Query gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 343 No_of_seqs 216 out of 2390 Neff 6.9 Searched_HMMs 33803 Date Wed Jun 1 12:41:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780397.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ptm_A 4-hydroxythreonine-4-p 100.0 0 0 874.3 28.2 327 1-336 2-329 (329) 2 >1yxo_A 4-hydroxythreonine-4-p 100.0 0 0 866.9 27.2 325 4-336 2-328 (328) 3 >2hi1_A 4-hydroxythreonine-4-p 100.0 0 0 859.8 24.7 325 2-332 4-330 (330) 4 >1vi1_A Fatty acid/phospholipi 98.8 6E-07 1.8E-11 61.7 15.5 273 5-336 3-320 (345) 5 >1hqs_A Isocitrate dehydrogena 97.2 0.00046 1.4E-08 44.4 4.5 83 249-331 282-372 (423) 6 >2d4v_A Isocitrate dehydrogena 97.1 0.0014 4.1E-08 41.5 5.9 146 181-331 199-379 (429) 7 >3flk_A Tartrate dehydrogenase 97.0 0.00077 2.3E-08 43.1 4.4 143 179-331 159-311 (364) 8 >2iv0_A Isocitrate dehydrogena 97.0 0.0015 4.3E-08 41.4 5.7 80 250-331 273-360 (412) 9 >1yco_A Branched-chain phospho 97.0 0.0013 3.8E-08 41.7 5.4 100 182-286 30-140 (152) 10 >2e0c_A 409AA long hypothetica 96.9 0.0022 6.6E-08 40.3 6.0 81 250-332 270-358 (409) 11 >3dms_A Isocitrate dehydrogena 96.9 0.0017 5.1E-08 41.0 5.3 146 181-331 209-376 (427) 12 >1a05_A IPMDH, IMDH, 3-isoprop 96.8 0.0024 7.1E-08 40.1 5.1 136 180-330 159-304 (358) 13 >1tyo_A Isocitrate dehydrogena 96.7 0.004 1.2E-07 38.8 5.8 79 250-330 283-369 (435) 14 >1r5j_A Putative phosphotransa 96.5 0.0069 2E-07 37.4 6.1 107 183-295 31-153 (154) 15 >1cnz_A IPMDH, IMDH, protein ( 96.5 0.0024 7.2E-08 40.1 3.5 138 181-331 165-311 (363) 16 >1x0l_A Homoisocitrate dehydro 96.4 0.0059 1.7E-07 37.8 5.0 140 180-331 138-286 (333) 17 >1w0d_A 3-isopropylmalate dehy 96.4 0.0051 1.5E-07 38.2 4.7 140 181-331 149-298 (337) 18 >2d1c_A Isocitrate dehydrogena 96.4 0.0026 7.7E-08 39.9 3.1 138 181-330 160-306 (370) 19 >1vmi_A Putative phosphate ace 96.3 0.0082 2.4E-07 36.9 5.4 100 183-287 54-165 (178) 20 >2af4_C Phosphate acetyltransf 96.3 0.0077 2.3E-07 37.1 5.1 101 183-288 35-147 (159) 21 >3blx_B Isocitrate dehydrogena 96.2 0.0038 1.1E-07 38.9 3.4 150 171-331 145-308 (354) 22 >1v53_A 3-isopropylmalate dehy 96.2 0.0049 1.4E-07 38.3 3.7 139 181-333 160-308 (366) 23 >1g2u_A IPMDH, 3-isopropylmala 96.1 0.0045 1.3E-07 38.5 3.3 136 181-331 155-300 (345) 24 >3blx_A Isocitrate dehydrogena 96.1 0.0045 1.3E-07 38.5 3.1 140 181-331 152-301 (349) 25 >2qfy_A Isocitrate dehydrogena 96.1 0.0032 9.5E-08 39.4 2.4 83 249-331 216-311 (380) 26 >1td9_A Phosphate acetyltransf 96.0 0.015 4.4E-07 35.4 5.3 108 182-295 28-151 (152) 27 >1u7n_A Fatty acid/phospholipi 95.8 0.011 3.3E-07 36.1 4.3 104 2-131 1-110 (173) 28 >1vlc_A 3-isopropylmalate dehy 95.8 0.007 2.1E-07 37.3 3.0 135 181-330 169-312 (366) 29 >1wpw_A 3-isopropylmalate dehy 95.7 0.016 4.6E-07 35.2 4.6 139 181-333 139-285 (336) 30 >1td9_A Phosphate acetyltransf 95.5 0.018 5.5E-07 34.8 4.3 125 3-137 21-147 (177) 31 >1r5j_A Putative phosphotransa 95.4 0.015 4.5E-07 35.3 3.6 119 3-131 23-143 (183) 32 >1vmi_A Putative phosphate ace 95.4 0.022 6.5E-07 34.3 4.3 120 4-133 3-124 (177) 33 >2af4_C Phosphate acetyltransf 94.5 0.016 4.6E-07 35.2 1.7 113 4-126 16-128 (174) 34 >2uxq_A Isocitrate dehydrogena 93.9 0.028 8.3E-07 33.7 2.0 143 182-332 136-295 (358) 35 >1lwd_A Isocitrate dehydrogena 93.7 0.064 1.9E-06 31.5 3.5 141 181-332 137-298 (368) 36 >1zor_A Isocitrate dehydrogena 91.5 0.16 4.7E-06 29.2 3.0 90 231-331 55-158 (221) 37 >1u7n_A Fatty acid/phospholipi 90.8 0.83 2.5E-05 24.9 6.2 77 183-270 31-108 (109) 38 >1cnz_A IPMDH, IMDH, protein ( 86.3 0.39 1.1E-05 26.9 1.9 24 1-26 1-24 (363) 39 >2qv7_A Diacylglycerol kinase 61.8 8.1 0.00024 18.9 3.2 63 207-275 23-91 (140) 40 >1ddw_A GLGF-domain protein ho 56.8 4.5 0.00013 20.5 1.2 71 265-335 30-113 (120) 41 >3cg4_A Response regulator rec 50.9 11 0.00031 18.2 2.3 99 238-336 25-132 (142) 42 >1vkz_A Phosphoribosylamine--g 49.5 6.3 0.00019 19.6 1.0 39 102-148 58-96 (321) 43 >1yco_A Branched-chain phospho 46.0 21 0.00062 16.4 5.0 84 4-131 1-86 (127) 44 >3ehd_A Uncharacterized conser 42.5 6.5 0.00019 19.5 0.2 80 223-304 12-107 (162) 45 >2bon_A Lipid kinase; DAG kina 38.1 18 0.00054 16.8 1.9 62 206-274 28-92 (165) 46 >2jba_A Phosphate regulon tran 35.0 24 0.0007 16.1 2.1 71 239-309 21-91 (127) 47 >2oa9_A R.MVAI; monomeric endo 28.7 12 0.00035 17.9 -0.3 11 301-311 65-75 (79) 48 >1rzu_A Glycogen synthase 1; g 27.5 20 0.0006 16.5 0.7 96 242-339 86-189 (200) 49 >3gk0_A PNP synthase, pyridoxi 26.8 32 0.00094 15.3 1.6 35 110-144 111-146 (278) 50 >1m5w_A Pyridoxal phosphate bi 25.7 36 0.0011 15.1 1.7 34 111-144 84-118 (243) 51 >1s28_A ORF1; type III chapero 25.4 46 0.0014 14.4 4.7 67 138-205 65-131 (132) 52 >3cx5_E Cytochrome B-C1 comple 24.8 9.1 0.00027 18.6 -1.5 20 301-320 17-36 (37) 53 >2qzs_A Glycogen synthase; gly 22.0 54 0.0016 14.0 4.5 137 184-338 44-189 (201) 54 >2o3j_A UDP-glucose 6-dehydrog 21.9 54 0.0016 14.0 4.8 71 205-285 21-118 (169) 55 >1p8a_A Protein tyrosine phosp 21.7 42 0.0013 14.6 1.4 76 223-302 39-118 (146) 56 >3g79_A NDP-N-acetyl-D-galacto 21.4 55 0.0016 13.9 7.5 96 174-275 92-199 (251) 57 >2f62_A Nucleoside 2-deoxyribo 21.2 13 0.00038 17.7 -1.3 94 206-311 8-115 (161) 58 >3gl9_A Response regulator; be 21.0 17 0.00049 17.0 -0.8 15 115-129 99-113 (122) 59 >2z1a_A 5'-nucleotidase; metal 20.7 57 0.0017 13.8 4.1 63 207-270 163-236 (327) No 1 >>1ptm_A 4-hydroxythreonine-4-phosphate dehydrogenase; crystal strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis, PLP; 1.96A {Escherichia coli} (A:) Probab=100.00 E-value=0 Score=874.31 Aligned_cols=327 Identities=32% Similarity=0.533 Sum_probs=316.3 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCC-CCCEEEEC Q ss_conf 98888389971898774789999984285232489899993999999999981899744753861011126-78537610 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIF-KKALPIIS 79 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~-~~~i~i~~ 79 (343) |++ ++|+||+|||+||||||++|+|++. +.|++|+|||.++|+++++.++++++++.++..++.+.. .+.+++++ T Consensus 2 M~k-~~IaIT~GDPaGIGPEIi~kal~~~---~~~~~viiGd~~vl~~~~~~lg~~~~~~~i~~~~~~~~~~~~~i~v~~ 77 (329) T 1ptm_A 2 VKT-QRVVITPGEPAGIGPDLVVQLAQRE---WPVELVVCADATLLTNRAAXLGLPLTLRPYSPNSPAQPQTAGTLTLLP 77 (329) T ss_dssp CCC-CEEEEECCSTTSSHHHHHHHHTTSC---CSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEE T ss_pred CCC-CEEEEECCCCCHHHHHHHHHHHHCC---CCCCEEEEECHHHHHHHHHHCCCCCEEEECCCCCHHCCCCCCCEEEEC T ss_conf 989-8599973785073799999998217---899879998999999999984999627885884110314478037621 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 33322001355310000024677887766430123430443223447776410132564789999834235886652112 Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343) Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343) .+...++++|++|+++|+++++|+++|+++|++|++|||||+||||++|+.+|++|+||||||+++++.+ +++|| T Consensus 78 ~~~~~~i~~G~~s~~~G~aa~~~i~~A~~~~~~g~~daiVT~PI~K~a~~~aG~~f~GHTE~la~~~~~~-----~~~mm 152 (329) T 1ptm_A 78 VALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAK-----KVVXX 152 (329) T ss_dssp CCCSSCCBTTBCCTTHHHHHHHHHHHHHHHHHHTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCS-----CCEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHCCCCC-----CCEEE T ss_conf 2134676767651346999999999999998438643798477357778855887477106655301578-----72245 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886 Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343) Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343) |.+++|||+++|+||||++|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++ T Consensus 153 l~~~~Lrv~l~T~HipL~~V~~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGe~G~~G~EE~~ii~Pai~~ 232 (329) T 1ptm_A 153 LATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHXGTEEIDTIIPVLNE 232 (329) T ss_dssp EESSSCEEEESSCSSCGGGHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGGGTTCSHHHHTHHHHHHH T ss_pred EEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 55257489995444778999998769999999999999999852998871799614898532466651336659999999 Q ss_pred HHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH Q ss_conf 42158764345551121000223667689998512022555541447727999208764755887552221336866838 Q gi|254780397|r 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343) Q Consensus 240 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343) +|++|++++||+||||+|.+..+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++ T Consensus 233 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfdIAGkg~A~~~ 312 (329) T 1ptm_A 233 LRAQGXKLNGPLPADTLFQPKYLDNADAVLAXYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVG 312 (329) T ss_dssp HHHTTCEEEEEECHHHHSSHHHHTTCSEEEESSHHHHHHHHHTTCSSSCEEEEESSSSEEEECSSCCCGGGTTSSCCCCH T ss_pred HHHCCCCCCCCCCCCHHHHHHCCCCCCEEEECCHHCCCHHHHEECCCCCEEEECCCCEEEECCCCCCHHHHCCCCCCCHH T ss_conf 98769877899894155654202589889971410044032010467527995489955778998616665078889869 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999998520 Q gi|254780397|r 320 SLVSALKIAAQLGYQKN 336 (343) Q Consensus 320 s~~~ai~~a~~~~~~~~ 336 (343) ||++||++|++|++||+ T Consensus 313 S~~~Ai~lA~~la~~r~ 329 (329) T 1ptm_A 313 SFITALNLAIKXIVNTQ 329 (329) T ss_dssp HHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999986279 No 2 >>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} (A:) Probab=100.00 E-value=0 Score=866.92 Aligned_cols=325 Identities=35% Similarity=0.553 Sum_probs=312.5 Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCC--CCEEEECCC Q ss_conf 883899718987747899999842852324898999939999999999818997447538610111267--853761033 Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFK--KALPIISSP 81 (343) Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~--~~i~i~~~~ 81 (343) +++|+||+|||+||||||++|+|++. +.|++|+|||+++|+++++.+++++++..++..++..... ..+++++.. T Consensus 2 K~~iaIT~GDpaGIGpEIi~kal~~~---~~~~~viiGd~~vL~~~~~~lg~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 78 (328) T 1yxo_A 2 SLRFALTPGEPAGIGPDLCLLLARSA---QPHPLIAIASRTLLQERAGQLGLAIDLKDVSPAAWPERPAKAGQLYVWDTP 78 (328) T ss_dssp CCCEEEECCSTTSSHHHHHHHHTTSC---CSSCEEEEECHHHHHHHHHHHTCCCEEEECBTTBCCSSCCCTTEEEEEECC T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCEEEEECCC T ss_conf 96399988986164899999999727---999989998999999999984999743466834544431256602431244 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 32200135531000002467788776643012343044322344777641013256478999983423588665211233 Q gi|254780397|r 82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLS 161 (343) Q Consensus 82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~ 161 (343) ...++++|++|+++|+++++||++|+++|++|++|||||+||||++|+.+|++|+|||||||++++.+ +++|||+ T Consensus 79 ~~~~i~~G~~s~~sG~aa~~~i~~Av~~~~~g~~dalVT~PInK~al~~aG~~~~GHTE~la~~~~~~-----~~~mml~ 153 (328) T 1yxo_A 79 LAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGXITAPVHKGVINEAGIPFSGHTEFLADLTHTA-----QVVXXLA 153 (328) T ss_dssp CSSCCCTTCCCGGGHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCS-----CCEEEEE T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCC-----CHHHHHH T ss_conf 22234667530777789999999999887518755312572205889855997376008877763354-----2377765 Q ss_pred CCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 22112665304531333432010245678889899999853134567079996366544531000012102445888642 Q gi|254780397|r 162 GPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR 241 (343) Q Consensus 162 ~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~ 241 (343) +++|||+++|+|||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++++ T Consensus 154 ~~~LrV~l~T~HipL~~v~~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGe~G~~G~EE~~iI~PAi~~~~ 233 (328) T 1yxo_A 154 TRGLRVALATTHLPLREVADAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLR 233 (328) T ss_dssp ETTEEEEESSCSCCHHHHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHHHHH T ss_pred HHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 53504567875104767776641467789999999999985298643124521372002357886407999999999998 Q ss_pred HCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH Q ss_conf 15876434555112100022366768999851202255554144772799920876475588755222133686683899 Q gi|254780397|r 242 NDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343) Q Consensus 242 ~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343) ++|++++||+||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++|| T Consensus 234 ~~gi~~~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l~f~~~VnvTlGLP~iRtS~DHGTAfDIAGkg~A~~~S~ 313 (328) T 1yxo_A 234 GEGLDLIGPLPADTLFTPKHLEHCDAVLAXYHDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDLAGSGRIDSGSL 313 (328) T ss_dssp TTTCEEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGGGTTTCCCCCHHH T ss_pred HCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHCCCCCCCHHHH T ss_conf 65965457778255655300233337999600002335553146763799469983473699764365537898997999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999998520 Q gi|254780397|r 322 VSALKIAAQLGYQKN 336 (343) Q Consensus 322 ~~ai~~a~~~~~~~~ 336 (343) ++|+++|++|++||. T Consensus 314 ~~Ai~~A~~~~~~r~ 328 (328) T 1yxo_A 314 QVALETAYQXAASRC 328 (328) T ss_dssp HHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999997059 No 3 >>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} (A:) Probab=100.00 E-value=0 Score=859.78 Aligned_cols=325 Identities=35% Similarity=0.546 Sum_probs=315.7 Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCC Q ss_conf 88883899718987747899999842852324898999939999999999818997447538610111267853761033 Q gi|254780397|r 2 DEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSP 81 (343) Q Consensus 2 ~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~ 81 (343) +++++|+||+|||+||||||++|+|++....+.+.+|++|+..+++++++.++.+++++.++..++.+...+.+++++.. T Consensus 4 ~~~~~iaIT~GDPaGIGPEIi~kala~~~~~~~~~~vi~g~~~~l~~~~~~~g~~~~~~~i~~~~~~~~~~g~i~vi~~~ 83 (330) T 2hi1_A 4 XETKTVAITXGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVIDEP 83 (330) T ss_dssp -CCCCEEEECCCTTTTHHHHHHHHHTSTTTTTCSEEEEECHHHHHHHHHTTSSCCCEEEEESSGGGCCCCTTEEEEEECC T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCEECCCCCC T ss_conf 89990899889850738999999996735048998999789999999997699995254347666641344212023454 Q ss_pred C--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 3--22001355310000024677887766430123430443223447776410132564789999834235886652112 Q gi|254780397|r 82 C--GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343) Q Consensus 82 ~--~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343) . ..++++|++|+++|+++++||++|+++|++|+++||||+||||++|+.+|++|+||||||+++++.+ +++|| T Consensus 84 ~~~~~~i~~G~~s~~~G~aa~~~i~~A~~~~~~g~~~alVTaPI~K~al~~aG~~f~GhTe~La~~~~~~-----~~~mm 158 (330) T 2hi1_A 84 LAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSR-----DYAXV 158 (330) T ss_dssp CSCGGGCCTTSCCHHHHHHHHHHHHHHHHHHHTTSCSEEEECCCCHHHHHHTTCCCSSHHHHHHHHTTCC-----CCEEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC-----CHHHH T ss_conf 2123432222211012378999999988852013221102586302367662887335999999873278-----54665 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886 Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343) Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343) |++++|||+++|+|+|||+|++.||+++|.+++++++++|++ ||+.+||||||||||||||+|+||+||+++|.|||++ T Consensus 159 l~~~~LrV~l~T~HipL~~v~~~it~~~i~~~i~~~~~~l~~-~gi~~PrIaV~GLNPHAGe~G~~G~EE~~iI~Pai~~ 237 (330) T 2hi1_A 159 LYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITD 237 (330) T ss_dssp EECSSCEEEESCCSSCHHHHHHHCCHHHHHHHHHHHHHHHHH-TTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHH T ss_pred HHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 432133246655224478898754167788889999988653-0045882478751676321231225778889999999 Q ss_pred HHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH Q ss_conf 42158764345551121000223667689998512022555541447727999208764755887552221336866838 Q gi|254780397|r 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343) Q Consensus 240 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343) +|++|++++||+||||+|.+..+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++ T Consensus 238 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l~f~~~VnvtlGLP~iRTS~DHGTAfDIAGkg~A~~~ 317 (330) T 2hi1_A 238 ARAKGXDVYGPCPPDTVFLQAYEGQYDXVVAXYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSE 317 (330) T ss_dssp HHTTTCEEEEEECHHHHHHHHHTTSCSEEEESSHHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTTTTTTTCCCCH T ss_pred HHHCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCEECCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHH T ss_conf 99639976799286222430234548889995245434000121467667996599934768997426655068988859 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780397|r 320 SLVSALKIAAQLG 332 (343) Q Consensus 320 s~~~ai~~a~~~~ 332 (343) ||++||++|++|| T Consensus 318 s~~~Ai~lA~~lA 330 (330) T 2hi1_A 318 SXAVSIKLAXQLA 330 (330) T ss_dssp HHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999859 No 4 >>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} (A:) Probab=98.81 E-value=6e-07 Score=61.73 Aligned_cols=273 Identities=12% Similarity=0.133 Sum_probs=153.1 Q ss_pred CCEEE-ECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC Q ss_conf 83899-71898774789999984285232489899993999999999981899744753861011126785376103332 Q gi|254780397|r 5 LPLIL-TQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343) Q Consensus 5 ~pI~I-T~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343) ++|++ .||-..|-.+.+ +++.....-.....++++|+++.++...+.++.++....+. +....... T Consensus 3 ~rIa~~~~g~deg~d~~v-l~A~~~~~~~~~~~~iLvG~~~~I~~~l~~~~~~~~~~~~~--~~~~~~~~---------- 69 (345) T 1vi1_A 3 LRIAVDAXGGDHAPKAVI-DGVIKGIEAFDDLHITLVGDKTTIESHLTTTSDRITVLHAD--EVIEPTDE---------- 69 (345) T ss_dssp EEEEEESSCSSSTTHHHH-HHHHHHHHHCTTEEEEEEECHHHHHTTCCSCCTTEEEEECC--BCCCTTSC---------- T ss_pred EEEEEECCCCCCCCHHHH-HHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCEEEECCC--CCCCCCCC---------- T ss_conf 299998048855818899-99999998788986999948999999984370563898587--62058865---------- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC-C-CC Q ss_conf 200135531000002467788776643012343044322344777641013256478999983423588665211-2-33 Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM-M-LS 161 (343) Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M-l-l~ 161 (343) +...--+.--+++..|+.++++|++|++|+|=.....+..+-..- +...+...-..| + +. T Consensus 70 -------~~~a~r~~~~~s~~~a~~lv~~G~aD~~vsg~~t~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~ 131 (345) T 1vi1_A 70 -------PVRAVRRKKNSSXVLXAQEVAENRADACISAGNTGALXTAGLFIV-----------GRIKGIDRPALAPTLPT 131 (345) T ss_dssp -------HHHHHHHCTTBHHHHHHHHHHTTSCSEEEECSCHHHHHHHHHHTT-----------CBCTTCSSCEEECEECC T ss_pred -------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH-----------HHHCCCCCCCEEEECCC T ss_conf -------578988511028999999863146564774467177899998877-----------53135533420022667 Q ss_pred CCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 22112665304531333432010245678889899999853134567079996366544531000012102445888642 Q gi|254780397|r 162 GPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR 241 (343) Q Consensus 162 ~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~ 241 (343) .++=.+.++-+++-. .-+.+.+.+-...-....++.||+++||+|++.. || -.++..+.+.-|.+.++ T Consensus 132 ~~~~~~~l~D~g~n~-----~p~~~~l~~iA~~~a~~~~~~lGie~PkValLs~----g~---~~~~~~~~~~eA~~ll~ 199 (345) T 1vi1_A 132 VSGDGFLLLDVGANV-----DAKPEHLVQYAIXGSVYSQQVRGVTSPRVGLLNV----GT---EDKKGNELTKQTFQILK 199 (345) T ss_dssp SSSCCEEEECSSSCS-----SCCHHHHHHHHHHHHHHHHHTSCCSSCEEEEEES----SS---STTCSCHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCC-----CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC----CC---CCCCCCHHHHHHHHHHH T ss_conf 789960798278676-----7880899999999999999955976522787404----45---57762278999998753 Q ss_pred HC-CCCCCCCCCCHHHEECCCCCCCCEEEE--------------------------------EECCHHHHHHHHHCC--- Q ss_conf 15-876434555112100022366768999--------------------------------851202255554144--- Q gi|254780397|r 242 ND-NKNIIGPLPADSMFHHSARQCYDVAIC--------------------------------MYHDQALIPIKTLDF--- 285 (343) Q Consensus 242 ~~-g~~v~GP~paDt~F~~~~~~~~D~vla--------------------------------mYHDQglip~K~l~f--- 285 (343) +. .+++.|..-.|.+|.. +.|++++ -==|.|.+-.|++.+ T Consensus 200 ~~~~~~~~G~ie~~~~l~~----~~~v~v~dg~~~n~~~k~~eG~a~~l~~~lk~~~~~~i~p~l~a~ni~~kl~~~~~~ 275 (345) T 1vi1_A 200 ETANINFIGNVEARDLLDD----VADVVVTDGFTGNVTLKTLEGSALSIFKXXRDVXTSTLTSKLAAAVLKPKLKEXKXK 275 (345) T ss_dssp SCTTSEEEEEEEGGGGGGT----SCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCHHHHHHHHHH T ss_pred HCCCCCEEEEECCCEECCC----CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 2378434775035420389----457999743112389987654788999999988611046678888878999999974 Q ss_pred -CC---EEEEEEEC--CEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf -77---27999208--76475588755222133686683899999999999998520 Q gi|254780397|r 286 -NQ---TVNITLGL--PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 (343) Q Consensus 286 -~~---~Vn~t~GL--p~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~ 336 (343) +. +-.+-+|+ |++-+| +-++..++.+++.+|..+++++- T Consensus 276 ~~~~~~~G~illG~~~pv~~~s------------r~s~~~~i~~~i~~a~~~a~~~~ 320 (345) T 1vi1_A 276 XEYSNYGGASLFGLKAPVIKAH------------GSSDSNAVFRAIRQAREXVSQNV 320 (345) T ss_dssp HCGGGSCCEEEETBSSCEEECC------------TTCCHHHHHHHHHHHHHHHHTTH T ss_pred CCCCCCCCEEEECCCCCEEEEC------------CCCCHHHHHHHHHHHHHHHHHHH T ss_conf 6933029778972683289947------------99998999999999999998668 No 5 >>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} (A:) Probab=97.20 E-value=0.00046 Score=44.41 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=62.4 Q ss_pred CCCCCHHHEECCC--CCCCCEEEE------EECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH Q ss_conf 4555112100022--366768999------85120225555414477279992087647558875522213368668389 Q gi|254780397|r 249 GPLPADSMFHHSA--RQCYDVAIC------MYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343) Q Consensus 249 GP~paDt~F~~~~--~~~~D~vla------mYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343) -..-.|++...-. -..||++|+ .-.|.+..-+-.++.-.+.|+--.=-+.---|-||||.||||+++|||.+ T Consensus 282 ~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDILSD~~a~l~GslG~~ps~nig~~~~~a~fE~~HGsapdiaG~~~aNP~a 361 (423) T 1hqs_A 282 KDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLDKVNPSS 361 (423) T ss_dssp EEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTCCEEEEESCCCCGGGTTTTCSCCHH T ss_pred EHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCHHH T ss_conf 14669999999832966663685445047788888887527876531212478755178417888604436998648499 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780397|r 321 LVSALKIAAQL 331 (343) Q Consensus 321 ~~~ai~~a~~~ 331 (343) ++-|.-+.++- T Consensus 362 ~Ils~ammL~h 372 (423) T 1hqs_A 362 VILSGVLLLEH 372 (423) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 6 >>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} (A:) Probab=97.07 E-value=0.0014 Score=41.51 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=86.1 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCC---C----------------------CCHHHH Q ss_conf 201024567888989999985313456707999-63665445310000---1----------------------210244 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGI---E----------------------EKNIII 234 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~---E----------------------E~~iI~ 234 (343) +.+|++.+.+-++...+.-++. + +.++-+. ==|=..==.|+|=+ | ..+... T Consensus 199 ~~~tr~~~~Ri~~~Af~~A~~~-~--r~~Vt~v~KaNv~k~tdGlf~~~~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (429) T 2d4v_A 199 KPVSTEGSERLIRRTIQYALEH-G--KPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAG 275 (429) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-T--CSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHHHHHHHHCHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHC-C--CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC T ss_conf 9863477899999999999974-9--981689935531001042799999999887604567553112221000121234 Q ss_pred HHHHHHHHCCCCC-CCCCCCHHHEECCC--CCCCCEEEE------EECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCC Q ss_conf 5888642158764-34555112100022--366768999------85120225555414477279992087647558875 Q gi|254780397|r 235 PAITYLRNDNKNI-IGPLPADSMFHHSA--RQCYDVAIC------MYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHG 305 (343) Q Consensus 235 PaI~~~~~~g~~v-~GP~paDt~F~~~~--~~~~D~vla------mYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHG 305 (343) -+.++.-++--+| .-..=.|++...-. -..||++|+ +-.|++..-.-.+++-.+.|+ |-..----|-|| T Consensus 276 e~~~~~a~eyp~I~~~~~~vDa~~~~Lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GslG~apsani--g~~~a~FEp~HG 353 (429) T 2d4v_A 276 QKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANL--SDTHAIFEATHG 353 (429) T ss_dssp HHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEE--CSSCEEEECSCC T ss_pred CCCEECCCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCHHHHHHHCCCCCCCCCCC--CCCCEEEECCCC T ss_conf 310001346653353578999999999653102564413045543221366664146553344221--698769878988 Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 52221336866838999999999999 Q gi|254780397|r 306 TAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 306 Tafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) ||.||||||+|||.+|+-|.-+-++- T Consensus 354 sApdiaG~~~ANP~a~ils~amML~~ 379 (429) T 2d4v_A 354 TAPDIAGQGKANPSSLILSAVMMLEH 379 (429) T ss_dssp CCTTTTTTTCCCCHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 74111799965929999999999998 No 7 >>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* (A:) Probab=97.05 E-value=0.00077 Score=43.06 Aligned_cols=143 Identities=11% Similarity=0.082 Sum_probs=92.5 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHE Q ss_conf 4320102456788898999998531345670799963665445310000121024458886421587643-455511210 Q gi|254780397|r 179 ICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMF 257 (343) Q Consensus 179 V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F 257 (343) -.+.+|++.+.+-++...+.-++. + |--|....-.. +-..-.-+..-+.++..++..+|. -..-.|++- T Consensus 159 ~~~~~t~~~~~ria~~Af~~A~~~-~----rk~vt~v~Kan-----v~~~~~g~f~~~~~~~a~~yp~i~~~~~~vD~~~ 228 (364) T 3flk_A 159 QESIFTRRGVDRILKYAFDLAEKR-E----RKHVTSATKSN-----GXAISXPYWDKRTEAXAAHYPHVSWDKQHIDILC 228 (364) T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHS-S----SCEEEEEECTT-----TSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHH T ss_pred EEEEEEHHHHHHHHHHHHHHHHHH-C----CCCEEEEECCC-----CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 653455999999999999999986-8----99678875376-----4100053788888876213785312020288999 Q ss_pred ECCC--CCCCCEEEE------EECCHHHHHHHHHCCCCEEEEEE-ECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHH Q ss_conf 0022--366768999------85120225555414477279992-08764755887552221336866838999999999 Q gi|254780397|r 258 HHSA--RQCYDVAIC------MYHDQALIPIKTLDFNQTVNITL-GLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIA 328 (343) Q Consensus 258 ~~~~--~~~~D~vla------mYHDQglip~K~l~f~~~Vn~t~-GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a 328 (343) .+-. -.+||++++ .-.|++..-+-.+++--++|+.- |=.+----|-||||.|||||++|||.+++-|.-+. T Consensus 229 ~~Lv~~P~~fdViv~~Nl~GDilSD~aa~l~GslG~~~s~ni~~dG~~~a~fE~~HGsapdiag~~~aNP~a~Ils~a~m 308 (364) T 3flk_A 229 ARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAXIWSGALX 308 (364) T ss_dssp HHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHH T ss_pred HHHHCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHH T ss_conf 98726943216102672478899999998727633466454676644403424667775775799850959999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780397|r 329 AQL 331 (343) Q Consensus 329 ~~~ 331 (343) ++. T Consensus 309 L~~ 311 (364) T 3flk_A 309 LEF 311 (364) T ss_dssp HHH T ss_pred HHH T ss_conf 998 No 8 >>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} (A:) Probab=97.03 E-value=0.0015 Score=41.39 Aligned_cols=80 Identities=25% Similarity=0.244 Sum_probs=59.1 Q ss_pred CCCCHHHEECC--CCCCCCEEEE--E----ECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH Q ss_conf 55511210002--2366768999--8----51202255554144772799920876475588755222133686683899 Q gi|254780397|r 250 PLPADSMFHHS--ARQCYDVAIC--M----YHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343) Q Consensus 250 P~paDt~F~~~--~~~~~D~vla--m----YHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343) ..-.|++-..- +-..||++|+ | --|.+..-.-.+++--+.|+ |-..----|-||||.||||||+|||.++ T Consensus 273 ~~~vDa~~~~lv~~P~~fdViv~~Nl~GDILSD~~a~l~G~lG~~ps~ni--g~~~a~fEp~HGsapdiaG~~~aNP~a~ 350 (412) T 2iv0_A 273 DRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNI--GDGIGVFEPVHGSAPKYAGQNKVNPTAE 350 (412) T ss_dssp EEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEE--ETTEEEEEESSCCCSTTTTSSCSCCHHH T ss_pred EHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCEEEECCCCCHHHHCCCCCCCCHHH T ss_conf 34688999887633556765512267765432676664245445666557--8874352135685244378987693999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780397|r 322 VSALKIAAQL 331 (343) Q Consensus 322 ~~ai~~a~~~ 331 (343) +-|.-+.++- T Consensus 351 Ils~ammL~~ 360 (412) T 2iv0_A 351 ILTGALMFEY 360 (412) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999998 No 9 >>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} (A:95-246) Probab=97.03 E-value=0.0013 Score=41.74 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=73.6 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCHHHEECC Q ss_conf 0102456788898999998531345670799963665445310000121024458886421-587643455511210002 Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN-DNKNIIGPLPADSMFHHS 260 (343) Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~-~g~~v~GP~paDt~F~~~ 260 (343) .-|.+.+.+-+.......+ .||+++||+|+++. +|.|.--.+..+.+.-|.+.+++ ..+.++||+.+|.++.+. T Consensus 30 ~p~~~~l~~ia~~a~~~~~-~lg~~~PrVAlLs~----s~~g~~~~~~~~~~~~a~~~l~~~~~~~~~G~i~~d~al~~~ 104 (152) T 1yco_A 30 APTQATLIEIVENAKEVAQ-KLGLHHPKIALLSA----AENFNPKMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEE 104 (152) T ss_dssp SCCHHHHHHHHHHHHHHHH-HTTCSSCEEEEECS----CSSCCTTCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHHCHH T ss_pred CCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf 7569999999999999999-84883402046630----256788752257789999863000244311431001100055 Q ss_pred C----------CCCCCEEEEEECCHHHHHHHHHCCC Q ss_conf 2----------3667689998512022555541447 Q gi|254780397|r 261 A----------RQCYDVAICMYHDQALIPIKTLDFN 286 (343) Q Consensus 261 ~----------~~~~D~vlamYHDQglip~K~l~f~ 286 (343) . .++.|++|+-==|-|-+-+|++..- T Consensus 105 ~~~~k~~~s~~~G~advlI~Pd~~sgNi~~K~~~~~ 140 (152) T 1yco_A 105 AVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLF 140 (152) T ss_dssp HHHHTTCCSSCSSCCSEEECSSHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCCCCCHHEEECHHHHHHHHHHHHHHC T ss_conf 554321477544642000002687889999999970 No 10 >>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* (A:) Probab=96.93 E-value=0.0022 Score=40.31 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=60.4 Q ss_pred CCCCHHHEECCCC--CCCCEEEEE------ECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH Q ss_conf 5551121000223--667689998------51202255554144772799920876475588755222133686683899 Q gi|254780397|r 250 PLPADSMFHHSAR--QCYDVAICM------YHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343) Q Consensus 250 P~paDt~F~~~~~--~~~D~vlam------YHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343) ..-.|++...-.+ ..||++|+- -.|.+-.-+-.++.--+.|+. =..----|-||||.||||+|+|||.+| T Consensus 270 ~~~vDa~~~~li~~P~~fdVivt~Nl~GDIlSD~aa~l~GglG~~psanig--~~~a~FEp~HGsapdiaG~~~aNP~a~ 347 (409) T 2e0c_A 270 DRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIG--DEGGMFEAIHGTAPKYAGKNVANPTGI 347 (409) T ss_dssp EEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEE--TTEEEEEESSCCCGGGTTTTCSCTHHH T ss_pred EHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCC--CCCEEEECCCCCHHHHCCCCCCCCHHH T ss_conf 266789999997574457633122465553002555654265432234678--631032044574255469987592999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780397|r 322 VSALKIAAQLG 332 (343) Q Consensus 322 ~~ai~~a~~~~ 332 (343) +-|.-+.++-. T Consensus 348 Ils~ammL~hl 358 (409) T 2e0c_A 348 IKAGELMLRWM 358 (409) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHC T ss_conf 99999999987 No 11 >>3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A 1cw1_A* ... (A:) Probab=96.91 E-value=0.0017 Score=40.96 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=84.1 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH-------------HHHCCCCC Q ss_conf 20102456788898999998531345670799963665445310000121024458886-------------42158764 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY-------------LRNDNKNI 247 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~-------------~~~~g~~v 247 (343) +.+|++.+.+-++...+.-++. + ++.-..|.==|=..--.|+|- |.-+.....--. ..++.-+| T Consensus 209 ~~~tr~~~~Ri~~~Af~~A~~~-~-rk~vt~v~Kanv~~~~dg~f~-~~~~e~a~~~~~~~~~~~~~~~~~~v~~~yP~I 285 (427) T 3dms_A 209 KPVSKEGTERLVRKAIQYAIDN-D-RKSVTLVHKGNIMKFTEGAFR-DAGYALAQKEFGAELIDGGPWMKFKNPKTGNEI 285 (427) T ss_dssp CCCCHHHHHHHHHHHHHHHHHT-T-CSEEEEEECTTTSTTTHHHHH-HHHHHHHHHHHCCEESTTSSCEEEECTTTCCEE T ss_pred EECCHHHHHHHHHHHHHHHHHC-C-CCCEEEEECCCCEEHHHHHHH-HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCE T ss_conf 7604788899999999999966-9-984799837840012243899-999999999876764033202330366777865 Q ss_pred -CCCCCCHHHEEC--CCCCCCCEEEE--E----ECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCH Q ss_conf -345551121000--22366768999--8----51202255554144772799920876475588755222133686683 Q gi|254780397|r 248 -IGPLPADSMFHH--SARQCYDVAIC--M----YHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQE 318 (343) Q Consensus 248 -~GP~paDt~F~~--~~~~~~D~vla--m----YHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~ 318 (343) .-..-.|++=.+ .+=..||++|+ | -.|.+..-.-.+++--+.|+ |.-.----|-||+|.|||||++||| T Consensus 286 ~~~~~~vDa~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GslG~~~s~ni--g~~~a~FEp~HGsApdiaG~~~aNP 363 (427) T 3dms_A 286 VVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANL--SDSVAMFEATHGTAPKYAGKDYVNP 363 (427) T ss_dssp EEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEE--CSSCEEEEECSCCCGGGTTSSCSCC T ss_pred EEEEHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEE--CCCCEEEECCCCCHHHHCCCCCCCC T ss_conf 87536999999998329564657975416788998999986388565661221--7986688789887255479987692 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8999999999999 Q gi|254780397|r 319 ESLVSALKIAAQL 331 (343) Q Consensus 319 ~s~~~ai~~a~~~ 331 (343) .+|+-|.-+-++- T Consensus 364 ~A~Ils~amML~h 376 (427) T 3dms_A 364 GSEILSAEMMLRH 376 (427) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999998 No 12 >>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Thiobacillus ferrooxidans} (A:) Probab=96.78 E-value=0.0024 Score=40.11 Aligned_cols=136 Identities=14% Similarity=0.157 Sum_probs=81.1 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCHHHE Q ss_conf 3201024567888989999985313456707999636-654453100001210244588864215-87643455511210 Q gi|254780397|r 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLN-PHAGENATIGIEEKNIIIPAITYLRND-NKNIIGPLPADSMF 257 (343) Q Consensus 180 ~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLN-PHAGE~G~~G~EE~~iI~PaI~~~~~~-g~~v~GP~paDt~F 257 (343) .+.+|++.+.+-++...+.-++. +++...|-==| .|.+ .-+-.-+.+.+++. ++. .-..-.|++- T Consensus 159 ~~~~tr~~~~ri~r~Af~~A~~~---~~kvt~v~K~nv~~~~---------~~~~~~~~~~~~~~p~i~-~~~~~vD~~~ 225 (358) T 1a05_A 159 TMVYDEDEIRRIAHVAFRAAQGR---RKQLCSVDKANVLETT---------RLWREVVTEVARDYPDVR-LSHMYVDNAA 225 (358) T ss_dssp EEEEEHHHHHHHHHHHHHHHHTT---TSEEEEEECTTTCHHH---------HHHHHHHHHHGGGCTTSE-EEEEEHHHHH T ss_pred EEEEEHHHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHH---------HHHHHHHHHHHHHCCCCE-EEECHHHHHH T ss_conf 99974899999999998887547---8657521255201155---------899999999996579947-8742699999 Q ss_pred ECC--CCCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 002--2366768999--85----120225555414477279992087647558875522213368668389999999999 Q gi|254780397|r 258 HHS--ARQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAA 329 (343) Q Consensus 258 ~~~--~~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~ 329 (343) .+- .-.+||++|+ || .|++-.-.-.+++--+.|+- =-.--.-|-||||.|||||++|||.+|+-|.-+-+ T Consensus 226 ~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglG~~psanig--~~~a~FE~~HGsApdiaGk~~ANP~a~Ils~a~ML 303 (358) T 1a05_A 226 MQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG--EGRAMYEPIHGSAPDIAGQDKANPLATILSVAMML 303 (358) T ss_dssp HHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC--SSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHH T ss_pred HHHHHCHHHCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEC--CCCHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHH T ss_conf 9987392547489763266778888988873565540020215--75111025668780005898659599999999999 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 330 Q 330 (343) Q Consensus 330 ~ 330 (343) + T Consensus 304 ~ 304 (358) T 1a05_A 304 R 304 (358) T ss_dssp H T ss_pred H T ss_conf 7 No 13 >>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* (A:) Probab=96.70 E-value=0.004 Score=38.79 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=58.5 Q ss_pred CCCCHHHEECC--CCCCCCEEEEE------ECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH Q ss_conf 55511210002--23667689998------51202255554144772799920876475588755222133686683899 Q gi|254780397|r 250 PLPADSMFHHS--ARQCYDVAICM------YHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343) Q Consensus 250 P~paDt~F~~~--~~~~~D~vlam------YHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343) ..-.|++...- .-..||++|+- -.|.+.--...+++--+.|+ |--.--.-|-||||.|||||++|||.+| T Consensus 283 ~~~vDa~~~~lv~~P~~fdViv~~Nl~GDILSDlaa~l~GglG~~ps~ni--g~~~a~fEp~HGsApdiaG~~~aNP~a~ 360 (435) T 1tyo_A 283 DRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNM--GDGIAVAEPVHGTAPKYAGKDLINPSAE 360 (435) T ss_dssp EEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEE--CSSCEEEEESSCCCGGGTTSSCSCCHHH T ss_pred EEHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCHHHH T ss_conf 52157999998525235757860167888888898887437764346566--9985687389987311279985381999 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254780397|r 322 VSALKIAAQ 330 (343) Q Consensus 322 ~~ai~~a~~ 330 (343) +-|.-+.++ T Consensus 361 Ils~ammL~ 369 (435) T 1tyo_A 361 ILSASLLIG 369 (435) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 14 >>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} (A:153-306) Probab=96.55 E-value=0.0069 Score=37.36 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=75.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHHEECC Q ss_conf 1024567888989999985313456707999636654453100001210244588864215--87643455511210002 Q gi|254780397|r 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSMFHHS 260 (343) Q Consensus 183 it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~F~~~ 260 (343) -|.+.+.+-++...+..+ .||+ .||+|++. +.|.|.--.|...-..-|++.++++ +..++||+..|.++.+. T Consensus 31 P~~e~~~~Ia~~aa~~a~-~~Gi-ePkVA~LS----~s~~gs~~~~s~~~~~~a~~~~~~~~~~~~vdG~l~~D~Al~~~ 104 (154) T 1r5j_A 31 PTAQELAEIAVNTAETAK-IFDI-DPKIAXLS----FSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPE 104 (154) T ss_dssp CCHHHHHHHHHHHHHHHH-HTTC-CCCEEEEC----SCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHH T ss_pred CCHHHHHHHHHHHHHHHH-HCCC-CCCEEEEE----CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHH T ss_conf 499999999999999999-7399-98345541----35578998627999999999987068896247863377761978 Q ss_pred CC----------CCCCEEEEEECCHHHHHHHHHCC-CCEE--E-EEEEC Q ss_conf 23----------66768999851202255554144-7727--9-99208 Q gi|254780397|r 261 AR----------QCYDVAICMYHDQALIPIKTLDF-NQTV--N-ITLGL 295 (343) Q Consensus 261 ~~----------~~~D~vlamYHDQglip~K~l~f-~~~V--n-~t~GL 295 (343) .+ ++-|+.|.=.=|-|-+-+|++-+ .++. - +.+|+ T Consensus 105 ~~~~k~~~s~v~G~AnvLI~P~l~agNi~~K~l~~~~~~~~~Gpil~G~ 153 (154) T 1r5j_A 105 TAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQRLGXFDAIGPILQGL 153 (154) T ss_dssp HHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHHHHTTCCEEEEEEEESB T ss_pred HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECHHHHCC T ss_conf 8997489987789898899388178799999999834980884054478 No 15 >>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} (A:) Probab=96.47 E-value=0.0024 Score=40.06 Aligned_cols=138 Identities=12% Similarity=0.220 Sum_probs=83.9 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343) +.+|...+.+-++...+.-++. +.|+-+. -...- ....+...-...+.-++..+| .-+.-.|++... T Consensus 165 ~~~t~~~~~ri~~~Af~~A~~~----~~kvt~v-~K~nv-------~~~~~g~~~~~~~~a~~~p~I~~~~~~vD~~~~~ 232 (363) T 1cnz_A 165 EVYHRFEIERIARIAFESARKR----RRKVTSI-DKANV-------LQSSILWREIVNDVAKTYPDVELAHMYIDNATMQ 232 (363) T ss_dssp EEEEHHHHHHHHHHHHHHHHTT----TSEEEEE-ECTTT-------CHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHC----CCCEEEE-ECCCC-------CCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH T ss_conf 5553899999999999999966----9946898-14764-------1025888999999744589649851435479999 Q ss_pred CCC--CCCCEEEEE------ECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 223--667689998------512022555541447727999208764755887552221336866838999999999999 Q gi|254780397|r 260 SAR--QCYDVAICM------YHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 260 ~~~--~~~D~vlam------YHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) -.+ ..||++|+. -.|++..-.-.+++--+.|+.-. -+.---|-||||.||||||+|||.+|+-|.-+-++. T Consensus 233 lv~~P~~fdViv~~Nl~GDIlsD~aa~l~Gslg~~psanig~d-~~~~fE~~HGsapdiaG~~~aNP~a~ils~a~mL~~ 311 (363) T 1cnz_A 233 LIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQ-GFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRY 311 (363) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTT-SCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHH T ss_pred HHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHEEECC-CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 8534677754431257777778899998514542111012035-427852777865223798864909999999999984 No 16 >>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus} (A:) Probab=96.39 E-value=0.0059 Score=37.75 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=89.1 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE Q ss_conf 320102456788898999998531345670799963665445310000121024458886421587643-4555112100 Q gi|254780397|r 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH 258 (343) Q Consensus 180 ~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~ 258 (343) .+.+|++.+.+-++...+.-++. .+.++-+. =..+.- ..=.-.-..+.++.-++..+|. -+.-.|++-. T Consensus 138 ~~~~t~~~~~ri~~~Af~~A~~~---~rk~Vt~v-~K~ni~------~~~~g~~~~~~~~~a~~yp~I~~~~~~vD~~~~ 207 (333) T 1x0l_A 138 DAVISKKASERIGRAALRIAEGR---PRKTLHIA-HKANVL------PLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAM 207 (333) T ss_dssp EEEEEHHHHHHHHHHHHHHHHTS---TTCEEEEE-ECTTTC------TTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHH T ss_pred CCCCCCCEEEHHHHHHHHHHHHC---CCCCCCEE-ECCCCC------HHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHH T ss_conf 55565111444577999999976---99875106-737613------212368987888876134647998641879999 Q ss_pred CC--CCCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 02--2366768999--85----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 259 HS--ARQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 259 ~~--~~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) +- .-..||++++ || .|++..-+..+++-.+.|+ |.-.----|-||||.|||||++|||.+|+-|.-+-++ T Consensus 208 ~lv~~P~~fdviv~~Nl~GDilsd~~a~~~G~~g~~~s~ni--g~~~a~fe~~Hgsapdiagk~~aNP~a~Ils~a~mL~ 285 (333) T 1x0l_A 208 QLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNI--GDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAMMLD 285 (333) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEE--CSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHH T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 98459734570336067777778999886347654454456--8741000245688734468996695999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) - T Consensus 286 h 286 (333) T 1x0l_A 286 Y 286 (333) T ss_dssp H T ss_pred H T ss_conf 8 No 17 >>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} (A:) Probab=96.39 E-value=0.0051 Score=38.16 Aligned_cols=140 Identities=11% Similarity=0.149 Sum_probs=84.2 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEEC Q ss_conf 20102456788898999998531345670799963665445310000121024458886421587643-45551121000 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFHH 259 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~~ 259 (343) +.+|++.+.+-++...+.-++. ++++-+. -....- ..=..+-.-+.++..++..+|. -..-.|++..+ T Consensus 149 ~~~tr~~~~ria~~AF~~A~~~----~~~vt~v-~K~ni~------~~~~~~f~~~~~~va~~~p~i~~~~~~vD~~~~~ 217 (337) T 1w0d_A 149 SVNTAFGVRRVVADAFERARRR----RKHLTLV-HKTNVL------TFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIH 217 (337) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT----TSEEEEE-ECTTTS------HHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHH T ss_pred EEECCHHEEEHHHHHHHHHHCC----CCEEEEE-ECCHHH------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 8503200232144565787536----8738976-161477------7888999998898741587403445657899999 Q ss_pred C--CCCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEE-ECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 2--2366768999--85----120225555414477279992-0876475588755222133686683899999999999 Q gi|254780397|r 260 S--ARQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITL-GLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 260 ~--~~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~-GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) - +=..||++++ || .|.+..-+-.++.-.+.|+.- |-.+--.-|-||||.|||||++|||.+++-|.-+.++ T Consensus 218 lv~~P~~fdViv~~Nl~GDIlsD~~a~l~Gslg~~~s~nig~~~~~~~~fe~~Hgsapdiagk~~aNP~a~Ils~a~mL~ 297 (337) T 1w0d_A 218 MITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLS 297 (337) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGGGTTSSCSCCHHHHHHHHHHHH T ss_pred HHHCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 97414454511043788988888999854887667774322100341002556665144469996493999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) - T Consensus 298 ~ 298 (337) T 1w0d_A 298 H 298 (337) T ss_dssp H T ss_pred H T ss_conf 8 No 18 >>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} (A:1-370) Probab=96.36 E-value=0.0026 Score=39.90 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=84.7 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343) +.+|++.+.+-++...+.-++. + +.|+-++ -..+.=.. =.-.-..+.++.-++..+| .-..-.|++..+ T Consensus 160 ~~~t~~~~eri~~~Af~~A~~~-~--rk~Vt~v-~K~nv~~~------t~g~f~~~~~~va~~~p~i~~~~~~vD~~~~~ 229 (370) T 2d1c_A 160 KLISWKGSEKIVRFAFELARAE-G--RKKVHCA-TKSNIMKL------AEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQ 229 (370) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-T--CCEEEEE-ECTTTCTT------HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHH T ss_pred EEEEEECCCCEEEHHHHHHHHC-C--CCEEECC-CCCCHHHH------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 3455420001120445689875-9--8434202-20012122------24778888764675579830000124788999 Q ss_pred CC--CCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 22--366768999--85----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 260 SA--RQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 260 ~~--~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) -. -.+||++|+ || .|.+.--...+++--+.|+ |-..--.-|-||||.||||+++|||.+++.|.-+-++ T Consensus 230 lv~~P~~fdViv~~Nl~GDIlsD~aa~l~GslG~~~s~ni--g~~~a~fE~~HGsapdiaG~~~aNP~a~ils~ammL~ 306 (370) T 2d1c_A 230 LVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANI--GNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLR 306 (370) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEE--CSSCEEEEESSCCCTTTTTSSCCCCHHHHHHHHHHHH T ss_pred HHHCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 9850245461211648888898788760687566664412--8974212222332154369886590999999999998 No 19 >>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} (A:1-23,A:155-309) Probab=96.32 E-value=0.0082 Score=36.91 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=72.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHHEECC Q ss_conf 1024567888989999985313456707999636654453100001210244588864215--87643455511210002 Q gi|254780397|r 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSMFHHS 260 (343) Q Consensus 183 it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~F~~~ 260 (343) =|.+.+.+-+....+..++ ||..+||+|+++- .|.|.--.+......-|.+.++++ +..|+||+..|.++.+. T Consensus 54 P~~eql~dIa~naa~~a~~-lg~~~PkVAlLS~----se~gs~~~~st~~~~~a~~~~~~~~~~~~VdGelq~D~Als~e 128 (178) T 1vmi_A 54 PTAAQLADIALASAETWRA-ITGEEPRVAXLSF----SSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPE 128 (178) T ss_dssp CCHHHHHHHHHHHHHHHHH-HHSSCCEEEEECS----CSTTSSCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHH T ss_pred CCHHHHHHHHHHHHHHHHH-HCCCCCCEEEEEE----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCHH T ss_conf 8999999999989999998-4675331003320----1567886367899999999998519876426773055552777 Q ss_pred CC----------CCCCEEEEEECCHHHHHHHHHCCCC Q ss_conf 23----------6676899985120225555414477 Q gi|254780397|r 261 AR----------QCYDVAICMYHDQALIPIKTLDFNQ 287 (343) Q Consensus 261 ~~----------~~~D~vlamYHDQglip~K~l~f~~ 287 (343) .+ ++-|+.|.-==|-|-+..|++-+.. T Consensus 129 ~~~~K~~~s~v~G~AnvLIfPnleagNi~yK~l~~~~ 165 (178) T 1vmi_A 129 VAAQKAPASPLQGKANVXVFPSLEAGNIGYKIAQRLG 165 (178) T ss_dssp HHHHHCTTCTTTTCCSEEECSSHHHHHHHHHHHHHHH T ss_pred HHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHC T ss_conf 7842499998689798898088288799999999823 No 20 >>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} (C:144-302) Probab=96.28 E-value=0.0077 Score=37.07 Aligned_cols=101 Identities=12% Similarity=0.061 Sum_probs=73.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHHEECC Q ss_conf 1024567888989999985313456707999636654453100001210244588864215--87643455511210002 Q gi|254780397|r 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSMFHHS 260 (343) Q Consensus 183 it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~F~~~ 260 (343) -+.+.+.+-+....+..+ .||+++||+|++.- .|.|.--.|..+-..-|.+.++++ +..++||+..|.++.+. T Consensus 35 P~~~qla~I~~~a~~~a~-~lGie~PkVA~LS~----s~~gs~~~~st~~~~~a~~~~~~~~~~~~vdGel~~D~Al~~~ 109 (159) T 2af4_C 35 PSVEDVANIAVISAKTFE-LLVQDVPKVAMLSY----STKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPK 109 (159) T ss_dssp CCHHHHHHHHHHHHHHHH-HHHCSCCEEEEECS----CSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHH T ss_pred CCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEE----CCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCHHHHCCHH T ss_conf 428899999999999998-72133330445651----2568987720689999999974418894042652065522967 Q ss_pred CC----------CCCCEEEEEECCHHHHHHHHHCCCCE Q ss_conf 23----------66768999851202255554144772 Q gi|254780397|r 261 AR----------QCYDVAICMYHDQALIPIKTLDFNQT 288 (343) Q Consensus 261 ~~----------~~~D~vlamYHDQglip~K~l~f~~~ 288 (343) .+ ++-|+.|.=-=|-|-+-.|++-+-.+ T Consensus 110 ~~~~k~~~s~v~G~Anvli~Pnl~agNi~~K~~~~~~~ 147 (159) T 2af4_C 110 VAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLAK 147 (159) T ss_dssp HHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHHHTSC T ss_pred HHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC T ss_conf 79975899856897998994880787899999998449 No 21 >>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B (B:) Probab=96.25 E-value=0.0038 Score=38.90 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=80.2 Q ss_pred CCCCCHHHHH---HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 0453133343---2010245678889899999853134567079996366544531000012102445888642158764 Q gi|254780397|r 171 TIHIPIADIC---RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI 247 (343) Q Consensus 171 TtHiPLk~V~---~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v 247 (343) ..|.+-.++. +.+|++.+.+-++...+.-++. + +.++-+. =.+..-. .-.-.-.-+.++.-++..+| T Consensus 145 ~e~~~~~~~a~~~~~~tr~~~~ri~~~AF~~A~~~-~--rk~vt~v-~Kanv~~------~~~g~f~~~~~~va~~yp~i 214 (354) T 3blx_B 145 IEHIVCPGVVQSIKLITRDASERVIRYAFEYARAI-G--RPRVIVV-HKSTIQR------LADGLFVNVAKELSKEYPDL 214 (354) T ss_dssp EEEECSTTEEEEEEEEEHHHHHHHHHHHHHHHHHT-T--CSEEEEE-ESCTTTC------HHHHHHHHHHHHHGGGCTTS T ss_pred CCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHH-C--CCCCCEE-EECCCCC------HHHHHHHHHCCHHHHHCCCC T ss_conf 66653111122011331011202322455424444-0--3444204-4024000------20467876420068677986 Q ss_pred -CCCCCCHHHEECC--CCCCCCEEEE----EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCC Q ss_conf -3455511210002--2366768999----8512----022555541447727999208764755887552221336866 Q gi|254780397|r 248 -IGPLPADSMFHHS--ARQCYDVAIC----MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLT 316 (343) Q Consensus 248 -~GP~paDt~F~~~--~~~~~D~vla----mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a 316 (343) ....-.|++-..- .-..||+++. ||=| .+.--+..+++--+- .-.|--..-.-|-||||.|||||++| T Consensus 215 ~~~~~~vD~~~~~lv~~P~~fdviv~v~~Nl~GDIlsd~~a~l~Gg~g~~~s~-~~~gd~~a~fE~~HGsapdiaG~~~a 293 (354) T 3blx_B 215 TLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPS-ANIGHKISIFEAVHGSAPDIAGQDKA 293 (354) T ss_dssp EEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEE-EEEESSCEEEEECSCCCGGGTTTTCC T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHCCCCCC T ss_conf 00345678899987614001164123213343456777776652155554113-35674210136556652765699974 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 838999999999999 Q gi|254780397|r 317 QEESLVSALKIAAQL 331 (343) Q Consensus 317 ~~~s~~~ai~~a~~~ 331 (343) ||.+|+-|.-+-++- T Consensus 294 NP~a~Ils~a~mL~~ 308 (354) T 3blx_B 294 NPTALLLSSVMMLNH 308 (354) T ss_dssp CTHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 909999999999998 No 22 >>1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans} (A:) Probab=96.18 E-value=0.0049 Score=38.26 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=82.4 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEE Q ss_conf 201024567888989999985313456707999-6366544531000012102445888642158764-34555112100 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFH 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~ 258 (343) +.+|++.+.+-++...+.-++. +.++-+. ==|=-.--.| +..-+.+.+++ ..++ .-..-.|++.. T Consensus 160 ~~~t~~~~~ri~r~AF~~A~~~----~k~vt~v~KaNv~~~~~g--------~~~~~~~~~~e-~p~i~~~~~~vDa~~~ 226 (366) T 1v53_A 160 LAYTREEIERIIEKAFQLAQIR----RKKLASVDKANVLESSRM--------WREIAEETAKK-YPDVELSHMLVDSTSM 226 (366) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT----TSEEEEEECTTTCHHHHH--------HHHHHHHHHTT-CTTSEEEEEEHHHHHH T ss_pred EEHHHHHHHHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCH--------HHHHHHHHHHH-CCCEEEEEEEHHHHHH T ss_conf 0000120235556789988746----991014313530024622--------87999999814-8986999988477788 Q ss_pred CC--CCCCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 02--23667689998--5----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 259 HS--ARQCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 259 ~~--~~~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) .- +-.+||++|+. | .|++..-.-.+++--+.|+-- =-..---|-||||.|||||++|||.+++.|.-+-++ T Consensus 227 ~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglG~~ps~nig~-d~~a~fE~~HGsApdiaGk~~aNP~a~Ils~ammL~ 305 (366) T 1v53_A 227 QLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRS-DRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLR 305 (366) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHTTTTSCTTSCEEEEECS-SSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHH T ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 9873234455463204887788899998726764220100168-732685376775455369997596999999999998 Q ss_pred HHH Q ss_conf 998 Q gi|254780397|r 331 LGY 333 (343) Q Consensus 331 ~~~ 333 (343) ..- T Consensus 306 ~lg 308 (366) T 1v53_A 306 YSF 308 (366) T ss_dssp HHH T ss_pred HHC T ss_conf 627 No 23 >>1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding, oxidoreductase; 2.10A {Thermus thermophilus HB8} (A:) Probab=96.15 E-value=0.0045 Score=38.48 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=81.4 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEE Q ss_conf 201024567888989999985313456707999636-6544531000012102445888642158764-34555112100 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLN-PHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFH 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLN-PHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~ 258 (343) +.+|++.+.+-++...+.-++. +++...+-==| .|..+ | +..-+-+.++.. -+| .-..-.|++.. T Consensus 155 ~~~tr~~~~ri~~~AF~~A~~r---~~~vt~v~K~nv~~~~~----~-----~~~~~~~~a~~~-p~i~~~~~~vD~~~~ 221 (345) T 1g2u_A 155 ERYSKPEVERVARVAFEVARKR---RKHVVSVDKANVLEVGE----F-----WRKTVEEVGRGY-PDVALEHQYVDAMAM 221 (345) T ss_dssp CCCCHHHHHHHHHHHHHHHHTT---TSEEEEEECTTTCHHHH----H-----HHHHHHHHHTTC-TTSEEEEEEHHHHHH T ss_pred EEECHHHHHHHHHHHHHHHHHC---CCCEEEECCCCCEECCH----H-----HHHHHHHHHCCC-CCEEEEEEECCHHHH T ss_conf 8972899999999999998734---65067641477420335----6-----889999986247-845887530058889 Q ss_pred CCCC--CCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 0223--66768999--85----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 259 HSAR--QCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 259 ~~~~--~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) .-.+ ..||++|+ || .|++..-.-.++.--+.|+. -..--.-|-||||.|||||++|||.+|+-|.-+-++ T Consensus 222 ~lv~~P~~fdViva~Nl~GDIlSD~~a~l~G~lg~~ps~nig--~~~a~fE~~HGsApdiaG~~~ANP~a~Ils~ammL~ 299 (345) T 1g2u_A 222 HLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLG--RGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLE 299 (345) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEE--SSCCEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHH T ss_pred HHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCEECC--CCCCEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 861487556279754502778888998875265621321106--874110146777333269996494999999999986 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) . T Consensus 300 ~ 300 (345) T 1g2u_A 300 H 300 (345) T ss_dssp H T ss_pred H T ss_conf 3 No 24 >>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* (A:) Probab=96.10 E-value=0.0045 Score=38.49 Aligned_cols=140 Identities=13% Similarity=0.191 Sum_probs=83.3 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCC-CCCCCCHHHEE Q ss_conf 201024567888989999985313456707999636654453100001210244588864-2158764-34555112100 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL-RNDNKNI-IGPLPADSMFH 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~-~~~g~~v-~GP~paDt~F~ 258 (343) +.+|++.+.+-++...+.-++. .++++ ++--+.+.=. .-.-...-+.++. +++..+| ....-.|++.. T Consensus 152 ~~~t~~~~eri~~~Af~~A~~~---~rk~v-t~v~k~n~~~------~~~g~f~~~~~e~~~~~~p~i~~~~~~vD~~~~ 221 (349) T 3blx_A 152 KVMTRPKTERIARFAFDFAKKY---NRKSV-TAVHKANIMK------LGDGLFRNIITEIGQKEYPDIDVSSIIVDNASM 221 (349) T ss_dssp EEEEHHHHHHHHHHHHHHHHHT---TCCEE-EEEECTTTST------THHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHH T ss_pred EEEEEECHHHHHHHHHHHHCCC---CCCCE-EEEEECCCCE------ECCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH T ss_conf 5643200102434765421014---89742-7887157501------031478889999875138983014657899999 Q ss_pred CC--CCCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 02--2366768999--85----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 259 HS--ARQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 259 ~~--~~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) .- .-.+||++|+ || .|++..-...+++--+.|+.- -...---|-||||.||||||+|||.+|+-|.-+-++ T Consensus 222 ~lv~~P~~fdViv~~Nl~GDIlsD~aa~~~GslG~~ps~nig~-~~~~~fe~~HGsapdiaGk~~aNP~a~Ils~ammL~ 300 (349) T 3blx_A 222 QAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGR-DYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLN 300 (349) T ss_dssp HHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEES-SCEEECCTTTTSCC--CCTTCSCCHHHHHHHHHHHH T ss_pred HHHHCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCEEECC-CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9874044665000068899988899988751566544301126-642011035665601047985093999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780397|r 331 L 331 (343) Q Consensus 331 ~ 331 (343) - T Consensus 301 ~ 301 (349) T 3blx_A 301 H 301 (349) T ss_dssp H T ss_pred H T ss_conf 8 No 25 >>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* (A:1-153,A:201-427) Probab=96.09 E-value=0.0032 Score=39.35 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=64.0 Q ss_pred CCCCCHHHEECCC-CCCCCEEEE------EECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCC------C Q ss_conf 4555112100022-366768999------85120225555414477279992087647558875522213368------6 Q gi|254780397|r 249 GPLPADSMFHHSA-RQCYDVAIC------MYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSS------L 315 (343) Q Consensus 249 GP~paDt~F~~~~-~~~~D~vla------mYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~------~ 315 (343) -..-.|++-..-. ..+||++|+ .-.|.+..-.-.++.-.++|+.-+=..--.-|-||||-|||||+ + T Consensus 216 ~~~~vD~~~~~lv~~P~fdVivt~Nl~GDIlSDlaa~l~GslGl~~s~nig~~~a~f~~e~~HGSApdiaGk~~~~~~n~ 295 (380) T 2qfy_A 216 EHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETS 295 (380) T ss_dssp EEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHTTCCCC T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 12346688774248988648985575420788788885288666640120688775146255046311125666237675 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 6838999999999999 Q gi|254780397|r 316 TQEESLVSALKIAAQL 331 (343) Q Consensus 316 a~~~s~~~ai~~a~~~ 331 (343) |||.+++.|.-+-++- T Consensus 296 aNP~a~ils~a~mL~h 311 (380) T 2qfy_A 296 TNSIASIFAWSRGLLK 311 (380) T ss_dssp CCCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 6849999999999997 No 26 >>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} (A:151-302) Probab=95.96 E-value=0.015 Score=35.37 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=77.4 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCHHHEEC Q ss_conf 0102456788898999998531345670799963665445310000121024458886421--58764345551121000 Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN--DNKNIIGPLPADSMFHH 259 (343) Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~--~g~~v~GP~paDt~F~~ 259 (343) .-|.+.+.+-+....+..+ .||+ .||+|++. ++|.|.--.|..+-..-+.+.+++ .+..++||+..|.++.+ T Consensus 28 ~P~~eq~~~I~~~a~~~a~-~lG~-ePkVA~LS----~s~~g~~~~~s~~~~~~a~~~~~~~~~~~~idG~~~~D~Al~~ 101 (152) T 1td9_A 28 APDSQDLAEIAIESANTAK-MFDI-EPRVAMLS----FSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVP 101 (152) T ss_dssp SCCHHHHHHHHHHHHHHHH-TTTC-CCCEEEEC----SSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCH T ss_pred CCCHHHHHHHHHHHHHHHH-HHCC-CCCEEEEE----CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHCCCH T ss_conf 6889999999999999998-6254-65210132----0466788885305688999999613888546255305430387 Q ss_pred CC----------CCCCCEEEEEECCHHHHHHHHHCC-CCEEE---EEEEC Q ss_conf 22----------366768999851202255554144-77279---99208 Q gi|254780397|r 260 SA----------RQCYDVAICMYHDQALIPIKTLDF-NQTVN---ITLGL 295 (343) Q Consensus 260 ~~----------~~~~D~vlamYHDQglip~K~l~f-~~~Vn---~t~GL 295 (343) .. .++.|+.|.=-=|-|-+-+|++-+ .++.. +.+|+ T Consensus 102 e~~~~k~~~s~v~g~aniLI~P~l~agNi~~K~l~~~~~~~~~G~iL~G~ 151 (152) T 1td9_A 102 SVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIAQRLGNFEAVGPILQGL 151 (152) T ss_dssp HHHHHHCTTSSCSSCCSEEECSSHHHHHHHHHHHHHTTTCEEEEEEEESB T ss_pred HHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCHHHCC T ss_conf 66211279986688788899388078799999999844983976164467 No 27 >>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:1-119,A:283-336) Probab=95.85 E-value=0.011 Score=36.06 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=60.6 Q ss_pred CCCCCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEEC Q ss_conf 88883899-71898774789999984285-23248989999399999999998189974475386101112678537610 Q gi|254780397|r 2 DEFLPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIIS 79 (343) Q Consensus 2 ~k~~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~ 79 (343) ++|.+|++ .|| .--||+.++++...- +-.....++++|+.+.++...+ ..-.+..+...+...-.. T Consensus 1 s~~~kIAvDaMG--gD~~p~~~i~ga~~al~~~~~~~i~LvG~~~~i~~~l~---~~~ri~iv~a~~vI~m~d------- 68 (173) T 1u7n_A 1 SNAXKIAVDAXG--GDNAPQAIVEGVXLAKQDFPDIEFQLYGKEAEIKKYIT---DEKNITIIHTDEKIASDD------- 68 (173) T ss_dssp ---CEEEEESSC--STTTTHHHHHHHHHHHHHCTTCEEEEEECHHHHHTTCS---CCTTEEEEECSCCCCTTC------- T ss_pred CCCEEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHC---CCCCEEEEECCCCCCCCC------- T ss_conf 995399998259--86680789999999998788977999939999998652---158838996876136897------- Q ss_pred CCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH Q ss_conf 3332200135531000002----467788776643012343044322344777641 Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASS----TIANIEKAVSLTLSGQALAIVTNPIAKFLLYQE 131 (343) Q Consensus 80 ~~~~~~~~~G~~s~~~g~~----~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~a 131 (343) ....+ --.|+..|++++++|++||+|.+=-+=..+-.+ T Consensus 69 --------------~p~~aiR~kk~SSm~~a~~lvk~g~ada~VSaGnTGA~~a~a 110 (173) T 1u7n_A 69 --------------EPVKAIRRKKTASXVLAAQAVKNGEADAIFSAGNTGALLAAG 110 (173) T ss_dssp --------------CHHHHHHHCTTSHHHHHHHHHHHTSCSEEEESSCHHHHHHHH T ss_pred --------------CHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHH T ss_conf --------------578999862034188999998633355675337752111114 No 28 >>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} (A:) Probab=95.79 E-value=0.007 Score=37.30 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=82.2 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343) +.+|++.+.+-++...+.-++. +++...|-==|=. .-+--+.. +..+.-++-.+| .-..-.|++... T Consensus 169 ~~~tr~~~eri~~~Af~~A~~~---~~~vt~v~K~nv~--------~~~g~f~~-~~~eva~~~p~i~~~~~~vD~~~~~ 236 (366) T 1vlc_A 169 MIYDRKTVERIARTAFEIAKNR---RKKVTSVDKANVL--------YSSMLWRK-VVNEVAREYPDVELTHIYVDNAAMQ 236 (366) T ss_dssp CCCCHHHHHHHHHHHHHHHHTT---TSEEEEEECTTTC--------HHHHHHHH-HHHHHHTTCTTSEEEEEEHHHHHHH T ss_pred EEECHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCE--------ECCHHHHH-HHHHHHHHCCCEEEEEEEHHHHHHH T ss_conf 9951488899999999998648---9738999457750--------02188999-9999996679848998629899999 Q ss_pred CC--CCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 22--366768999--85----1202255554144772799920876475588755222133686683899999999999 Q gi|254780397|r 260 SA--RQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343) Q Consensus 260 ~~--~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343) -. -.+||++|+ || .|.+..-.-.+++--+.|+. +---.-|-||||.||||+++|||.+|+-|.-+-++ T Consensus 237 lv~~P~~fdViv~~Nl~GDIlsD~~a~l~G~~G~~~sanig---~~~~fe~~HGsApdiaG~~~aNP~a~Ils~a~ML~ 312 (366) T 1vlc_A 237 LILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG---DKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLE 312 (366) T ss_dssp HHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES---SSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHH T ss_pred HHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHCCC---CHHEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 98666877589854177777778899985353202343148---30000026687124269986492999999999987 No 29 >>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} (A:) Probab=95.72 E-value=0.016 Score=35.24 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=82.6 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEE-- Q ss_conf 201024567888989999985313456707999636654453100001210244588864215876434555112100-- Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFH-- 258 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~-- 258 (343) +.+|.+.+.+-++...+.-++ -+++--.|-==|=...-.|.+=. +.++....++.++= .-.|.+=. T Consensus 139 ~~~t~~~~eriar~AF~~A~~---~~~~Vt~v~K~ni~~~~~~~~~~--------~~~~~~~~~~~~~~-~~vD~~~~~l 206 (336) T 1wpw_A 139 KIITRFASERIAKVGLNFALR---RRKKVTCVHKANVMRITDGLFAE--------ACRSVLKGKVEYSE-MYVDAAAANL 206 (336) T ss_dssp EEEEHHHHHHHHHHHHHHHHT---TTSEEEEEECTTTCTTHHHHHHH--------HHHHHHTTTSEEEE-EEHHHHHHHH T ss_pred CEEEEHHHHHHHHHHHHHHHH---CCCEEEEEECCCCHHHHHCCCEE--------EEEEEEEEEEEEEE-EEHHHHHHHH T ss_conf 224311131466535777875---69827886426500001012126--------78874201699975-2013455567 Q ss_pred CCCCCCCCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 022366768999--85----120225555414477279992087647558875522213368668389999999999999 Q gi|254780397|r 259 HSARQCYDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLG 332 (343) Q Consensus 259 ~~~~~~~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~ 332 (343) -..-..||++++ || .|.+..-+..++.-.++|+ |--.-..-|-||||.||||+++|||.+++-|.-+.++-. T Consensus 207 v~~P~~fdViv~~Nl~GDIlsD~~a~l~Gslg~~~s~ni--g~~~a~fEp~HGsap~iag~~~aNP~a~Ils~ammL~~l 284 (336) T 1wpw_A 207 VRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANI--GDKKALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERM 284 (336) T ss_dssp HHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEE--CSSCEEEEESSCCCTTTTTSSCCCTHHHHHHHHHHHHHH T ss_pred HHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 227996428974368888777898876088411224334--998603246655442458998559399999999999985 Q ss_pred H Q ss_conf 8 Q gi|254780397|r 333 Y 333 (343) Q Consensus 333 ~ 333 (343) - T Consensus 285 g 285 (336) T 1wpw_A 285 Y 285 (336) T ss_dssp H T ss_pred C T ss_conf 7 No 30 >>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} (A:1-150,A:303-329) Probab=95.52 E-value=0.018 Score=34.79 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=75.9 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC Q ss_conf 88838997189877478999998428523248989999399999999998189974-47538610111267853761033 Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP 81 (343) Q Consensus 3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~ 81 (343) ..++|++..| --+.+ +++.....-.....||++|++..++..++.++++++ +..++..++..... ... . T Consensus 21 ~~krIv~~eg----~D~rv-L~AA~~~~~egia~pILiG~~~~I~~~a~~~gl~l~~~~Iid~~~~~~~~~-~~~----~ 90 (177) T 1td9_A 21 KDVKIVFPEG----LDERI-LEAVSKLAGNKVLNPIVIGNENEIQAKAKELNLTLGGVKIYDPHTYEGMED-LVQ----A 90 (177) T ss_dssp SCCEEEESCT----TCHHH-HHHHHHHHHTTSSEEEEESCHHHHHHHHHTTTBCCTTCEEECTTTCTTHHH-HHH----H T ss_pred CCCEEEEECC----CCHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHH-HHH----H T ss_conf 9998997288----99899-999999998699689997799999999998699845556678763266899-999----9 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHH-HHHHHHCCCCCC Q ss_conf 32200135531000002467788776643012343044322344-777641013256 Q gi|254780397|r 82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAK-FLLYQEKFKFPG 137 (343) Q Consensus 82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK-~~l~~aG~~f~G 137 (343) +.....-.-.+.++-+...+-...|+.++..|++|++|+|=++. ..+..+..+-.| T Consensus 91 ~~~~r~~KG~~~~a~~~~~dp~~~Aa~mV~~G~aD~~v~G~~~sT~~~Lra~l~iIg 147 (177) T 1td9_A 91 FVERRKGKATEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTVRPALQIIK 147 (177) T ss_dssp HHHHTTTSSCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCHHHHHHHHHHTSC T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHCEEEEEECC T ss_conf 887750577299999998644799999886154010463244454332203455225 No 31 >>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} (A:1-152,A:307-337) Probab=95.43 E-value=0.015 Score=35.31 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=71.5 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC Q ss_conf 88838997189877478999998428523248989999399999999998189974-47538610111267853761033 Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP 81 (343) Q Consensus 3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~ 81 (343) ..++|++.-|+ -+.+ +++.....-...+.||++|+...++..++.+++++. +..++..+...... .. -. T Consensus 23 ~~krIv~~ege----D~rv-L~Aa~~~~~egia~pILvG~~~~I~~~a~~~gl~l~~~~Iid~~~~~~~~~-~~----~~ 92 (183) T 1r5j_A 23 KNXKIVFPEGN----DERV-VRAAARLKFEGLLEPIILGQSEEVRNLLTKLGFADQDYTIINPNEYADFDK-XK----EA 92 (183) T ss_dssp SCCEEEESCSS----CHHH-HHHHHHHHTTTSCEEEEBSCHHHHHHHHHHTTCCCSSCCCBCSSSCTTHHH-HH----HH T ss_pred CCCEEEECCCC----CHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHH-HH----HH T ss_conf 89989980879----9899-999999998799689997799999999997699965755668786688999-99----99 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHH-HHHHHH Q ss_conf 32200135531000002467788776643012343044322344-777641 Q gi|254780397|r 82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAK-FLLYQE 131 (343) Q Consensus 82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK-~~l~~a 131 (343) +.....-.-.+..+-+...+-...|+.+...|++|++|+|-++. .....+ T Consensus 93 ~~~~r~rkg~~~~A~~~~~~~~~~Aa~lV~~G~aD~lv~G~~~sT~~~lra 143 (183) T 1r5j_A 93 FVEVRKGKATLEDADKXLRDVNYFGVXLVKXGLADGXVSGAIHSTADTVRP 143 (183) T ss_dssp HHHHHTTTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCSHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH T ss_conf 999974788699999997657999999997440440340665464787544 No 32 >>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} (A:24-154,A:310-355) Probab=95.38 E-value=0.022 Score=34.33 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=74.6 Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCCC Q ss_conf 8838997189877478999998428523248989999399999999998189974-475386101112678537610333 Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSPC 82 (343) Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~~ 82 (343) .++|++.-|+ -+. +++|.....-...+.||++|++..++..++.+++++. +..+++.+......- ...+ T Consensus 3 pKRIVfpEge----D~R-VLrAA~~~~~egIa~PILVG~~~~I~~~a~~~gldl~~ieIIDp~~~~~~~~~-----a~~~ 72 (177) T 1vmi_A 3 PARVVFPDAL----DQR-VLKAAQYLHQQGLATPILVANPFELRQFALSHGVAXDGLQVIDPHGNLAXREE-----FAHR 72 (177) T ss_dssp CCEEEESCCS----SHH-HHHHHHHHHHTTSCEEEEESCHHHHHHHHHHHTCCCTTCEEECTTSCHHHHHH-----HHHH T ss_pred CCEEEECCCC----CHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHH-----HHHH T ss_conf 9989976989----989-99999999987995899986899999999977989678889899888889999-----9999 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHH-HHHHHHCC Q ss_conf 2200135531000002467788776643012343044322344-77764101 Q gi|254780397|r 83 GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAK-FLLYQEKF 133 (343) Q Consensus 83 ~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK-~~l~~aG~ 133 (343) ...-.-|.....+-+...+....|.-+...|++||+|+|=++. .....+.. T Consensus 73 ~~r~rkg~t~e~A~~~l~dp~yfAamMV~~G~ADglV~G~~~sTadvLRaaL 124 (177) T 1vmi_A 73 WLARAGEKTPPDALEKLTDPLXFAAAXVSAGKADVCIAGNLSSTANVLRAGL 124 (177) T ss_dssp HHHHHGGGCCTTHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH T ss_conf 9998579978999999851035543454158502684365455798888787 No 33 >>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} (C:1-143,C:303-333) Probab=94.53 E-value=0.016 Score=35.23 Aligned_cols=113 Identities=17% Similarity=0.095 Sum_probs=71.4 Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC Q ss_conf 88389971898774789999984285232489899993999999999981899744753861011126785376103332 Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343) Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343) .++|++.-|+ -|. ++++.....-.....||++|++..++..++.++++ .+..++..+......- . ..-.. T Consensus 16 ~krIvf~Eg~----D~r-vl~AA~~~~~~gia~pILvG~~~~I~~~a~~~~l~-~~eiid~~~~~~~~~~-a---~~~~~ 85 (174) T 2af4_C 16 NKTIALPETE----DIR-TLQAAAKILERGIADIVLVGNEADIKALAGDLDLS-KAKIVDPKTYEKKDEY-I---NAFYE 85 (174) T ss_dssp CCEEEECCTT----SHH-HHHHHHHHHHHTSCEEEEESCHHHHHHHHSSCCCT-TSEEECTTSCTTHHHH-H---HHHHH T ss_pred CCEEEECCCC----CHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC-CCEEECCCCCHHHHHH-H---HHHHH T ss_conf 9989986879----979-99999999986991699987999999999858998-6778788754156889-9---99999 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHH Q ss_conf 2001355310000024677887766430123430443223447 Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKF 126 (343) Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~ 126 (343) ..-.-|.....+-+...+-...|+.++..|++||+|+|=++.. T Consensus 86 ~r~~KG~t~~~A~~~v~~~~~~a~~mV~~G~aD~~v~G~~~tT 128 (174) T 2af4_C 86 LRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSS 128 (174) T ss_dssp HHGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCS T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC T ss_conf 8711599999998754237799999997586310221566664 No 34 >>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* (A:1-137,A:182-402) Probab=93.93 E-value=0.028 Score=33.70 Aligned_cols=143 Identities=10% Similarity=-0.050 Sum_probs=80.3 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH----CCCCCCCCCCCHHHE Q ss_conf 0102456788898999998531345670799963665445310000121024458886421----587643455511210 Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN----DNKNIIGPLPADSMF 257 (343) Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~----~g~~v~GP~paDt~F 257 (343) .+|++.+.+-++...+.-++. .++-..|.==|==.=-.|+| +|.-..+ +-+..+. .++.+ -..-.|++. T Consensus 136 ~~Tr~~~~RI~r~AFe~A~~r---~kkVt~v~KaNimk~tdglf-~~~~~ev--a~e~~~~~~~~p~I~~-e~~~vD~~~ 208 (358) T 2uxq_A 136 DFTVASIGHFARACFEYSLDQ---KIDCWFATKDTISKQYDQRF-KIIFEEI--FAQEYKEKFAAAGIEY-FYTLIDDVV 208 (358) T ss_dssp GGEHHHHHHHHHHHHHHHHHH---TCCEEEEECTTTSTTHHHHH-HHHHHHH--HHHHTHHHHHHHTCCE-EEEEHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHH-HHHHHHH--HHHHHHCCCCCCCCCH-HHHHHHHHH T ss_conf 421665788999999998623---75357653453277669999-9999999--9887410112354420-344577777 Q ss_pred ECCCC-CCCCEEEEE--E----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCC------CCCHHHHHHH Q ss_conf 00223-667689998--5----120225555414477279992087647558875522213368------6683899999 Q gi|254780397|r 258 HHSAR-QCYDVAICM--Y----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSS------LTQEESLVSA 324 (343) Q Consensus 258 ~~~~~-~~~D~vlam--Y----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~------~a~~~s~~~a 324 (343) ..-.+ ..||++|+- | .|.+..-+-.++.--++|+.. -...---|-||||-|||||+ +|||.+++-| T Consensus 209 ~~lv~~p~fdViVt~NL~GDILSDlaa~l~GslGlapSanig~-dg~a~FEp~HGSAPdiaGk~~~~~~~~ANP~A~IlS 287 (358) T 2uxq_A 209 ARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSP-YGYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYA 287 (358) T ss_dssp HHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECT-TSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHH T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 6632589877999533157777776544238877665422588-652342045564056789987414355591999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780397|r 325 LKIAAQLG 332 (343) Q Consensus 325 i~~a~~~~ 332 (343) .-+.++.. T Consensus 288 ~amMLehl 295 (358) T 2uxq_A 288 WTGALRKR 295 (358) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999983 No 35 >>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} (A:1-139,A:185-413) Probab=93.73 E-value=0.064 Score=31.54 Aligned_cols=141 Identities=10% Similarity=-0.011 Sum_probs=84.1 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--------CCCCC Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764--------34555 Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI--------IGPLP 252 (343) Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v--------~GP~p 252 (343) ...|++.+.+-++...+.-++. .++-..|.==|-=-=-+|+| .-+..+.-++-.++ .-... T Consensus 137 ~d~Tr~~~eRIar~AF~~A~~r---~kkVt~v~KaNvlk~tdglf--------~ev~~eva~~ypdv~~d~~~I~i~~~~ 205 (368) T 1lwd_A 137 GDQTDESISGFAHSCFQYAIQK---KWPLYMSTKNTILKAYDGRF--------KDIFQEIFEKHYKTDFDKYKIWYEHRL 205 (368) T ss_dssp SGGEHHHHHHHHHHHHHHHHHH---TCCEEEEECTTTSTTHHHHH--------HHHHHHHHHHHTHHHHHHTTCCEEEEE T ss_pred CEECHHHHHHHHHHHHHHHHHC---CCCEEEEECCCEEECCCHHH--------HHHHHHHHHHHCCCCCCCCEEEEEHHH T ss_conf 3162367899999999999965---98558874466102111689--------999999998730123432269964446 Q ss_pred CHHHEECCCCCC-CCEEEE--EE----CCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCC------CCCCHH Q ss_conf 112100022366-768999--85----12022555541447727999208764755887552221336------866838 Q gi|254780397|r 253 ADSMFHHSARQC-YDVAIC--MY----HDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGS------SLTQEE 319 (343) Q Consensus 253 aDt~F~~~~~~~-~D~vla--mY----HDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk------~~a~~~ 319 (343) .|++-..-...- ..++|+ || .|.+..-+-.++.-.+.|+--.-.+.-.-|-||||-|+||| |+|||. T Consensus 206 vDa~~~~Lv~~P~~fVIVt~NLyGDILSDiaa~l~GslGlapSanigd~~a~f~~Ep~HGSAPdiAGkd~~~~~~iANPi 285 (368) T 1lwd_A 206 IDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPI 285 (368) T ss_dssp HHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTTCCCCCCCH T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCHHHCCCCCCCCHH T ss_conf 88998751489877299976743267777788753874101444257887631311456861310324431787741879 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780397|r 320 SLVSALKIAAQLG 332 (343) Q Consensus 320 s~~~ai~~a~~~~ 332 (343) +++.|.-+-++-. T Consensus 286 A~IlSaAmMLehl 298 (368) T 1lwd_A 286 ASIFAWTRGLEHR 298 (368) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999973 No 36 >>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima MSB8} (A:1-104,A:283-399) Probab=91.47 E-value=0.16 Score=29.17 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=49.9 Q ss_pred HHHHHHHHHHHHCCCCCC-CCCCCHHHEECC-----CCCCCCEEEEEECCHHHHHHHH--HCCCCEEEEEEECCEEEECC Q ss_conf 024458886421587643-455511210002-----2366768999851202255554--14477279992087647558 Q gi|254780397|r 231 NIIIPAITYLRNDNKNII-GPLPADSMFHHS-----ARQCYDVAICMYHDQALIPIKT--LDFNQTVNITLGLPFVRTSP 302 (343) Q Consensus 231 ~iI~PaI~~~~~~g~~v~-GP~paDt~F~~~-----~~~~~D~vlamYHDQglip~K~--l~f~~~Vn~t~GLp~irtSp 302 (343) .+...|.+..++-|+-|- --+-+|..=.+. ..+.=. |-| -.. +++-.++|+.-. -..-.-| T Consensus 55 qvt~daa~a~~~~~vgvk~atitp~~~rv~e~~lk~~w~spn---------g~i-r~~l~LGlmtS~~igpD-g~~~fEA 123 (221) T 1zor_A 55 QITIEAAKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPN---------ATI-RAYLDLGLMTSVLVSPD-GVYEFEA 123 (221) T ss_dssp HHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSSCCCCHH---------HHH-HHHHTGGGEEEEEECTT-CCEEEEE T ss_pred CCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHH---------HHH-HHHCCCCCCCCCCCCCC-CCCCCCC T ss_conf 888999999997095887450488744355434431003456---------788-75268676543235753-2333211 Q ss_pred CCCCCHH-----HCCCCCC-CHHHHHHHHHHHHHH Q ss_conf 8755222-----1336866-838999999999999 Q gi|254780397|r 303 DHGTAFD-----IAGSSLT-QEESLVSALKIAAQL 331 (343) Q Consensus 303 dHGTafd-----iagk~~a-~~~s~~~ai~~a~~~ 331 (343) .||||.| ||||+.+ ||.+++-|.-+.++- T Consensus 124 aHGTaprh~~~~iaGk~~stNPiA~IlA~t~mL~h 158 (221) T 1zor_A 124 AHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRK 158 (221) T ss_dssp SSCCCHHHHHHHTTTCCCCCCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 35401210002443576763929999999999998 No 37 >>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} (A:120-228) Probab=90.79 E-value=0.83 Score=24.85 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=56.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCHHHEECCC Q ss_conf 1024567888989999985313456707999636654453100001210244588864215-876434555112100022 Q gi|254780397|r 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND-NKNIIGPLPADSMFHHSA 261 (343) Q Consensus 183 it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~-g~~v~GP~paDt~F~~~~ 261 (343) .+.+.+.+-..+-.-..+.-+|+++||++++-. |+.-.-|+| .+.-|-+.+++. .++..|-.-++-+|. T Consensus 31 ~~pe~L~qfA~mG~~ya~~~~~i~~PrVgLLNi----G~Ee~KG~~---~~~~a~~lL~~~~~~nf~G~vEg~di~~--- 100 (109) T 1u7n_A 31 NKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLNN----GTEETKGSE---LTKKAFELLAADETINFVGNVEARELLN--- 100 (109) T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSSCCEEEECS----CC----CCH---HHHHHHHHHHHCTTSCEEEEECGGGGGG--- T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC----CHHHCCCCH---HHHHHHHHHHHCCCCCEEEECCCCCCCC--- T ss_conf 788999999999999999857986534887404----032102569---9999999743135755035524653468--- Q ss_pred CCCCCEEEE Q ss_conf 366768999 Q gi|254780397|r 262 RQCYDVAIC 270 (343) Q Consensus 262 ~~~~D~vla 270 (343) ++.|++|| T Consensus 101 -g~~DVvV~ 108 (109) T 1u7n_A 101 -GVADVVVT 108 (109) T ss_dssp -CSCSEEEC T ss_pred -CCEEEEEE T ss_conf -84169996 No 38 >>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} (A:) Probab=86.27 E-value=0.39 Score=26.86 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=20.2 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHH Q ss_conf 98888389971898774789999984 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAW 26 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal 26 (343) |++..+|++-.|| ||||||+--++ T Consensus 1 M~~~~~I~vipGD--GIGpEv~~a~~ 24 (363) T 1cnz_A 1 MSKNYHIAVLPGD--GIGPEVMAQAL 24 (363) T ss_dssp CCCCEEEEEEEES--TTHHHHHHHHH T ss_pred CCCCCEEEEECCC--CCHHHHHHHHH T ss_conf 9998669998978--75599999999 No 39 >>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} (A:1-140) Probab=61.84 E-value=8.1 Score=18.90 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=35.8 Q ss_pred CCE-EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-----CCCCCCHHHEECCCCCCCCEEEEEECCH Q ss_conf 670-79996366544531000012102445888642158764-----3455511210002236676899985120 Q gi|254780397|r 207 NPR-IAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-----IGPLPADSMFHHSARQCYDVAICMYHDQ 275 (343) Q Consensus 207 ~Pk-IaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-----~GP~paDt~F~~~~~~~~D~vlamYHDQ 275 (343) .|+ +.|. +||++|.+ .=.+......+.+...|+.+ ++|-.+..+........||.|+..==|= T Consensus 23 ~~~~~~vi-~Np~sG~~-----~~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~~~ivv~GGDG 91 (140) T 2qv7_A 23 XRKRARII-YNPTSGKE-----QFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAXHENYDVLIAAGGDG 91 (140) T ss_dssp CCEEEEEE-ECTTSTTS-----CHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH T ss_pred CCCEEEEE-ECCCCCCC-----CHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 66459999-99678887-----57999999999999879929999828966699999988876998899986775 No 40 >>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} (A:) Probab=56.77 E-value=4.5 Score=20.45 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=57.2 Q ss_pred CCEEEEEECCHHHHHHHHHCCCCE---EEEEE--ECCEEEECC--------CCCCCHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 768999851202255554144772---79992--087647558--------87552221336866838999999999999 Q gi|254780397|r 265 YDVAICMYHDQALIPIKTLDFNQT---VNITL--GLPFVRTSP--------DHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343) Q Consensus 265 ~D~vlamYHDQglip~K~l~f~~~---Vn~t~--GLp~irtSp--------dHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343) -=.-|.+|||++.-.+...+-... +|.|+ ||-|-++|| ++.|-|.+-=...+|...|.++++.|++- T Consensus 30 ~~s~V~i~~~~~~~~yrIvg~~d~~vvin~~i~~~l~y~kas~~FhqWrd~r~~~V~GL~F~S~~dA~~F~~~~~~ale~ 109 (120) T 1ddw_A 30 HAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNXTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 109 (120) T ss_dssp SCEEEEEEEETTTTEEEEEEEETTEEEEEEECCTTCCCEECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCEEEECCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 96789999738986799999759889998750488478532662568221655505602548989999999999999999 Q ss_pred HHHH Q ss_conf 9852 Q gi|254780397|r 332 GYQK 335 (343) Q Consensus 332 ~~~~ 335 (343) ...- T Consensus 110 l~~~ 113 (120) T 1ddw_A 110 ARLA 113 (120) T ss_dssp HC-- T ss_pred HHHH T ss_conf 9842 No 41 >>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} (A:) Probab=50.89 E-value=11 Score=18.22 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=44.5 Q ss_pred HHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCC-----CCHHHCC Q ss_conf 86421587643455511210002236676899985120225555414477279992087647558875-----5222133 Q gi|254780397|r 238 TYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHG-----TAFDIAG 312 (343) Q Consensus 238 ~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHG-----Tafdiag 312 (343) ..++..|+.+..--.+..++..-....||+||.=++=-++-.+.++..=+....+-.+|+|-.|.... .|++.-. T Consensus 25 ~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvilD~~mP~~dG~~l~~~ir~~~~~~~~piI~ls~~~~~~~~~~a~~~G~ 104 (142) T 3cg4_A 25 TILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIXXPGXDGWDTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYV 104 (142) T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGE T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCC T ss_conf 99998799999978879999998705766445403567998899999998605458981999827788899999997498 Q ss_pred CC----CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 68----6683899999999999998520 Q gi|254780397|r 313 SS----LTQEESLVSALKIAAQLGYQKN 336 (343) Q Consensus 313 k~----~a~~~s~~~ai~~a~~~~~~~~ 336 (343) .. =.++..+++.+....+..+++. T Consensus 105 ~d~l~KP~~~~~L~~~i~~~~~~~r~~~ 132 (142) T 3cg4_A 105 VDYITKPFDNEDLIEKTTFFXGFVRNQT 132 (142) T ss_dssp EEEEESSCCHHHHHHHHHHHHHHHHHC- T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHH T ss_conf 7799799999999999999999888798 No 42 >>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} (A:1-101,A:193-412) Probab=49.54 E-value=6.3 Score=19.56 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=26.2 Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCC Q ss_conf 78877664301234304432234477764101325647899998342 Q gi|254780397|r 102 NIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKK 148 (343) Q Consensus 102 sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~ 148 (343) .++.-+++|++.++|-.|-+|=. .=..|-.++|.+.++- T Consensus 58 ~~~~~~~~~~~~~idl~ivgpe~--------pL~~Gi~d~~~~vfGp 96 (321) T 1vkz_A 58 PYEGEKTLKAIPEEDIVIPGSEE--------FLVEGVSNWRSNVFGP 96 (321) T ss_dssp CCCTHHHHHTSCSSCEECCSSGG--------GTCC-----CTTBSSC T ss_pred CCCCHHHHHHHCCCCEEEECCCH--------HHHHHHHHCCCCEECC T ss_conf 75217877752479989989888--------9998798739974588 No 43 >>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} (A:1-94,A:247-279) Probab=46.01 E-value=21 Score=16.43 Aligned_cols=84 Identities=21% Similarity=0.248 Sum_probs=49.7 Q ss_pred CCCEEEECC-CCCCCCHHHHHHHHCCCCHHCCCCE-EEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCC Q ss_conf 883899718-9877478999998428523248989-99939999999999818997447538610111267853761033 Q gi|254780397|r 4 FLPLILTQG-DPAGIGPDISLKAWASRQITAIPPF-IYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSP 81 (343) Q Consensus 4 ~~pI~IT~G-DPaGIGpEIilKal~~~~~~~~~~~-viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~ 81 (343) |+++++..+ || ++ +++...-.-...+.| |++||..-++ .....+.+++.+ T Consensus 1 ~krvAVa~a~D~-----~~-L~Av~~A~e~gi~~p~iLvGd~~~I~----------------------~~a~~~eiI~~~ 52 (127) T 1yco_A 1 MITVSIAGGSQP-----EI-LQLVKKALKEAEQPLQFIVFDTNENL----------------------DTENLWKYVHCS 52 (127) T ss_dssp CEEEEEETCCSH-----HH-HHHHHHHHHHCCSCEEEEEEESSCCC----------------------CSSCCSEEEECS T ss_pred CEEEEECCCCCH-----HH-HHHHHHHHHCCCCCCEEEECCCHHHC----------------------CCCCCCEEECCC T ss_conf 969999168998-----99-99999999769988779942823306----------------------300287798799 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH Q ss_conf 32200135531000002467788776643012343044322344777641 Q gi|254780397|r 82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQE 131 (343) Q Consensus 82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~a 131 (343) . .-++-+.|++++.+|++|.|..|=|+...+.++ T Consensus 53 ~----------------~~eAA~~AV~lVr~G~Ad~LMKG~i~T~~lLka 86 (127) T 1yco_A 53 D----------------EAAVAQEAVSLVATGQAQILLKGIIQTHTLLKE 86 (127) T ss_dssp S----------------HHHHHHHHHHHHHSTTCSEEEECSSCHHHHHHH T ss_pred C----------------CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH T ss_conf 9----------------599999999999779987797589894676667 No 44 >>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis} (A:) Probab=42.50 E-value=6.5 Score=19.50 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=48.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEEC--------------C--CCCCCCEEEEEECCHHHHHHHHHCCC Q ss_conf 1000012102445888642158764345551121000--------------2--23667689998512022555541447 Q gi|254780397|r 223 ATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHH--------------S--ARQCYDVAICMYHDQALIPIKTLDFN 286 (343) Q Consensus 223 G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~--------------~--~~~~~D~vlamYHDQglip~K~l~f~ 286 (343) ..++.++.+...-..+.+++.|..+..+.|-|..+.. . ...+.|+||+++.+.--- -=..|+ T Consensus 12 p~f~~~~~~~~~~l~~~l~~~g~~~~~~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~aD~vva~ldg~~~d--~Gt~~E 89 (162) T 3ehd_A 12 PLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKXIALADTENVLASDLLVALLDGPTID--AGVASE 89 (162) T ss_dssp CCSSHHHHHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCSSSCC--HHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCC--CCHHHH T ss_conf 999999999999999999857897278585202465555431459999998899997599999987999899--789999 Q ss_pred CEEEEEEECCEEEECCCC Q ss_conf 727999208764755887 Q gi|254780397|r 287 QTVNITLGLPFVRTSPDH 304 (343) Q Consensus 287 ~~Vn~t~GLp~irtSpdH 304 (343) -|.-.-+|-|++-.++|- T Consensus 90 lG~A~a~gkpV~~~~~d~ 107 (162) T 3ehd_A 90 IGVAYAKGIPVVALYTDS 107 (162) T ss_dssp HHHHHHTTCCEEEECCCG T ss_pred HHHHHHCCCEEEEEECCH T ss_conf 999998699699997132 No 45 >>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} (A:1-143,A:311-332) Probab=38.07 E-value=18 Score=16.81 Aligned_cols=62 Identities=10% Similarity=-0.072 Sum_probs=29.4 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH---EECCCCCCCCEEEEEECC Q ss_conf 567079996366544531000012102445888642158764345551121---000223667689998512 Q gi|254780397|r 206 NNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSM---FHHSARQCYDVAICMYHD 274 (343) Q Consensus 206 ~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~---F~~~~~~~~D~vlamYHD 274 (343) ..+|+.|. .||++| +....+.+.+..+.+.-. +.+.=.-.+|.+ ........+|.|+..==| T Consensus 28 ~~~~~~vi-vNp~SG-----~~~~~~~i~~~l~~~g~~-~~v~~t~~~~~~~~~~~~~~~~~~d~Ivi~GGD 92 (165) T 2bon_A 28 EFPASLLI-LNGKST-----DNLPLREAIMLLREEGMT-IHVRVTWEKGDAARYVEEARKFGVATVIAGGGD 92 (165) T ss_dssp --CCEEEE-ECSSST-----TCHHHHHHHHHHHTTTCC-EEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH T ss_pred CCCCEEEE-ECCCCC-----CCHHHHHHHHHHHHCCCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 69967999-878767-----885499999999977986-999964880579999999987799999999886 No 46 >>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A (A:) Probab=35.02 E-value=24 Score=16.10 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=26.2 Q ss_pred HHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHH Q ss_conf 64215876434555112100022366768999851202255554144772799920876475588755222 Q gi|254780397|r 239 YLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFD 309 (343) Q Consensus 239 ~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafd 309 (343) .+++.|+.+..-..++.++.......||+++.=+.==+.-++.++..=+....+-..|+|-.|..+..... T Consensus 21 ~L~~~g~~v~~a~~~~~al~~~~~~~~dlii~D~~lP~~~G~~l~~~lr~~~~~~~~piI~ls~~~~~~~~ 91 (127) T 2jba_A 21 VLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDR 91 (127) T ss_dssp HHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHH T ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH T ss_conf 99987999999713178999998534625886327899989999999983787899929999898999999 No 47 >>2oa9_A R.MVAI; monomeric endonuclease, restriction enzyme, hydrolase; 1.50A {Kocuria varians} PDB: 2oaa_A (A:69-113,A:206-239) Probab=28.73 E-value=12 Score=17.94 Aligned_cols=11 Identities=64% Similarity=0.999 Sum_probs=8.1 Q ss_pred CCCCCCCHHHC Q ss_conf 58875522213 Q gi|254780397|r 301 SPDHGTAFDIA 311 (343) Q Consensus 301 SpdHGTafdia 311 (343) .-||||||-|- T Consensus 65 ~hdhgt~frin 75 (79) T 2oa9_A 65 THDHGTAFRIN 75 (79) T ss_dssp EEECCCEEEEE T ss_pred CCCCCCCEEEC T ss_conf 64666633575 No 48 >>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} (A:260-459) Probab=27.48 E-value=20 Score=16.51 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=50.1 Q ss_pred HCCCCCCCCCCCHHHEECCCCCCCCEEEEE-ECC-HHHHHHHHHCCCCEEEEE--EECCEEEECCCCCCCHHHCCCC--- Q ss_conf 158764345551121000223667689998-512-022555541447727999--2087647558875522213368--- Q gi|254780397|r 242 NDNKNIIGPLPADSMFHHSARQCYDVAICM-YHD-QALIPIKTLDFNQTVNIT--LGLPFVRTSPDHGTAFDIAGSS--- 314 (343) Q Consensus 242 ~~g~~v~GP~paDt~F~~~~~~~~D~vlam-YHD-Qglip~K~l~f~~~Vn~t--~GLp~irtSpdHGTafdiagk~--- 314 (343) .....+.++.+.+-.+.-- ...|.++.. +++ +|+..+-.+.++.-|-.| .|+|-+-+...+|-...--+.| T Consensus 86 ~~~~~~~~~~~~~~~~~~~--~~~d~~~~~s~~e~~~~~~~eama~g~pvi~~~~~g~~eii~~~~~~~~~~~~~~g~~v 163 (200) T 1rzu_A 86 HGRVGVAIGYNEPLSHLMQ--AGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQF 163 (200) T ss_dssp TTTEEEEESCCHHHHHHHH--HHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE T ss_pred CCCEEEECCCCCHHHHHHH--HHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEE T ss_conf 8706885364714799999--73764447653256778999999869989994799860035358754224678755997 Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf -6683899999999999998520010 Q gi|254780397|r 315 -LTQEESLVSALKIAAQLGYQKNLCN 339 (343) Q Consensus 315 -~a~~~s~~~ai~~a~~~~~~~~~~~ 339 (343) .-|+.++.+||+.++++.+++.... T Consensus 164 ~~~d~~~la~ai~~~l~l~~~~~~~~ 189 (200) T 1rzu_A 164 SPVTLDGLKQAIRRTVRYYHDPKLWT 189 (200) T ss_dssp SSCSHHHHHHHHHHHHHHHTCHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 89999999999999983707999999 No 49 >>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} (A:) Probab=26.80 E-value=32 Score=15.34 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=13.9 Q ss_pred HHCCCCCEEEECHHHHHHHHH-HCCCCCCHHHHHHH Q ss_conf 301234304432234477764-10132564789999 Q gi|254780397|r 110 TLSGQALAIVTNPIAKFLLYQ-EKFKFPGHTEFLAE 144 (343) Q Consensus 110 ~~~g~~~alVT~PInK~~l~~-aG~~f~GhTE~La~ 144 (343) +++-+-+-++--|-...-+.. .|+++.++-++|++ T Consensus 111 a~~~kP~~vtLVPEkr~ElTTegGlDv~~~~~~L~~ 146 (278) T 3gk0_A 111 ACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRA 146 (278) T ss_dssp HHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHH T ss_pred HHHCCEEEEEEECCCCCCCCCCCCEEEHHHHHHHHH T ss_conf 985140389983257653122364541217878999 No 50 >>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} (A:) Probab=25.69 E-value=36 Score=15.06 Aligned_cols=34 Identities=6% Similarity=0.117 Sum_probs=14.3 Q ss_pred HCCCCCEEEECHHHHH-HHHHHCCCCCCHHHHHHH Q ss_conf 0123430443223447-776410132564789999 Q gi|254780397|r 111 LSGQALAIVTNPIAKF-LLYQEKFKFPGHTEFLAE 144 (343) Q Consensus 111 ~~g~~~alVT~PInK~-~l~~aG~~f~GhTE~La~ 144 (343) .+-+-+-++--|=..+ .....|+++.++-+.|++ T Consensus 84 ~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~L~~ 118 (243) T 1m5w_A 84 VETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRD 118 (243) T ss_dssp HHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHH T ss_pred HHCCCCEEEECCCCCCCCCCCCCEEECCHHHHHHH T ss_conf 87699878976788775587774532033889999 No 51 >>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} (A:) Probab=25.36 E-value=46 Score=14.38 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=45.5 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47899998342358866521123322112665304531333432010245678889899999853134 Q gi|254780397|r 138 HTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGI 205 (343) Q Consensus 138 hTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi 205 (343) -++.+.++..-+.+....++|++.-++=+...+.+.+||-|+-.. +--.+-+.+--+....|+.|+. T Consensus 65 ~~d~l~~lL~~N~FSLrkP~~~~Gld~~k~~vlhtR~pL~el~~~-~~~~~FE~l~~~a~~ik~tf~~ 131 (132) T 1s28_A 65 DSNACQSLLRLNEFNLRTPFFTVGLNEKKDGVVHTRIPLLNLDNV-EXRRVFEALLNLSGEVKKTFGF 131 (132) T ss_dssp HHHHHHHHHTTTCCCCCSSCCEEEECTTSEEEEEEEEECTTCCHH-HHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCHHHCCCH-HHHHHHHHHHHHHHHHHHHCCC T ss_conf 778999999815655468669987558764589831575661418-8999999998777778775066 No 52 >>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} (E:132-168) Probab=24.79 E-value=9.1 Score=18.62 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=16.0 Q ss_pred CCCCCCCHHHCCCCCCCHHH Q ss_conf 58875522213368668389 Q gi|254780397|r 301 SPDHGTAFDIAGSSLTQEES 320 (343) Q Consensus 301 SpdHGTafdiagk~~a~~~s 320 (343) =|=||+-||..|+.+..+.+ T Consensus 17 CPCHGs~fd~~G~vi~GPaP 36 (37) T 3cx5_E 17 CPCHGSHYDISGRIRKGPAP 36 (37) T ss_dssp ETTTTEEECTTCCEEESSCC T ss_pred ECCCCCEECCCCCEEECCCC T ss_conf 15979889999998858999 No 53 >>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A (A:260-460) Probab=22.02 E-value=54 Score=13.99 Aligned_cols=137 Identities=12% Similarity=0.029 Sum_probs=71.0 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCC Q ss_conf 02456788898999998531345670799963665445310000121024458886421587643455511210002236 Q gi|254780397|r 184 STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQ 263 (343) Q Consensus 184 t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~ 263 (343) ..+.+...++.+.+... ..|.+-+.+... |.+ .+.+.-.++.+. ..+.+.|+.+.+....-- . T Consensus 44 ~~Kg~~~li~a~~~l~~-----~~~~~~l~~~~~--------~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~ 106 (201) T 2qzs_A 44 SQKGLDLVLEALPGLLE-----QGGQLALLGAGD--------PVL-QEGFLAAAAEYP-GQVGVQIGYHEAFSHRIM--G 106 (201) T ss_dssp GGGCHHHHHHHHHHHHH-----TTCEEEEEEEEC--------HHH-HHHHHHHHHHST-TTEEEEESCCHHHHHHHH--H T ss_pred CCCCHHHHHHHHHHHHH-----HCCEEEEECCCC--------CHH-HHHHHHHHHHCC-CCEEEEECCCHHHHHHHH--H T ss_conf 24781689999999874-----198399943787--------347-788889987467-753786155678877886--3 Q ss_pred CCCEEEEEECC--HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCC-------CCHHHHHHHHHHHHHHHHH Q ss_conf 67689998512--02255554144772799920876475588755222133686-------6838999999999999985 Q gi|254780397|r 264 CYDVAICMYHD--QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSL-------TQEESLVSALKIAAQLGYQ 334 (343) Q Consensus 264 ~~D~vlamYHD--Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~-------a~~~s~~~ai~~a~~~~~~ 334 (343) ..|+.+...+. .|+..+-+++++.-|=.| --+-++--+.+|..+.+.-.+. .|+.++.+||..+..+..+ T Consensus 107 ~~~~~~~~s~~e~~~~~~~eam~~G~pvi~~-~~~~~~e~v~~~~~~~~~~~~~~g~~~~~~d~~~la~ai~~~~~~~~~ 185 (201) T 2qzs_A 107 GADVILVPSRFEPCGLTQLYGLKYGTLPLVR-RTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSR 185 (201) T ss_dssp HCSEEEECCSCCSSCSHHHHHHHHTCEEEEE-SSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTS T ss_pred CCEEEECCCCCCCCCHHHHHHHHCCCCEEEE-CCCCCCCEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCC T ss_conf 0627735645577875999999869989990-899851101267644345667737995899999999999999819256 Q ss_pred HHCC Q ss_conf 2001 Q gi|254780397|r 335 KNLC 338 (343) Q Consensus 335 ~~~~ 338 (343) +... T Consensus 186 ~~~~ 189 (201) T 2qzs_A 186 PSLW 189 (201) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 54 >>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.88A {Caenorhabditis elegans} (A:313-481) Probab=21.91 E-value=54 Score=13.97 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=42.9 Q ss_pred CCCCEEEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC--CCCCCHHHEEC--------------------- Q ss_conf 456707999636--65445310000121024458886421587643--45551121000--------------------- Q gi|254780397|r 205 INNPRIAISGLN--PHAGENATIGIEEKNIIIPAITYLRNDNKNII--GPLPADSMFHH--------------------- 259 (343) Q Consensus 205 i~~PkIaV~gLN--PHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~--GP~paDt~F~~--------------------- 259 (343) ++..||||+||= |..+ +=...-..+.++.|...|..|. -|+-.+..... T Consensus 21 ~~~~rVailGlafK~ntd------D~R~Spa~~li~~L~~~Ga~V~~yDP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169) T 2o3j_A 21 VTDKKIAIFGFAFKKNTG------DTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDP 94 (169) T ss_dssp CTTCEEEEECCSSSTTCC------CCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSH T ss_pred CCCCEEEEEEECCCCCCC------CHHCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHCCEECCCH T ss_conf 566569997422466664------11116321589999981993787568546898865653212023322100222799 Q ss_pred -CCCCCCCEEEEE-ECCHHHHHHHHHCC Q ss_conf -223667689998-51202255554144 Q gi|254780397|r 260 -SARQCYDVAICM-YHDQALIPIKTLDF 285 (343) Q Consensus 260 -~~~~~~D~vlam-YHDQglip~K~l~f 285 (343) .....+|++|-+ =||+ ||.+.+ T Consensus 95 ~~a~~~aDaiVi~t~h~e----f~~l~~ 118 (169) T 2o3j_A 95 YAAARGAHAIVVLTEWDE----FVELNY 118 (169) T ss_dssp HHHHTTCSEEEECSCCGG----GTTSCH T ss_pred HHHHCCCCEEEEECCCHH----HCCCCH T ss_conf 999657988999559967----723899 No 55 >>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} (A:) Probab=21.70 E-value=42 Score=14.60 Aligned_cols=76 Identities=11% Similarity=-0.024 Sum_probs=38.6 Q ss_pred CCCCCCCCHHHHH-HHHHHHHCCCCCCCCC--CCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC-CCEEEEEEECCEE Q ss_conf 1000012102445-8886421587643455--5112100022366768999851202255554144-7727999208764 Q gi|254780397|r 223 ATIGIEEKNIIIP-AITYLRNDNKNIIGPL--PADSMFHHSARQCYDVAICMYHDQALIPIKTLDF-NQTVNITLGLPFV 298 (343) Q Consensus 223 G~~G~EE~~iI~P-aI~~~~~~g~~v~GP~--paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f-~~~Vn~t~GLp~i 298 (343) |..|.+..+-+.| |++.+++.|++++|=. +-+-. ...++|.||+|..++--.-...+.. .+....+++=|=- T Consensus 39 g~~~~~~~~~~~~~a~~~l~~~gid~s~~~s~~l~~~----~~~~~DlIitm~~~~~~~l~~~~~~~~~~~~~~~~d~~~ 114 (146) T 1p8a_A 39 ATSGFHVGQSPDTRSQKVCKSNGVDISKQRARQITKA----DFSKFDVIAALDQSILSDINSMKPSNCRAKVVLFNPPNG 114 (146) T ss_dssp CSCTTSCSCSCTHHHHHHHHHHSCCCCCCCCCCCCSH----HHHSCSEEEESSHHHHHHHHHHCCSSCSCEEEECSCTTS T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCHH----HHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC T ss_conf 7504455787898999999870998403320347687----735689999918889999986567331407872488778 Q ss_pred EECC Q ss_conf 7558 Q gi|254780397|r 299 RTSP 302 (343) Q Consensus 299 rtSp 302 (343) ...| T Consensus 115 i~dp 118 (146) T 1p8a_A 115 VDDP 118 (146) T ss_dssp SCCC T ss_pred CCCC T ss_conf 9999 No 56 >>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} (A:228-478) Probab=21.38 E-value=55 Score=13.91 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=62.6 Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--C Q ss_conf 31333432010245678889899999853-13456707999636--6544531000012102445888642158764--3 Q gi|254780397|r 174 IPIADICRILSTKRIIETSDTVYNAMKKY-FGINNPRIAISGLN--PHAGENATIGIEEKNIIIPAITYLRNDNKNI--I 248 (343) Q Consensus 174 iPLk~V~~~it~~~I~~ki~~~~~~l~~~-~gi~~PkIaV~gLN--PHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v--~ 248 (343) -+|-+....++.......++.+.+.|.+. -.+...+|+|+||= |-. .+-...-..+.++.|.+.|..| . T Consensus 92 ~~li~~a~~iN~~~~~~~~~~v~~~l~~~~~~~~~~~V~ilGlafK~~t------~D~R~Spa~~ii~~L~~~G~~V~v~ 165 (251) T 3g79_A 92 DSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDS------DDARNTPSEPYRDLCLKAGASVMVH 165 (251) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTTC------SCCTTCTHHHHHHHHHHHTCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC------CCHHHCHHHHHHHHHHHCCCEEEEE T ss_conf 9999999999999999999999999998088878988999998878999------7122086999999999688989999 Q ss_pred CCCCCHHHEEC------CCCCCCCEEEEEE-CCH Q ss_conf 45551121000------2236676899985-120 Q gi|254780397|r 249 GPLPADSMFHH------SARQCYDVAICMY-HDQ 275 (343) Q Consensus 249 GP~paDt~F~~------~~~~~~D~vlamY-HDQ 275 (343) -|+-.+-...+ ...+..|+++-+= ||+ T Consensus 166 DP~v~~~~~~~~~~~~~ea~~~aD~ivi~t~h~e 199 (251) T 3g79_A 166 DPYVVNYPGVEISDNLEEVVRNADAIVVLAGHSA 199 (251) T ss_dssp CSSCCCBTTBCEESCHHHHHTTCSEEEECSCCHH T ss_pred CCCCCCCCCCEEECCHHHHHHCCCEEEEECCCHH T ss_conf 9988776896560899999845999999728877 No 57 >>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, protein structure initiative NDRT; HET: 12M; 1.50A {Trypanosoma brucei} (A:) Probab=21.19 E-value=13 Score=17.73 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=63.7 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC-----CHHHEECCC--CCCCCEEEEEEC----- Q ss_conf 56707999636654453100001210244588864215876434555-----112100022--366768999851----- Q gi|254780397|r 206 NNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLP-----ADSMFHHSA--RQCYDVAICMYH----- 273 (343) Q Consensus 206 ~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~p-----aDt~F~~~~--~~~~D~vlamYH----- 273 (343) +.+||-++| | -+-|-.++.+...-+.+.+++.|..+.-|.- +...|.... ..+.|+||+-+. T Consensus 8 ~~~kIYlAG--P----~~~f~~~~~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~i~~~D~~~i~~~D~vva~ld~~~g~ 81 (161) T 2f62_A 8 HXRKIYIAG--P----AVFNPDXGASYYNKVRELLKKENVXPLIPTDNEATEALDIRQKNIQXIKDCDAVIADLSPFRGH 81 (161) T ss_dssp CCCEEEEES--G----GGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSS T ss_pred CCCEEEEEC--C----CCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCC T ss_conf 436799806--8----2318889999999999999978998865544453559999999999998699999981256699 Q ss_pred --CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHC Q ss_conf --20225555414477279992087647558875522213 Q gi|254780397|r 274 --DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIA 311 (343) Q Consensus 274 --DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdia 311 (343) |-|. .|+-|+-..+|.|++-.+.|-.+..+.. T Consensus 82 ~~D~Gt------~~E~G~A~algkpvi~~~~d~r~~~~~~ 115 (161) T 2f62_A 82 EPDCGT------AFEVGCAAALNKXVLTFTSDRRNXREKY 115 (161) T ss_dssp SCCHHH------HHHHHHHHHTTCEEEEECSCCSCHHHHH T ss_pred CCCCCH------HHHHHHHHHCCCEEEEEECCCHHHHHHC T ss_conf 999659------9999999987995999965707777750 No 58 >>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C (A:) Probab=21.00 E-value=17 Score=17.05 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=6.3 Q ss_pred CCEEEECHHHHHHHH Q ss_conf 430443223447776 Q gi|254780397|r 115 ALAIVTNPIAKFLLY 129 (343) Q Consensus 115 ~~alVT~PInK~~l~ 129 (343) +++.++=|++.+.+. T Consensus 99 ~~~~L~KP~~~~~L~ 113 (122) T 3gl9_A 99 ARKVMRKPFSPSQFI 113 (122) T ss_dssp CSEEEESSCCHHHHH T ss_pred CCEEEECCCCHHHHH T ss_conf 988998989999999 No 59 >>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus HB8} (A:1-327) Probab=20.72 E-value=57 Score=13.82 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=32.8 Q ss_pred CCEEEEEEECCC------CCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-----CCCCCHHHEECCCCCCCCEEEE Q ss_conf 670799963665------445310000121024458886421587643-----4555112100022366768999 Q gi|254780397|r 207 NPRIAISGLNPH------AGENATIGIEEKNIIIPAITYLRNDNKNII-----GPLPADSMFHHSARQCYDVAIC 270 (343) Q Consensus 207 ~PkIaV~gLNPH------AGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-----GP~paDt~F~~~~~~~~D~vla 270 (343) .-||||.|+--- +.+.+.-...+.+.+..+++++++++.++. ..+..|....+. ....|.+++ T Consensus 163 G~kI~~iG~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~vIvl~H~G~~~~~~~~~~-~~~~d~~~~ 236 (327) T 2z1a_A 163 GERVGIIGLTTPDTREISNPGPTVAFLDPYESAQKAVYELLAKGVNKIVVLSHLGYGEDLKLARR-LVGVQVIVG 236 (327) T ss_dssp TEEEEEEEEECTTHHHHSCCCTTCEECCHHHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHTT-CSSCCEEEE T ss_pred CEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH-CCCCCCCCC T ss_conf 74887843336763333466750586547899999999976166677999604682789999984-878652236 Done!