HHsearch alignment for GI: 254780397 and conserved domain: TIGR03270
>TIGR03270 methan_mark_4 putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases.
Probab=96.97 E-value=0.016 Score=35.52 Aligned_cols=178 Identities=21% Similarity=0.237 Sum_probs=96.8
Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC--CCCCCCEEEEECCCCCHHHHHH
Q ss_conf 87766430123430443223447776410132564789999834235886652112--3322112665304531333432
Q gi|254780397|r 104 EKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM--LSGPQLRTVPVTIHIPIADICR 181 (343)
Q Consensus 104 ~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml--l~~~~L~V~l~TtHiPLk~V~~ 181 (343)
T Consensus 8 ~~li~~l~~g~~d~~vRGsl~as~~l~~----------Lk~~~g~----~~r~slL~~~~g~~f~lapvgIde------- 66 (202)
T TIGR03270 8 EELIDDLVNGRLDAAVRGSLSSSNTIRE----------LKKALGK----IYRASILETADGRIFLLAPVGIDE------- 66 (202)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHH----------HHHHCCC----EEEEEEEECCCCCEEEECCCCCCC-------
T ss_conf 9999998668656688504428889999----------9973273----574353324789789964652257-------
Q ss_pred HCCHHHHHHHHHHHH---HHHHHHCCCCCCEEEEEEECCCCCCCCCCC-CCCCHH-HHHHHHHHHH--CCCCCC--CCCC
Q ss_conf 010245678889899---999853134567079996366544531000-012102-4458886421--587643--4555
Q gi|254780397|r 182 ILSTKRIIETSDTVY---NAMKKYFGINNPRIAISGLNPHAGENATIG-IEEKNI-IIPAITYLRN--DNKNII--GPLP 252 (343)
Q Consensus 182 ~it~~~I~~ki~~~~---~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G-~EE~~i-I~PaI~~~~~--~g~~v~--GP~p 252 (343)
T Consensus 67 ---~~~~~~K~~Ii~~a~~~~-r~lGi-ePKVAvLS----~grl~d~gr~~~Id~si~d~e~~~~~~~~~~~a~h~gIli 137 (202)
T TIGR03270 67 ---GWTISDKVKIIELASEFL-RRLGR-EPKVAVLS----GGRLGDVGRSPEVDRSIADGELIARLLKDGMEIEHYGILI 137 (202)
T ss_pred ---CCCHHHHHHHHHHHHHHH-HHCCC-CCCEEEEE----CCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHEECCEEE
T ss_conf ---868899999999999999-98099-98559886----4402105767542215875899998630550002432531
Q ss_pred CHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEE----EEEE--CCEEEECCCCCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf 11210002236676899985120225555414477279----9920--87647558875522213368668389999999
Q gi|254780397|r 253 ADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVN----ITLG--LPFVRTSPDHGTAFDIAGSSLTQEESLVSALK 326 (343)
Q Consensus 253 aDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn----~t~G--Lp~irtSpdHGTafdiagk~~a~~~s~~~ai~ 326 (343)
T Consensus 138 E~-----av~~~adiiiaPDg~sGNllfr~l~~l~~~~~~Ga~vlg~~~~~VdTSRa------------~s~e~y~~al~ 200 (202)
T TIGR03270 138 EE-----ALKDGSNVIIAPDGISGNLIFRSLALVGGGRSYGAPVLNDEGVFVDTSRS------------QTAEGYYNALK 200 (202)
T ss_pred EH-----HHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCC------------CCHHHHHHHHH
T ss_conf 05-----44587898981572120299999999748765673012687617976767------------65578877775
Q ss_pred HH
Q ss_conf 99
Q gi|254780397|r 327 IA 328 (343)
Q Consensus 327 ~a 328 (343)
T Consensus 201 lA 202 (202)
T TIGR03270 201 LA 202 (202)
T ss_pred CC
T ss_conf 29