RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] (762 letters) >gnl|CDD|31641 COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]. Length = 784 Score = 305 bits (783), Expect = 2e-83 Identities = 180/737 (24%), Positives = 296/737 (40%), Gaps = 49/737 (6%) Query: 47 NRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLI 106 ++ I +D + N + TA GNV+I Y Y L A + ++ K R+ A+GN++ I Sbjct: 48 QNLPKILIEADALEYNRKDQIITAEGNVEILYGDYRLLADKVDYDQKTDRVTATGNVEYI 107 Query: 107 EPDKRQIHAEYLDITDDFTNGIIKNLTIKIPADETYLTASSAQIIG-QRTIFDKGTYTAC 165 + D I + D+ D G + N + + A SA+ TI TYT C Sbjct: 108 DGDGILIKGDKADVNLDTKKGFVSNFRYQTVGRQGRFVAKSAERRDNDVTILKNATYTTC 167 Query: 166 SSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKT 225 C P W VK+ + I NR+ E+ G +FY P PD+ RK+ Sbjct: 168 EPCDN-----PIWSVKASKIIQNREKQFAVFWNARFEVGGVPVFYLPYFFFPDDD-RRKS 221 Query: 226 GFLTPLFSSGEKQRFGVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTL 285 GFL P F + F G PYY ++ N D T T K+G E E R F +G L Sbjct: 222 GFLIPSFGYSSRNGFSYGQPYYWNLAPNYDLTLTPQYMSKRGFGLEGEFRYLFSNGAGQL 281 Query: 286 HAAYMYNNN-------VESGEERHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYS 338 A + ++ E R + +F+ N W G +++ + ++ Sbjct: 282 RGAGLPQDDSYYFGDDTRGNEVRWRYYWNHSGDFDQNR-WKFGVDVERVSDPNYFNDFDI 340 Query: 339 DALSKRININQIYLTGTGEKNSFDMRALHYHIQE---PLSKNEKKFPQANIYPLIDYRYV 395 S ++ + YLT G +N F + L++ +Q NEK N P +DY Y Sbjct: 341 RYSS--VSTSDGYLTQLGRRNYFALENLNFGLQIKYFQNLTNEKDNKPYNALPQLDYNYY 398 Query: 396 DLQYAKSQQISITGNITAISRAKE-KNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIG 454 L +++ T + + + + + + +P + RLS+ W Sbjct: 399 -LNDPVLGELNFTLDSQFVRFSNDDDYMPERTRLHVEPSL------RLSLSNSW-GSFGT 450 Query: 455 PLGILFTPIANIRGDLHYLSFNRDLSSDTISNNPNFVAS--KMLTAGLDIRYPIVAVTQK 512 G+L TP A RGD + + N D S N M + G R P++ Sbjct: 451 ESGLLATPYALDRGDAYDVDTNTA---DKASKFVNRSLPQRNMDSGGTLERDPLLFGIG- 506 Query: 513 SRHILEGIAQVYAATDEKYIK-TIPNEDSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLG 571 LE AQ E + NEDS SL + ++LF NR+SG+DRIEG N+ +LG Sbjct: 507 YTQTLEPRAQYLYRPYEDQSGIPLYNEDSQSLQFDYSNLFRDNRYSGYDRIEGANQLSLG 566 Query: 572 IRYIGSFNNLFT-INGVIGRSIHILGTNSF-SIPDSIGIGQNSGLEDKFSDYAAAVRLSL 629 +R + + F +N G+S + G+ D + +G++ D + LS Sbjct: 567 VRSRFTDDAGFERLNASAGQSYYFKGSRLLIPSDDKVPVGRSPWESAATYDINDGLNLSG 626 Query: 630 SPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAY-DARKTIQSR 688 S + S + R + + + Y +I Y Y + + + Sbjct: 627 SVQYDPSLNRRSLGSSGAEYRPEFKKIIQLNYRYLSDEYIYISLQSSYGYKNKISQLGAS 686 Query: 689 IKFKINDVLSADASLKWNMRAELPSH-SIGLAYQNDCATVKIIYKNESPNIHGYK----- 742 + + S + +++RA+ P +G+AYQ+ C V++ S + + Sbjct: 687 AGYPLTKNWSVFGRIYYDLRADKPLERFLGVAYQSSCWAVRLGLSRYSNSRNNNDRLHLK 746 Query: 743 ----IQARLSLRTIGDF 755 I +SLR +GD Sbjct: 747 FDSSIGFNISLRGLGDI 763 >gnl|CDD|113232 pfam04453, OstA_C, Organic solvent tolerance protein. Family involved in organic solvent tolerance in bacteria. The region contains several highly conserved, potentially catalytic, residues. Length = 382 Score = 146 bits (370), Expect = 2e-35 Identities = 90/411 (21%), Positives = 146/411 (35%), Gaps = 47/411 (11%) Query: 301 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKN- 359 +++ + + +F IN W+ G + NY+ D S +Q YL G + Sbjct: 1 KNRGYVFAKHQFRINDNWSFGVDYTYVSD----KNYFRDYSSNLGLRSQTYLLRQGRLSY 56 Query: 360 -----SFDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYV-DLQYAKSQQISITGNITA 413 F +RA +Y S P P +DY Y + S Sbjct: 57 RGENWDFSLRAQYYQTLRD-SIISNDTPY-QRLPQLDYNYYLPDLFLGGLDFSFDSQYR- 113 Query: 414 ISRAKEKNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYL 473 + RL +E + P G TP ++RG + L Sbjct: 114 ----NFARDDDDQPGT-----------RLHLEPELSLPFSTPWGF-LTPELSLRGTYYDL 157 Query: 474 SFNRDLSSDTISNNPNFVASKMLTAGLDIRYPIVAVTQ---KSRHILEGIAQVYAATDEK 530 N + + V+ + T LD P T+ LE AQ Y + Sbjct: 158 DVNYGPGNRITGGLDSSVSRVLPTFSLDSGLPFERDTELGGGYTQTLEPRAQ-YLYVPYR 216 Query: 531 YIKTIPNEDSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSF-NNLFTINGVIG 589 +PN DS SL + T+LF NRFSG+DRIE NR G+ N + +G Sbjct: 217 DQGNLPNFDSSSLDFDYTNLFRDNRFSGYDRIEDANRLTYGLTSRFFDDNGGERLRLSLG 276 Query: 590 RSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTR 649 +S ++ + F + D SGL +FSD A + + + ++ S+ +P Sbjct: 277 QSFYLSDSRVFLVGD------ESGLTRRFSDLVAELSFNPNEGLSLSSSIQYDPNTNRFE 330 Query: 650 RTDTTIDYT--MGSYEANISYTHIPAYPLYAY---DARKTIQSRIKFKIND 695 R + + Y G+ N+ Y + P Y Y + I ++ + Sbjct: 331 RAEVGLSYRPDRGNS-INLGYRYRRDDPDYQYATNNGISQIGLSAQYPLAR 380 >gnl|CDD|145241 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4.6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides. Length = 343 Score = 30.7 bits (70), Expect = 1.5 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Query: 44 NETNRHSELDISSDEIVLNSEGSTTTA-VGNVKIE 77 +T SEL + +V++++G T A VG VKIE Sbjct: 240 GKTRYLSELKAGDEVLVVDADGRTREAIVGRVKIE 274 >gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]. Length = 835 Score = 30.3 bits (68), Expect = 2.3 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 16/94 (17%) Query: 578 FNNLFTINGVIGRSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLS-----LSPK 632 +N ++G+I IL + D++ IG SG K S A +R + P Sbjct: 646 VSNF--VSGLI-----ILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPN 698 Query: 633 ITFSTQTLINPKDWSTRRTDTTIDYTMG-SYEAN 665 F T+ +IN WS R T T + +G +Y ++ Sbjct: 699 SAFITEQVIN---WSLRDTTTRLVIPVGVAYGSD 729 >gnl|CDD|33927 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]. Length = 673 Score = 29.7 bits (66), Expect = 3.1 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 262 PHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEERHQAMLASIAE 311 +P+ G EL + + L N +S ER+Q + A + E Sbjct: 381 GNPEIPHYGRDELGRIAQLLRLLL---QRVNEKTQSLRERNQELQAEVEE 427 >gnl|CDD|37240 KOG2029, KOG2029, KOG2029, Uncharacterized conserved protein [Function unknown]. Length = 697 Score = 28.1 bits (62), Expect = 8.4 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 484 ISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIP 536 I N+P S L + + P + S+ + ++ T + Y IP Sbjct: 29 IKNSPPPHGSLGLGGSIFLVSPSSSF---SKKSVFDLSAAALETAKSYSAVIP 78 >gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.. Length = 365 Score = 28.0 bits (63), Expect = 9.8 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 4/36 (11%) Query: 163 TACSSCSKPNSRPP----FWIVKSKRAILNRKTHTI 194 T C +C + S P WI + KR TI Sbjct: 104 TECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTI 139 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.317 0.134 0.392 Gapped Lambda K H 0.267 0.0672 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 9,177,877 Number of extensions: 490911 Number of successful extensions: 969 Number of sequences better than 10.0: 1 Number of HSP's gapped: 957 Number of HSP's successfully gapped: 13 Length of query: 762 Length of database: 6,263,737 Length adjustment: 101 Effective length of query: 661 Effective length of database: 4,081,228 Effective search space: 2697691708 Effective search space used: 2697691708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (27.4 bits)