Query gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 762
No_of_seqs 218 out of 1458
Neff 8.8
Searched_HMMs 23785
Date Mon May 30 10:42:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780395.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r19_A Protein YHBN; beta-jell 99.2 6.9E-10 2.9E-14 81.6 14.3 86 46-131 4-99 (159)
2 3my2_A Lipopolysaccharide expo 98.3 5.1E-05 2.1E-09 49.1 14.5 113 51-165 43-166 (175)
3 2r19_A Protein YHBN; beta-jell 98.2 1.3E-05 5.4E-10 53.1 10.0 109 79-199 8-129 (159)
4 3my2_A Lipopolysaccharide expo 97.5 0.0039 1.6E-07 36.5 17.9 78 51-130 77-159 (175)
5 3emn_X Voltage-dependent anion 94.4 0.18 7.6E-06 25.4 16.6 82 629-721 157-238 (295)
6 3bs0_A TODX; beta barrel, oute 88.6 0.82 3.4E-05 21.0 18.3 26 682-707 375-400 (439)
7 3dwo_X Probable outer membrane 81.4 1.7 7.3E-05 18.8 18.0 23 684-706 338-360 (451)
8 2por_A Porin; HET: C8E; 1.80A 73.1 3 0.00012 17.3 11.8 71 648-721 229-300 (301)
9 3dwn_A Long-chain fatty acid t 58.5 5.6 0.00024 15.4 25.3 82 650-731 326-417 (427)
10 1qjp_A Outer membrane protein 56.9 6 0.00025 15.2 17.2 23 685-707 123-145 (171)
11 3aeh_A Hemoglobin-binding prot 52.0 7.1 0.0003 14.7 17.5 23 685-707 266-288 (308)
12 2wjr_A Probable N-acetylneuram 51.9 7.1 0.0003 14.7 21.9 76 646-721 124-213 (214)
13 2f1v_A Outer membrane protein 50.4 7.5 0.00032 14.5 7.0 23 684-706 135-157 (197)
14 1x1n_A 4-alpha-glucanotransfer 43.3 3.6 0.00015 16.7 -0.3 36 205-240 8-43 (524)
15 2jen_A Xyloglucanase, endo-bet 40.4 5.1 0.00021 15.7 0.1 20 6-25 4-23 (261)
16 2qom_A Serine protease ESPP; o 39.0 11 0.00047 13.4 17.7 83 441-527 125-208 (285)
17 3guu_A Lipase A; protein struc 36.0 12 0.00052 13.1 5.0 17 1-17 1-17 (462)
18 3prn_A Porin; integral membran 34.6 13 0.00055 12.9 15.4 67 649-721 222-288 (289)
19 1p4t_A Outer membrane protein 30.9 15 0.00063 12.6 12.9 24 683-706 108-131 (155)
20 1m1c_A GAG protein, major coat 30.2 15 0.00065 12.5 1.9 11 544-554 478-488 (680)
21 2e84_A High-molecular-weight c 22.4 19 0.0008 11.9 0.5 25 1-25 1-25 (556)
22 2cw3_A Pmsod2, iron superoxide 20.2 19 0.0008 11.8 0.2 43 214-256 54-97 (280)
23 1i78_A Protease VII; integral 20.1 24 0.00099 11.2 20.3 48 685-732 233-296 (297)
No 1
>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A
Probab=99.20 E-value=6.9e-10 Score=81.64 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEECCCC-----EEEEECCEEE-E----CCCCCEEEE
Q ss_conf 76666079992079997668979999879999899699951899986378-----7999734899-8----389878997
Q gi|254780395|r 46 TNRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNH-----RIIASGNIKL-I----EPDKRQIHA 115 (762)
Q Consensus 46 ~~~~~~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~~~~-----~~~a~G~v~~-~----~~~g~~~~~ 115 (762)
...+.||.|+||.|+||...+.++++|||+|.++++.|+||++++....+ .+.+.|++.. . +.+.....|
T Consensus 4 ~D~~qpi~I~Ad~l~~d~~~~~~~~~GnV~i~~g~~~i~ad~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a 83 (159)
T 2r19_A 4 GDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHA 83 (159)
T ss_dssp GGGGSCEEEEESEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEEEC
T ss_pred CCCCCCEEEEECEEEEECCCCEEEEECCEEEEECCEEEEEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCEEEEEE
T ss_conf 67789989997779966089999998148998487699997799995377652146762143168999715884399999
Q ss_pred EEEEEECCCCEEEEEE
Q ss_conf 0699943025599984
Q gi|254780395|r 116 EYLDITDDFTNGIIKN 131 (762)
Q Consensus 116 ~~~~~~~~~~~g~~~~ 131 (762)
+++.|+.+.+...+.+
T Consensus 84 ~~~~Y~~~~~~~~l~G 99 (159)
T 2r19_A 84 SQMHYELAKDFVVLTG 99 (159)
T ss_dssp SEEEEEGGGTEEEEEE
T ss_pred EEEEEECCCCEEEEEC
T ss_conf 8999977799999964
No 2
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli}
Probab=98.29 E-value=5.1e-05 Score=49.09 Aligned_cols=113 Identities=8% Similarity=0.023 Sum_probs=51.1
Q ss_pred EEEEEEEEEEEECCCCEEEEEE-EEEEEECC----EEEEEEEEEEECCCCEEEEECCEEEECCCC----CEEEEEEEEEE
Q ss_conf 0799920799976689799998-79999899----699951899986378799973489983898----78997069994
Q gi|254780395|r 51 ELDISSDEIVLNSEGSTTTAVG-NVKIEYKG----YHLSARDITFNHKNHRIIASGNIKLIEPDK----RQIHAEYLDIT 121 (762)
Q Consensus 51 ~~~~~ad~~~~~~~~~~~~a~G-~v~i~~~~----~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g----~~~~~~~~~~~ 121 (762)
...|.|+++.+....+.+.+.. .+.++.++ ..|+||+.+++.. +.+.+.|||++....+ ..+.++.+.++
T Consensus 43 ~~~l~A~~~~~~~~~~~~~l~~P~~~~~~~~~~~~w~itA~~g~~~~~-~~l~L~gnV~i~~~~~~~~~~~l~T~~L~~~ 121 (175)
T 3my2_A 43 SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTND-RMLYLYGHVEVNALVPDSQLRRITTDNAQIN 121 (175)
T ss_dssp CEEEECSSEEEETTTTEEEEESCEEEEECTTCCEEEEEECSEEEECTT-SEEEEEEEEEEEECSSSCSEEEEEEEEEEEE
T ss_pred EEEEECCHHEECCCCCCEEEECCEEEEECCCCCCEEEEEECEEEECCC-CEEEEECEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 999991631421488964882559999748998229999385898799-6899964099996378887469998159999
Q ss_pred CCCCEEEEEEEEEEEECCCEEEEEEEEEE--CCCEEEEEEEEEEEC
Q ss_conf 30255999847999706750210246872--397599998799731
Q gi|254780395|r 122 DDFTNGIIKNLTIKIPADETYLTASSAQI--IGQRTIFDKGTYTAC 165 (762)
Q Consensus 122 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~T~C 165 (762)
.+.+...-...... ......+.|...+. ..+.+.|...+=+.-
T Consensus 122 ~~~~~~~td~~V~i-~~~~~~~~g~gm~~~l~~~~~~l~~~Vk~~y 166 (175)
T 3my2_A 122 LVTQDVTSEDLVTL-YGTTFNSSGLKMRGNLRSKNAELIEKVRTSY 166 (175)
T ss_dssp TTTCEEEEEEEEEE-EESSCEEEEEEEEEETTTTEEEEEEEEEETT
T ss_pred ECCCEEEECCCEEE-ECCCCEEEEEEEEEECCCCEEEEECCEEEEE
T ss_conf 15679994884999-9299699977899996389999940628999
No 3
>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A
Probab=98.20 E-value=1.3e-05 Score=53.10 Aligned_cols=109 Identities=9% Similarity=0.071 Sum_probs=72.0
Q ss_pred CCEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEEECCCCEEEEEEE------EEE--E--ECCCEEEEEEEE
Q ss_conf 996999518999863787999734899838987899706999430255999847------999--7--067502102468
Q gi|254780395|r 79 KGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITDDFTNGIIKNL------TIK--I--PADETYLTASSA 148 (762)
Q Consensus 79 ~~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~~~~~~~g~~~~~------~~~--~--~~~~~~~~~~~~ 148 (762)
+...|.||++.||.+++.+.++|||.+.+++ ..+.|+++.+..+.+....... ... . ......+.++.+
T Consensus 8 qpi~I~Ad~l~~d~~~~~~~~~GnV~i~~g~-~~i~ad~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~ 86 (159)
T 2r19_A 8 QPIHIESDQQSLDMQGNVVTFTGNVIVTQGT-IKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQM 86 (159)
T ss_dssp SCEEEEESEEEEETTTTEEEEEEEEEEEETT-EEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEEECSEE
T ss_pred CCEEEEECEEEEECCCCEEEEECCEEEEECC-EEEEEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEEE
T ss_conf 9989997779966089999998148998487-699997799995377652146762143168999715884399999899
Q ss_pred EEC--CCEEEE-EEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECC
Q ss_conf 723--975999-987997313766577888508999669999677777999442
Q gi|254780395|r 149 QII--GQRTIF-DKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKP 199 (762)
Q Consensus 149 ~~~--~~~~~~-~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~~~a 199 (762)
.-. .+..+| -++.++-.. =.|+|.+|++|.+++.+.+...
T Consensus 87 ~Y~~~~~~~~l~Gna~l~q~~-----------~~i~g~~i~y~~~~~~~~~~g~ 129 (159)
T 2r19_A 87 HYELAKDFVVLTGNAYLQQVD-----------SNIKGDKITYLVKEQKMQAFSD 129 (159)
T ss_dssp EEEGGGTEEEEEEEEEEEETT-----------EEEEEEEEEEETTTTEEEEECS
T ss_pred EEECCCCEEEEECCEEEEECC-----------CEEEEEEEEEECCCCEEEEECC
T ss_conf 997779999996419999799-----------9999759999906899999658
No 4
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli}
Probab=97.53 E-value=0.0039 Score=36.51 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=67.7
Q ss_pred EEEEEEEEEEEECCCCEEEEEEEEEEEECC-----EEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEEECCCC
Q ss_conf 079992079997668979999879999899-----699951899986378799973489983898789970699943025
Q gi|254780395|r 51 ELDISSDEIVLNSEGSTTTAVGNVKIEYKG-----YHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITDDFT 125 (762)
Q Consensus 51 ~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~-----~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~~~~~~ 125 (762)
.+.++||.-.++.+ +.+.+.|||+|.... .+|.++.+.|+.+++.+...+.|.+..+ +..+.|..+.++++.+
T Consensus 77 ~w~itA~~g~~~~~-~~l~L~gnV~i~~~~~~~~~~~l~T~~L~~~~~~~~~~td~~V~i~~~-~~~~~g~gm~~~l~~~ 154 (175)
T 3my2_A 77 TWSVKADKAKLTND-RMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGT-TFNSSGLKMRGNLRSK 154 (175)
T ss_dssp EEEEECSEEEECTT-SEEEEEEEEEEEECSSSCSEEEEEEEEEEEETTTCEEEEEEEEEEEES-SCEEEEEEEEEETTTT
T ss_pred EEEEEECEEEECCC-CEEEEECEEEEEECCCCCCCEEEEEEEEEEEECCCEEEECCCEEEECC-CCEEEEEEEEEECCCC
T ss_conf 29999385898799-689996409999637888746999815999915679994884999929-9699977899996389
Q ss_pred EEEEE
Q ss_conf 59998
Q gi|254780395|r 126 NGIIK 130 (762)
Q Consensus 126 ~g~~~ 130 (762)
.-.+.
T Consensus 155 ~~~l~ 159 (175)
T 3my2_A 155 NAELI 159 (175)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99994
No 5
>3emn_X Voltage-dependent anion-selective channel protein 1; VDAC1, eukaryotic membrane protein, beta barrel, acetylation, alternative splicing, apoptosis; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=94.41 E-value=0.18 Score=25.37 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCC
Q ss_conf 36777999999861676606688999999647408999998722675446663258998999972565699999995165
Q gi|254780395|r 629 LSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMR 708 (762)
Q Consensus 629 ~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~ 708 (762)
..++|.+.....||....++....+.+.|+.+.+.+++... . ...+.++.-.+++++|.+.....++..
T Consensus 157 ~~~~~~lG~e~~y~~~~~~~~~~~~~~~y~~~~~~~s~~~~---~--------~~~~~~S~~~kv~~~l~vg~e~~~~~~ 225 (295)
T 3emn_X 157 GYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVN---D--------GTEFGGSIYQKVNKKLETAVNLAWTAG 225 (295)
T ss_dssp EETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEE---T--------TTEEEEEEEEECSSSEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEEEEC---C--------CCEEEEEEEEECCCCEEEEEEEEEECC
T ss_conf 22878999998852688873038999898379879999988---9--------882899999993860578889997026
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 4541225656996
Q gi|254780395|r 709 AELPSHSIGLAYQ 721 (762)
Q Consensus 709 ~~~~~~~~Gl~Y~ 721 (762)
.....-.+|.+|.
T Consensus 226 ~~~~~~~iG~qy~ 238 (295)
T 3emn_X 226 NSNTRFGIAAKYQ 238 (295)
T ss_dssp EEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEE
T ss_conf 8973899999999
No 6
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=88.57 E-value=0.82 Score=20.99 Aligned_cols=26 Identities=0% Similarity=0.210 Sum_probs=14.3
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEECC
Q ss_conf 25899899997256569999999516
Q gi|254780395|r 682 RKTIQSRIKFKINDVLSADASLKWNM 707 (762)
Q Consensus 682 ~~~~~~~~~~~l~~~w~~~~~~~ydl 707 (762)
+..+++++.|+++++|.+...+.|-.
T Consensus 375 ~~~~s~G~~~~~~~~~~idla~~y~~ 400 (439)
T 3bs0_A 375 KRHVTFGGEYDFDKDSRINLAISFGL 400 (439)
T ss_dssp SEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCEEEEEEEEEEC
T ss_conf 78999889998289829999999982
No 7
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=81.41 E-value=1.7 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=9.5
Q ss_pred EEEEEEEEECCCCEEEEEEEEEC
Q ss_conf 89989999725656999999951
Q gi|254780395|r 684 TIQSRIKFKINDVLSADASLKWN 706 (762)
Q Consensus 684 ~~~~~~~~~l~~~w~~~~~~~yd 706 (762)
.+.+++.|++++.|.+.+++.|+
T Consensus 338 ~~~~G~ey~~~~~l~lRaG~~y~ 360 (451)
T 3dwo_X 338 TLAVGGDYKVTDQWTMRAGVAYD 360 (451)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEEEEC
T ss_conf 48877899938988999999977
No 8
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=73.07 E-value=3 Score=17.26 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=50.5
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECC-CCCCCEEEEEEEEE
Q ss_conf 668899999964740899999872267544666325899899997256569999999516-54541225656996
Q gi|254780395|r 648 TRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNM-RAELPSHSIGLAYQ 721 (762)
Q Consensus 648 ~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl-~~~~~~~~~Gl~Y~ 721 (762)
.....+.+.|..+++.+.+.|...+... .++..++.+++.|+|+++..+.+.+.+.- .++.....+|+.|.
T Consensus 229 ~~~~~l~~~y~~g~~~~~~~y~~~~~~~---~~~~~~~~lG~~Y~lsk~~~~~~~y~~~~~d~~~~~~~~G~~~~ 300 (301)
T 2por_A 229 HKAYGLSVDSTFGATTVGGYVQVLDIDT---IDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFK 300 (301)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT---TEEEEEEEEEEEEEEETTEEEEEEEEEECSSSCCCEEEEEEEEE
T ss_pred EEEEEEEEEEECCCEEEEEEEEEECCCC---CCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 0048999999818778999999963688---88538999999998899989999999981689964799987998
No 9
>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A
Probab=58.51 E-value=5.6 Score=15.40 Aligned_cols=82 Identities=7% Similarity=0.039 Sum_probs=44.1
Q ss_pred EEEEEEEEEC-CCCEEEEEEEEECCCC-------CCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCC--CEEEEEEE
Q ss_conf 8899999964-7408999998722675-------446663258998999972565699999995165454--12256569
Q gi|254780395|r 650 RTDTTIDYTM-GSYEANISYTHIPAYP-------LYAYDARKTIQSRIKFKINDVLSADASLKWNMRAEL--PSHSIGLA 719 (762)
Q Consensus 650 r~~~~~~~~~-~~~~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~--~~~~~Gl~ 719 (762)
...++++|+. +.+.+.++|.|...-. ..-..++..+.+++.++++++|.+...+.|-...+. ....+...
T Consensus 326 ~~~~G~ey~~~~~l~lRaG~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~~y~y~~~~~~~~~~~~~~~~ 405 (427)
T 3dwn_A 326 RIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFE 405 (427)
T ss_dssp EEEEEEEECCSSSEEEEEEEEEECCCCCGGGCCTTSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEECCEEEEETTEEEE
T ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCEECCCCEEEE
T ss_conf 99999999928988999999976678786652432456798899988989818980999999999857520506741578
Q ss_pred EECCEEEEEEEE
Q ss_conf 964669999999
Q gi|254780395|r 720 YQNDCATVKIIY 731 (762)
Q Consensus 720 Y~~~Cw~~~l~y 731 (762)
++..-|.+.+++
T Consensus 406 ~~~~~~~~~~~~ 417 (427)
T 3dwn_A 406 SEGKAWLFGTNF 417 (427)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEE
T ss_conf 876899999999
No 10
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=56.94 E-value=6 Score=15.23 Aligned_cols=23 Identities=9% Similarity=0.411 Sum_probs=15.4
Q ss_pred EEEEEEEECCCCEEEEEEEEECC
Q ss_conf 99899997256569999999516
Q gi|254780395|r 685 IQSRIKFKINDVLSADASLKWNM 707 (762)
Q Consensus 685 ~~~~~~~~l~~~w~~~~~~~ydl 707 (762)
+.+++.|.++++|.+.+.++|..
T Consensus 123 ~g~G~~y~~~~~~~l~~~y~y~~ 145 (171)
T 1qjp_A 123 FAGGVEYAITPEIATRLEYQWTN 145 (171)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEECCCEEEEEEEEEEE
T ss_conf 98169999269989999999997
No 11
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=52.03 E-value=7.1 Score=14.72 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=11.4
Q ss_pred EEEEEEEECCCCEEEEEEEEECC
Q ss_conf 99899997256569999999516
Q gi|254780395|r 685 IQSRIKFKINDVLSADASLKWNM 707 (762)
Q Consensus 685 ~~~~~~~~l~~~w~~~~~~~ydl 707 (762)
+.+++.++++++|.+.+.+.+.+
T Consensus 266 ~~lG~~~~~~~~~~l~~~~~~~~ 288 (308)
T 3aeh_A 266 YGVGLNARFGDNTRLGLEVERSA 288 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEE
T ss_pred EEEEEEEEECCCEEEEEEEEEEE
T ss_conf 99999999889999999999998
No 12
>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=51.89 E-value=7.1 Score=14.70 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=41.6
Q ss_pred CEEEEEEEEEEEECC-CCEEEEEEEEECCC-CC-CC--CCCEEEEEEEEEEECCCCEEEEEEEEECCC----CC-----C
Q ss_conf 606688999999647-40899999872267-54-46--663258998999972565699999995165----45-----4
Q gi|254780395|r 646 WSTRRTDTTIDYTMG-SYEANISYTHIPAY-PL-YA--YDARKTIQSRIKFKINDVLSADASLKWNMR----AE-----L 711 (762)
Q Consensus 646 ~~~~r~~~~~~~~~~-~~~~~~~y~~~~~~-~~-~~--~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~----~~-----~ 711 (762)
....|.+..+.|+.. .+.+.....|.... .. .. .+...+.++.+.|++.++|.=...+.+--. ++ .
T Consensus 124 ~~~~r~d~~i~Y~~~~~~~~~y~~~y~~~~~~~~~~n~k~~~~ehn~~~~Yk~~~~w~PYvE~g~v~~~~~~d~~~~~~q 203 (214)
T 2wjr_A 124 DNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSE 203 (214)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEESSSCCCTTSSSEEEEEEEEEEECSSSSEEEEEEEEECCSCEEETTEEEECC
T ss_pred CCEEEEEEEEEEEECCCEEEEEEEEEEECCCCEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 75289989998886145589988123405672660388774479999999997998521699998505501088744413
Q ss_pred CEEEEEEEEE
Q ss_conf 1225656996
Q gi|254780395|r 712 PSHSIGLAYQ 721 (762)
Q Consensus 712 ~~~~~Gl~Y~ 721 (762)
.+.++|++|.
T Consensus 204 ~r~RVGv~Y~ 213 (214)
T 2wjr_A 204 NSYRIGVSFK 213 (214)
T ss_dssp EEEEEEEEEC
T ss_pred CEEEEEEEEE
T ss_conf 2799998976
No 13
>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A
Probab=50.40 E-value=7.5 Score=14.55 Aligned_cols=23 Identities=17% Similarity=0.136 Sum_probs=14.9
Q ss_pred EEEEEEEEECCCCEEEEEEEEEC
Q ss_conf 89989999725656999999951
Q gi|254780395|r 684 TIQSRIKFKINDVLSADASLKWN 706 (762)
Q Consensus 684 ~~~~~~~~~l~~~w~~~~~~~yd 706 (762)
.+.+++.|+|+++|++.+.++|-
T Consensus 135 ~~g~G~~Y~i~~~~sl~~eyry~ 157 (197)
T 2f1v_A 135 AGQVGVDYLINRDWLVNMSVWYM 157 (197)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEE
T ss_pred EEECCEEEEECCCEEEEEEEEEE
T ss_conf 99624899917983999999999
No 14
>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1
Probab=43.30 E-value=3.6 Score=16.72 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=23.2
Q ss_pred CEEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 706863254001245554545410005641333343
Q gi|254780395|r 205 GNSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF 240 (762)
Q Consensus 205 ~vPv~y~Py~~~P~~~~~R~sGfL~P~~~~s~~~G~ 240 (762)
.+|.-+.=++..+.+..+|++|.|+|-++.-+..|.
T Consensus 8 ~~p~~~~~~~p~~~~~~~R~~Gvll~~~SLp~~~GI 43 (524)
T 1x1n_A 8 DFPIDYADWLPKRDPNDRRRAGILLHPTSFPGPYGI 43 (524)
T ss_dssp CCCTTGGGCCCCCCGGGCCEEEEECCGGGSCCTTSS
T ss_pred CCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 789654653888787777454888467658999988
No 15
>2jen_A Xyloglucanase, endo-beta-1,4-glucanase; plant cell WALL, glycosidase, hydrolase, family 12; HET: GLC BGC DIO; 1.4A {Bacillus licheniformis} PDB: 2jem_A
Probab=40.44 E-value=5.1 Score=15.67 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 02476789999999987632
Q gi|254780395|r 6 RHLIGATTFFLAFNIITPQG 25 (762)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (762)
.|+|+...|+.|+++++.++
T Consensus 4 ~~~~~~~~~~~a~~~~~~~~ 23 (261)
T 2jen_A 4 NHLLKSILLWGAVCIIVLAG 23 (261)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 04789999999999998724
No 16
>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157}
Probab=39.02 E-value=11 Score=13.40 Aligned_cols=83 Identities=8% Similarity=-0.138 Sum_probs=42.3
Q ss_pred EEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCC-CCCCCCCCEEEEEEEEEEEEEEECCEECCCCCEEEEEE
Q ss_conf 66777567764321671799988899877887512566666-65445652023689898999983102136763258987
Q gi|254780395|r 441 RLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLSS-DTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEG 519 (762)
Q Consensus 441 R~~~~~~~~~~~~~~~G~~~tp~~~lr~~~Y~~~~~~~~~~-~~~~~~~~~~~r~~~~~~l~~~~p~~~~~~~~~h~LeP 519 (762)
.+.+..++.+++....++.++|.+++.......+....... ................+|+.+.+++... ...|.|
T Consensus 125 ~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~G~~~~~~~~~~----~~~~~~ 200 (285)
T 2qom_A 125 SWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMKDKDYNPLIGRTGVDVGKSFSGK----DWKVTA 200 (285)
T ss_dssp EEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCCEEEEEEEEEEEEEEEEEEEEECS----SEEEEE
T ss_pred CCEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEECCCCCCEEEECCCCEEEEEEEEEEEEEEEECC----CEEEEE
T ss_conf 0010016788777189807825899999998648501037432058814750268986411402689738----807999
Q ss_pred EEEEEEEC
Q ss_conf 77899943
Q gi|254780395|r 520 IAQVYAAT 527 (762)
Q Consensus 520 ~~q~~~~~ 527 (762)
.+.+.+.-
T Consensus 201 ~~~~~~~~ 208 (285)
T 2qom_A 201 RAGLGYQF 208 (285)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
T ss_conf 99999999
No 17
>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A*
Probab=35.96 E-value=12 Score=13.09 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 95331024767899999
Q gi|254780395|r 1 MRYNYRHLIGATTFFLA 17 (762)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (762)
||+..|.+..+....++
T Consensus 1 mr~~~~~~~~~~~~~~~ 17 (462)
T 3guu_A 1 MRVSLRSITSLLAAATA 17 (462)
T ss_dssp -----------------
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 91689999999999988
No 18
>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=34.59 E-value=13 Score=12.95 Aligned_cols=67 Identities=9% Similarity=0.179 Sum_probs=45.4
Q ss_pred EEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 6889999996474089999987226754466632589989999725656999999951654541225656996
Q gi|254780395|r 649 RRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQ 721 (762)
Q Consensus 649 ~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~~~~~Gl~Y~ 721 (762)
....+.+.|..++..+.+.|...... .+...+.+++.|+|++++++.+.+.++-. +.....+|+.|.
T Consensus 222 ~~~~~~~~y~~g~~~~~~~y~~~~~~-----~~~~~~~~g~~Y~l~~~~~l~a~~~~~~~-d~t~~~~Gv~~~ 288 (289)
T 3prn_A 222 DQVTLYGNYAFGATTVRAYVSDIDRA-----GADTAYGIGADYQFAEGVKVSGSVQSGFA-NETVADVGVRFD 288 (289)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECST-----TCCCEEEEEEEEEEETTEEEEEEEEECTT-CCEEEEEEEEEE
T ss_pred EEEEEEEEEEECCEEEEEEEEECCCC-----CCCCEEEEEEEEECCCCEEEEEEEEEECC-CCCCEEEEEEEE
T ss_conf 26998778983777899999860677-----66448999999976999799999999538-985360377888
No 19
>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1
Probab=30.93 E-value=15 Score=12.56 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=18.3
Q ss_pred EEEEEEEEEECCCCEEEEEEEEEC
Q ss_conf 589989999725656999999951
Q gi|254780395|r 683 KTIQSRIKFKINDVLSADASLKWN 706 (762)
Q Consensus 683 ~~~~~~~~~~l~~~w~~~~~~~yd 706 (762)
-++.+++.++++++|.+.+.++|-
T Consensus 108 ~~~g~G~~y~~~~~~~~~~ey~y~ 131 (155)
T 1p4t_A 108 LGVLTGVSYAVTPNVDLDAGYRYN 131 (155)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEECCCEEEEEEEEEE
T ss_conf 475114999717899999999998
No 20
>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein interaction, mRNA decapping, L-A virus, QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus l-a} SCOP: e.42.1.1
Probab=30.19 E-value=15 Score=12.47 Aligned_cols=11 Identities=9% Similarity=0.377 Sum_probs=4.7
Q ss_pred CCCCHHHCCCC
Q ss_conf 24702100212
Q gi|254780395|r 544 VLNSTSLFTQN 554 (762)
Q Consensus 544 ~fd~~nLF~~n 554 (762)
.|+..|.|+.|
T Consensus 478 ~Fd~~npy~g~ 488 (680)
T 1m1c_A 478 AFDTANPYCGN 488 (680)
T ss_dssp SSSSCCTTSSE
T ss_pred CCCCCCCCCCC
T ss_conf 25778865453
No 21
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Probab=22.35 E-value=19 Score=11.87 Aligned_cols=25 Identities=12% Similarity=-0.158 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9533102476789999999987632
Q gi|254780395|r 1 MRYNYRHLIGATTFFLAFNIITPQG 25 (762)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (762)
|+-.+|.|+.+++|++...++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (556)
T 2e84_A 1 MMNAKSLLRWAGALVAVAAVTVFGL 25 (556)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9873137888899999999988888
No 22
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus}
Probab=20.23 E-value=19 Score=11.85 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=30.4
Q ss_pred EECCCCCCCCCCCCCCEEEECCCCCCCCEECEE-EEECCCCCCE
Q ss_conf 001245554545410005641333343000103-4302465201
Q gi|254780395|r 214 IEIPDETVVRKTGFLTPLFSSGEKQRFGVGIPY-YLVISDNSDA 256 (762)
Q Consensus 214 ~~~P~~~~~R~sGfL~P~~~~s~~~G~~~~~Py-y~~i~~~~D~ 256 (762)
...|+...-|.-+|.+|.-+.--..|.-+.+|| |=++.|..|.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPY~ydaLEP~IS~ 97 (280)
T 2cw3_A 54 HAIPSGKGLRAKPFVPSRSGVAPSSGLRMTLPYGLEALEPVISA 97 (280)
T ss_dssp ----------------------CCSSSCCCCSSCTTTTTTTSCH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCH
T ss_conf 00686656567888787555688889715199885634001289
No 23
>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} SCOP: f.4.4.1
Probab=20.14 E-value=24 Score=11.24 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=28.8
Q ss_pred EEEEEEEECCCCEEEEEEEEECC-CCCC---------------CEEEEEEEEECCEEEEEEEEE
Q ss_conf 99899997256569999999516-5454---------------122565699646699999999
Q gi|254780395|r 685 IQSRIKFKINDVLSADASLKWNM-RAEL---------------PSHSIGLAYQNDCATVKIIYK 732 (762)
Q Consensus 685 ~~~~~~~~l~~~w~~~~~~~ydl-~~~~---------------~~~~~Gl~Y~~~Cw~~~l~y~ 732 (762)
+.+.+.+.++++++++....|.- ...+ .....|+...++-.+++|.|+
T Consensus 233 ~~~~agY~vtp~~sl~~e~~y~~~~~~kG~t~~~d~~tg~~~~~~d~aGi~n~~~tvs~GL~Y~ 296 (297)
T 1i78_A 233 VAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYT 296 (297)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9999889867987999999999998235860998468861432678646021136999988887
Done!