HHsearch alignment for GI: 254780395 and conserved domain: cd07306
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=96.69 E-value=0.041 Score=31.15 Aligned_cols=104 Identities=14% Similarity=0.260 Sum_probs=79.8
Q ss_pred CEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEE
Q ss_conf 37999988436777999999861676606688999999647408999998722675446663258998999972565699
Q gi|254780395|r 620 DYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSA 699 (762)
Q Consensus 620 D~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~ 699 (762)
T Consensus 130 p~~~~s~v~g~~~~~~G~~~~yd~~~~~~~k~~~~~gy~~~d~~~~l~l---~--------n~~~~~~S~~~~v~~~~~v 198 (276)
T cd07306 130 PLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKL---N--------NGKTLRGSYFHKVSPRLAV 198 (276)
T ss_pred CEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEE---C--------CCCEEEEEEEEECCCCEEE
T ss_conf 7657999964676798999998433483412789999845881899997---6--------9778999999993876489
Q ss_pred EEEEEECCCCCCCEEEEEEEEECCE-----------EEEEEEEEEC
Q ss_conf 9999951654541225656996466-----------9999999971
Q gi|254780395|r 700 DASLKWNMRAELPSHSIGLAYQNDC-----------ATVKIIYKNE 734 (762)
Q Consensus 700 ~~~~~ydl~~~~~~~~~Gl~Y~~~C-----------w~~~l~y~r~ 734 (762)
T Consensus 199 a~~~~~~~~~~~~~~~vG~~y~ld~~t~vKaKvn~~g~~gl~yq~~ 244 (276)
T cd07306 199 GAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHK 244 (276)
T ss_pred EEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 9999995289971899999998079978999997897399999995