HHSEARCH alignment of GI: 254780396 and SCOP domain: d1m5ya1

Alignment
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=99.87  E-value=1.3e-21  Score=152.74  Aligned_cols=133  Identities=17%  Similarity=0.296  Sum_probs=121.7

Q ss_pred             CCCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             48269998867868899999999987303--------5035999999999999999864200122344456689999999
Q gi|254780396|r   39 SSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA  110 (317)
Q Consensus        39 ~~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~  110 (317)
                      .|+|||+|||++||.+|+++++.+...+.        ....+++++|+.||+++|+.++|++.|+.+++.+++..+..++
T Consensus         1 VD~VvA~Vn~~~It~~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~vl~~LI~~~Ll~q~a~~~~i~vs~~ev~~~i~~~~   80 (173)
T d1m5ya1           1 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIA   80 (173)
T ss_dssp             CCCEEEEESSSEEEHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             97389988998577999999999999998753577984247999999999999999999987044589999999999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             7313430356777765311245546999999899999999843203555899986443211
Q gi|254780396|r  111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK  171 (317)
Q Consensus       111 ~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~  171 (317)
                      .+++++.+.|.++|.++|+++..|++.++.+++|++++...+.+++.+|+.++..+|....
T Consensus        81 ~~~~~~~~~f~~~L~~~g~~~~~~~~~ir~~l~~~~l~~~~v~~~i~Vt~~Ei~~~~~~~~  141 (173)
T d1m5ya1          81 KQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVD  141 (173)
T ss_dssp             HHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTHHHHHHHCCC
T ss_pred             HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             8858989999999987399899999999999999999999831689869999999999887


SCOP domain information

class: All alpha proteins
fold: Triger factor/SurA peptide-binding domain-like
superfamily: Triger factor/SurA peptide-binding domain-like
family: Porin chaperone SurA, peptide-binding domain
domain: Porin chaperone SurA, peptide-binding domain
species: Escherichia coli [TaxId: 562]