HHsearch alignment for GI: 254780397 and conserved domain: pfam00180

>pfam00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase.
Probab=97.25  E-value=0.00063  Score=43.98  Aligned_cols=140  Identities=14%  Similarity=0.228  Sum_probs=74.5

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf             2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r  181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH  259 (343)
Q Consensus       181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~  259 (343)
T Consensus       157 ~~~Tr~~~~Riar~AF~~A~~r-~-r~-~--Vt~v~KaN----vl~~~-~~~~~~~~e~~~~~yp~I~~~~~~vDa~~~~  226 (349)
T pfam00180       157 KLYSRDEIERIARVAFELARKR-G-RK-K--VTSVDKAN----VLKSS-RLWREIVEEVAKEEYPDVELEHMLVDNAAMQ  226 (349)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHC-C-CC-E--EEEEECCC----CCCHH-HHHHHHHHHHHHHHCCCCCEEEECHHHHHHH
T ss_conf             7567899999999999999866-9-97-2--99973587----43100-6889999999997678851565007699999


Q ss_pred             C--CCCCCCEEEE--EECCH----HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2--2366768999--85120----22555541447727999208764755887552221336866838999999999999
Q gi|254780397|r  260 S--ARQCYDVAIC--MYHDQ----ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL  331 (343)
Q Consensus       260 ~--~~~~~D~vla--mYHDQ----glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~  331 (343)
T Consensus       227 lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGlaps~nig~~-~~a~fEp~HGSApdiaGk~iANP~a~Ils~amML~h  305 (349)
T pfam00180       227 LVKNPKQFDVIVTENLFGDILSDEASMLTGSLGMLPSASLGAS-GFALFEPVHGSAPDIAGKGKANPIATILSAAMMLRH  305 (349)
T ss_pred             HHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             8219666876630662046888888885386323553425897-613563356860543699876949999999999985