Query gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 762 No_of_seqs 218 out of 1458 Neff 8.8 Searched_HMMs 33803 Date Wed Jun 1 12:46:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780395.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2r19_A Protein YHBN; beta-jel 99.7 1.3E-17 3.9E-22 134.3 10.6 142 45-199 3-155 (159) 2 >2r19_A Protein YHBN; beta-jel 98.4 1.1E-06 3.3E-11 61.2 8.4 105 80-196 9-126 (159) 3 >3emn_X Voltage-dependent anio 95.8 0.1 3E-06 28.0 18.6 90 621-721 149-238 (295) 4 >2wjr_A Probable N-acetylneura 87.6 1.3 3.9E-05 20.6 22.0 60 646-705 124-188 (214) 5 >3prn_A Porin; integral membra 73.9 4 0.00012 17.4 18.3 95 620-721 193-288 (289) 6 >2f1c_X OMPG, outer membrane p 71.8 4.5 0.00013 17.1 20.5 28 680-707 231-258 (286) 7 >2jmm_A Outer membrane protein 71.5 4.6 0.00014 17.0 13.3 101 621-721 26-149 (156) 8 >1p4t_A Outer membrane protein 53.0 9.7 0.00029 14.8 14.2 24 684-707 109-132 (155) 9 >1qjp_A Outer membrane protein 52.5 9.9 0.00029 14.8 15.1 25 684-708 122-146 (171) 10 >3dwo_X Probable outer membran 45.9 13 0.00037 14.1 19.3 92 646-737 334-445 (451) 11 >2hqr_A Putative transcription 44.3 10 0.00031 14.6 1.4 29 180-208 5-33 (43) 12 >2k0l_A Outer membrane protein 42.4 14 0.00042 13.7 13.1 22 685-706 145-166 (216) 13 >3bs0_A TODX; beta barrel, out 42.4 14 0.00042 13.7 21.5 64 643-706 328-399 (439) 14 >2por_A Porin; HET: C8E; 1.80A 41.3 15 0.00043 13.6 11.8 71 648-721 229-300 (301) 15 >1i78_A Protease VII; integral 38.4 16 0.00048 13.3 21.5 49 684-732 232-296 (297) 16 >1m1c_A GAG protein, major coa 37.2 10 0.0003 14.7 0.5 19 199-217 100-118 (118) 17 >2qom_A Serine protease ESPP; 36.4 17 0.00051 13.1 22.5 83 441-527 125-208 (285) 18 >2zjt_A DNA gyrase subunit B; 22.1 30 0.0009 11.5 0.8 10 749-758 44-53 (55) 19 >3dwn_A Long-chain fatty acid 21.9 31 0.00091 11.5 18.2 61 650-710 326-394 (427) 20 >1esw_A Amylomaltase; (beta,al 20.4 24 0.0007 12.2 -0.1 20 222-241 4-23 (354) No 1 >>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:) Probab=99.75 E-value=1.3e-17 Score=134.25 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=113.4 Q ss_pred CCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEECCCCE-----------EEEECCEEEECCCCCEE Q ss_conf 7766660799920799976689799998799998996999518999863787-----------99973489983898789 Q gi|254780395|r 45 ETNRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHR-----------IIASGNIKLIEPDKRQI 113 (762) Q Consensus 45 ~~~~~~~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~~~~~-----------~~a~G~v~~~~~~g~~~ 113 (762) +.+.+.|+.|+||.|+|+...+.++|+|||+|.+++.+|+||+++|+++++. +.+.|+|++.+ ++..+ T Consensus 3 ~~~~~~~i~i~Ad~~~~~~~~~~~~~~GnV~i~~~~~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~~~~ 81 (159) T 2r19_A 3 TGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG-KPVEG 81 (159) T ss_dssp GGGGGSCEEEEESEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTS-CCEEE T ss_pred CCCCCCCEEEEECEEEEECCCCEEEEECCEEEEECCEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCC-CEEEE T ss_conf 76778997999565992356999999756899808679999899999778866425787513411899951688-33999 Q ss_pred EEEEEEEECCCCEEEEEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCE Q ss_conf 97069994302559998479997067502102468723975999987997313766577888508999669999677777 Q gi|254780395|r 114 HAEYLDITDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHT 193 (762) Q Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~ 193 (762) .|+++.++.+.+.+.+.+....... ...+.+..+ .+.++++.||+|.+++ |.|++.+.++.++++++. T Consensus 82 ~~~~~~y~~~~~~~~~~g~~~~~~~-~~~~~g~~~-----~~~~~~~~~t~~~~~~------~~~~~~~~~~~~~~~~~~ 149 (159) T 2r19_A 82 HASQMHYELAKDFVVLTGNAYLQQV-DSNIKGDKI-----TYLVKEQKMQAFSDKG------KRVTTVLVPSQLQDKNNK 149 (159) T ss_dssp ECSEEEEEGGGTEEEEEEEEEEEET-TEEEEEEEE-----EEETTTTEEEEECSSS------CCCCCCC----------- T ss_pred EEEEEEEECCCCEEEEECCEEEEEC-CCEEEECEE-----EEEECCCEEEEECCCC------CCEEEEECCCCCCCCCCC T ss_conf 9845799746888998067899958-999996789-----9991689999965899------945999998766768888 Q ss_pred EEEECC Q ss_conf 999442 Q gi|254780395|r 194 IRLEKP 199 (762) Q Consensus 194 ~~~~~a 199 (762) +.+.++ T Consensus 150 ~~a~~~ 155 (159) T 2r19_A 150 GQTPAQ 155 (159) T ss_dssp ------ T ss_pred CCCCCC T ss_conf 899767 No 2 >>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:) Probab=98.45 E-value=1.1e-06 Score=61.21 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=49.3 Q ss_pred CEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEEECCCCEEEEEE----------EEEEEECCCEEEEEEEEE Q ss_conf 9699951899986378799973489983898789970699943025599984----------799970675021024687 Q gi|254780395|r 80 GYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITDDFTNGIIKN----------LTIKIPADETYLTASSAQ 149 (762) Q Consensus 80 ~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~~ 149 (762) ...|.||++.||..++.+.|.|||++.++ +..+.|+++.++.+.+.+.+.. ..+.+......+.++... T Consensus 9 ~i~i~Ad~~~~~~~~~~~~~~GnV~i~~~-~~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~ 87 (159) T 2r19_A 9 PIHIESDQQSLDMQGNVVTFTGNVIVTQG-TIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMH 87 (159) T ss_dssp CEEEEESEEEEETTTTEEEEEEEEEEEET-TEEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEEECSEEE T ss_pred CEEEEECEEEEECCCCEEEEECCEEEEEC-CEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEE T ss_conf 97999565992356999999756899808-67999989999977886642578751341189995168833999984579 Q ss_pred E--CCCEEEE-EEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEE Q ss_conf 2--3975999-987997313766577888508999669999677777999 Q gi|254780395|r 150 I--IGQRTIF-DKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRL 196 (762) Q Consensus 150 ~--~~~~~~~-~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~ 196 (762) - ......+ .++.++.. .=.|++.+++++.+++.+.. T Consensus 88 y~~~~~~~~~~g~~~~~~~-----------~~~~~g~~~~~~~~~~~~t~ 126 (159) T 2r19_A 88 YELAKDFVVLTGNAYLQQV-----------DSNIKGDKITYLVKEQKMQA 126 (159) T ss_dssp EEGGGTEEEEEEEEEEEET-----------TEEEEEEEEEEETTTTEEEE T ss_pred EECCCCEEEEECCEEEEEC-----------CCEEEECEEEEEECCCEEEE T ss_conf 9746888998067899958-----------99999678999916899999 No 3 >>3emn_X Voltage-dependent anion-selective channel protein 1; VDAC1, eukaryotic membrane protein, beta barrel, acetylation, alternative splicing, apoptosis; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A (X:) Probab=95.80 E-value=0.1 Score=28.03 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=64.4 Q ss_pred EEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEE Q ss_conf 79999884367779999998616766066889999996474089999987226754466632589989999725656999 Q gi|254780395|r 621 YAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSAD 700 (762) Q Consensus 621 ~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~ 700 (762) .+...-....++|.+....-||.....+....+.++|..+.+.+++... ...++.++...++++++.+. T Consensus 149 ~~~~~~~~~~~~~~~G~e~~y~~~~~~~~~~~~~~~Y~~~~~~~s~~l~-----------~~~~~~~s~~~kv~~~~~~g 217 (295) T 3emn_X 149 SIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVN-----------DGTEFGGSIYQKVNKKLETA 217 (295) T ss_dssp EEEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEE-----------TTTEEEEEEEEECSSSEEEE T ss_pred EEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEEEEC-----------CCCEEEEEEEEECCCCEEEE T ss_conf 7999999822878999998852688873038999898379879999988-----------98828999999938605788 Q ss_pred EEEEECCCCCCCEEEEEEEEE Q ss_conf 999951654541225656996 Q gi|254780395|r 701 ASLKWNMRAELPSHSIGLAYQ 721 (762) Q Consensus 701 ~~~~ydl~~~~~~~~~Gl~Y~ 721 (762) +...++.........+|.+|. T Consensus 218 ~e~~~~~~~~~~~~~vG~~~~ 238 (295) T 3emn_X 218 VNLAWTAGNSNTRFGIAAKYQ 238 (295) T ss_dssp EEEEEETTEEEEEEEEEEEEC T ss_pred EEEEEECCCCCCEEEEEEEEE T ss_conf 899970268973899999999 No 4 >>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:) Probab=87.59 E-value=1.3 Score=20.60 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=27.6 Q ss_pred CEEEEEEEEEEEEC-CCCEEEEEEEEECC--CCCCC--CCCEEEEEEEEEEECCCCEEEEEEEEE Q ss_conf 60668899999964-74089999987226--75446--663258998999972565699999995 Q gi|254780395|r 646 WSTRRTDTTIDYTM-GSYEANISYTHIPA--YPLYA--YDARKTIQSRIKFKINDVLSADASLKW 705 (762) Q Consensus 646 ~~~~r~~~~~~~~~-~~~~~~~~y~~~~~--~~~~~--~~~~~~~~~~~~~~l~~~w~~~~~~~y 705 (762) ....|.++.+.|+. +.+.+...+.|... ..... .+...+.++.+.|++.++|.=...+.+ T Consensus 124 ~~~~r~d~~~~Y~~~~~~~~~y~~~y~~~~~~~~~~~~k~~~~e~n~~~~Yk~~~~w~PYvE~g~ 188 (214) T 2wjr_A 124 DNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDY 188 (214) T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEESSSCCCTTSSSEEEEEEEEEEECSSSSEEEEEEEEE T ss_pred CCCEEEEEEEEEEECCCEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEE T ss_conf 75178978998885456079987788852473564188774168999999985897323699998 No 5 >>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodopseudomonas blastica} (A:) Probab=73.91 E-value=4 Score=17.39 Aligned_cols=95 Identities=7% Similarity=0.081 Sum_probs=65.9 Q ss_pred CEEEEEEEECCCCEEEEEEEEECC-CCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEE Q ss_conf 379999884367779999998616-7660668899999964740899999872267544666325899899997256569 Q gi|254780395|r 620 DYAAAVRLSLSPKITFSTQTLINP-KDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLS 698 (762) Q Consensus 620 D~v~~~~~~~~~~~~l~~~~~~d~-~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~ 698 (762) -+.+.+.+.+.+ +.+........ ...+..-.++.+.|..+++.+.++|.+.... .+..++.+++.|+++++.. T Consensus 193 ~~~~~a~y~~~~-~~l~a~y~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~y~~~~~~-----~~~~~~~~g~~Y~l~k~~~ 266 (289) T 3prn_A 193 IAFVGAAYKFND-AGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRA-----GADTAYGIGADYQFAEGVK 266 (289) T ss_dssp EEEEEEEECCSS-SEEEEEEEEECTTSTTCSEEEEEEEEEETTEEEEEEEEEECST-----TCCCEEEEEEEEEEETTEE T ss_pred CCEEEEEEEECC-EEEEEEEEEECCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC-----CCCCEEEEEEEEECCCCEE T ss_conf 210001454054-2688899985037763048999999994888899999615777-----7641899999998489859 Q ss_pred EEEEEEECCCCCCCEEEEEEEEE Q ss_conf 99999951654541225656996 Q gi|254780395|r 699 ADASLKWNMRAELPSHSIGLAYQ 721 (762) Q Consensus 699 ~~~~~~ydl~~~~~~~~~Gl~Y~ 721 (762) +.+.+.++..++ ....+|+.|. T Consensus 267 ~yae~~~~~~~~-~~~~vG~r~~ 288 (289) T 3prn_A 267 VSGSVQSGFANE-TVADVGVRFD 288 (289) T ss_dssp EEEEEEECTTCC-EEEEEEEEEE T ss_pred EEEEEEEEECCC-CEEEEEEEEE T ss_conf 999999970898-2570575776 No 6 >>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:) Probab=71.76 E-value=4.5 Score=17.06 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=21.5 Q ss_pred CCEEEEEEEEEEECCCCEEEEEEEEECC Q ss_conf 6325899899997256569999999516 Q gi|254780395|r 680 DARKTIQSRIKFKINDVLSADASLKWNM 707 (762) Q Consensus 680 ~~~~~~~~~~~~~l~~~w~~~~~~~ydl 707 (762) ++...+.+++.|+++++|.+.+.+.|+- T Consensus 231 ~d~~~~~~G~ey~~~~~~~lr~gy~y~~ 258 (286) T 2f1c_X 231 HDFNRVGLFYGYDFQNGLSVSLEYAFEW 258 (286) T ss_dssp -CCEEEEEEEEEECSSSEEEEEEEEEEE T ss_pred CCCEEEEEEEEEEECCCEEEEEEEEEEE T ss_conf 7724999999634079669999999997 No 7 >>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:) Probab=71.50 E-value=4.6 Score=17.02 Aligned_cols=101 Identities=8% Similarity=0.109 Sum_probs=57.1 Q ss_pred EEEEEEEECCCCEEEEEEEEECC-CCCEEEEE--EEEEEEECC---CCE--EEEE--EEEECCCCCCC-----CCCE--- Q ss_conf 79999884367779999998616-76606688--999999647---408--9999--98722675446-----6632--- Q gi|254780395|r 621 YAAAVRLSLSPKITFSTQTLINP-KDWSTRRT--DTTIDYTMG---SYE--ANIS--YTHIPAYPLYA-----YDAR--- 682 (762) Q Consensus 621 ~v~~~~~~~~~~~~l~~~~~~d~-~~~~~~r~--~~~~~~~~~---~~~--~~~~--y~~~~~~~~~~-----~~~~--- 682 (762) +-+++.+.+.++|.+.....+.. .+.++... .+.+.+... .++ +.++ +...+...... ..+. T Consensus 26 ~g~~~gy~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (156) T 2jmm_A 26 AGAFGGYQVNPYVGFEMGYDWLGRMPRKAQGVQLTAKLGYPKLGTDDLDIYTRLGGMVWRADTSDKDGNGYISAAEASVS 105 (156) T ss_dssp EEEEEEEECSSSEEEEEEEEEECSSSSCEEEEEEEEEEEECTTCTTTCEEEEEEEEEEESSBCCCCCSSSCCCCCBCCCC T ss_pred EEEEEEEEECCCEEEEEEEEECCCCCEEEECCEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCC T ss_conf 78999887078789999788346664154232154678999703685429898314699834432036774333667628 Q ss_pred EEEEEEEEEECCCCEEEEEEEEECCC-CC--CC--EEEEEEEEE Q ss_conf 58998999972565699999995165-45--41--225656996 Q gi|254780395|r 683 KTIQSRIKFKINDVLSADASLKWNMR-AE--LP--SHSIGLAYQ 721 (762) Q Consensus 683 ~~~~~~~~~~l~~~w~~~~~~~ydl~-~~--~~--~~~~Gl~Y~ 721 (762) -.+.++..++|+++|.+...++|... .+ .. ...+|+.|. T Consensus 106 ~~~g~G~~y~l~~~~~l~~e~~~~~~~~d~~~~~~~~~~Gl~Y~ 149 (156) T 2jmm_A 106 PVFAGGVEYVIRRRITPEIATRLEYQWTNNASDNGMLSLGVSYR 149 (156) T ss_dssp EEEEEEEEEECSSSCSSSEEEEEEEEEESSSSCEEEEEEEEEEE T ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEE T ss_conf 77998999986426473437999999826888777799989999 No 8 >>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:) Probab=53.04 E-value=9.7 Score=14.82 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=17.1 Q ss_pred EEEEEEEEECCCCEEEEEEEEECC Q ss_conf 899899997256569999999516 Q gi|254780395|r 684 TIQSRIKFKINDVLSADASLKWNM 707 (762) Q Consensus 684 ~~~~~~~~~l~~~w~~~~~~~ydl 707 (762) ++.+++.+.++++|.+.+.++|-- T Consensus 109 ~~g~G~~y~i~~~~~~~~~y~y~~ 132 (155) T 1p4t_A 109 GVLTGVSYAVTPNVDLDAGYRYNY 132 (155) T ss_dssp EEEEEEEEEEETTEEEEEEEEEEE T ss_pred EEEEEEEEEECCCEEEEEEEEEEE T ss_conf 473179999458999999999997 No 9 >>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Probab=52.50 E-value=9.9 Score=14.76 Aligned_cols=25 Identities=8% Similarity=0.383 Sum_probs=20.2 Q ss_pred EEEEEEEEECCCCEEEEEEEEECCC Q ss_conf 8998999972565699999995165 Q gi|254780395|r 684 TIQSRIKFKINDVLSADASLKWNMR 708 (762) Q Consensus 684 ~~~~~~~~~l~~~w~~~~~~~ydl~ 708 (762) .+.+++.|+|+++|.+...++|-.. T Consensus 122 ~~g~G~~y~l~~~~~i~~e~~~~~~ 146 (171) T 1qjp_A 122 VFAGGVEYAITPEIATRLEYQWTNN 146 (171) T ss_dssp EEEEEEEEEEETTEEEEEEEEEEC- T ss_pred EEEEEEEEEECCCEEEEEEEEEEEC T ss_conf 8882799993599799999999972 No 10 >>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa} (X:) Probab=45.91 E-value=13 Score=14.10 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=56.8 Q ss_pred CEEEEEEEEEEEEC-CCCEEEEEEEEECCCCCCC-------CCCEEEEEEEEEEECCCC--EEEEEEEEECCCCCC---- Q ss_conf 60668899999964-7408999998722675446-------663258998999972565--699999995165454---- Q gi|254780395|r 646 WSTRRTDTTIDYTM-GSYEANISYTHIPAYPLYA-------YDARKTIQSRIKFKINDV--LSADASLKWNMRAEL---- 711 (762) Q Consensus 646 ~~~~r~~~~~~~~~-~~~~~~~~y~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~--w~~~~~~~ydl~~~~---- 711 (762) ......++.+.|++ +.+.+.++|.|........ ......+.+.+.|++.+. |.+.+.+.+-...+. T Consensus 334 ~~~~g~el~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~n~~~~~~~~~~ 413 (451) T 3dwo_X 334 RNTWTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQSMPELSIDAAYSRQFVKEVPLKT 413 (451) T ss_dssp CCEEEEEEEEEEESSSSEEEEEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEECSSSSSEEEEEEEEEEEECCEEECC T ss_pred CCCEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCC T ss_conf 31125888899994897899999996667878543153100578779998899997898628999999999737631124 Q ss_pred ------CEEEEEEEEECCEEEEEEEEEECCCC Q ss_conf ------12256569964669999999971477 Q gi|254780395|r 712 ------PSHSIGLAYQNDCATVKIIYKNESPN 737 (762) Q Consensus 712 ------~~~~~Gl~Y~~~Cw~~~l~y~r~~~~ 737 (762) ....+.+.|...-|.+.+....-.+. T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~v~n~FD~ 445 (451) T 3dwo_X 414 VNQDRLGGGRLDGRATSKGQVFSLSATYDFHH 445 (451) T ss_dssp BCCGGGTSCEEEEEEEEEEEEEEEEEEECCC- T ss_pred CCCCCCCCCCEEEEEEEEEEEEEEEEEEEECC T ss_conf 56565667611368998999999999989675 No 11 >>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:117-159) Probab=44.34 E-value=10 Score=14.62 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=24.4 Q ss_pred EEEEEEEEECCCCEEEEECCEEEECCEEE Q ss_conf 99669999677777999442899827068 Q gi|254780395|r 180 VKSKRAILNRKTHTIRLEKPYLEIFGNSI 208 (762) Q Consensus 180 i~a~~i~~d~~~~~~~~~~a~l~i~~vPv 208 (762) |+-..+++++++..|.+++--++++|-|. T Consensus 5 I~i~dlvI~pdEEkI~yk~~eielKGKpF 33 (43) T 2hqr_A 5 IEIGDLTISPDEEKIIYKGREVEVKGKPF 33 (43) T ss_dssp EEETTEEEETTTTEEEETTEEECCCSTTT T ss_pred CCCCCCCCCCCCEEEEECCEECCCCCHHH T ss_conf 22222125675339999999711341257 No 12 >>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:) Probab=42.36 E-value=14 Score=13.74 Aligned_cols=22 Identities=5% Similarity=0.377 Sum_probs=10.5 Q ss_pred EEEEEEEECCCCEEEEEEEEEC Q ss_conf 9989999725656999999951 Q gi|254780395|r 685 IQSRIKFKINDVLSADASLKWN 706 (762) Q Consensus 685 ~~~~~~~~l~~~w~~~~~~~yd 706 (762) +.+++.|.|+++|.+.+.++|- T Consensus 145 ~g~G~~y~l~~~~~l~~~~~y~ 166 (216) T 2k0l_A 145 FAGGVEWAVTRDIATRLEYQWV 166 (216) T ss_dssp EEEEEEEECSSSCEEEEEESSC T ss_pred ECCEEEEEECCCEEEEEEEEEE T ss_conf 5123799836997999999999 No 13 >>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A* (A:) Probab=42.36 E-value=14 Score=13.74 Aligned_cols=64 Identities=3% Similarity=0.014 Sum_probs=40.0 Q ss_pred CCCCEEEEEEEEEEEECC-CCEEEEEEEEECCCCCCC-------CCCEEEEEEEEEEECCCCEEEEEEEEEC Q ss_conf 676606688999999647-408999998722675446-------6632589989999725656999999951 Q gi|254780395|r 643 PKDWSTRRTDTTIDYTMG-SYEANISYTHIPAYPLYA-------YDARKTIQSRIKFKINDVLSADASLKWN 706 (762) Q Consensus 643 ~~~~~~~r~~~~~~~~~~-~~~~~~~y~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~w~~~~~~~yd 706 (762) .......-.|+.+.+++. .+.+.++|.|.+...... ......+.+.+.|.+.+.|.+...++|- T Consensus 328 ~g~~~~~G~E~~~~~~~~~~~~~~~~~ty~~~~~~~~~~g~~l~~~p~~~~~~~~~y~~~~~~~~~~~~~y~ 399 (439) T 3bs0_A 328 HRYQDITVASIGTAYKYNNDLTLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFG 399 (439) T ss_dssp CCCCCEEEEEEEEEEECSSSEEEEEEEEECC------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEEEE T ss_pred CCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEE T ss_conf 355650599961269968978999979974678784310433457688899987999808985999999997 No 14 >>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} (A:) Probab=41.32 E-value=15 Score=13.64 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=49.3 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCC-CCCCEEEEEEEEE Q ss_conf 6688999999647408999998722675446663258998999972565699999995165-4541225656996 Q gi|254780395|r 648 TRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMR-AELPSHSIGLAYQ 721 (762) Q Consensus 648 ~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~-~~~~~~~~Gl~Y~ 721 (762) ....++.+.|...+..+...|....... .....++.++..+.++++..+.+.+.+... ++-....+|+.|. T Consensus 229 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~Y~lsk~~~~y~~~~~~~~~~~~~~~~vG~r~~ 300 (301) T 2por_A 229 HKAYGLSVDSTFGATTVGGYVQVLDIDT---IDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFK 300 (301) T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT---TEEEEEEEEEEEEEEETTEEEEEEEEEECSSSCCCEEEEEEEEE T ss_pred EEEEEEEEEEECCCEEEEEEEEEECCCC---CCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEE T ss_conf 1457888999816568999999852688---88626999999998899979999999996689973799986998 No 15 >>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} (A:) Probab=38.43 E-value=16 Score=13.34 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=31.8 Q ss_pred EEEEEEEEECCCCEEEEEEEEEC-CCCCC---------------CEEEEEEEEECCEEEEEEEEE Q ss_conf 89989999725656999999951-65454---------------122565699646699999999 Q gi|254780395|r 684 TIQSRIKFKINDVLSADASLKWN-MRAEL---------------PSHSIGLAYQNDCATVKIIYK 732 (762) Q Consensus 684 ~~~~~~~~~l~~~w~~~~~~~yd-l~~~~---------------~~~~~Gl~Y~~~Cw~~~l~y~ 732 (762) ++.+.+.|.++++|++....+|. +.... .....|+...++-.+++|.|+ T Consensus 232 ~l~~~~~Y~vt~~~si~v~g~y~~~~~~~g~t~~~~~~~g~~~~~~~~ag~~~~~~~~s~Gl~y~ 296 (297) T 1i78_A 232 SVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYT 296 (297) T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEE T ss_pred EEEECCCEEECCCCEEEEEEHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEC T ss_conf 89960656876884499840123200367872203167983201347776322241662131222 No 16 >>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein interaction, mRNA decapping, L-A virus, QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus l-a} (A:117-171,A:263-284,A:435-475) Probab=37.22 E-value=10 Score=14.66 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.1 Q ss_pred CEEEECCEEEEECCCEECC Q ss_conf 2899827068632540012 Q gi|254780395|r 199 PYLEIFGNSIFYFPLIEIP 217 (762) Q Consensus 199 a~l~i~~vPv~y~Py~~~P 217 (762) -.+.+-||||.-.||+.|| T Consensus 100 dhlvvvgvpvacspymifp 118 (118) T 1m1c_A 100 DHLVVVGVPVACSPYMIFP 118 (118) T ss_dssp TEEEEESCCCCSCTTTTTT T ss_pred CCEEEECCCCCCCCCEEEE T ss_conf 7436756765798643431 No 17 >>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:) Probab=36.41 E-value=17 Score=13.14 Aligned_cols=83 Identities=8% Similarity=-0.127 Sum_probs=38.6 Q ss_pred EEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCC-CCCCCCEEEEEEEEEEEEEEECCEECCCCCEEEEEE Q ss_conf 6677756776432167179998889987788751256666665-445652023689898999983102136763258987 Q gi|254780395|r 441 RLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLSSDT-ISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEG 519 (762) Q Consensus 441 R~~~~~~~~~~~~~~~G~~~tp~~~lr~~~Y~~~~~~~~~~~~-~~~~~~~~~r~~~~~~l~~~~p~~~~~~~~~h~LeP 519 (762) -+.+..+..+++....++.++|.++++......+......... ..............+|+.+++++... .-.+.| T Consensus 125 ~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~G~~~~~~~~~~----~~~~~~ 200 (285) T 2qom_A 125 SWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMKDKDYNPLIGRTGVDVGKSFSGK----DWKVTA 200 (285) T ss_dssp EEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCCEEEEEEEEEEEEEEEEEEEEECS----SEEEEE T ss_pred EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCEEEEEEEEEEEEEEEEECC----CEEEEE T ss_conf 1887467216798036717867899999999647732357743313304640068887543530113068----807999 Q ss_pred EEEEEEEC Q ss_conf 77899943 Q gi|254780395|r 520 IAQVYAAT 527 (762) Q Consensus 520 ~~q~~~~~ 527 (762) .+.+-+.. T Consensus 201 ~~~~~~~~ 208 (285) T 2qom_A 201 RAGLGYQF 208 (285) T ss_dssp EEEEEEEE T ss_pred EEEEEEEE T ss_conf 99999997 No 18 >>2zjt_A DNA gyrase subunit B; GYRB-CTD, toprim, tail, DNA topoisomerase II, G- segment, T-segment, ATP-binding, nucleotide-binding; HET: DNA; 2.80A {Mycobacterium tuberculosis} (A:126-180) Probab=22.10 E-value=30 Score=11.51 Aligned_cols=10 Identities=10% Similarity=0.524 Sum_probs=4.1 Q ss_pred EECCCCCCCC Q ss_conf 7024455876 Q gi|254780395|r 749 LRTIGDFNPI 758 (762) Q Consensus 749 Lk~LG~~~~~ 758 (762) +||||+-||- T Consensus 44 yKGLGEMnp~ 53 (55) T 2zjt_A 44 YKGLGEMDAK 53 (55) T ss_dssp CCSSSSSCTT T ss_pred HHHHHCCCHH T ss_conf 5303018999 No 19 >>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A (A:) Probab=21.87 E-value=31 Score=11.48 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=34.6 Q ss_pred EEEEEEEEEC-CCCEEEEEEEEECCCCCCC-------CCCEEEEEEEEEEECCCCEEEEEEEEECCCCC Q ss_conf 8899999964-7408999998722675446-------66325899899997256569999999516545 Q gi|254780395|r 650 RTDTTIDYTM-GSYEANISYTHIPAYPLYA-------YDARKTIQSRIKFKINDVLSADASLKWNMRAE 710 (762) Q Consensus 650 r~~~~~~~~~-~~~~~~~~y~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~ 710 (762) ...+.+.|.. +.+.+.+++.|........ .+....+++++.|+++++|.+....+.=+.++ T Consensus 326 ~~~~~~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~dl~~~y~~~~~~~l~~~v~NL~d~~ 394 (427) T 3dwn_A 326 RIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQS 394 (427) T ss_dssp EEEEEEEECCSSSEEEEEEEEEECCCCCGGGCCTTSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEECC T ss_pred EEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCC T ss_conf 999999999699899999999765787766524334578988999879798389869999999997574 No 20 >>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase family, acarbose; HET: ACR; 1.90A {Thermus aquaticus} (A:1-61,A:208-500) Probab=20.45 E-value=24 Score=12.23 Aligned_cols=20 Identities=25% Similarity=0.120 Sum_probs=16.6 Q ss_pred CCCCCCCCEEEECCCCCCCC Q ss_conf 45454100056413333430 Q gi|254780395|r 222 VRKTGFLTPLFSSGEKQRFG 241 (762) Q Consensus 222 ~R~sGfL~P~~~~s~~~G~~ 241 (762) +|++|.|.|-++.-+..|.+ T Consensus 4 ~R~aGvll~i~SLp~~~GiG 23 (354) T 1esw_A 4 PRAFGLLLHPTSLPGPYGVG 23 (354) T ss_dssp CSEEEEECCGGGSCCSSSSC T ss_pred CCCCEEEECCCCCCCCCCCC T ss_conf 77701565754379999887 Done!