Query gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 317 No_of_seqs 145 out of 3262 Neff 10.2 Searched_HMMs 23785 Date Mon May 30 10:14:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780396.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1m5y_A SurviVal protein, survi 100.0 2.1E-38 8.7E-43 260.6 25.6 280 36-317 2-406 (408) 2 2pv1_A Chaperone SURA; surviVa 99.5 9.3E-15 3.9E-19 110.8 6.4 101 176-276 1-103 (103) 3 3i6c_A Peptidyl-prolyl CIS-tra 99.5 1.7E-14 7.2E-19 109.2 6.6 102 173-274 10-123 (123) 4 1yw5_A Peptidyl prolyl CIS/tra 99.5 5.2E-14 2.2E-18 106.1 7.4 100 175-274 65-177 (177) 5 3gpk_A PPIC-type peptidyl-prol 99.5 3.4E-14 1.4E-18 107.3 6.4 102 175-279 5-107 (112) 6 2itk_A Peptidyl-prolyl CIS-tra 99.5 5.3E-14 2.2E-18 106.1 6.7 101 174-274 55-167 (167) 7 2jzv_A Foldase protein PRSA; p 99.4 5.9E-14 2.5E-18 105.8 5.3 100 175-274 5-111 (111) 8 1jns_A Peptidyl-prolyl CIS-tra 99.4 2E-13 8.4E-18 102.4 6.5 66 210-275 25-91 (92) 9 1j6y_A Peptidyl-prolyl CIS-tra 99.4 6.8E-14 2.9E-18 105.4 2.5 101 174-274 23-139 (139) 10 2kgj_A Peptidyl-prolyl CIS-tra 99.4 4.1E-13 1.7E-17 100.5 5.6 70 210-279 27-97 (102) 11 1eq3_A Peptidyl-prolyl CIS/tra 99.3 1.9E-12 7.9E-17 96.2 5.3 87 178-276 3-96 (96) 12 1zk6_A Foldase protein PRSA; a 99.1 5.2E-11 2.2E-15 87.1 5.8 89 176-275 3-93 (93) 13 1m5y_A SurviVal protein, survi 98.6 3.3E-06 1.4E-10 56.7 14.1 78 201-278 178-256 (408) 14 2nsa_A Trigger factor, TF; cha 96.6 0.036 1.5E-06 31.2 11.0 95 78-174 26-125 (170) 15 3gty_X Trigger factor, TF; cha 94.8 0.078 3.3E-06 29.0 6.5 97 76-174 266-367 (433) 16 1w26_A Trigger factor, TF; cha 93.1 0.38 1.6E-05 24.7 8.2 21 239-259 191-212 (432) 17 1zxj_A MPN555, hypothetical pr 87.4 1.2 5.1E-05 21.5 11.6 85 74-171 83-169 (218) 18 1t11_A Trigger factor, TF; hel 76.1 3.2 0.00013 18.8 6.7 21 239-259 194-215 (392) 19 3mkl_A HTH-type transcriptiona 36.0 16 0.00069 14.3 4.9 42 106-147 26-67 (120) 20 3gbg_A TCP pilus virulence reg 23.3 27 0.0011 12.9 4.9 41 107-147 189-229 (276) 21 2phc_B Uncharacterized protein 22.1 12 0.00052 15.1 -0.5 19 255-273 165-185 (225) No 1 >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Probab=100.00 E-value=2.1e-38 Score=260.58 Aligned_cols=280 Identities=15% Similarity=0.233 Sum_probs=222.9 Q ss_pred CCCCCCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 11348269998867868899999999987303--------5035999999999999999864200122344456689999 Q gi|254780396|r 36 WAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107 (317) Q Consensus 36 ~~~~~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~ 107 (317) +...++|||+|||++||.+||++++..+..+. ....+++++|++||++.|+.++|+++|+.|+++++++++. T Consensus 2 ~~~~~~ivA~Vng~~It~~d~~~~~~~~~~~~~~~~~~~~~~~~lr~qvl~~LI~~~Ll~q~A~~lgi~vsd~ev~~~i~ 81 (408) T 1m5y_A 2 PQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIA 81 (408) T ss_dssp ---CCCEEEEESSSEEEHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH T ss_pred CCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 85347179999999628999999999999987632467984599999999999999999999998499979999999999 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC------------ Q ss_conf 99973134303567777653112455469999998999999998432035558999864432111001------------ Q gi|254780396|r 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------------ 175 (317) Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~------------ 175 (317) .+..+++++.+.+.+.|...|+++..|++.++.++.|.++....+.+.+.+++.++..++........ T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 161 (408) T 1m5y_A 82 NIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILI 161 (408) T ss_dssp HHHHHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTHHHHHHHCC-------CCEEEEEEEE T ss_pred HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHC T ss_conf 99987142378899999973888788888788999999988665321014663567899987431013310332111101 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780396|r 176 -------------------------------------------------------------------------------- 175 (317) Q Consensus 176 -------------------------------------------------------------------------------- 175 (317) T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~i~~~~~~ 241 (408) T 1m5y_A 162 PLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRS 241 (408) T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHTGGGTCCTTCEEEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCC T ss_conf 23331016789998877899999875100499998871236265526863323301100167888765135764454235 Q ss_pred ---------------------CCHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC-CCCCCC Q ss_conf ---------------------100233322102467544479999864357-886522332489999852013-225687 Q gi|254780396|r 176 ---------------------REYLIRTVLFSIPDNKLQNQGFVQKRIKDA-EESRLRLPKDCNKLEKFASKI-HDVSIG 232 (317) Q Consensus 176 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~g 232 (317) ..+.++|+++..... ............. .........++..+..++.++ +...|| T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~il~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~~s~d~~s~~~gg 319 (408) T 1m5y_A 242 GVGFHILKVNDLRGESKNISVTEVHARHILLKPSPI--MTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGG 319 (408) T ss_dssp TTEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCSS--SCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTT T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHCC T ss_conf 542799999987621001333202034444148776--333899999999999987263238999998288955042057 Q ss_pred CCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4675275561367665-11245788012376389489999822357884-457899999999999999999999999997 Q gi|254780396|r 233 KAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310 (317) Q Consensus 233 ~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~~r~~~~-~~~~~~~i~~~l~~~~~~~~~~~~l~~Lr~ 310 (317) ++||+..+.++|.|.. ++.+++|++|+||+|++|||||+|+++++... +...++.|+..|.+++..+.+..|+++||+ T Consensus 320 ~lg~~~~~~~~~~~~~ai~~l~~G~is~pv~t~~G~hii~v~~~~~~~~~~~~~~~~i~~~l~~~k~~~~~~~~l~~lr~ 399 (408) T 1m5y_A 320 DLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRA 399 (408) T ss_dssp EEEEECGGGSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEEEEECC--------HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56667745478899999981899990874783884899999874068887465799999999999999999999999984 Q ss_pred HCCCCCC Q ss_conf 5477509 Q gi|254780396|r 311 NAIIHYY 317 (317) Q Consensus 311 ~A~I~~f 317 (317) +|.|++. T Consensus 400 ~a~I~i~ 406 (408) T 1m5y_A 400 SAYVKIL 406 (408) T ss_dssp HSCEEEC T ss_pred CCEEEEE T ss_conf 5928873 No 2 >2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Probab=99.53 E-value=9.3e-15 Score=110.85 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=77.7 Q ss_pred CCHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCC Q ss_conf 10023332210246754447-99998643578865223324899998520132256874675275561367665-11245 Q gi|254780396|r 176 REYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKS 253 (317) Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~ 253 (317) +++.++|+++.++.+..... ....+.+............|...+..++...+...||++||+..+.+|+.|.. ++.++ T Consensus 1 te~~~~hIli~~~~~~~~~~~~~~~~~a~~~~~~l~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~ 80 (103) T 2pv1_A 1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAK 80 (103) T ss_dssp CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCC T ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC T ss_conf 91689999995899999899999999999999998879999999999676953214895641168877868999997547 Q ss_pred CCCCCCCEEECCEEEEEEEECCC Q ss_conf 78801237638948999982235 Q gi|254780396|r 254 QNNTTNPYVTQKGVEYIAICDKR 276 (317) Q Consensus 254 ~G~is~pv~t~~G~hiikv~~~r 276 (317) +|++|+||+|++||||++|+++| T Consensus 81 ~G~iS~pi~t~~G~hIi~l~~~R 103 (103) T 2pv1_A 81 KGDIVGPIRSGVGFHILKVNDLR 103 (103) T ss_dssp TTCEEEEEEETTEEEEEEEEEEC T ss_pred CCCCCCCEEECCEEEEEEEEEEC T ss_conf 99878748989999999997679 No 3 >3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Probab=99.51 E-value=1.7e-14 Score=109.19 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=75.8 Q ss_pred HCCCCHHHHHHHHHCCCCCC----------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCHHH Q ss_conf 00110023332210246754----------4479999864357886522-332489999852013225687467527556 Q gi|254780396|r 173 ITVREYLIRTVLFSIPDNKL----------QNQGFVQKRIKDAEESRLR-LPKDCNKLEKFASKIHDVSIGKAQYLLESD 241 (317) Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~ 241 (317) ..+..++++||++....... ...+.+.+.+......... ...|...+..+|.+++...||++||+..++ T Consensus 10 ~~p~~vr~~HILi~~~~~~~~~~~~~~~~~~~k~eA~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gG~lg~~~~~~ 89 (123) T 3i6c_A 10 GEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQ 89 (123) T ss_dssp -CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEEETTT T ss_pred CCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 99758999989983688778122100232430999999999999999807440999999957894102499544216887 Q ss_pred CCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEEC Q ss_conf 1367665-11245788012376389489999822 Q gi|254780396|r 242 LHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317) Q Consensus 242 l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317) |++.|.+ ++++++|++|+||+|++|||||+|+| T Consensus 90 l~~ef~~a~~~l~~G~iS~pi~t~~G~HIi~v~e 123 (123) T 3i6c_A 90 MQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 123 (123) T ss_dssp SCHHHHHHHHHSCTTCBCSCEEETTEEEEEEECC T ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCEEEEEEEC T ss_conf 5717887663389998777588089179999839 No 4 >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Probab=99.49 E-value=5.2e-14 Score=106.14 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=75.2 Q ss_pred CCCHHHHHHHHHCCCCC-----------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCHHHC Q ss_conf 11002333221024675-----------444799998643578865223-324899998520132256874675275561 Q gi|254780396|r 175 VREYLIRTVLFSIPDNK-----------LQNQGFVQKRIKDAEESRLRL-PKDCNKLEKFASKIHDVSIGKAQYLLESDL 242 (317) Q Consensus 175 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l 242 (317) ...++++||++...... ....+.+.+.+.+........ ..|...+..+|++.+...||+|||+..++| T Consensus 65 ~~~vr~sHILik~~~s~~~~s~~~~~~i~rskeeA~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~Sa~~GGdLG~~~~~~m 144 (177) T 1yw5_A 65 DGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQM 144 (177) T ss_dssp TSCEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTTSS T ss_pred CCCEEEEEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 88489999988058877823220133332469999999999999998485549999999583220014654332531237 Q ss_pred CHHHHH-HCCCCCCCCCCCEEECCEEEEEEEEC Q ss_conf 367665-11245788012376389489999822 Q gi|254780396|r 243 HPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317) Q Consensus 243 ~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317) ++.|++ ++.+++|++|+||+|++|||||+++. T Consensus 145 ~~~f~~a~~~l~~GeiS~pv~T~~G~HIIk~tG 177 (177) T 1yw5_A 145 QPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177 (177) T ss_dssp CHHHHHHHHTSCTTCBCCCEEETTEEEEEEECC T ss_pred CHHHHHHHHCCCCCCCCCCEEECCEEEEEEEEC T ss_conf 899999998289898377578189089999849 No 5 >3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} Probab=99.49 E-value=3.4e-14 Score=107.27 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=78.8 Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCC Q ss_conf 11002333221024675444799998643578865223324899998520132256874675275561367665-11245 Q gi|254780396|r 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKS 253 (317) Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~ 253 (317) ..++.++||++..+.. ......+.+............|...+..++...+...+|++||+..+++|+.|.+ +++++ T Consensus 5 ~~e~~l~hI~i~~~~~---~~~~~~~~a~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lGw~~~~~l~~~f~~~~~~lk 81 (112) T 3gpk_A 5 TEEYRIGEIFLAATEE---NKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASMG 81 (112) T ss_dssp CCEEEEEEEEEECCGG---GHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCC T ss_pred CCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHCCHHHHHHHHCCC T ss_conf 6478899999828943---5799999999999998879999999999680013221886774353126989999998389 Q ss_pred CCCCCCCEEECCEEEEEEEECCCCCC Q ss_conf 78801237638948999982235788 Q gi|254780396|r 254 QNNTTNPYVTQKGVEYIAICDKRDLG 279 (317) Q Consensus 254 ~G~is~pv~t~~G~hiikv~~~r~~~ 279 (317) +|++|+||++++|||||+|+++|+.. T Consensus 82 ~Gevs~pI~t~~G~hIikl~dkr~G~ 107 (112) T 3gpk_A 82 PGQLAGPVEIRGGFSILYLIDKREGH 107 (112) T ss_dssp TTCEEEEEEETTEEEEEEEEEEECCS T ss_pred CCCCCCCEEECCEEEEEEEEEEECCC T ss_conf 89837547989999999996587774 No 6 >2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} SCOP: b.72.1.1 d.26.1.1 PDB: 2q5a_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 1f8a_B* 3kad_A* 3kaf_A* 2zr6_A* 1nmv_A 1pin_A* 2zr4_A* 2zr5_A* 2zqt_A* 2zqs_A* 2zqv_A* 2zqu_A 2f21_A* 1zcn_A* ... Probab=99.48 E-value=5.3e-14 Score=106.06 Aligned_cols=101 Identities=9% Similarity=0.075 Sum_probs=75.3 Q ss_pred CCCCHHHHHHHHHCCCCC----------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCHHHC Q ss_conf 011002333221024675----------444799998643578865223-324899998520132256874675275561 Q gi|254780396|r 174 TVREYLIRTVLFSIPDNK----------LQNQGFVQKRIKDAEESRLRL-PKDCNKLEKFASKIHDVSIGKAQYLLESDL 242 (317) Q Consensus 174 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l 242 (317) .+.....+||++...... ....+.+...+.......... ..|...+..+|++.+...||++||+..+.| T Consensus 55 ~p~~v~~~hILi~~~~~~~~~s~~~~~i~rsk~eA~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gGdlG~~~~~~~ 134 (167) T 2itk_A 55 EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQM 134 (167) T ss_dssp CCSCEEEEEEEECCTTSSSCCCSSCSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSS T ss_pred CCCEEEEEEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 77523543345503455683221153321599999999999999986033279999998574533223684552136757 Q ss_pred CHHHHH-HCCCCCCCCCCCEEECCEEEEEEEEC Q ss_conf 367665-11245788012376389489999822 Q gi|254780396|r 243 HPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317) Q Consensus 243 ~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317) ++.|.+ ++++++|++|+||+|++|||||+++| T Consensus 135 ~~~f~~~~~~l~~Geis~pi~t~~G~HIi~~~d 167 (167) T 2itk_A 135 QKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 167 (167) T ss_dssp CHHHHHHHHHSCTTCBCCCEEETTEEEEEEECC T ss_pred CHHHHHHHHCCCCCCCCCCEECCCEEEEEEEEC T ss_conf 789999998189998378688289079999949 No 7 >2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Probab=99.45 E-value=5.9e-14 Score=105.79 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=74.3 Q ss_pred CCCHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHHH Q ss_conf 1100233322102467544----47999986435788652-2332489999852013-2256874675275561367665 Q gi|254780396|r 175 VREYLIRTVLFSIPDNKLQ----NQGFVQKRIKDAEESRL-RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248 (317) Q Consensus 175 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~~ 248 (317) ...+.++||++.+...... ..+.+...+.+...... ....|...+..+|... +...||++||+..+++++.|.. T Consensus 5 ~d~~~~sHILi~~~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~~~f~~ 84 (111) T 2jzv_A 5 SDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEK 84 (111) T ss_dssp CSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCHHHHH T ss_pred CCEEEEEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 45026889998068877701004799999999999999982952399999997869410134864577676632699999 Q ss_pred -HCCCCCCCCCCCEEECCEEEEEEEEC Q ss_conf -11245788012376389489999822 Q gi|254780396|r 249 -LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317) Q Consensus 249 -~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317) ++++++|++|+||+|++|||||+|.+ T Consensus 85 ~~~~l~~GeiS~pi~t~~G~hIikvee 111 (111) T 2jzv_A 85 ALFKLKDGEVSEVVKSSFGYHIIKADK 111 (111) T ss_dssp HHHTCCTTCBCCCEEETTEEEEEEECC T ss_pred HHHHCCCCCCCCCEEECCEEEEEEEEC T ss_conf 998489998288788599889999849 No 8 >1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Probab=99.42 E-value=2e-13 Score=102.43 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=58.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEECC Q ss_conf 223324899998520132256874675275561367665-112457880123763894899998223 Q gi|254780396|r 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDK 275 (317) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~~ 275 (317) .....|...+..+|.+++...||++||+..++++|.|.+ ++++++|++|+||+|++|||||+|++| T Consensus 25 ~~g~~F~~lA~~~S~d~s~~~gG~lg~~~~~~l~~~f~~~~~~l~~Gevs~pi~t~~G~HIikv~~r 91 (92) T 1jns_A 25 KNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYR 91 (92) T ss_dssp HHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEEECC T ss_pred HCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCEECCCEEEEEEEEEC T ss_conf 8799999999984899621347866435300125899999983899996777781982899999736 No 9 >1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Probab=99.39 E-value=6.8e-14 Score=105.37 Aligned_cols=101 Identities=9% Similarity=0.063 Sum_probs=74.4 Q ss_pred CCCCHHHHHHHHHCCCCC--------------CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 011002333221024675--------------4447999986435788652-2332489999852013225687467527 Q gi|254780396|r 174 TVREYLIRTVLFSIPDNK--------------LQNQGFVQKRIKDAEESRL-RLPKDCNKLEKFASKIHDVSIGKAQYLL 238 (317) Q Consensus 174 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 238 (317) ....++++||++...... ....+.....+.+...... ....|...+..+|++++...||++||+. T Consensus 23 ~~e~vr~sHILi~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GG~LG~~~ 102 (139) T 1j6y_A 23 SRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFG 102 (139) T ss_dssp SCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEECS T ss_pred CCCEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEC T ss_conf 80138999999805776562110132211112000999999999999999808668999999958421012488562364 Q ss_pred HHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEEC Q ss_conf 5561367665-11245788012376389489999822 Q gi|254780396|r 239 ESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317) Q Consensus 239 ~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317) .++++|.|.+ ++.+++|++|+||+|++|||||+|+. T Consensus 103 ~~~l~~ef~~a~~~l~~GeiS~pi~t~~G~HIikvtA 139 (139) T 1j6y_A 103 RGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 139 (139) T ss_dssp SSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSCC T ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEECCEEEEEEEEC T ss_conf 6655407999998389998487678289279999949 No 10 >2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Probab=99.38 E-value=4.1e-13 Score=100.46 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=61.0 Q ss_pred HHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCEEECCEEEEEEEECCCCCC Q ss_conf 22332489999852013-22568746752755613676651124578801237638948999982235788 Q gi|254780396|r 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279 (317) Q Consensus 210 ~~~~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~~~~~~~~G~is~pv~t~~G~hiikv~~~r~~~ 279 (317) ..+..|...+..+|..+ +...||++||+..+.+|+.|++++.+++|++|+||+|++|||||+|.++|++. T Consensus 27 ~~G~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~~~~a~~~~~G~iS~pi~t~~G~hIikv~d~r~A~ 97 (102) T 2kgj_A 27 NKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQAAH 97 (102) T ss_dssp HHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCCSTTCEEEEEEETTEEEEEEEEEEECSS T ss_pred HCCCCHHHHHHHHCCCCCCCCCCCEECEECCCCCCHHHHHHHHHCCCCCCCCEEECCEEEEEEEEEEECCC T ss_conf 86999999999877894411348562336356369899999983899835558979999999993587655 No 11 >1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} SCOP: d.26.1.1 PDB: 1fjd_A Probab=99.30 E-value=1.9e-12 Score=96.24 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=63.8 Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCC Q ss_conf 02333221024675444799998643578865223324899998520132256874675275561367665-11245788 Q gi|254780396|r 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNN 256 (317) Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~ 256 (317) +.++||++.. . ... .+.......+.+|...+..++.++ +..||++||+..++++++|++ ++++++|+ T Consensus 3 v~vrHIlv~~---~-~~a-------~~i~~~l~~G~~F~~lA~~~S~d~-~~~gG~lG~~~~~~l~~ef~~a~f~l~~g~ 70 (96) T 1eq3_A 3 VKVRHILCEK---H-GKI-------MEAMEKLKSGMRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSG 70 (96) T ss_dssp EEEEEEEECC---C-STH-------HHHHHHHTTTTSHHHHHHHHCCCT-TTCCSEEEEESSCCSSSHHHHHHHHCCSCC T ss_pred EEEEEEEECC---H-HHH-------HHHHHHHHCCCCHHHHHHHCCCCC-CCCCCCCCEECCCCCCHHHHHHHHHCCCCC T ss_conf 7899999868---8-999-------999999887999899998727771-124887655455545779999998188885 Q ss_pred CCC------CEEECCEEEEEEEECCC Q ss_conf 012------37638948999982235 Q gi|254780396|r 257 TTN------PYVTQKGVEYIAICDKR 276 (317) Q Consensus 257 is~------pv~t~~G~hiikv~~~r 276 (317) +|+ ||+|++|||||+|+++| T Consensus 71 is~~~~~~~pi~T~~G~HIi~v~~kr 96 (96) T 1eq3_A 71 MDKPVFTDPPVKTKFGYHIIMVEGRK 96 (96) T ss_dssp SSTTTBCSSCEEETTEEEEEEEEECC T ss_pred CCCCCCCCCCEECCCEEEEEEEEEEC T ss_conf 85666668988758868999997689 No 12 >1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Probab=99.13 E-value=5.2e-11 Score=87.15 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=65.7 Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-HHHCCHHHHH-HCCCC Q ss_conf 100233322102467544479999864357886522332489999852013225687467527-5561367665-11245 Q gi|254780396|r 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQN-LLKKS 253 (317) Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~-~~~l~~~~~~-~~~~~ 253 (317) .++.++||++. .++.+.+ ..........|...+..+|..++...+|.+||+. .+.+|+.+.+ +++++ T Consensus 3 ~~v~v~hIl~~-------~~~~A~~----i~~~l~~g~~F~~lA~~~S~d~~~~~~G~l~~~~~~~~~~~~~~~~~~~l~ 71 (93) T 1zk6_A 3 GKIRASHILVA-------DKKTAEE----VEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLK 71 (93) T ss_dssp CCEEEEEEEES-------SHHHHHH----HHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSC T ss_pred CEEEEEEEEEC-------CHHHHHH----HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC T ss_conf 75999999978-------9999999----999988799999999996779532216775654457861989999998579 Q ss_pred CCCCCCCEEECCEEEEEEEECC Q ss_conf 7880123763894899998223 Q gi|254780396|r 254 QNNTTNPYVTQKGVEYIAICDK 275 (317) Q Consensus 254 ~G~is~pv~t~~G~hiikv~~~ 275 (317) +|++|+||+|++||||++|.|+ T Consensus 72 ~G~vs~Pi~s~~G~hIlkv~dk 93 (93) T 1zk6_A 72 TGEVSDPVKTQYGYHIIKKTEE 93 (93) T ss_dssp TTCBCCCEECSSCEEEEEEEEC T ss_pred CCCCCCCEEECCEEEEEEEECC T ss_conf 9982776896998899999478 No 13 >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Probab=98.56 E-value=3.3e-06 Score=56.68 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=62.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHH-CCCCCCCCCCCEEECCEEEEEEEECCCCC Q ss_conf 6435788652233248999985201322568746752755613676651-12457880123763894899998223578 Q gi|254780396|r 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL 278 (317) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~~-~~~~~G~is~pv~t~~G~hiikv~~~r~~ 278 (317) ..............+...+..++...+...+|.+||+..+.+++.+... ..+++|++++|+++..|||++++.+++.. T Consensus 178 ~~~~~~~~~~~~~~F~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 256 (408) T 1m5y_A 178 QARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE 256 (408) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEEECCC T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 7899999875100499998871236265526863323301100167888765135764454235542799999987621 No 14 >2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} Probab=96.55 E-value=0.036 Score=31.19 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=47.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH- Q ss_conf 9999999998642001223444566899999997313430356777765311245546999999----89999999984- Q gi|254780396|r 78 QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----SIWPDVVKNDF- 152 (317) Q Consensus 78 ~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~----l~~~~~~~~~~- 152 (317) +..+.+.++...+....+.+++..|++.+..+..+..... ....+...|.+.+.|++.++.+ +.+.-++.... T Consensus 26 ~~~~~~~i~~~L~e~~~~~lPe~lv~~e~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~A~~~vk~~lil~~Ia~ 103 (170) T 2nsa_A 26 KESMREQLLEKLPEIVEIEISDRTLEILVNEAINRLKREG--RYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQ 103 (170) T ss_dssp HHHHHHHHHHHGGGGCCCCCCHHHHHHHHHHHHHHHHHHT--CHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999768899989999999999999999988--75544434357898888899999999999999999999 Q ss_pred HHHCCCCHHHHHHHHHHHHHHC Q ss_conf 3203555899986443211100 Q gi|254780396|r 153 MLKYGNLEMEIPANKQKMKNIT 174 (317) Q Consensus 153 ~~~i~~~~~e~~~~~~~~~~~~ 174 (317) ..++.+++.++........... T Consensus 104 ~e~I~vseeei~~~i~~~a~~~ 125 (170) T 2nsa_A 104 EKGISVNDEELEKEAEELAPFW 125 (170) T ss_dssp HHTCCCCHHHHHHHHHHHHHHH T ss_pred HCCCCCCHHHHHHHHHHHHHHC T ss_conf 8389999999999999999886 No 15 >3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A Probab=94.75 E-value=0.078 Score=29.04 Aligned_cols=97 Identities=10% Similarity=0.026 Sum_probs=57.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH Q ss_conf 999999999998642001223444566899999997313430356777765311245546999999----8999999998 Q gi|254780396|r 76 AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----SIWPDVVKND 151 (317) Q Consensus 76 ~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~----l~~~~~~~~~ 151 (317) .......+.++.+......+.+++..++..+..+..+.... .....+...+.+.+.|++.++.+ +.|.-++... T Consensus 266 ~~~~~~~~~i~~~L~~~~~~~lP~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~a~~~vk~~lil~~I 343 (433) T 3gty_X 266 EMKESMREQLLEKLPEIVEIEISDRTLEILVNEAINRLKRE--GRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVL 343 (433) T ss_dssp HHHHHHHHHHHHTHHHHCEEECCHHHHHHHHHHHHHHHHTT--THHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 87888999999999874433587799999999999999986--5565543023317777788999999999999999999 Q ss_pred H-HHHCCCCHHHHHHHHHHHHHHC Q ss_conf 4-3203555899986443211100 Q gi|254780396|r 152 F-MLKYGNLEMEIPANKQKMKNIT 174 (317) Q Consensus 152 ~-~~~i~~~~~e~~~~~~~~~~~~ 174 (317) . ..++.+++.++..+........ T Consensus 344 a~~e~I~vs~eei~~~i~~~a~~~ 367 (433) T 3gty_X 344 AQEKGISVNDEELEKEAEELAPFW 367 (433) T ss_dssp HHHTTCCCCHHHHHHHHTTSTTTT T ss_pred HHHHCCCCCHHHHHHHHHHHHHHC T ss_conf 999489979999999999999984 No 16 >1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Probab=93.08 E-value=0.38 Score=24.70 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=12.2 Q ss_pred HHHCCHHHHH-HCCCCCCCCCC Q ss_conf 5561367665-11245788012 Q gi|254780396|r 239 ESDLHPQFQN-LLKKSQNNTTN 259 (317) Q Consensus 239 ~~~l~~~~~~-~~~~~~G~is~ 259 (317) .+.+.+.|.+ +..+++|+.-. T Consensus 191 ~~~~~~~f~~~l~G~k~Gd~~~ 212 (432) T 1w26_A 191 QGRMIPGFEDGIKGHKAGEEFT 212 (432) T ss_dssp SCCSCTTHHHHSSSCCSSCEEE T ss_pred CCCCCCCHHHHHHHCCCCCEEE T ss_conf 9876630688875324787699 No 17 >1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} Probab=87.36 E-value=1.2 Score=21.50 Aligned_cols=85 Identities=6% Similarity=0.010 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999986420012234445668999999973134--303567777653112455469999998999999998 Q gi|254780396|r 74 KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL--SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151 (317) Q Consensus 74 ~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~~~--~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~ 151 (317) ..+...-+...++........+.+++..|++.+..+..++.. ..+.|. ..-..+++..+++..+.. T Consensus 83 ~~~i~~~~k~~ild~L~e~~~~diPe~mV~~e~~~l~~~~~~~~~~~~~~----------e~AekrVK~~LvL~~Iak-- 150 (218) T 1zxj_A 83 HIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQGAEDNTVQ----------AIAEKIIKKALVFNHLQK-- 150 (218) T ss_dssp HHHHHHHHHHHHHHHHGGGEEEECCHHHHHHHHHHHHHC-----CCHHHH----------HHHHHHHHHHHHHHHHHH-- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-- T ss_conf 99999999999999999757778999999999999999988762388999----------999999999999999999-- Q ss_pred HHHHCCCCHHHHHHHHHHHH Q ss_conf 43203555899986443211 Q gi|254780396|r 152 FMLKYGNLEMEIPANKQKMK 171 (317) Q Consensus 152 ~~~~i~~~~~e~~~~~~~~~ 171 (317) ..++.+++.++........ T Consensus 151 -~e~I~Vsdeev~~~i~~~a 169 (218) T 1zxj_A 151 -EWKVEITDEVVKNVISLYY 169 (218) T ss_dssp -HHTCCCCHHHHHHHHHHHH T ss_pred -HHCCCCCHHHHHHHHHHHH T ss_conf -8089999999999999988 No 18 >1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Probab=76.12 E-value=3.2 Score=18.83 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=12.4 Q ss_pred HHHCCHHHHH-HCCCCCCCCCC Q ss_conf 5561367665-11245788012 Q gi|254780396|r 239 ESDLHPQFQN-LLKKSQNNTTN 259 (317) Q Consensus 239 ~~~l~~~~~~-~~~~~~G~is~ 259 (317) .+.+.+.|.. +..+++|+... T Consensus 194 ~~~~~~~~~~~l~G~k~ge~~~ 215 (392) T 1t11_A 194 AGRMIPGFEDGIVGKTKGMEFV 215 (392) T ss_dssp SCCBSTTSGGGTTTCCSSCCCC T ss_pred CCCCCCCHHHHHCCCCCCCCEE T ss_conf 8866620455521776787416 No 19 >3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli} Probab=36.02 E-value=16 Score=14.33 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=33.9 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999997313430356777765311245546999999899999 Q gi|254780396|r 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147 (317) Q Consensus 106 i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~ 147 (317) +..+++..+++...+...+++.|+++.+|...+|-+.....+ T Consensus 26 l~~lA~~~~~S~~~l~r~fk~~g~t~~~yi~~~Rl~~A~~lL 67 (120) T 3mkl_A 26 LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLI 67 (120) T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999989399999999998399999999999999999986 No 20 >3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} Probab=23.29 E-value=27 Score=12.94 Aligned_cols=41 Identities=7% Similarity=-0.005 Sum_probs=28.2 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99997313430356777765311245546999999899999 Q gi|254780396|r 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147 (317) Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~ 147 (317) +.+++..++|...+.+.+++.|.|+.+|...+|-+-+...+ T Consensus 189 ~~lA~~~~~S~~~l~r~fK~~g~s~~~yi~~~Rl~~A~~lL 229 (276) T 3gbg_A 189 ADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLM 229 (276) T ss_dssp HHHHHHHTCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99999979899999999999698899999999999999999 No 21 >2phc_B Uncharacterized protein PH0987; structural genomics, southeast collaboratory for structural genomics, secsg, X- RAY diffraction, PSI; 2.29A {Pyrococcus horikoshii OT3} SCOP: b.62.1.4 d.74.5.1 Probab=22.11 E-value=12 Score=15.12 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=13.8 Q ss_pred CCCCC--CEEECCEEEEEEEE Q ss_conf 88012--37638948999982 Q gi|254780396|r 255 NNTTN--PYVTQKGVEYIAIC 273 (317) Q Consensus 255 G~is~--pv~t~~G~hiikv~ 273 (317) |.-++ |+.+++|||||=-+ T Consensus 165 g~~t~IYp~~sPGGW~iiG~t 185 (225) T 2phc_B 165 GKQTGWYAIESPGGWRIIGRI 185 (225) T ss_dssp BTEEEEESSSEEECSEEEEEC T ss_pred CCEEEEEECCCCCCEEEEEEC T ss_conf 662699804889823799652 Done!