RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans
isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (317 letters)



>gnl|CDD|35718 KOG0497, KOG0497, KOG0497, Oxidosqualene-lanosterol cyclase and
           related proteins [Lipid transport and metabolism].
          Length = 760

 Score = 29.5 bits (66), Expect = 1.3
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
           RI D     L + +D  K++ F S++ D +    Q LL + L  +F++ L K+ +
Sbjct: 396 RIPDF----LWIAEDGMKMQGFNSQLWDTAFA-LQALLAAGLVDEFRSTLVKAYD 445


>gnl|CDD|35787 KOG0567, KOG0567, KOG0567, HEAT repeat-containing protein [General
           function prediction only].
          Length = 289

 Score = 28.8 bits (64), Expect = 1.9
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 10/118 (8%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K +++  E  ++  +  + ++K A+    +S+  A     S +H     LL +++     
Sbjct: 114 KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFE- 172

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV-KKLRSNAIIHY 316
                    Y A+   R++G E A+ A +      + + +HE  +V  +L+S A I  
Sbjct: 173 --------RYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPS 222


>gnl|CDD|35340 KOG0117, KOG0117, KOG0117, Heterogeneous nuclear ribonucleoprotein
           R (RRM superfamily) [RNA processing and modification].
          Length = 506

 Score = 27.6 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 163 IPANKQK------MKNITVREYLIRTVLFSIPDNKLQNQGF 197
           IP  K+K      MK +T  E ++  +++  PD+K +N+GF
Sbjct: 172 IPKTKKKEEILEEMKKVT--EGVVDVIVYPSPDDKTKNRGF 210


>gnl|CDD|32897 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
           superfamily [General function prediction only].
          Length = 600

 Score = 27.6 bits (61), Expect = 4.2
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           SFL+K G+ D    +   ++   PD    ++ L+   L +  PA+   +  ITV
Sbjct: 216 SFLEKHGLLDAQEYRRRLVEQGNPDASSLNYPLR--PLTISDPAHGPNILLITV 267


>gnl|CDD|33326 COG3523, IcmF, Uncharacterized protein conserved in bacteria
            [Function unknown].
          Length = 1188

 Score = 27.2 bits (60), Expect = 5.6
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 116  SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            S  DF  F    G+ D+ F Q LA     P V   
Sbjct: 988  SLADFERFFGPDGVLDSFFAQNLA-----PFVDTA 1017


>gnl|CDD|33749 COG3968, COG3968, Uncharacterized protein related to glutamine
           synthetase [General function prediction only].
          Length = 724

 Score = 27.3 bits (60), Expect = 6.0
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKIN-----GELEKIAVQELIVETLKKQEIEKSG 94
            RI       V     +  R+     + +      GE   ++V + + + +K+  +EK  
Sbjct: 26  ERIEKMFAENVFNLAVMKARLTKPTFKALKKTIDKGESLDVSVADEVAKAMKEWAMEKGA 85

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
             +     ++F       TGL+AE   +F+D +G G
Sbjct: 86  THY----THWFQPL----TGLTAEKHDAFIDPEGDG 113


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,621,642
Number of extensions: 185416
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 14
Length of query: 317
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,232,491
Effective search space: 943845493
Effective search space used: 943845493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)