RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780395|ref|YP_003064808.1| organic solvent tolerance
protein [Candidatus Liberibacter asiaticus str. psy62]
(762 letters)
>gnl|CDD|31641 COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope
biogenesis, outer membrane].
Length = 784
Score = 305 bits (783), Expect = 2e-83
Identities = 180/737 (24%), Positives = 296/737 (40%), Gaps = 49/737 (6%)
Query: 47 NRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLI 106
++ I +D + N + TA GNV+I Y Y L A + ++ K R+ A+GN++ I
Sbjct: 48 QNLPKILIEADALEYNRKDQIITAEGNVEILYGDYRLLADKVDYDQKTDRVTATGNVEYI 107
Query: 107 EPDKRQIHAEYLDITDDFTNGIIKNLTIKIPADETYLTASSAQIIG-QRTIFDKGTYTAC 165
+ D I + D+ D G + N + + A SA+ TI TYT C
Sbjct: 108 DGDGILIKGDKADVNLDTKKGFVSNFRYQTVGRQGRFVAKSAERRDNDVTILKNATYTTC 167
Query: 166 SSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKT 225
C P W VK+ + I NR+ E+ G +FY P PD+ RK+
Sbjct: 168 EPCDN-----PIWSVKASKIIQNREKQFAVFWNARFEVGGVPVFYLPYFFFPDDD-RRKS 221
Query: 226 GFLTPLFSSGEKQRFGVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTL 285
GFL P F + F G PYY ++ N D T T K+G E E R F +G L
Sbjct: 222 GFLIPSFGYSSRNGFSYGQPYYWNLAPNYDLTLTPQYMSKRGFGLEGEFRYLFSNGAGQL 281
Query: 286 HAAYMYNNN-------VESGEERHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYS 338
A + ++ E R + +F+ N W G +++ + ++
Sbjct: 282 RGAGLPQDDSYYFGDDTRGNEVRWRYYWNHSGDFDQNR-WKFGVDVERVSDPNYFNDFDI 340
Query: 339 DALSKRININQIYLTGTGEKNSFDMRALHYHIQE---PLSKNEKKFPQANIYPLIDYRYV 395
S ++ + YLT G +N F + L++ +Q NEK N P +DY Y
Sbjct: 341 RYSS--VSTSDGYLTQLGRRNYFALENLNFGLQIKYFQNLTNEKDNKPYNALPQLDYNYY 398
Query: 396 DLQYAKSQQISITGNITAISRAKE-KNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIG 454
L +++ T + + + + + + +P + RLS+ W
Sbjct: 399 -LNDPVLGELNFTLDSQFVRFSNDDDYMPERTRLHVEPSL------RLSLSNSW-GSFGT 450
Query: 455 PLGILFTPIANIRGDLHYLSFNRDLSSDTISNNPNFVAS--KMLTAGLDIRYPIVAVTQK 512
G+L TP A RGD + + N D S N M + G R P++
Sbjct: 451 ESGLLATPYALDRGDAYDVDTNTA---DKASKFVNRSLPQRNMDSGGTLERDPLLFGIG- 506
Query: 513 SRHILEGIAQVYAATDEKYIK-TIPNEDSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLG 571
LE AQ E + NEDS SL + ++LF NR+SG+DRIEG N+ +LG
Sbjct: 507 YTQTLEPRAQYLYRPYEDQSGIPLYNEDSQSLQFDYSNLFRDNRYSGYDRIEGANQLSLG 566
Query: 572 IRYIGSFNNLFT-INGVIGRSIHILGTNSF-SIPDSIGIGQNSGLEDKFSDYAAAVRLSL 629
+R + + F +N G+S + G+ D + +G++ D + LS
Sbjct: 567 VRSRFTDDAGFERLNASAGQSYYFKGSRLLIPSDDKVPVGRSPWESAATYDINDGLNLSG 626
Query: 630 SPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAY-DARKTIQSR 688
S + S + R + + + Y +I Y Y + + +
Sbjct: 627 SVQYDPSLNRRSLGSSGAEYRPEFKKIIQLNYRYLSDEYIYISLQSSYGYKNKISQLGAS 686
Query: 689 IKFKINDVLSADASLKWNMRAELPSH-SIGLAYQNDCATVKIIYKNESPNIHGYK----- 742
+ + S + +++RA+ P +G+AYQ+ C V++ S + +
Sbjct: 687 AGYPLTKNWSVFGRIYYDLRADKPLERFLGVAYQSSCWAVRLGLSRYSNSRNNNDRLHLK 746
Query: 743 ----IQARLSLRTIGDF 755
I +SLR +GD
Sbjct: 747 FDSSIGFNISLRGLGDI 763
>gnl|CDD|113232 pfam04453, OstA_C, Organic solvent tolerance protein. Family
involved in organic solvent tolerance in bacteria. The
region contains several highly conserved, potentially
catalytic, residues.
Length = 382
Score = 146 bits (370), Expect = 2e-35
Identities = 90/411 (21%), Positives = 146/411 (35%), Gaps = 47/411 (11%)
Query: 301 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKN- 359
+++ + + +F IN W+ G + NY+ D S +Q YL G +
Sbjct: 1 KNRGYVFAKHQFRINDNWSFGVDYTYVSD----KNYFRDYSSNLGLRSQTYLLRQGRLSY 56
Query: 360 -----SFDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYV-DLQYAKSQQISITGNITA 413
F +RA +Y S P P +DY Y + S
Sbjct: 57 RGENWDFSLRAQYYQTLRD-SIISNDTPY-QRLPQLDYNYYLPDLFLGGLDFSFDSQYR- 113
Query: 414 ISRAKEKNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYL 473
+ RL +E + P G TP ++RG + L
Sbjct: 114 ----NFARDDDDQPGT-----------RLHLEPELSLPFSTPWGF-LTPELSLRGTYYDL 157
Query: 474 SFNRDLSSDTISNNPNFVASKMLTAGLDIRYPIVAVTQ---KSRHILEGIAQVYAATDEK 530
N + + V+ + T LD P T+ LE AQ Y +
Sbjct: 158 DVNYGPGNRITGGLDSSVSRVLPTFSLDSGLPFERDTELGGGYTQTLEPRAQ-YLYVPYR 216
Query: 531 YIKTIPNEDSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSF-NNLFTINGVIG 589
+PN DS SL + T+LF NRFSG+DRIE NR G+ N + +G
Sbjct: 217 DQGNLPNFDSSSLDFDYTNLFRDNRFSGYDRIEDANRLTYGLTSRFFDDNGGERLRLSLG 276
Query: 590 RSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTR 649
+S ++ + F + D SGL +FSD A + + + ++ S+ +P
Sbjct: 277 QSFYLSDSRVFLVGD------ESGLTRRFSDLVAELSFNPNEGLSLSSSIQYDPNTNRFE 330
Query: 650 RTDTTIDYT--MGSYEANISYTHIPAYPLYAY---DARKTIQSRIKFKIND 695
R + + Y G+ N+ Y + P Y Y + I ++ +
Sbjct: 331 RAEVGLSYRPDRGNS-INLGYRYRRDDPDYQYATNNGISQIGLSAQYPLAR 380
>gnl|CDD|145241 pfam01959, DHQS, 3-dehydroquinate synthase (EC 4.6.1.3).
3-Dehydroquinate synthase is an enzyme in the common
pathway of aromatic amino acid biosynthesis that
catalyses the conversion of
3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP)
into 3-dehydroquinic acid. This synthesis of aromatic
amino acids is an essential metabolic function for most
prokaryotic as well as lower eukaryotic cells, including
plants. The pathway is absent in humans; therefore, DHQS
represents a potential target for the development of
novel and selective antimicrobial agents. Owing to the
threat posed by the spread of pathogenic bacteria
resistant to many currently used antimicrobial drugs,
there is clearly a need to develop new anti-infective
drugs acting at novel targets. A further potential use
for DHQS inhibitors is as herbicides.
Length = 343
Score = 30.7 bits (70), Expect = 1.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 44 NETNRHSELDISSDEIVLNSEGSTTTA-VGNVKIE 77
+T SEL + +V++++G T A VG VKIE
Sbjct: 240 GKTRYLSELKAGDEVLVVDADGRTREAIVGRVKIE 274
>gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 30.3 bits (68), Expect = 2.3
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 578 FNNLFTINGVIGRSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLS-----LSPK 632
+N ++G+I IL + D++ IG SG K S A +R + P
Sbjct: 646 VSNF--VSGLI-----ILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPN 698
Query: 633 ITFSTQTLINPKDWSTRRTDTTIDYTMG-SYEAN 665
F T+ +IN WS R T T + +G +Y ++
Sbjct: 699 SAFITEQVIN---WSLRDTTTRLVIPVGVAYGSD 729
>gnl|CDD|33927 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 29.7 bits (66), Expect = 3.1
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 262 PHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEERHQAMLASIAE 311
+P+ G EL + + L N +S ER+Q + A + E
Sbjct: 381 GNPEIPHYGRDELGRIAQLLRLLL---QRVNEKTQSLRERNQELQAEVEE 427
>gnl|CDD|37240 KOG2029, KOG2029, KOG2029, Uncharacterized conserved protein
[Function unknown].
Length = 697
Score = 28.1 bits (62), Expect = 8.4
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 484 ISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIP 536
I N+P S L + + P + S+ + ++ T + Y IP
Sbjct: 29 IKNSPPPHGSLGLGGSIFLVSPSSSF---SKKSVFDLSAAALETAKSYSAVIP 78
>gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the
GT1 family of glycosyltransferases. wcfI in Bacteroides
fragilis has been shown to be involved in the capsular
polysaccharide biosynthesis..
Length = 365
Score = 28.0 bits (63), Expect = 9.8
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 163 TACSSCSKPNSRPP----FWIVKSKRAILNRKTHTI 194
T C +C + S P WI + KR TI
Sbjct: 104 TECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTI 139
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,177,877
Number of extensions: 490911
Number of successful extensions: 969
Number of sequences better than 10.0: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 13
Length of query: 762
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 661
Effective length of database: 4,081,228
Effective search space: 2697691708
Effective search space used: 2697691708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)