RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780395|ref|YP_003064808.1| organic solvent tolerance
protein [Candidatus Liberibacter asiaticus str. psy62]
         (762 letters)



>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO,
           structural genomics, montreal-kingston bacterial
           structural genomics initiative, BSGI; 2.16A {Escherichia
           coli K12} PDB: 2r1a_A (A:)
          Length = 159

 Score = 60.9 bits (147), Expect = 6e-10
 Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 12/152 (7%)

Query: 45  ETNRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNI- 103
             +    + I SD+  L+ +G+  T  GNV +      ++A  +                
Sbjct: 3   TGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDG 62

Query: 104 --KLIEPDKRQIHAEYLDITDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFD--K 159
             K     + Q + + ++      +  +    + +     YL    + I G +  +   +
Sbjct: 63  YGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVL-TGNAYLQQVDSNIKGDKITYLVKE 121

Query: 160 GTYTACSSCSKPNSRPPFWIVKSKRAILNRKT 191
               A S                  + L  K 
Sbjct: 122 QKMQAFSDKG------KRVTTVLVPSQLQDKN 147


>1v1q_A Primosomal replication protein N; primosome, DNA
           replication, DNA binding; 2.1A {Escherichia coli} (A:)
          Length = 113

 Score = 30.8 bits (69), Expect = 0.58
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 5/99 (5%)

Query: 267 GILGEMELRKYFHSGKHTLHAAYMYNNNVESGEERHQAMLASIAEFEINPIWNLGWHLKK 326
           G +    LRK   SG         + +  E      QA          +    +   +  
Sbjct: 13  GTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITV 72

Query: 327 ----QTSGQLSYNYYSDALSK-RININQIYLTGTGEKNS 360
                  G +S +   + LSK  ++  QI L  + +K +
Sbjct: 73  GSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSVDKLA 111


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 30.1 bits (67), Expect = 0.92
 Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 51/188 (27%)

Query: 353 TGTGEKNSFDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNIT 412
           +GTG+  +F +  L               PQA            L  ++     I   +T
Sbjct: 167 SGTGKTAAFALTMLSRVDA------SVPKPQAIC----------LAPSRELARQIMDVVT 210

Query: 413 AISRAKEKNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHY 472
            + +  E  T                      ++  +   I    ++ TP     G +  
Sbjct: 211 EMGKYTEVKTAFG-----------------IKDSVPKGAKIDAQIVIGTP-----GTVMD 248

Query: 473 LSFNRDLSSDTISNNPNFV---ASKMLTAG--LDIRYPIVAVTQKSRHILEGIAQVYAAT 527
           L   R L      +   FV   A  ML      D    I  +  ++  I+     +++AT
Sbjct: 249 LMKRRQLD---ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIV-----LFSAT 300

Query: 528 DEKYIKTI 535
             + ++  
Sbjct: 301 FSERVEKY 308


>1o6v_A Internalin A; bacterial infection, extracellular
           recognition, cell WALL attached, leucine rich repeat;
           1.5A {Listeria monocytogenes} (A:46-466)
          Length = 421

 Score = 28.3 bits (61), Expect = 3.1
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 11/35 (31%)

Query: 575 IGSFNNLFTINGVIGRSIHILGTNSFS--IPDSIG 607
             +F+   TI           GT +FS  +   + 
Sbjct: 395 SYTFSQPVTIG---------KGTTTFSGTVTQPLK 420


>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
           helix-turn-helix, ATP binding, Zn(2+) binding,
           hydrolase; 1.80A {Escherichia coli} (A:343-523)
          Length = 181

 Score = 28.5 bits (63), Expect = 3.3
 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 491 VASKMLTAGL----DIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKT 534
           V  +++  GL      ++  + +T+ +R +L G + +  A        
Sbjct: 130 VIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALK 177


>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel,
           glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
           (A:940-1134)
          Length = 195

 Score = 27.2 bits (60), Expect = 7.6
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 24/86 (27%)

Query: 666 ISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQNDCA 725
           +S  H P +    +D +K         ++DVL    S+K N   +       L YQ    
Sbjct: 43  LSELHAP-FTRAGWDVKK---------MDDVLDGTWSVKVNGLTQ----KGTLVYQTIPQ 88

Query: 726 TVK----------IIYKNESPNIHGY 741
            VK            Y++ S +I+  
Sbjct: 89  NVKFEAGAKYKVSFDYQSGSDDIYAI 114


>2odj_A Porin D; outer membrane protein, beta-barrel, amino acid
           transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1}
           (A:)
          Length = 428

 Score = 27.0 bits (59), Expect = 7.8
 Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 8/90 (8%)

Query: 284 TLHAAYMYNNNVESGEERHQAMLASIAEFEINPIWNLG--WHLKKQTSGQLSYNYYSDAL 341
            L A +       +  +    + A+ A         +G  + +    S  L      D  
Sbjct: 151 DLEAGHFTEGKEPTTVKSRGELYATYAGETAKSADFIGGRYAITDNLSASLYGAELED-- 208

Query: 342 SKRININQIYLTGTGEKNSFDMRALHYHIQ 371
                  Q YL           ++L +   
Sbjct: 209 ----IYRQYYLNSNYTIPLASDQSLGFDFN 234


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 5,664,543
Number of extensions: 255730
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 9
Length of query: 762
Length of database: 4,956,049
Length adjustment: 95
Effective length of query: 667
Effective length of database: 1,744,574
Effective search space: 1163630858
Effective search space used: 1163630858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)