HHSEARCH alignment of GI: 254780396 and SCOP domain: d1w26a1

Alignment
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.39  E-value=0.27  Score=24.11  Aligned_cols=111  Identities=8%  Similarity=0.057  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC----CCCCHHHHHHHHHH
Q ss_conf             88999999999873035035999999999999999864200122344456689999999731----34303567777653
Q gi|254780396|r   52 TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT----GLSAEDFSSFLDKQ  127 (317)
Q Consensus        52 t~~e~~~~~~~~~~~~~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~----~~~~~~~~~~l~~~  127 (317)
                      |..++...++..-.     .......+..+...++........+.+++..|++.+..+..+.    +.....      ..
T Consensus        15 tleelk~~ik~~l~-----~~~~~~~~~~~~~~i~~~L~~~~~~elP~slv~~e~~~~~~~~~~~~~~~~~~------~~   83 (185)
T d1w26a1          15 SVEGLRAEVRKNME-----RELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQ------AL   83 (185)
T ss_dssp             CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHTTTTCCTTS------ST
T ss_pred             CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH------HH
T ss_conf             99999999999999-----99999999999999999999757867978999999999999987740012200------02


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             11245546----99999989999999984320355589998644321110011
Q gi|254780396|r  128 GIGDNHFK----QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR  176 (317)
Q Consensus       128 g~t~~~~~----~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~  176 (317)
                      ......++    ..++..++...+..   ..++.+++.++..........++.
T Consensus        84 e~~~~~~~~~A~~~vk~~lil~~Ia~---~e~i~vt~eei~~~i~~~a~~~~~  133 (185)
T d1w26a1          84 ELPRELFEEQAKRRVVVGLLLGEVIR---TNELKADEERVKGLIEEMASAYED  133 (185)
T ss_dssp             TSCGGGTHHHHHHHHHHHHHHHHHHH---HTTCCCCHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             44589999999999999999999998---736878999999999876521598


SCOP domain information

class: All alpha proteins
fold: Triger factor/SurA peptide-binding domain-like
superfamily: Triger factor/SurA peptide-binding domain-like
family: TF C-terminus
domain: Trigger factor, C-terminal domain
species: Escherichia coli [TaxId: 562]