BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62] (317 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 317 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/317 (100%), Positives = 317/317 (100%) Query: 1 MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60 MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI Sbjct: 1 MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60 Query: 61 ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120 ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF Sbjct: 61 ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120 Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI Sbjct: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180 Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES Sbjct: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240 Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH Sbjct: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300 Query: 301 EAEYVKKLRSNAIIHYY 317 EAEYVKKLRSNAIIHYY Sbjct: 301 EAEYVKKLRSNAIIHYY 317 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 30.0 bits (66), Expect = 0.048, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Query: 1 MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI 42 +TS V +L D L T F+++ FCI PI+ SWA+ S I Sbjct: 123 ITSPVLPALLDI--LFTPIFIILSFCIHPILG--SWAILSGI 160 >gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter asiaticus str. psy62] Length = 196 Score = 23.1 bits (48), Expect = 5.7, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Query: 100 NTVNYFFVQHARNTGLSAEDF-SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--MLKY 156 N +N+F V+ RN A++ S L+K+ I +N ++L Q+ P +N F + + Sbjct: 51 NIINHF-VETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRI 109 Query: 157 GNLEMEIPANKQKMKNIT 174 GN+ + K++M +IT Sbjct: 110 GNI---LGFQKEEMVDIT 124 >gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 83 ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142 E ++ + +SGI TV+ V +N A D ++F D + D Y + Sbjct: 142 EGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVL--YSGVSC 199 Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173 I D M+K G + ++ + M+N+ Sbjct: 200 IT------DLMIKEGLINLDFADVRSVMRNM 224 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.377 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,859 Number of Sequences: 1233 Number of extensions: 8547 Number of successful extensions: 24 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 6 length of query: 317 length of database: 328,796 effective HSP length: 74 effective length of query: 243 effective length of database: 237,554 effective search space: 57725622 effective search space used: 57725622 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)