RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans
isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (317 letters)



>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein
          A, periplasmic molecular chaperone, membrane protein
          folding, GRAM negative bacteria; 3.00A {Escherichia
          coli} (A:1-70,A:401-408)
          Length = 78

 Score = 36.3 bits (84), Expect = 0.006
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 41 RIRTTINGEVITDGDISKRIALLK--LQKING------ELEKIAVQELIVETLKKQEIEK 92
          ++   +N  V+ + D+   +  +K    +          L    ++ LI++ +  Q  +K
Sbjct: 7  KVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQK 66

Query: 93 SGIT 96
           G+ 
Sbjct: 67 MGVK 70


>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
           periplasmic molecular chaperone, membrane protein
           folding, GRAM negative bacteria; 3.00A {Escherichia
           coli} (A:71-132,A:370-400)
          Length = 93

 Score = 31.6 bits (72), Expect = 0.15
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           A+   ++ +   S L   G+  N ++  +  + I  +V  N+ 
Sbjct: 14  AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEV 56


>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
           anti-parrallel beta sheet, double straded anti-parallel
           beta helix, metal binding protein; 2.00A {Mus musculus}
           (A:269-404)
          Length = 136

 Score = 30.1 bits (68), Expect = 0.44
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 146 DVVKNDF-MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
           D++K++   ++   LE E+       K  T+   L            +    F      +
Sbjct: 20  DLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIR------ELVTKNPFTLGDSSN 73

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            ++S         KL++F+ K+  +  GK +   
Sbjct: 74  PDQS--------EKLQEFSQKLGQIIEGKMKAHF 99


>1ttw_B YSCM2; chaperone, type III secretion; 2.38A {Yersinia pestis
           CO92} (B:)
          Length = 56

 Score = 26.6 bits (58), Expect = 4.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           Q++    IT D     Y  ++HA+NT L+ +D +  L +
Sbjct: 4   QQVSTQAITSDERRFAYAVLEHAKNTILNRQDVAKLLPR 42


>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
           anti-parrallel beta sheet, double straded anti-parallel
           beta helix, metal binding protein; 2.00A {Mus musculus}
           (A:62-188)
          Length = 127

 Score = 25.5 bits (56), Expect = 9.8
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 146 DVVKNDF-MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
           +VVK D    +   L+ EIPA  QK    TV   + R +         Q+Q     R   
Sbjct: 19  EVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAI-----SGLEQDQPT---RRAV 70

Query: 205 AEESRLRLPKDCNKLEKFAS 224
                 R+ +   KL+    
Sbjct: 71  EGAIAERIDEFIGKLKDLKQ 90


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,265,402
Number of extensions: 99061
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 11
Length of query: 317
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 229
Effective length of database: 1,981,209
Effective search space: 453696861
Effective search space used: 453696861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)