HHSEARCH alignment of GI: 254780397 and SCOP domain: d2af4c1

Alignment
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]}
Probab=99.02  E-value=7.2e-09  Score=70.92  Aligned_cols=290  Identities=15%  Similarity=0.118  Sum_probs=171.2

Q ss_pred             CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf             88389971898774789999984285232489899993999999999981899744753861011126785376103332
Q gi|254780397|r    4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG   83 (343)
Q Consensus         4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~   83 (343)
                      .++|++.-|+    -+. +++|.....-...+.||++|++..++..++.++++ .+..+++.+.... ......+   ..
T Consensus        15 ~krIvf~Eg~----D~r-vL~Aa~~~~~~gi~~pILiG~~~~I~~~~~~l~l~-~~~iIdp~~~~~~-~~y~~~~---~~   84 (332)
T d2af4c1          15 NKTIALPETE----DIR-TLQAAAKILERGIADIVLVGNEADIKALAGDLDLS-KAKIVDPKTYEKK-DEYINAF---YE   84 (332)
T ss_dssp             CCEEEECCTT----SHH-HHHHHHHHHHHTSCEEEEESCHHHHHHHHSSCCCT-TSEEECTTSCTTH-HHHHHHH---HH
T ss_pred             CCEEEECCCC----CHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC-CCEEECCCCCCHH-HHHHHHH---HH
T ss_conf             9989986879----989-99999999986990699987999999999858998-6768787421026-7899999---99


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHH-HHHHCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCC
Q ss_conf             20013553100000246778877664301234304432234477-764101325647899998342358-8665211233
Q gi|254780397|r   84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFL-LYQEKFKFPGHTEFLAELAKKNTG-ITFKPVMMLS  161 (343)
Q Consensus        84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~-l~~aG~~f~GhTE~La~~~~~~~~-~~~~~~Mll~  161 (343)
                      ..-.-|..-..+.+...+.+..|+.++..|++|++|+|-++... ......          +.-+...+ .....+++|.
T Consensus        85 ~r~~KG~~~~~A~~~~~~~~~~a~~mV~~G~aD~lv~G~~~~t~~~lr~~l----------~~ig~~~~~~~~s~~~i~~  154 (332)
T d2af4c1          85 LRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAV----------QIVKTAKGAALASAFFIIS  154 (332)
T ss_dssp             HHGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCSHHHHHHHH----------HHTCBSTTCSCCEEEEEEE
T ss_pred             HHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHH----------HEEECCCCCCCCCEEEEEE
T ss_conf             874459999999987400259999999769720034134457388766555----------2010322233465269997


Q ss_pred             C-------CCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHH
Q ss_conf             2-------211266530453133343201024567888989999985313456707999636654453100001210244
Q gi|254780397|r  162 G-------PQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIII  234 (343)
Q Consensus       162 ~-------~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~  234 (343)
                      -       +++ +.+.-+++-.     .=|.+.+.+-+....+..++ ||+..||+|++.    +.|.|.--.|..+...
T Consensus       155 ~p~~~~~~~~~-l~~tD~avn~-----~P~~eqla~Ia~~aa~~~~~-~g~~~PkVAlLS----~s~~gs~~~~~~~~~~  223 (332)
T d2af4c1         155 VPDCEYGSDGT-FLFADSGMVE-----MPSVEDVANIAVISAKTFEL-LVQDVPKVAMLS----YSTKGSAKSKLTEATI  223 (332)
T ss_dssp             CTTCCSTBTTE-EEEETSSSCS-----SCCHHHHHHHHHHHHHHHHH-HHCSCCEEEEEC----SCSTTSCCSHHHHHHH
T ss_pred             CCCCCCCCCCE-EEEECCCCEE-----CCCHHHHHHHHHHHHHHHHH-CCCCCCCEEEEE----ECCCCCCCCCHHHHHH
T ss_conf             03445677863-9984653310-----87689999999999999986-124455056775----1256798772046679


Q ss_pred             HHHHHHHH--CCCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHH-CCCCEEE---EEEE--CC
Q ss_conf             58886421--58764345551121000223----------667689998512022555541-4477279---9920--87
Q gi|254780397|r  235 PAITYLRN--DNKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTL-DFNQTVN---ITLG--LP  296 (343)
Q Consensus       235 PaI~~~~~--~g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l-~f~~~Vn---~t~G--Lp  296 (343)
                      -|.+.+++  .++.|+||+..|.++.+..+          ++-|+.|.=-=|-|-|..|++ .|.++..   +-.|  -|
T Consensus       224 ~a~~~~~~~~~~~~vdGemq~D~Al~~~~a~~k~~~s~v~G~AnvLIfPnl~agNi~yK~l~~~~~a~~~Gpil~G~~~P  303 (332)
T d2af4c1         224 ASTKLAQELAPDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPITQGLAKP  303 (332)
T ss_dssp             HHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHHHTSCCEEEEEEEESBSSC
T ss_pred             HHHHHHHHHCCCCEECCCHHHHHCCCHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEECCHHHCCCCC
T ss_conf             99999860488922415202422138877874189997789899899488178689999999843984875043268998


Q ss_pred             EEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             6475588755222133686683899999999999998520
Q gi|254780397|r  297 FVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKN  336 (343)
Q Consensus       297 ~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~  336 (343)
                      +.-+|..            ++.+..++.+-+|+-.|..++
T Consensus       304 v~~~sR~------------~s~~~i~~~~alaa~~A~~~~  331 (332)
T d2af4c1         304 INDLSRG------------CSDEDIVGAVAITCVQAAAQD  331 (332)
T ss_dssp             EEECCTT------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCC------------CCHHHHHHHHHHHHHHHHHHC
T ss_conf             7878999------------998999999999999987403


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Phosphotransacetylase
domain: Phosphotransacetylase Pta
species: Methanosarcina thermophila [TaxId: 2210]