HHsearch alignment for GI: 254780397 and conserved domain: COG1995

>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism].
Probab=100.00  E-value=0  Score=814.35  Aligned_cols=329  Identities=43%  Similarity=0.687  Sum_probs=303.3

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEE-ECCCCHH-CCCCCCCEEEE
Q ss_conf             988883899718987747899999842852324898999939999999999818997447-5386101-11267853761
Q gi|254780397|r    1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY-ETDCKNA-VSIFKKALPII   78 (343)
Q Consensus         1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~-~i~~~~~-~~~~~~~i~i~   78 (343)
T Consensus         1 ~~~-~~iAit~GDPaGIGPEi~~~~~~~~~~~--~~~v~igd~~lL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l   77 (332)
T COG1995           1 MTK-PRIAITMGDPAGIGPELVALALAELPIK--CELVVIGDKALLEAAAALLGLPVFLLEAIPDPYEAFAAGAIDLPDL   77 (332)
T ss_pred             CCC-CCEEECCCCCCCCCHHHHHHHHCCCCCC--CCEEEECCHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCCCCEEEC
T ss_conf             998-8568646886667999999862104677--8769985899999999874665311001466044542147622422


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             03332200135531000002467788776643012343044322344777641013256478999983423588665211
Q gi|254780397|r   79 SSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM  158 (343)
Q Consensus        79 ~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M  158 (343)
T Consensus        78 ~~~~~~~v~~G~~~~~~g~~~~~~l~~A~~~a~~G~~~aivT~PI~K~~l~~AG~~y~GhTe~LA~~s~~~-----~~vM  152 (332)
T COG1995          78 PLPLPAPVEAGQLSAANGAYVFETLKRAVELALAGEVDAIVTAPINKEALNDAGIPYPGHTEFLAELSGTH-----DPVM  152 (332)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CEEE
T ss_conf             45776765688757134089999999999987367346799656478999964899897789999985799-----7179


Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             23322112665304531333432010245678889899999853134567079996366544531000012102445888
Q gi|254780397|r  159 MLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT  238 (343)
Q Consensus       159 ll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~  238 (343)
T Consensus       153 mla~~~Lrv~lvTtHipL~~V~~~iT~e~l~~~~~i~~~~L~~~fGi~~PriaVaGLNPHaGE~G~lG~EE~diI~Paie  232 (332)
T COG1995         153 MLAVPELRVALVTTHIPLKDVPDAITPELLLEVLRILDKDLRKKFGIAEPRIAVAGLNPHAGEGGLLGREEIDIIIPAIE  232 (332)
T ss_pred             EEECCCCEEEEEEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             86146417998750461888776658999999999999999986298876368861489887677777347788899999


Q ss_pred             HHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCH
Q ss_conf             64215876434555112100022366768999851202255554144772799920876475588755222133686683
Q gi|254780397|r  239 YLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQE  318 (343)
Q Consensus       239 ~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~  318 (343)
T Consensus       233 ~aR~~Gi~~~GPlpADT~F~~~~~~~~DavlaMYHDQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAfDiAgkGiA~~  312 (332)
T COG1995         233 EARAEGIDLVGPLPADTLFHPAYLANYDAVLAMYHDQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAFDIAGKGIADP  312 (332)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCC
T ss_conf             99981873348999414420345505787999622664355644223532577338870340687620543304785780


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             8999999999999985200
Q gi|254780397|r  319 ESLVSALKIAAQLGYQKNL  337 (343)
Q Consensus       319 ~s~~~ai~~a~~~~~~~~~  337 (343)
T Consensus       313 ~S~~~Ai~lA~~l~~~~~~  331 (332)
T COG1995         313 GSLIAAIKLAAKLAAKRAN  331 (332)
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             6899999999999863405