BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (494 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 494

 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/494 (100%), Positives = 494/494 (100%)

Query: 1   MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60
           MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI
Sbjct: 1   MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60

Query: 61  LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIR 120
           LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIR
Sbjct: 61  LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIR 120

Query: 121 DLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNL 180
           DLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNL
Sbjct: 121 DLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNL 180

Query: 181 ARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYL 240
           ARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYL
Sbjct: 181 ARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYL 240

Query: 241 AVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER 300
           AVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER
Sbjct: 241 AVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER 300

Query: 301 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY 360
           KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY
Sbjct: 301 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY 360

Query: 361 NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKL 420
           NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKL
Sbjct: 361 NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKL 420

Query: 421 IESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFG 480
           IESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFG
Sbjct: 421 IESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFG 480

Query: 481 VRLLDEFVRAFYEK 494
           VRLLDEFVRAFYEK
Sbjct: 481 VRLLDEFVRAFYEK 494


>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 587

 Score = 30.0 bits (66), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 19/116 (16%)

Query: 359 HYNPHLMIDLATLTGAMVVSLGNIYAGLFA-NNDVLAEQLLSSGLSTGELLWR---MPMN 414
           H NP+L + L  + G     L N+ AG  A  ND   +++ SS   TG   WR   +P  
Sbjct: 445 HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDF--KEVASSFHITGWRWWRYIILPGI 502

Query: 415 EEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKE 470
             Y          +   GG    SIV+        + ASW HI +     G Y  E
Sbjct: 503 FPYYVT-----GAITACGGAWNASIVS--------EVASWGHIHLRTTGLGAYIAE 545


>gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 296

 Score = 27.3 bits (59), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 357 RTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEE 416
           R H  P   ++   L    VVS+GN +A  F  +D+    L     S G LL + PM  E
Sbjct: 143 RFHIGP---VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL----ASFGNLLAKHPMFSE 195


>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 160

 Score = 25.4 bits (54), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 251 EEQPLAFIGKGVVFDTGGISIKPS 274
           +EQ  + +G  V FDT   SI+P+
Sbjct: 41  QEQFSSSVGDSVFFDTSSYSIRPA 64


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 24.3 bits (51), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 26  FSDVAGLSLIGSPSIV----MRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRD 81
           FS V      G P++V    MR   V   +G    ++N L PVD V D  ++      +D
Sbjct: 86  FSRVLMQDFTGVPAVVDLAAMRDAIV--VLGGDPQNINPLVPVDLVIDHSLIVDYSGNKD 143

Query: 82  A 82
           A
Sbjct: 144 A 144


>gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 306

 Score = 24.3 bits (51), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 63  PVDCVWDRLVVAGIGDPRDANFSWLKAG 90
           P  C    ++V  +G PR     W+K G
Sbjct: 199 PEICRTADILVVAVGRPRMVQVDWIKTG 226


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,399
Number of Sequences: 1233
Number of extensions: 12685
Number of successful extensions: 43
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 10
length of query: 494
length of database: 328,796
effective HSP length: 78
effective length of query: 416
effective length of database: 232,622
effective search space: 96770752
effective search space used: 96770752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)