RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (494 letters)



>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
           domain {Escherichia coli, PepA [TaxId: 562]}
          Length = 325

 Score =  304 bits (779), Expect = 1e-83
 Identities = 143/323 (44%), Positives = 209/323 (64%), Gaps = 9/323 (2%)

Query: 174 VVKGVNLARDIINEPANVLGTDEFCKQVRKLE---SLGVAVEILDKEAMHKLGMNALLAV 230
           +  G+  A+D+ N P N+        Q R+L    S  V   ++ ++ M +LGM++ LAV
Sbjct: 2   IAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAV 61

Query: 231 AQGSSRPPYLAVMKWEG-GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAA 289
            QGS     ++V++++G    + +P+  +GKG+ FD+GGISIKPS GM+EMK D+ GAAA
Sbjct: 62  GQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAA 121

Query: 290 VTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLIL 349
           V G++ ++AE +  IN IGVLA  ENMPG  A RPGD++ +MSGQT+EV+NTDAEGRL+L
Sbjct: 122 VYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVL 181

Query: 350 ADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLW 409
            D L Y    + P  +ID+ATLTGA V++LG+   GL AN++ LA +L+++   +G+  W
Sbjct: 182 CDVLTYVE-RFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAW 240

Query: 410 RMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469
           R+P+ +EY + +ES FADM NIGGR  G+I A  FL +F +  +WAH+DIAG A      
Sbjct: 241 RLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKA 300

Query: 470 EINQSWASGFGVRLLDEFVRAFY 492
           +     A+G  V LL +F+    
Sbjct: 301 K----GATGRPVALLAQFLLNRA 319


>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 325

 Score =  283 bits (726), Expect = 2e-77
 Identities = 131/322 (40%), Positives = 192/322 (59%), Gaps = 7/322 (2%)

Query: 176 KGVNLARDIINEPANVLGTDEFCKQVRKL---ESLGVAVEILDKEAMHKLGMNALLAVAQ 232
            G NLAR ++  PAN +   +F + V +     S+   V I  K  + +  M + L+VA+
Sbjct: 3   SGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAK 62

Query: 233 GSSRPPYLAVMKWE-GGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVT 291
           GS  PP    + ++   ++ E PL F+GKG+ FD+GGISIK +  M+ M+ D+GGAA + 
Sbjct: 63  GSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATIC 122

Query: 292 GLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILAD 351
             +   A+    IN +G+  L ENMP   A +PGD+VR+ +G+TI+V NTDAEGRLILAD
Sbjct: 123 SAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILAD 182

Query: 352 ALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRM 411
           AL Y    +NP ++I+ ATLTGAM ++LG+   G+F N+  L  +L  + + TG+ +WRM
Sbjct: 183 ALCYAH-TFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRM 241

Query: 412 P-MNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469
           P       ++I+ + AD+ NIG  R AG+  AA FL++FV    WAH+DIAGV T     
Sbjct: 242 PLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEV 301

Query: 470 EINQSWASGFGVRLLDEFVRAF 491
              +   +G   R L EF+  F
Sbjct: 302 PYLRKGMAGRPTRTLIEFLFRF 323


>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase
           A), N-terminal domain {Escherichia coli, PepA [TaxId:
           562]}
          Length = 178

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 7/161 (4%)

Query: 1   MDIKFSFAKNPSIKQEGLAILL--KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHL 58
           M+           +   + + +      S +A      S   +   +      G+    L
Sbjct: 1   MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTL 60

Query: 59  NILAPVDCVWDRLVVAGIGDPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKA 117
            +    + + +R+++ G G  R+ +   + +      + + +  ++E    + E  +   
Sbjct: 61  LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGR 120

Query: 118 E----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISV 154
                +R  V       Y+FDQ KT K E   P  K   +V
Sbjct: 121 NNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNV 161


>d1lama2 c.50.1.1 (A:1-159) Leucine aminopeptidase (Aminopeptidase
           A), N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 159

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 17/120 (14%)

Query: 37  SPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRD----------ANFSW 86
               +   +++     ++         +   +  +VV G+G                 + 
Sbjct: 31  VSGKLREILNISGPPLKAGKTR-TFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENI 89

Query: 87  LKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSP 146
             A  +    I++ +   + VD           +    G +L  Y +D  K K++   S 
Sbjct: 90  RAAVAAGCRQIQDLEIPSVEVDPCGD------AQAAAEGAVLGLYEYDDLKQKRKVVVSA 143


>d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c
           {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
          Length = 240

 Score = 30.7 bits (69), Expect = 0.25
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 9/62 (14%)

Query: 246 EGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKIN 305
            G    + P A +        GGIS         + G L GAAA   L     E    +N
Sbjct: 53  YGAPYNQFPFAMLEAN----KGGIS-----DWGTICGALYGAAATFSLFWGRKEVHPMVN 103

Query: 306 AI 307
            +
Sbjct: 104 EL 105


>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA)
           {Thermotoga maritima [TaxId: 2336]}
          Length = 535

 Score = 27.4 bits (59), Expect = 2.5
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 13/59 (22%)

Query: 344 EGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDV-------LAE 395
              L    ALW   +++NP       T   A+  ++G +Y  LF  + +       LAE
Sbjct: 3   NKTLYWGGALWSPPSNWNPF------TPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAE 55


>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 26.5 bits (58), Expect = 5.0
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 170 DIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLA 229
            +   V       + +  PA  +  +   K  + ++   +   +       KLG NA+L 
Sbjct: 56  WMGKGVLHAVKNVNDVIAPA-FVKANIDVKDQKAVDDFLI--SLDGTANKSKLGANAILG 112

Query: 230 VAQGSSR 236
           V+  +SR
Sbjct: 113 VSLAASR 119


>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
           subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 258

 Score = 25.9 bits (56), Expect = 7.1
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 260 KGVVFDTGGISIKPSHGMEEMKGDLGGA---AAVTGLLHVLAE 299
              +F TG   IK   G E    +LGGA    A +G  H  A 
Sbjct: 192 TSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAAS 234


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
            [TaxId: 274]}
          Length = 1119

 Score = 25.9 bits (56), Expect = 8.6
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 173  SVVKGVNLARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKE 217
            +++KG ++    + E   VL        V++L++L + V+ LD++
Sbjct: 1069 AIIKGEDVPEPSVPESFRVL--------VKELQALALDVQTLDEK 1105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,794,873
Number of extensions: 84459
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 10
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)