Query gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 762 No_of_seqs 218 out of 1458 Neff 8.8 Searched_HMMs 13730 Date Wed Jun 1 04:10:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780395.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1t16a_ f.4.3.4 (A:) Long-chai 65.0 2.5 0.00018 16.2 24.8 85 648-732 324-418 (427) 2 d2pora_ f.4.3.1 (A:) Porin {Rh 50.8 4.3 0.00031 14.6 11.8 69 650-721 231-300 (301) 3 d1x1na1 c.1.8.1 (A:2-524) Amyl 45.7 1.8 0.00013 17.1 -0.3 35 206-240 8-42 (523) 4 d1qjpa_ f.4.1.1 (A:) Outer mem 35.9 7.2 0.00052 13.1 17.4 23 684-706 122-144 (171) 5 d1m1ca_ e.42.1.1 (A:) L-A viru 32.8 8 0.00059 12.8 2.3 10 544-553 478-487 (651) 6 d1qj8a_ f.4.1.1 (A:) Outer mem 20.2 14 0.00098 11.3 15.3 37 684-720 108-146 (148) 7 d3b7sa2 b.98.1.1 (A:1-208) Leu 17.5 15 0.0011 10.9 7.4 17 59-77 25-41 (208) 8 d1d7ya3 d.87.1.1 (A:309-405) N 15.7 17 0.0012 10.6 0.9 16 243-260 7-22 (97) 9 d3prna_ f.4.3.1 (A:) Porin {Rh 15.6 17 0.0013 10.6 15.6 67 649-721 222-288 (289) 10 d1i78a_ f.4.4.1 (A:) Outer mem 14.3 19 0.0014 10.3 20.3 158 561-732 105-296 (297) No 1 >d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]} Probab=65.05 E-value=2.5 Score=16.16 Aligned_cols=85 Identities=7% Similarity=0.039 Sum_probs=52.1 Q ss_pred EEEEEEEEEEECC-CCEEEEEEEEECCCCC-------CCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCC-E-EEEE Q ss_conf 6688999999647-4089999987226754-------466632589989999725656999999951654541-2-2565 Q gi|254780395|r 648 TRRTDTTIDYTMG-SYEANISYTHIPAYPL-------YAYDARKTIQSRIKFKINDVLSADASLKWNMRAELP-S-HSIG 717 (762) Q Consensus 648 ~~r~~~~~~~~~~-~~~~~~~y~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~-~-~~~G 717 (762) .....++++|+.. ++.+.++|.|...-.. .-...+..+++++.++++++|.+...+.|-...+.. . ..+. T Consensus 324 ~~~~~~G~ey~~~~~l~lR~Gy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~~~~~~~~~~~~ 403 (427) T d1t16a_ 324 AYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQ 403 (427) T ss_dssp EEEEEEEEEECCSSSEEEEEEEEEECCSSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEECCEEEEETTEE T ss_pred EEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCE T ss_conf 48999878998356699999999746777765546434678988999889898489869999999997475310267300 Q ss_pred EEEECCEEEEEEEEE Q ss_conf 699646699999999 Q gi|254780395|r 718 LAYQNDCATVKIIYK 732 (762) Q Consensus 718 l~Y~~~Cw~~~l~y~ 732 (762) ..++..-|.+.+.+. T Consensus 404 ~~~~~~~~~~~~~~~ 418 (427) T d1t16a_ 404 FESEGKAWLFGTNFN 418 (427) T ss_dssp EEEEEEEEEEEEEEE T ss_pred EEEEEEEEEEEEEEE T ss_conf 478878999999999 No 2 >d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]} Probab=50.79 E-value=4.3 Score=14.59 Aligned_cols=69 Identities=10% Similarity=0.035 Sum_probs=48.0 Q ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCC-CCCCEEEEEEEEE Q ss_conf 88999999647408999998722675446663258998999972565699999995165-4541225656996 Q gi|254780395|r 650 RTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMR-AELPSHSIGLAYQ 721 (762) Q Consensus 650 r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~-~~~~~~~~Gl~Y~ 721 (762) ...+.+.|..+++.+...|...+... .++..++.+++.++|+++..+.+.+.+.-. ++.....+|+.|. T Consensus 231 ~~~~~~~y~~g~~~~~~~y~~~~~~~---~~~~~~~~lG~~Y~Lsk~t~ly~~y~~~~~d~~~~~~~~G~~~~ 300 (301) T d2pora_ 231 AYGLSVDSTFGATTVGGYVQVLDIDT---IDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFK 300 (301) T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETT---TEEEEEEEEEEEEEEETTEEEEEEEEEECSSSCCCEEEEEEEEE T ss_pred EEEEEEEEEECCEEEEEEEEEECCCC---CCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEE T ss_conf 01134689713247889999841688---88636999999997899979999999983589873799964998 No 3 >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} Probab=45.72 E-value=1.8 Score=17.12 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=21.9 Q ss_pred EEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 06863254001245554545410005641333343 Q gi|254780395|r 206 NSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF 240 (762) Q Consensus 206 vPv~y~Py~~~P~~~~~R~sGfL~P~~~~s~~~G~ 240 (762) .|.-|+=++..++|..+|++|.|+|-++.-+..|. T Consensus 8 ~~~~~~~~~p~~~~~~~R~~Gvllh~~SLp~~~Gi 42 (523) T d1x1na1 8 FPIDYADWLPKRDPNDRRRAGILLHPTSFPGPYGI 42 (523) T ss_dssp CCTTGGGCCCCCCGGGCCEEEEECCGGGSCCTTSS T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC T ss_conf 89762000767677777344898667557999989 No 4 >d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]} Probab=35.92 E-value=7.2 Score=13.09 Aligned_cols=23 Identities=9% Similarity=0.443 Sum_probs=14.8 Q ss_pred EEEEEEEEECCCCEEEEEEEEEC Q ss_conf 89989999725656999999951 Q gi|254780395|r 684 TIQSRIKFKINDVLSADASLKWN 706 (762) Q Consensus 684 ~~~~~~~~~l~~~w~~~~~~~yd 706 (762) .+.+++.++++++|.+.+.++|- T Consensus 122 ~~G~G~~y~i~~~~~l~~ey~~~ 144 (171) T d1qjpa_ 122 VFAGGVEYAITPEIATRLEYQWT 144 (171) T ss_dssp EEEEEEEEEEETTEEEEEEEEEE T ss_pred EEEEEEEEEECCCEEEEEEEEEE T ss_conf 79827999927997999999999 No 5 >d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces cerevisiae virus L-A [TaxId: 11008]} Probab=32.81 E-value=8 Score=12.76 Aligned_cols=10 Identities=0% Similarity=0.288 Sum_probs=4.5 Q ss_pred CCCCHHHCCC Q ss_conf 2470210021 Q gi|254780395|r 544 VLNSTSLFTQ 553 (762) Q Consensus 544 ~fd~~nLF~~ 553 (762) .|+..|.|+. T Consensus 478 ~Fd~~npy~g 487 (651) T d1m1ca_ 478 AFDTANPYCG 487 (651) T ss_dssp SSSSCCTTSS T ss_pred CCCCCCCCCC T ss_conf 2677886435 No 6 >d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]} Probab=20.23 E-value=14 Score=11.26 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=21.9 Q ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCC--CEEEEEEEE Q ss_conf 8998999972565699999995165454--122565699 Q gi|254780395|r 684 TIQSRIKFKINDVLSADASLKWNMRAEL--PSHSIGLAY 720 (762) Q Consensus 684 ~~~~~~~~~l~~~w~~~~~~~ydl~~~~--~~~~~Gl~Y 720 (762) .+.+++.+.++++|++.+.++|.--.+. ....+|+.| T Consensus 108 ~~G~Gvey~l~~n~~~~~eY~~~~~~~~d~~~~~~Gv~Y 146 (148) T d1qj8a_ 108 SYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGY 146 (148) T ss_dssp EEEEEEEECSSTTEEEEEEEEEEEETTEEEEEEEEEEEE T ss_pred EEEEEEEEEECCCEEEEEEEEEEECCCCEEEEEEEEEEE T ss_conf 696217998068879999999974799433069999898 No 7 >d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=17.52 E-value=15 Score=10.86 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=7.7 Q ss_pred EEEECCCCEEEEEEEEEEE Q ss_conf 9997668979999879999 Q gi|254780395|r 59 IVLNSEGSTTTAVGNVKIE 77 (762) Q Consensus 59 ~~~~~~~~~~~a~G~v~i~ 77 (762) |..|.+..++ .|.|.|. T Consensus 25 l~~d~~~~~~--~G~v~I~ 41 (208) T d3b7sa2 25 CSVDFTRRTL--TGTAALT 41 (208) T ss_dssp EEEETTTTEE--EEEEEEE T ss_pred EEECCCCCEE--EEEEEEE T ss_conf 9984899999--9999999 No 8 >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Probab=15.72 E-value=17 Score=10.57 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=9.8 Q ss_pred ECEEEEECCCCCCEEEEE Q ss_conf 010343024652014554 Q gi|254780395|r 243 GIPYYLVISDNSDATFTF 260 (762) Q Consensus 243 ~~Pyy~~i~~~~D~Tltp 260 (762) .+|||| ++.+|+.|.- T Consensus 7 ~vP~FW--SdQ~d~~iq~ 22 (97) T d1d7ya3 7 ELPWYW--SDQGALRIQV 22 (97) T ss_dssp CCCEEE--EEETTEEEEE T ss_pred CCCCEE--ECCCCCEEEE T ss_conf 899178--5057972599 No 9 >d3prna_ f.4.3.1 (A:) Porin {Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]} Probab=15.61 E-value=17 Score=10.55 Aligned_cols=67 Identities=9% Similarity=0.173 Sum_probs=45.8 Q ss_pred EEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEEE Q ss_conf 6889999996474089999987226754466632589989999725656999999951654541225656996 Q gi|254780395|r 649 RRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQ 721 (762) Q Consensus 649 ~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~~~~~Gl~Y~ 721 (762) ....+.+.|..+++.+.+.|...... .+...+.+++.|.|+++.++.+.+.++-.+ .....+|+.|. T Consensus 222 ~~~~~~~~y~~g~~~~~~~y~~~~~~-----~~~~~~~lg~~Y~ls~~~~l~a~~~~~~~~-~~~a~~Gv~~~ 288 (289) T d3prna_ 222 DQVTLYGNYAFGATTVRAYVSDIDRA-----GADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFD 288 (289) T ss_dssp SEEEEEEEEEETTEEEEEEEEEECST-----TCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEE T ss_pred EEEEEEEEEEECCEEEEEEEEECCCC-----CCCCEEEEEEEEECCCCEEEEEEEEEEECC-CCEEEEEEEEE T ss_conf 37999999983888999999615778-----764189999999849984999999998089-82572565776 No 10 >d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]} Probab=14.27 E-value=19 Score=10.32 Aligned_cols=158 Identities=11% Similarity=0.101 Sum_probs=0.0 Q ss_pred EECCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEE Q ss_conf 00463478878888884288606632300378841333334543336667788876644379999884367779999998 Q gi|254780395|r 561 RIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTL 640 (762) Q Consensus 561 Rie~~~r~~~Gl~~~~~~~~~~~~~~~iGQ~~~~~~~~~~~~~~~~~~~~~sgl~~~~SD~v~~~~~~~~~~~~l~~~~~ 640 (762) +++.++.+.+.+++........++.+.+|=.+.-..-. ........+...+..+....+ |.....+.++.+ T Consensus 105 ~l~~a~~~dLn~~~~ll~~~~y~lg~~~Gyqy~~~~wt--AyGGsy~y~~~~~~r~~~g~~-------p~~~~~ItY~q~ 175 (297) T d1i78a_ 105 QLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFT--ARGGSYIYSSEEGFRDDIGSF-------PNGERAIGYKQR 175 (297) T ss_dssp EEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEE--EECCEEEBCCTTCSSCBCCBC-------CTTCSEEEEEEE T ss_pred CCCHHHEEEECCCEEEEECCCEEEEEEEEEEEEECCEE--ECCCCEECCCCCCCCCCCCCC-------CCCCCEEEEEEE T ss_conf 75425303130435898168758977731487524367--347547837988765434656-------788626777768 Q ss_pred ECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCE------------------EEEEEEEEEECCCCEEEEEE Q ss_conf 616766066889999996474089999987226754466632------------------58998999972565699999 Q gi|254780395|r 641 INPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDAR------------------KTIQSRIKFKINDVLSADAS 702 (762) Q Consensus 641 ~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~------------------~~~~~~~~~~l~~~w~~~~~ 702 (762) | ..-+.-+..+|+.+++.++..-.|..--...+.|+. -.+.+.+.+.++++|+++.. T Consensus 176 ~-----~~~yiGL~g~y~~~~~~f~~~l~ys~wv~a~d~D~H~lR~~~~~f~~~~~~~~~~~v~~~a~Y~vt~~~s~~ve 250 (297) T d1i78a_ 176 F-----KMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVE 250 (297) T ss_dssp E-----EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEE T ss_pred E-----EEEEEEEEEEEEECCEEEEEEEEECEEEECCCCCCCEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEE T ss_conf 7-----67788677899806659988885031430378842200357754430368865799999887997898799999 Q ss_pred EEEC-CCC---------------CCCEEEEEEEEECCEEEEEEEEE Q ss_conf 9951-654---------------54122565699646699999999 Q gi|254780395|r 703 LKWN-MRA---------------ELPSHSIGLAYQNDCATVKIIYK 732 (762) Q Consensus 703 ~~yd-l~~---------------~~~~~~~Gl~Y~~~Cw~~~l~y~ 732 (762) .+|+ ... .......|+..++--.+++|.|+ T Consensus 251 ~~y~~~~~~~G~t~~~~~~tg~ss~~~d~ag~~~~~~tis~Gl~y~ 296 (297) T d1i78a_ 251 GAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYT 296 (297) T ss_dssp EEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEE T ss_pred EEEEEEEEECCCCEEEECCCCEEEECCCCCCCEECCEEEEEEEEEE T ss_conf 9999998014863899658872673157557120142999844565 Done!