HHsearch alignment of GI: 254780396 and MMDB domain: 2kgj_A_
>2kgj_A (A:) Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=99.24 E-value=9.2e-12 Score=92.84 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHHHHCCCCC
Q ss_conf 100233322102467544479999864357886522332489999852013-2256874675275561367665112457
Q gi|254780396|r 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ 254 (317)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~~~~~~~~ 254 (317)
..+.++||++.. . ..+.........+..|...+..++... +...||++||+..+.+|+.+++++.+++
T Consensus 4 ~~v~~~~I~~~~-------~----~~A~~~~~~l~~g~~F~~lA~~~S~d~~~~~~gG~lg~~~~~~l~~~~~~~~~l~~ 72 (102)
T 2kgj_A 4 QRTRYSIIQTKT-------E----DEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEK 72 (102)
T ss_dssp CEEEEEEEEESS-------H----HHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCCST
T ss_pred CEEEEEEEEECC-------H----HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCC
T ss_conf 168752164089-------9----99999999988799999999986789652344775523558888979999998289
Q ss_pred CCCCCCEEECCEEEEEEEECCCCCCC
Q ss_conf 88012376389489999822357884
Q gi|254780396|r 255 NNTTNPYVTQKGVEYIAICDKRDLGG 280 (317)
Q Consensus 255 G~is~pv~t~~G~hiikv~~~r~~~~ 280 (317)
|++|+||++++||||++|.++++...
T Consensus 73 G~vs~pi~~~~G~~I~~v~~~~~~~~ 98 (102)
T 2kgj_A 73 GQLSGVIKSSVGFLIVRLDDIQAAHH 98 (102)
T ss_dssp TCEEEEEEETTEEEEEEEEEEECSST
T ss_pred CCCCCCEEECCEEEEEEEEEEECCCC
T ss_conf 98343579799999999936865554