BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780395|ref|YP_003064808.1| organic solvent tolerance
protein [Candidatus Liberibacter asiaticus str. psy62]
(762 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 762
Score = 1568 bits (4060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/762 (100%), Positives = 762/762 (100%)
Query: 1 MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIKKNETNRHSELDISSDEIV 60
MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIKKNETNRHSELDISSDEIV
Sbjct: 1 MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIKKNETNRHSELDISSDEIV 60
Query: 61 LNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDI 120
LNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDI
Sbjct: 61 LNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDI 120
Query: 121 TDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIV 180
TDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIV
Sbjct: 121 TDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIV 180
Query: 181 KSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF 240
KSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF
Sbjct: 181 KSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF 240
Query: 241 GVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEE 300
GVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEE
Sbjct: 241 GVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEE 300
Query: 301 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKNS 360
RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKNS
Sbjct: 301 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKNS 360
Query: 361 FDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEK 420
FDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEK
Sbjct: 361 FDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEK 420
Query: 421 NTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLS 480
NTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLS
Sbjct: 421 NTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLS 480
Query: 481 SDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIPNEDS 540
SDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIPNEDS
Sbjct: 481 SDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIPNEDS 540
Query: 541 HSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSF 600
HSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSF
Sbjct: 541 HSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSF 600
Query: 601 SIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG 660
SIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG
Sbjct: 601 SIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG 660
Query: 661 SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAY 720
SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAY
Sbjct: 661 SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAY 720
Query: 721 QNDCATVKIIYKNESPNIHGYKIQARLSLRTIGDFNPIDIDG 762
QNDCATVKIIYKNESPNIHGYKIQARLSLRTIGDFNPIDIDG
Sbjct: 721 QNDCATVKIIYKNESPNIHGYKIQARLSLRTIGDFNPIDIDG 762
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 27.7 bits (60), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 289 YMYNNNVESGEERHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININ 348
Y+++ V++ H ML + +EI+ + + +L +Q S S N+ + LSK I+
Sbjct: 616 YIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYL-RQASVTWSQNFIARVLSKNPTIS 674
Query: 349 QIYLT 353
Q+ +
Sbjct: 675 QLLFS 679
>gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 433
Score = 26.9 bits (58), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 543 LVLNSTSLFTQNRFSGFDRIEGGNRTNL 570
+VLNS +L + +F GFD + GG +L
Sbjct: 296 IVLNSQALAKKLQFLGFDIVSGGTDNHL 323
>gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 234
Score = 25.0 bits (53), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 444 IEADWRKKIIGPLGILFTPIANIRGDLHYLS 474
I DW K ++ + F P+ N+R + ++S
Sbjct: 57 INVDWHKVVVTLVDERFVPLENLRSNQSFIS 87
>gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter
asiaticus str. psy62]
Length = 671
Score = 25.0 bits (53), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 80 GYHLSARDITFNHKNHR 96
GY +SA+D+ F+ + HR
Sbjct: 644 GYEVSAKDVAFSEEVHR 660
>gi|255764482|ref|YP_003065169.2| methyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 225
Score = 24.6 bits (52), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 27 PPSNEQTTTSTPSKIKK 43
PP NE+ T TP KIK+
Sbjct: 98 PPFNERIGTMTPDKIKE 114
>gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 306
Score = 24.3 bits (51), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 10 GATTFFLAFNIITPQGTPPSNE 31
GA F NI TP G+ P NE
Sbjct: 172 GAARFNYLLNIATPIGSEPRNE 193
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,735
Number of Sequences: 1233
Number of extensions: 21834
Number of successful extensions: 67
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 17
length of query: 762
length of database: 328,796
effective HSP length: 81
effective length of query: 681
effective length of database: 228,923
effective search space: 155896563
effective search space used: 155896563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)