HHsearch alignment for GI: 254780396 and conserved domain: PRK10788
>PRK10788 peptidyl-prolyl cis-trans isomerase (rotamase D); Provisional.
Probab=100.00 E-value=2.2e-40 Score=274.45 Aligned_cols=310 Identities=13% Similarity=0.131 Sum_probs=235.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCHHHHHHHHHHH----HHHCC--------
Q ss_conf 957999999999999999999999999998402321134826999886786889999999998----73035--------
Q gi|254780396|r 1 MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL----KLQKI-------- 68 (317)
Q Consensus 1 ~~~~~~~~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvA~Vng~~It~~e~~~~~~~~----~~~~~-------- 68 (317)
T Consensus 1 ML~~iR~~~~~~~~killgliil~Fv~~Gv~~~~~~-~~~~~va~Vng~~Is~~e~~~~~~~~~~~~~~~~G~~~~~~~~ 79 (622)
T PRK10788 1 MMDNLRTAANSVVLKIILGLIILSFILTGVGGYLIG-GSNNYAAKVNGQEISRAQLEQAFQSERNRMQQQLGDQFSELAA 79 (622)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 928886166098999999999999998224523658-9997489999998489999999999999999872755661121
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----03599999999999999986420012234445668999999---97313430356777765311245546999999
Q gi|254780396|r 69 ----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141 (317)
Q Consensus 69 ----~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~---~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~ 141 (317)
T Consensus 80 ~e~~~~~l~~qvl~~LI~~~lL~q~A~~lGl~vsd~~v~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~g~t~~~f~~~~r~~ 159 (622)
T PRK10788 80 NEGYMKQLRQQVLNRLIDEALLDQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNRYNAILNQMGMTADQYAQALRNQ 159 (622)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 35689999999999999999999999986998799999999984856432699599999999997599999999999999
Q ss_pred HHHHHHHHHH---------------------------------HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 8999999998---------------------------------4320355589998644321110011002333221024
Q gi|254780396|r 142 SIWPDVVKND---------------------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188 (317)
Q Consensus 142 l~~~~~~~~~---------------------------------~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (317)
T Consensus 160 l~~~ql~~~i~~~~~~~~~e~~~~~~~~~q~R~v~~~~i~~~~~~~~~~vtd~el~~yY~~nk~~f~~pe~~~i~yv~l~ 239 (622)
T PRK10788 160 LTTQQLINGVAGTDFMLPGETDELAALVLQQRVVREATIDVNALAAKQTVTDQEIQSYYDQNKNNFMAPEQFRVSYIKLD 239 (622)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHCCCCCCCHHHHHHHHHHCHHHHCCCCEEEEEEEEEC
T ss_conf 99999999976426679999999999974211468899746770566899999999999956554068634888999835
Q ss_pred CCC---CCCHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCC
Q ss_conf 675---44479999--------------------------864357886522332489999852013-225687467527
Q gi|254780396|r 189 DNK---LQNQGFVQ--------------------------KRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238 (317)
Q Consensus 189 ~~~---~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~lg~~~ 238 (317)
T Consensus 240 ~~~~~~~vs~~ei~~~Y~~~~~~~~~pe~r~~~~I~~~~~~~A~~~~~~l~~G~dFa~lA~~~S~D~~Sa~~gGdLG~~~ 319 (622)
T PRK10788 240 AATMQQTVSDADIQAYYDQHQDQFTQPERKRYSIIQTKTEDEAKAVLDELKKGADFATLAKEKSTDIISARNGGDMGWLE 319 (622)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 66702458999999999987775177411664301058999999999998769986999998378953212477313426
Q ss_pred HHHCCHHHHHHCCCCCCCCCCCEEECCEEEEEEEECCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5561367665112457880123763894899998223578--844578999999999999999999999999975
Q gi|254780396|r 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311 (317)
Q Consensus 239 ~~~l~~~~~~~~~~~~G~is~pv~t~~G~hiikv~~~r~~--~~~~~~~~~i~~~l~~~~~~~~~~~~l~~Lr~~ 311 (317)
T Consensus 320 ~g~~~~~f~~a~~~~~GevS~pV~t~fG~hiikv~~i~~~~~~~~eevk~eI~~~l~~~~a~~~~~~~~~~~~d~ 394 (622)
T PRK10788 320 DATTPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDA 394 (622)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 664428999988746798678476078238999832466778998999999999999999999999999999887