BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] (762 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] Length = 762 Score = 1568 bits (4060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 762/762 (100%), Positives = 762/762 (100%) Query: 1 MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIKKNETNRHSELDISSDEIV 60 MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIKKNETNRHSELDISSDEIV Sbjct: 1 MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIKKNETNRHSELDISSDEIV 60 Query: 61 LNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDI 120 LNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDI Sbjct: 61 LNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDI 120 Query: 121 TDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIV 180 TDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIV Sbjct: 121 TDDFTNGIIKNLTIKIPADETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIV 180 Query: 181 KSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF 240 KSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF Sbjct: 181 KSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRF 240 Query: 241 GVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEE 300 GVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEE Sbjct: 241 GVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEE 300 Query: 301 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKNS 360 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKNS Sbjct: 301 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEKNS 360 Query: 361 FDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEK 420 FDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEK Sbjct: 361 FDMRALHYHIQEPLSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEK 420 Query: 421 NTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLS 480 NTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLS Sbjct: 421 NTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLS 480 Query: 481 SDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIPNEDS 540 SDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIPNEDS Sbjct: 481 SDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIPNEDS 540 Query: 541 HSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSF 600 HSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSF Sbjct: 541 HSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSF 600 Query: 601 SIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG 660 SIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG Sbjct: 601 SIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG 660 Query: 661 SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAY 720 SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAY Sbjct: 661 SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAY 720 Query: 721 QNDCATVKIIYKNESPNIHGYKIQARLSLRTIGDFNPIDIDG 762 QNDCATVKIIYKNESPNIHGYKIQARLSLRTIGDFNPIDIDG Sbjct: 721 QNDCATVKIIYKNESPNIHGYKIQARLSLRTIGDFNPIDIDG 762 >gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 1576 Score = 27.7 bits (60), Expect = 0.63, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 289 YMYNNNVESGEERHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININ 348 Y+++ V++ H ML + +EI+ + + +L +Q S S N+ + LSK I+ Sbjct: 616 YIFHERVDNDSFNHLIMLTDLRVYEISVLRSYARYL-RQASVTWSQNFIARVLSKNPTIS 674 Query: 349 QIYLT 353 Q+ + Sbjct: 675 QLLFS 679 >gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 433 Score = 26.9 bits (58), Expect = 1.3, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 543 LVLNSTSLFTQNRFSGFDRIEGGNRTNL 570 +VLNS +L + +F GFD + GG +L Sbjct: 296 IVLNSQALAKKLQFLGFDIVSGGTDNHL 323 >gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 25.0 bits (53), Expect = 4.3, Method: Compositional matrix adjust. Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 444 IEADWRKKIIGPLGILFTPIANIRGDLHYLS 474 I DW K ++ + F P+ N+R + ++S Sbjct: 57 INVDWHKVVVTLVDERFVPLENLRSNQSFIS 87 >gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter asiaticus str. psy62] Length = 671 Score = 25.0 bits (53), Expect = 4.8, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 13/17 (76%) Query: 80 GYHLSARDITFNHKNHR 96 GY +SA+D+ F+ + HR Sbjct: 644 GYEVSAKDVAFSEEVHR 660 >gi|255764482|ref|YP_003065169.2| methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 225 Score = 24.6 bits (52), Expect = 6.5, Method: Compositional matrix adjust. Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 27 PPSNEQTTTSTPSKIKK 43 PP NE+ T TP KIK+ Sbjct: 98 PPFNERIGTMTPDKIKE 114 >gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 306 Score = 24.3 bits (51), Expect = 7.1, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 10 GATTFFLAFNIITPQGTPPSNE 31 GA F NI TP G+ P NE Sbjct: 172 GAARFNYLLNIATPIGSEPRNE 193 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.134 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 500,735 Number of Sequences: 1233 Number of extensions: 21834 Number of successful extensions: 67 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 17 length of query: 762 length of database: 328,796 effective HSP length: 81 effective length of query: 681 effective length of database: 228,923 effective search space: 155896563 effective search space used: 155896563 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)