Query         gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 762
No_of_seqs    218 out of 1458
Neff          8.8 
Searched_HMMs 13730
Date          Wed Jun  1 04:10:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780395.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1t16a_ f.4.3.4 (A:) Long-chai  65.0     2.5 0.00018   16.2  24.8   85  648-732   324-418 (427)
  2 d2pora_ f.4.3.1 (A:) Porin {Rh  50.8     4.3 0.00031   14.6  11.8   69  650-721   231-300 (301)
  3 d1x1na1 c.1.8.1 (A:2-524) Amyl  45.7     1.8 0.00013   17.1  -0.3   35  206-240     8-42  (523)
  4 d1qjpa_ f.4.1.1 (A:) Outer mem  35.9     7.2 0.00052   13.1  17.4   23  684-706   122-144 (171)
  5 d1m1ca_ e.42.1.1 (A:) L-A viru  32.8       8 0.00059   12.8   2.3   10  544-553   478-487 (651)
  6 d1qj8a_ f.4.1.1 (A:) Outer mem  20.2      14 0.00098   11.3  15.3   37  684-720   108-146 (148)
  7 d3b7sa2 b.98.1.1 (A:1-208) Leu  17.5      15  0.0011   10.9   7.4   17   59-77     25-41  (208)
  8 d1d7ya3 d.87.1.1 (A:309-405) N  15.7      17  0.0012   10.6   0.9   16  243-260     7-22  (97)
  9 d3prna_ f.4.3.1 (A:) Porin {Rh  15.6      17  0.0013   10.6  15.6   67  649-721   222-288 (289)
 10 d1i78a_ f.4.4.1 (A:) Outer mem  14.3      19  0.0014   10.3  20.3  158  561-732   105-296 (297)

No 1  
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=65.05  E-value=2.5  Score=16.16  Aligned_cols=85  Identities=7%  Similarity=0.039  Sum_probs=52.1

Q ss_pred             EEEEEEEEEEECC-CCEEEEEEEEECCCCC-------CCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCC-E-EEEE
Q ss_conf             6688999999647-4089999987226754-------466632589989999725656999999951654541-2-2565
Q gi|254780395|r  648 TRRTDTTIDYTMG-SYEANISYTHIPAYPL-------YAYDARKTIQSRIKFKINDVLSADASLKWNMRAELP-S-HSIG  717 (762)
Q Consensus       648 ~~r~~~~~~~~~~-~~~~~~~y~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~-~-~~~G  717 (762)
                      .....++++|+.. ++.+.++|.|...-..       .-...+..+++++.++++++|.+...+.|-...+.. . ..+.
T Consensus       324 ~~~~~~G~ey~~~~~l~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~~~~~~~~~~~~  403 (427)
T d1t16a_         324 AYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQ  403 (427)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEECCEEEEETTEE
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCE
T ss_conf             48999878998356699999999746777765546434678988999889898489869999999997475310267300


Q ss_pred             EEEECCEEEEEEEEE
Q ss_conf             699646699999999
Q gi|254780395|r  718 LAYQNDCATVKIIYK  732 (762)
Q Consensus       718 l~Y~~~Cw~~~l~y~  732 (762)
                      ..++..-|.+.+.+.
T Consensus       404 ~~~~~~~~~~~~~~~  418 (427)
T d1t16a_         404 FESEGKAWLFGTNFN  418 (427)
T ss_dssp             EEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEEEE
T ss_conf             478878999999999


No 2  
>d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}
Probab=50.79  E-value=4.3  Score=14.59  Aligned_cols=69  Identities=10%  Similarity=0.035  Sum_probs=48.0

Q ss_pred             EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCC-CCCCEEEEEEEEE
Q ss_conf             88999999647408999998722675446663258998999972565699999995165-4541225656996
Q gi|254780395|r  650 RTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMR-AELPSHSIGLAYQ  721 (762)
Q Consensus       650 r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~-~~~~~~~~Gl~Y~  721 (762)
                      ...+.+.|..+++.+...|...+...   .++..++.+++.++|+++..+.+.+.+.-. ++.....+|+.|.
T Consensus       231 ~~~~~~~y~~g~~~~~~~y~~~~~~~---~~~~~~~~lG~~Y~Lsk~t~ly~~y~~~~~d~~~~~~~~G~~~~  300 (301)
T d2pora_         231 AYGLSVDSTFGATTVGGYVQVLDIDT---IDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFK  300 (301)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETT---TEEEEEEEEEEEEEEETTEEEEEEEEEECSSSCCCEEEEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEEEEECCCC---CCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             01134689713247889999841688---88636999999997899979999999983589873799964998


No 3  
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=45.72  E-value=1.8  Score=17.12  Aligned_cols=35  Identities=20%  Similarity=0.073  Sum_probs=21.9

Q ss_pred             EEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             06863254001245554545410005641333343
Q gi|254780395|r  206 NSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF  240 (762)
Q Consensus       206 vPv~y~Py~~~P~~~~~R~sGfL~P~~~~s~~~G~  240 (762)
                      .|.-|+=++..++|..+|++|.|+|-++.-+..|.
T Consensus         8 ~~~~~~~~~p~~~~~~~R~~Gvllh~~SLp~~~Gi   42 (523)
T d1x1na1           8 FPIDYADWLPKRDPNDRRRAGILLHPTSFPGPYGI   42 (523)
T ss_dssp             CCTTGGGCCCCCCGGGCCEEEEECCGGGSCCTTSS
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             89762000767677777344898667557999989


No 4  
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=35.92  E-value=7.2  Score=13.09  Aligned_cols=23  Identities=9%  Similarity=0.443  Sum_probs=14.8

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEC
Q ss_conf             89989999725656999999951
Q gi|254780395|r  684 TIQSRIKFKINDVLSADASLKWN  706 (762)
Q Consensus       684 ~~~~~~~~~l~~~w~~~~~~~yd  706 (762)
                      .+.+++.++++++|.+.+.++|-
T Consensus       122 ~~G~G~~y~i~~~~~l~~ey~~~  144 (171)
T d1qjpa_         122 VFAGGVEYAITPEIATRLEYQWT  144 (171)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCEEEEEEEEEE
T ss_conf             79827999927997999999999


No 5  
>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces cerevisiae virus L-A [TaxId: 11008]}
Probab=32.81  E-value=8  Score=12.76  Aligned_cols=10  Identities=0%  Similarity=0.288  Sum_probs=4.5

Q ss_pred             CCCCHHHCCC
Q ss_conf             2470210021
Q gi|254780395|r  544 VLNSTSLFTQ  553 (762)
Q Consensus       544 ~fd~~nLF~~  553 (762)
                      .|+..|.|+.
T Consensus       478 ~Fd~~npy~g  487 (651)
T d1m1ca_         478 AFDTANPYCG  487 (651)
T ss_dssp             SSSSCCTTSS
T ss_pred             CCCCCCCCCC
T ss_conf             2677886435


No 6  
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=20.23  E-value=14  Score=11.26  Aligned_cols=37  Identities=14%  Similarity=0.217  Sum_probs=21.9

Q ss_pred             EEEEEEEEECCCCEEEEEEEEECCCCCC--CEEEEEEEE
Q ss_conf             8998999972565699999995165454--122565699
Q gi|254780395|r  684 TIQSRIKFKINDVLSADASLKWNMRAEL--PSHSIGLAY  720 (762)
Q Consensus       684 ~~~~~~~~~l~~~w~~~~~~~ydl~~~~--~~~~~Gl~Y  720 (762)
                      .+.+++.+.++++|++.+.++|.--.+.  ....+|+.|
T Consensus       108 ~~G~Gvey~l~~n~~~~~eY~~~~~~~~d~~~~~~Gv~Y  146 (148)
T d1qj8a_         108 SYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGY  146 (148)
T ss_dssp             EEEEEEEECSSTTEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCEEEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf             696217998068879999999974799433069999898


No 7  
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.52  E-value=15  Score=10.86  Aligned_cols=17  Identities=12%  Similarity=0.169  Sum_probs=7.7

Q ss_pred             EEEECCCCEEEEEEEEEEE
Q ss_conf             9997668979999879999
Q gi|254780395|r   59 IVLNSEGSTTTAVGNVKIE   77 (762)
Q Consensus        59 ~~~~~~~~~~~a~G~v~i~   77 (762)
                      |..|.+..++  .|.|.|.
T Consensus        25 l~~d~~~~~~--~G~v~I~   41 (208)
T d3b7sa2          25 CSVDFTRRTL--TGTAALT   41 (208)
T ss_dssp             EEEETTTTEE--EEEEEEE
T ss_pred             EEECCCCCEE--EEEEEEE
T ss_conf             9984899999--9999999


No 8  
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=15.72  E-value=17  Score=10.57  Aligned_cols=16  Identities=25%  Similarity=0.588  Sum_probs=9.8

Q ss_pred             ECEEEEECCCCCCEEEEE
Q ss_conf             010343024652014554
Q gi|254780395|r  243 GIPYYLVISDNSDATFTF  260 (762)
Q Consensus       243 ~~Pyy~~i~~~~D~Tltp  260 (762)
                      .+||||  ++.+|+.|.-
T Consensus         7 ~vP~FW--SdQ~d~~iq~   22 (97)
T d1d7ya3           7 ELPWYW--SDQGALRIQV   22 (97)
T ss_dssp             CCCEEE--EEETTEEEEE
T ss_pred             CCCCEE--ECCCCCEEEE
T ss_conf             899178--5057972599


No 9  
>d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]}
Probab=15.61  E-value=17  Score=10.55  Aligned_cols=67  Identities=9%  Similarity=0.173  Sum_probs=45.8

Q ss_pred             EEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEEE
Q ss_conf             6889999996474089999987226754466632589989999725656999999951654541225656996
Q gi|254780395|r  649 RRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQ  721 (762)
Q Consensus       649 ~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~~~~~Gl~Y~  721 (762)
                      ....+.+.|..+++.+.+.|......     .+...+.+++.|.|+++.++.+.+.++-.+ .....+|+.|.
T Consensus       222 ~~~~~~~~y~~g~~~~~~~y~~~~~~-----~~~~~~~lg~~Y~ls~~~~l~a~~~~~~~~-~~~a~~Gv~~~  288 (289)
T d3prna_         222 DQVTLYGNYAFGATTVRAYVSDIDRA-----GADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFD  288 (289)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEECST-----TCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEE
T ss_pred             EEEEEEEEEEECCEEEEEEEEECCCC-----CCCCEEEEEEEEECCCCEEEEEEEEEEECC-CCEEEEEEEEE
T ss_conf             37999999983888999999615778-----764189999999849984999999998089-82572565776


No 10 
>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]}
Probab=14.27  E-value=19  Score=10.32  Aligned_cols=158  Identities=11%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             EECCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf             00463478878888884288606632300378841333334543336667788876644379999884367779999998
Q gi|254780395|r  561 RIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTL  640 (762)
Q Consensus       561 Rie~~~r~~~Gl~~~~~~~~~~~~~~~iGQ~~~~~~~~~~~~~~~~~~~~~sgl~~~~SD~v~~~~~~~~~~~~l~~~~~  640 (762)
                      +++.++.+.+.+++........++.+.+|=.+.-..-.  ........+...+..+....+       |.....+.++.+
T Consensus       105 ~l~~a~~~dLn~~~~ll~~~~y~lg~~~Gyqy~~~~wt--AyGGsy~y~~~~~~r~~~g~~-------p~~~~~ItY~q~  175 (297)
T d1i78a_         105 QLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFT--ARGGSYIYSSEEGFRDDIGSF-------PNGERAIGYKQR  175 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEE--EECCEEEBCCTTCSSCBCCBC-------CTTCSEEEEEEE
T ss_pred             CCCHHHEEEECCCEEEEECCCEEEEEEEEEEEEECCEE--ECCCCEECCCCCCCCCCCCCC-------CCCCCEEEEEEE
T ss_conf             75425303130435898168758977731487524367--347547837988765434656-------788626777768


Q ss_pred             ECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCE------------------EEEEEEEEEECCCCEEEEEE
Q ss_conf             616766066889999996474089999987226754466632------------------58998999972565699999
Q gi|254780395|r  641 INPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDAR------------------KTIQSRIKFKINDVLSADAS  702 (762)
Q Consensus       641 ~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~------------------~~~~~~~~~~l~~~w~~~~~  702 (762)
                      |     ..-+.-+..+|+.+++.++..-.|..--...+.|+.                  -.+.+.+.+.++++|+++..
T Consensus       176 ~-----~~~yiGL~g~y~~~~~~f~~~l~ys~wv~a~d~D~H~lR~~~~~f~~~~~~~~~~~v~~~a~Y~vt~~~s~~ve  250 (297)
T d1i78a_         176 F-----KMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVE  250 (297)
T ss_dssp             E-----EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             E-----EEEEEEEEEEEEECCEEEEEEEEECEEEECCCCCCCEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEE
T ss_conf             7-----67788677899806659988885031430378842200357754430368865799999887997898799999


Q ss_pred             EEEC-CCC---------------CCCEEEEEEEEECCEEEEEEEEE
Q ss_conf             9951-654---------------54122565699646699999999
Q gi|254780395|r  703 LKWN-MRA---------------ELPSHSIGLAYQNDCATVKIIYK  732 (762)
Q Consensus       703 ~~yd-l~~---------------~~~~~~~Gl~Y~~~Cw~~~l~y~  732 (762)
                      .+|+ ...               .......|+..++--.+++|.|+
T Consensus       251 ~~y~~~~~~~G~t~~~~~~tg~ss~~~d~ag~~~~~~tis~Gl~y~  296 (297)
T d1i78a_         251 GAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYT  296 (297)
T ss_dssp             EEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEECCCCEEEECCCCCCCEECCEEEEEEEEEE
T ss_conf             9999998014863899658872673157557120142999844565


Done!