRALLERKGALE-------VVHEILERLEAHLRAEGQF 304
Query: 311 ALVENMPGSSAQRPGDIVRS------MSGQTIEVINTDAEGR 346
+ NM GSSA+ + V S + G TI + +G+
Sbjct: 305 TVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGK 346
>gnl|CDD|177423 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional.
Length = 576
Score = 27.8 bits (62), Expect = 6.4
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 20/72 (27%)
Query: 401 GLSTGELLWRMPMNEEYNKLIESKFADMKNIG----GRGAGSIVAAQFLEKFVQDASWAH 456
G+ T +L W + I S A + IG G G+ V FL+K+ Q+
Sbjct: 45 GIPTEDLPWMSVIQP-----ITS--AAISGIGQSPTGIVEGTHVYGHFLDKWKQN----- 92
Query: 457 IDIAGVATGGYP 468
G+ G Y
Sbjct: 93 ----GLILGTYG 100
>gnl|CDD|132104 TIGR03060, PS_II_psb29, photosystem II biogenesis protein Psp29.
Psp29, originally designated sll1414 in Synechocystis
6803, is found universally in Cyanobacteria and in
Arabidopsis. It was isolated and partially sequenced
from purified photosystem II (PS II) in Synechocystis.
While its function is unknown, mutant studies show an
impairment in photosystem II biogenesis and/or
stability, rather than in PS II core function.
Length = 214
Score = 27.3 bits (61), Expect = 9.7
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 274 SHGMEEMKGDL-------GGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGD 326
G++E+ L GG + G+ + +++ AIG+ +L+E D
Sbjct: 104 GKGLDEILSWLTQANLSNGGGDTLQGIAGRHKFKYSRLFAIGLYSLLEEAAPDKDIDEED 163
Query: 327 IVRSMSGQTIEVINTDAE 344
+ + + E + +
Sbjct: 164 LNEILK-ELSEALGLSYD 180
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,166,443
Number of extensions: 546228
Number of successful extensions: 1091
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1077
Number of HSP's successfully gapped: 22
Length of query: 494
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,898,497
Effective search space: 1547703309
Effective search space used: 1547703309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)