RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] (494 letters) >d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal domain {Escherichia coli, PepA [TaxId: 562]} Length = 325 Score = 304 bits (779), Expect = 1e-83 Identities = 143/323 (44%), Positives = 209/323 (64%), Gaps = 9/323 (2%) Query: 174 VVKGVNLARDIINEPANVLGTDEFCKQVRKLE---SLGVAVEILDKEAMHKLGMNALLAV 230 + G+ A+D+ N P N+ Q R+L S V ++ ++ M +LGM++ LAV Sbjct: 2 IAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAV 61 Query: 231 AQGSSRPPYLAVMKWEG-GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAA 289 QGS ++V++++G + +P+ +GKG+ FD+GGISIKPS GM+EMK D+ GAAA Sbjct: 62 GQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAA 121 Query: 290 VTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLIL 349 V G++ ++AE + IN IGVLA ENMPG A RPGD++ +MSGQT+EV+NTDAEGRL+L Sbjct: 122 VYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVL 181 Query: 350 ADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLW 409 D L Y + P +ID+ATLTGA V++LG+ GL AN++ LA +L+++ +G+ W Sbjct: 182 CDVLTYVE-RFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAW 240 Query: 410 RMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469 R+P+ +EY + +ES FADM NIGGR G+I A FL +F + +WAH+DIAG A Sbjct: 241 RLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKA 300 Query: 470 EINQSWASGFGVRLLDEFVRAFY 492 + A+G V LL +F+ Sbjct: 301 K----GATGRPVALLAQFLLNRA 319 >d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 325 Score = 283 bits (726), Expect = 2e-77 Identities = 131/322 (40%), Positives = 192/322 (59%), Gaps = 7/322 (2%) Query: 176 KGVNLARDIINEPANVLGTDEFCKQVRKL---ESLGVAVEILDKEAMHKLGMNALLAVAQ 232 G NLAR ++ PAN + +F + V + S+ V I K + + M + L+VA+ Sbjct: 3 SGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAK 62 Query: 233 GSSRPPYLAVMKWE-GGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVT 291 GS PP + ++ ++ E PL F+GKG+ FD+GGISIK + M+ M+ D+GGAA + Sbjct: 63 GSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATIC 122 Query: 292 GLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILAD 351 + A+ IN +G+ L ENMP A +PGD+VR+ +G+TI+V NTDAEGRLILAD Sbjct: 123 SAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILAD 182 Query: 352 ALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRM 411 AL Y +NP ++I+ ATLTGAM ++LG+ G+F N+ L +L + + TG+ +WRM Sbjct: 183 ALCYAH-TFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRM 241 Query: 412 P-MNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469 P ++I+ + AD+ NIG R AG+ AA FL++FV WAH+DIAGV T Sbjct: 242 PLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEV 301 Query: 470 EINQSWASGFGVRLLDEFVRAF 491 + +G R L EF+ F Sbjct: 302 PYLRKGMAGRPTRTLIEFLFRF 323 >d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]} Length = 178 Score = 59.5 bits (143), Expect = 6e-10 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 7/161 (4%) Query: 1 MDIKFSFAKNPSIKQEGLAILL--KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHL 58 M+ + + + + S +A S + + G+ L Sbjct: 1 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTL 60 Query: 59 NILAPVDCVWDRLVVAGIGDPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKA 117 + + + +R+++ G G R+ + + + + + + ++E + E + Sbjct: 61 LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGR 120 Query: 118 E----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISV 154 +R V Y+FDQ KT K E P K +V Sbjct: 121 NNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNV 161 >d1lama2 c.50.1.1 (A:1-159) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 159 Score = 39.4 bits (91), Expect = 8e-04 Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 17/120 (14%) Query: 37 SPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRD----------ANFSW 86 + +++ ++ + + +VV G+G + Sbjct: 31 VSGKLREILNISGPPLKAGKTR-TFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENI 89 Query: 87 LKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSP 146 A + I++ + + VD + G +L Y +D K K++ S Sbjct: 90 RAAVAAGCRQIQDLEIPSVEVDPCGD------AQAAAEGAVLGLYEYDDLKQKRKVVVSA 143 >d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]} Length = 240 Score = 30.7 bits (69), Expect = 0.25 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 9/62 (14%) Query: 246 EGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKIN 305 G + P A + GGIS + G L GAAA L E +N Sbjct: 53 YGAPYNQFPFAMLEAN----KGGIS-----DWGTICGALYGAAATFSLFWGRKEVHPMVN 103 Query: 306 AI 307 + Sbjct: 104 EL 105 >d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]} Length = 535 Score = 27.4 bits (59), Expect = 2.5 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 13/59 (22%) Query: 344 EGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDV-------LAE 395 L ALW +++NP T A+ ++G +Y LF + + LAE Sbjct: 3 NKTLYWGGALWSPPSNWNPF------TPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAE 55 >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141 Score = 26.5 bits (58), Expect = 5.0 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 170 DIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLA 229 + V + + PA + + K + ++ + + KLG NA+L Sbjct: 56 WMGKGVLHAVKNVNDVIAPA-FVKANIDVKDQKAVDDFLI--SLDGTANKSKLGANAILG 112 Query: 230 VAQGSSR 236 V+ +SR Sbjct: 113 VSLAASR 119 >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 258 Score = 25.9 bits (56), Expect = 7.1 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Query: 260 KGVVFDTGGISIKPSHGMEEMKGDLGGA---AAVTGLLHVLAE 299 +F TG IK G E +LGGA A +G H A Sbjct: 192 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAAS 234 >d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]} Length = 1119 Score = 25.9 bits (56), Expect = 8.6 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 8/45 (17%) Query: 173 SVVKGVNLARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKE 217 +++KG ++ + E VL V++L++L + V+ LD++ Sbjct: 1069 AIIKGEDVPEPSVPESFRVL--------VKELQALALDVQTLDEK 1105 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.134 0.385 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,794,873 Number of extensions: 84459 Number of successful extensions: 216 Number of sequences better than 10.0: 1 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 10 Length of query: 494 Length of database: 2,407,596 Length adjustment: 89 Effective length of query: 405 Effective length of database: 1,185,626 Effective search space: 480178530 Effective search space used: 480178530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.3 bits)