HHSEARCH alignment of GI: 254780397 and SCOP domain: d1vi1a_

Alignment
>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Bacillus subtilis [TaxId: 1423]}
Probab=98.49  E-value=3.4e-06  Score=54.85  Aligned_cols=268  Identities=15%  Similarity=0.175  Sum_probs=151.7

Q ss_pred             CCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCC
Q ss_conf             83899-71898774789999984285-23248989999399999999998189974475386101112678537610333
Q gi|254780397|r    5 LPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPC   82 (343)
Q Consensus         5 ~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~   82 (343)
                      .+|+| .||  .-=||+.+++....- +......++++||.+.++......                  +..+.+++.+.
T Consensus         2 irIAvDaMG--GD~~P~~~v~Ga~~al~~~~~~~i~LvG~~~~i~~~l~~~------------------~~~i~Ivha~~   61 (334)
T d1vi1a_           2 LRIAVDAMG--GDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTT------------------SDRITVLHADE   61 (334)
T ss_dssp             EEEEEESSC--SSSTTHHHHHHHHHHHHHCTTEEEEEEECHHHHHTTCCSC------------------CTTEEEEECCB
T ss_pred             EEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHC------------------CCCEEEECCCC
T ss_conf             599998148--7658288999999999878898699995899999998537------------------36649983887


Q ss_pred             CCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             22001355-31000002467788776643012343044322344777641013256478999983423588665211233
Q gi|254780397|r   83 GAKIVTGT-PNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLS  161 (343)
Q Consensus        83 ~~~~~~G~-~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~  161 (343)
                      .  +.... |+..--+---.|+..|++++++|++||+|.+=-.-..+-.+-+           ..+.-.+...-.++   
T Consensus        62 ~--I~m~d~p~~alr~kk~SSm~~a~~lvk~g~ada~VSaGnTGAl~a~a~~-----------~l~~i~gi~RPaia---  125 (334)
T d1vi1a_          62 V--IEPTDEPVRAVRRKKNSSMVLMAQEVAENRADACISAGNTGALMTAGLF-----------IVGRIKGIDRPALA---  125 (334)
T ss_dssp             C--CCTTSCHHHHHHHCTTBHHHHHHHHHHTTSCSEEEECSCHHHHHHHHHH-----------TTCBCTTCSSCEEE---
T ss_pred             C--CCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH-----------HHHHHCCCCHHHHH---
T ss_conf             3--1588622578884433159999998641455727853675455765876-----------67531243100333---


Q ss_pred             CCCCEEEEECCC-C--CHHHHHHH--CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf             221126653045-3--13334320--102456788898999998531345670799963665445310000121024458
Q gi|254780397|r  162 GPQLRTVPVTIH-I--PIADICRI--LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA  236 (343)
Q Consensus       162 ~~~L~V~l~TtH-i--PLk~V~~~--it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa  236 (343)
                           +.+=|.+ -  =|-|+=.+  .+.+.+.+...+=.-..+..+++++||++++-.    |+.-.-|+|.   +.-|
T Consensus       126 -----~~~Pt~~g~~~vllD~GAN~~~~~~~L~qFA~mG~~ya~~~~~~~~P~VgLLNi----G~E~~KG~~~---~k~a  193 (334)
T d1vi1a_         126 -----PTLPTVSGDGFLLLDVGANVDAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLNV----GTEDKKGNEL---TKQT  193 (334)
T ss_dssp             -----CEECCSSSCCEEEECSSSCSSCCHHHHHHHHHHHHHHHHHTSCCSSCEEEEEES----SSSTTCSCHH---HHHH
T ss_pred             -----EECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC----CCCCCCCCHH---HHHH
T ss_conf             -----017777787628971786767881999999999999999848975434676404----4556664378---9999


Q ss_pred             HHHHHH-CCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHC-------------------------------
Q ss_conf             886421-587643455511210002236676899985120225555414-------------------------------
Q gi|254780397|r  237 ITYLRN-DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLD-------------------------------  284 (343)
Q Consensus       237 I~~~~~-~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~-------------------------------  284 (343)
                      -+.+++ ..++..|.+-++-+|.    ++.|+|||==+ -|-+.+|+..                               
T Consensus       194 ~~lL~~~~~~nf~GniEg~di~~----g~~DVvV~DGF-tGNv~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l  268 (334)
T d1vi1a_         194 FQILKETANINFIGNVEARDLLD----DVADVVVTDGF-TGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKL  268 (334)
T ss_dssp             HHHHHSCTTSEEEEEEEGGGGGG----TSCSEEECCHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCHHHH
T ss_pred             HHHHHHCCCCCEEEEECCEECCC----CCEEEEEECCC-HHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             98753137844266522200247----83689997560-04578776211588999999987612226678888789999


Q ss_pred             ---------CCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------477279992087647558875522213368668389999999999999852
Q gi|254780397|r  285 ---------FNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK  335 (343)
Q Consensus       285 ---------f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~  335 (343)
                               -..+=-.-|||.=+.          |.+.|.++...+.+||++|.++++++
T Consensus       269 ~~l~~~~d~~~~gGa~lLGlng~v----------ik~HG~S~~~ai~nAI~~a~~~v~~~  318 (334)
T d1vi1a_         269 KEMKMKMEYSNYGGASLFGLKAPV----------IKAHGSSDSNAVFRAIRQAREMVSQN  318 (334)
T ss_dssp             HHHHHHHCGGGSCCEEEETBSSCE----------EECCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCE----------EEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             999875790103986897168218----------99279999899999999999999868


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: PlsX-like
domain: Fatty acid/phospholipid synthesis protein PlsX
species: Bacillus subtilis [TaxId: 1423]