RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] (762 letters) >2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:) Length = 159 Score = 60.9 bits (147), Expect = 6e-10 Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 12/152 (7%) Query: 45 ETNRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNI- 103 + + I SD+ L+ +G+ T GNV + ++A + Sbjct: 3 TGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDG 62 Query: 104 --KLIEPDKRQIHAEYLDITDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFD--K 159 K + Q + + ++ + + + + YL + I G + + + Sbjct: 63 YGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVL-TGNAYLQQVDSNIKGDKITYLVKE 121 Query: 160 GTYTACSSCSKPNSRPPFWIVKSKRAILNRKT 191 A S + L K Sbjct: 122 QKMQAFSDKG------KRVTTVLVPSQLQDKN 147 >1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} (A:) Length = 113 Score = 30.8 bits (69), Expect = 0.58 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 5/99 (5%) Query: 267 GILGEMELRKYFHSGKHTLHAAYMYNNNVESGEERHQAMLASIAEFEINPIWNLGWHLKK 326 G + LRK SG + + E QA + + + Sbjct: 13 GTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITV 72 Query: 327 ----QTSGQLSYNYYSDALSK-RININQIYLTGTGEKNS 360 G +S + + LSK ++ QI L + +K + Sbjct: 73 GSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSVDKLA 111 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 30.1 bits (67), Expect = 0.92 Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 51/188 (27%) Query: 353 TGTGEKNSFDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNIT 412 +GTG+ +F + L PQA L ++ I +T Sbjct: 167 SGTGKTAAFALTMLSRVDA------SVPKPQAIC----------LAPSRELARQIMDVVT 210 Query: 413 AISRAKEKNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHY 472 + + E T ++ + I ++ TP G + Sbjct: 211 EMGKYTEVKTAFG-----------------IKDSVPKGAKIDAQIVIGTP-----GTVMD 248 Query: 473 LSFNRDLSSDTISNNPNFV---ASKMLTAG--LDIRYPIVAVTQKSRHILEGIAQVYAAT 527 L R L + FV A ML D I + ++ I+ +++AT Sbjct: 249 LMKRRQLD---ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIV-----LFSAT 300 Query: 528 DEKYIKTI 535 + ++ Sbjct: 301 FSERVEKY 308 >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} (A:46-466) Length = 421 Score = 28.3 bits (61), Expect = 3.1 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 11/35 (31%) Query: 575 IGSFNNLFTINGVIGRSIHILGTNSFS--IPDSIG 607 +F+ TI GT +FS + + Sbjct: 395 SYTFSQPVTIG---------KGTTTFSGTVTQPLK 420 >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} (A:343-523) Length = 181 Score = 28.5 bits (63), Expect = 3.3 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 491 VASKMLTAGL----DIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKT 534 V +++ GL ++ + +T+ +R +L G + + A Sbjct: 130 VIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALK 177 >2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} (A:940-1134) Length = 195 Score = 27.2 bits (60), Expect = 7.6 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 24/86 (27%) Query: 666 ISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQNDCA 725 +S H P + +D +K ++DVL S+K N + L YQ Sbjct: 43 LSELHAP-FTRAGWDVKK---------MDDVLDGTWSVKVNGLTQ----KGTLVYQTIPQ 88 Query: 726 TVK----------IIYKNESPNIHGY 741 VK Y++ S +I+ Sbjct: 89 NVKFEAGAKYKVSFDYQSGSDDIYAI 114 >2odj_A Porin D; outer membrane protein, beta-barrel, amino acid transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1} (A:) Length = 428 Score = 27.0 bits (59), Expect = 7.8 Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 8/90 (8%) Query: 284 TLHAAYMYNNNVESGEERHQAMLASIAEFEINPIWNLG--WHLKKQTSGQLSYNYYSDAL 341 L A + + + + A+ A +G + + S L D Sbjct: 151 DLEAGHFTEGKEPTTVKSRGELYATYAGETAKSADFIGGRYAITDNLSASLYGAELED-- 208 Query: 342 SKRININQIYLTGTGEKNSFDMRALHYHIQ 371 Q YL ++L + Sbjct: 209 ----IYRQYYLNSNYTIPLASDQSLGFDFN 234 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.134 0.392 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 5,664,543 Number of extensions: 255730 Number of successful extensions: 479 Number of sequences better than 10.0: 1 Number of HSP's gapped: 477 Number of HSP's successfully gapped: 9 Length of query: 762 Length of database: 4,956,049 Length adjustment: 95 Effective length of query: 667 Effective length of database: 1,744,574 Effective search space: 1163630858 Effective search space used: 1163630858 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.7 bits)