RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >gnl|CDD|180008 PRK05312, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional. Length = 336 Score = 500 bits (1291), Expect = e-142 Identities = 187/328 (57%), Positives = 239/328 (72%), Gaps = 1/328 (0%) Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYE-TDC 64 PL L+ GDPAGIGP+I+LKAW R+ +PPF IGD VL ARA+ L L VP+ E TD Sbjct: 5 PLALSLGDPAGIGPEIALKAWLRRRELGLPPFFLIGDPAVLAARARLLGLDVPVAEVTDP 64 Query: 65 KNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124 + A ++F ALP++ P A +V G P+P A+ IA IE+AV L LSG+A A+VT PIA Sbjct: 65 EEAAAVFADALPVLPLPFPAPVVPGQPDPANAAGVIAAIERAVGLVLSGEAAAVVTAPIA 124 Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184 K +LY F FPGHTEFLAELA TG +PVMML+GPQLR VPVTIHIP+ D+ L+ Sbjct: 125 KKVLYDAGFAFPGHTEFLAELAGVATGKPVQPVMMLAGPQLRVVPVTIHIPLRDVPAALT 184 Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244 + I+ T+ +++ FGI +PR+A++GLNPHAGE +G E+ +II PAI LR + Sbjct: 185 PELIVATARITAADLRRRFGIASPRLAVAGLNPHAGEGGALGREDIDIIAPAIEQLRAEG 244 Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 + GPLPAD+MFH +AR YD AICMYHDQALIPIKTLDF+ VN+TLGLPF+RTSPDH Sbjct: 245 IDARGPLPADTMFHAAARATYDAAICMYHDQALIPIKTLDFDGGVNVTLGLPFIRTSPDH 304 Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLG 332 GTAFDIAG + + +SL++AL++AAQ+ Sbjct: 305 GTAFDIAGKGIARPDSLIAALRLAAQMA 332 >gnl|CDD|161928 TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis. Length = 320 Score = 424 bits (1094), Expect = e-119 Identities = 152/326 (46%), Positives = 207/326 (63%), Gaps = 7/326 (2%) Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65 + +T GDPAGIGP+I LKA A + P + IGD +L ARAK L L + + Sbjct: 1 RIAITLGDPAGIGPEIILKALAQLA--ELCPPVVIGDPALLEARAKLLGLLPLVDIDAPE 58 Query: 66 NAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAK 125 +A + F ALP++ P A + G P+P + +E+AV L L+G+A A+VT PI K Sbjct: 59 DAAAAFPGALPVLPVPLAAPVTPGKPDPANGAYVFETLERAVELCLAGEADALVTAPIHK 118 Query: 126 FLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILST 185 + Q F FPGHTEFLAEL VMML+GP LR T HIP+ D+ L+ Sbjct: 119 GAINQAGFPFPGHTEFLAELTGVK-----DVVMMLAGPGLRVALATTHIPLKDVPAALTP 173 Query: 186 KRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNK 245 + ++E ++ +++ FGI PRIA++GLNPHAGE +G EE +IIIPA+ LR + Sbjct: 174 ELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEGI 233 Query: 246 NIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHG 305 ++IGPLPAD++FH +A YD + MYHDQ LIP+K L F++ VN+TLGLPF+RTSPDHG Sbjct: 234 DLIGPLPADTLFHPAALAKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHG 293 Query: 306 TAFDIAGSSLTQEESLVSALKIAAQL 331 TAFDIAG SL++A+K+A +L Sbjct: 294 TAFDIAGKGKADPGSLIAAIKLAIEL 319 >gnl|CDD|178940 PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed. Length = 332 Score = 297 bits (763), Expect = 2e-81 Identities = 123/335 (36%), Positives = 178/335 (53%), Gaps = 8/335 (2%) Query: 5 LPLI-LTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETD 63 P I +T GDPAGIGP++ K A + + I D +L RA L L + L Sbjct: 4 KPRIAITPGDPAGIGPELVAKLLAQPDVRWPAELVVIADRALLERRAAILGLPLDLRPYS 63 Query: 64 CKNAVSIFK-KALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122 + L ++ P +V G + + + +A+ L+G+ AI T P Sbjct: 64 PDAPAQPQEAGTLTVLPVPLAPAVVAGQLDAANGRYVLETLARALDGCLAGEFDAICTAP 123 Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182 + K + F GHTEF AEL +G T VMML+ LR VT H+P+ D+ Sbjct: 124 VNKGAINDAGIPFSGHTEFFAEL----SGTT-GVVMMLATEGLRVALVTTHLPLRDVADA 178 Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242 ++ +R+ E ++ +++ GI PRIA+ GLNPHAGE G EE +IIIPA+ LR Sbjct: 179 ITPERLEEVIRILHADLRRK-GIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPALEELRA 237 Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302 + N++GPLPAD++F + D + MYHDQ L +K L F + VNITLGLPF+RTS Sbjct: 238 EGINLVGPLPADTLFQPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSV 297 Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNL 337 DHGTA D+AG + S ++AL +A ++ + Sbjct: 298 DHGTALDLAGKGIADVGSFITALNLAIRMAANRRE 332 >gnl|CDD|179467 PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional. Length = 345 Score = 287 bits (736), Expect = 4e-78 Identities = 128/340 (37%), Positives = 195/340 (57%), Gaps = 19/340 (5%) Query: 7 LILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKN 66 L +T GDPAGIGP++ LKA AS ++ +G +L ++L D N Sbjct: 12 LAITLGDPAGIGPEVILKALASPELPENCQPTLVGCRSLLEQTYQRLKSQGIEPLADPAN 71 Query: 67 AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKF 126 L I+ P + I+ G N + +++ A + A+ +TL+G+ AIVT PIAK Sbjct: 72 --------LDILDIPLDSTIIPGKGNAASGAASFAYLTTAIEITLAGEFDAIVTAPIAKS 123 Query: 127 LLYQEKFKFPGHTEFLAELAK-KNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILST 185 + +PG TE LAELA + G+ F +G +LRT+ T HIP+ + + L+ Sbjct: 124 AWHAAGHHYPGQTEVLAELAGVERFGMLFTARSPHTGWRLRTLLATTHIPLCQVPKTLTP 183 Query: 186 KRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNK 245 + I D + + +++ FGI PRIAI+GLNPHAGE +G EEK+ +IP + R N Sbjct: 184 ELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGEQGQLGTEEKDWLIPWLESWRQKNP 243 Query: 246 NI--IGPLPADSMFHHSAR--------QCYDVAICMYHDQALIPIKTLDFNQTVNITLGL 295 +I +GP+P D+ + A+ + D + +YHDQ LIP+K + F++ VN T+GL Sbjct: 244 DIQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLALYHDQGLIPVKLMAFDRAVNTTIGL 303 Query: 296 PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK 335 PF+RTSPDHGTAFDIAG + + +S+ +A+K+A +L Q+ Sbjct: 304 PFIRTSPDHGTAFDIAGKGIARPQSMKAAIKLAWELSKQR 343 >gnl|CDD|179641 PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Validated. Length = 332 Score = 231 bits (591), Expect = 2e-61 Identities = 115/328 (35%), Positives = 172/328 (52%), Gaps = 9/328 (2%) Query: 6 PLI-LTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64 P+I + GDPAGIGP+I +K A +++ IGD V+ K + + + + Sbjct: 4 PIIAIPIGDPAGIGPEIVVKTLADKEVYDECKPFLIGDAPVIERAMKICGVDLNINKIKK 63 Query: 65 KNAVSIFKKALPIISSPC--GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122 + +I I G + I+K+V L + G+ A+ T P Sbjct: 64 PAEGKFEWGTIDLIDLGNYDCDSIKWGKVQALAGKAAFEYIKKSVELAMEGKVDAVATTP 123 Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182 I K L K+ GHTE LA+L +T M LR +T H+ + C Sbjct: 124 INKEALKAAGVKYIGHTEILADLTGTEDPLT-----MFEVRNLRVFFLTRHVSLKKACDY 178 Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242 ++ +R+++ A++K GI NP+IA++GLNPH+GE+ G EE + IIPA+ + Sbjct: 179 VTKERVLDYIQRCTKALEK-LGIKNPKIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQE 237 Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302 N+ GP+PADS+FH + + YD + +YHDQ I KTLDF +T+ IT GLPF+RTS Sbjct: 238 MGINVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSV 297 Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQ 330 DHGTAFDIAG+ S+ A+ +AA+ Sbjct: 298 DHGTAFDIAGTGKASSVSMEEAILLAAK 325 >gnl|CDD|179351 PRK01909, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Validated. Length = 329 Score = 217 bits (554), Expect = 4e-57 Identities = 108/335 (32%), Positives = 172/335 (51%), Gaps = 18/335 (5%) Query: 1 MDEFLPLILTQGDPAGIGPDISLKA-WASRQITAIPPFIYIGDVDVLNARAKQLNLSVPL 59 + L + +T G+PAG+GP+++++A + F +GD +L ARA + Sbjct: 2 TPQPLQIAITTGEPAGVGPELTVRALADAAARWPDARFTVLGDAALLAARAAAVGADW-- 59 Query: 60 YETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIV 119 A + + P A G + + ++ A+ L+G+ AIV Sbjct: 60 -------ARLAAGGHVTVAHRPLAAPAEAGKLDAANGRYVLDLLDAAIDGALAGRYDAIV 112 Query: 120 TNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSG--PQ-LRTVPVTIHIPI 176 T P+ K + F GHTE+LAE T + VMML+G P+ LR T H+P+ Sbjct: 113 TAPLQKSTINDAGVPFTGHTEYLAERTH-----TPRVVMMLAGTGPRPLRVALATTHLPL 167 Query: 177 ADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA 236 D+ L+ ++ET + +++ FG+ PRI ++GLNPHAGEN +G EE ++I PA Sbjct: 168 KDVSAALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDVIEPA 227 Query: 237 ITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLP 296 + R + GP PAD++F + D + M+HDQ L +K F + +N+TLGLP Sbjct: 228 LARARAAGIDARGPYPADTLFQPRYLEDADCVLAMFHDQGLPVLKYATFGEGINVTLGLP 287 Query: 297 FVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 +RTS DHGTA D+AG+ S+++A+ A + Sbjct: 288 IIRTSVDHGTALDLAGTGRADPGSMIAAIDTAVTM 322 >gnl|CDD|179572 PRK03371, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional. Length = 326 Score = 200 bits (510), Expect = 4e-52 Identities = 115/327 (35%), Positives = 168/327 (51%), Gaps = 12/327 (3%) Query: 9 LTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLS--VPLYETDCKN 66 +T GDPAGIGP+I +K+ + + P + +G + L R ++ V L + Sbjct: 7 VTMGDPAGIGPEIIIKSLSEGGLNG-APLVVVGCLATLR-RILAKGITPQVELRAIERVA 64 Query: 67 AVSIFKKALPIISSPCG--AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124 + +I P + G Q +++A L L G+ AI T P+ Sbjct: 65 EARFAPGIINVIDEPLAQPEALEPGVVQAQAGDLAYRCVKRATELALRGEVQAIATAPLN 124 Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184 K L+ +PGHTE LA L + M+L +L+ + V+ HI + L+ Sbjct: 125 KEALHLAGHNYPGHTELLATLTH-----SRDYAMVLYTDKLKVIHVSTHIALRKFLDTLN 179 Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244 T R+ ET + + K G PRIA++G+NPHAGEN G EE I+ PAI +R Sbjct: 180 TARV-ETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMRAKG 238 Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 ++ GP P D++F + YD+ + MYHDQ IP+K L F VNIT GLPF+RTS DH Sbjct: 239 MDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADH 298 Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQL 331 GTAFDIA + + ES+ ++K+A QL Sbjct: 299 GTAFDIAWTGKAKSESMAVSIKLAMQL 325 >gnl|CDD|179681 PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional. Length = 307 Score = 182 bits (465), Expect = 8e-47 Identities = 107/329 (32%), Positives = 168/329 (51%), Gaps = 35/329 (10%) Query: 12 GDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIF 71 GD GIG +I+LK+ +++ I +Y + ++L AK LNL P D + Sbjct: 9 GDINGIGLEIALKS--HDEVSKICEPLYCINEELLEQAAKLLNLKTPN---DFE------ 57 Query: 72 KKALPIISSPCGA--KIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLY 129 I P G +I G + ++ + + + +KAV L S + AIVT PI K Sbjct: 58 ------IDFPVGLLFEIKPGKVSAKSGAYSFESFKKAVELADSKEVDAIVTLPINKKAWQ 111 Query: 130 QEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRII 189 + + GHT+ L + KK +MML +L T HIP+ + +++ K+++ Sbjct: 112 KAGIPYKGHTDALRDRFKKEA------IMMLGCEELFVALFTDHIPLKKVSQLIKVKKLV 165 Query: 190 ETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN--DNKNI 247 + Y + K +I + GLNPHAG+N IG EE+ I AI + Sbjct: 166 KFLLDFYKSTK------FKKIGVLGLNPHAGDNGVIGGEEE-EIKKAIKKANQFLGFEIF 218 Query: 248 IGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTA 307 GPL DS F + R+ ++ + MYHDQ L P+K L F++++N++L LP +RTS DHGTA Sbjct: 219 FGPLVPDSAFTPNKRKKFNYYVAMYHDQGLAPLKALYFDESINVSLNLPILRTSVDHGTA 278 Query: 308 FDIA-GSSLTQEESLVSALKIAAQLGYQK 335 FDIA ++ +S ++A+K A L +K Sbjct: 279 FDIAYKNAKANTKSYLNAIKYAINLLSKK 307 >gnl|CDD|184111 PRK13524, PRK13524, outer membrane receptor FepA; Provisional. Length = 744 Score = 28.5 bits (64), Expect = 2.6 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 222 NATIGIE-EKNIIIPAITYLRNDNKNIIG 249 N IG+E +++ + +T+ RND +N I Sbjct: 533 NKEIGLEFKRDGWLAGLTWFRNDYRNKIE 561 >gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 377 Score = 28.3 bits (63), Expect = 2.8 Identities = 11/41 (26%), Positives = 14/41 (34%) Query: 87 VTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFL 127 GT + +E L LA VTN I F+ Sbjct: 46 RRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFV 86 >gnl|CDD|184282 PRK13730, PRK13730, conjugal transfer pilus assembly protein TrbC; Provisional. Length = 212 Score = 27.9 bits (62), Expect = 4.3 Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 19 PDISLKAWASRQITAIP 35 PD LKAWA +Q+ P Sbjct: 48 PDHQLKAWAEKQVLENP 64 >gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional. Length = 2836 Score = 27.7 bits (61), Expect = 4.6 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 18/155 (11%) Query: 96 ASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFK 155 S+ +A++E S+ L A + NP+ K LL + E + E K I Sbjct: 2249 GSTIVASLE---SVVLGRTAANDIYNPVTKELLVKAG-------ELIDEDKVKQINIAGL 2298 Query: 156 PVMMLSGPQLRTVPVTIHIPIADIC--RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS 213 V+ + P + I + +C R L+T +I+ + V + G P ++ Sbjct: 2299 DVVKIRSP----LTCEISPGVCSLCYGRDLATGKIVSIGEAVGVIAAQSVG--EPGTQLT 2352 Query: 214 GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII 248 H G T G+E NII ++ +N NII Sbjct: 2353 MRTFHIGGVMTRGVESSNIIASINAKIKLNNSNII 2387 >gnl|CDD|167169 PRK01160, PRK01160, hypothetical protein; Provisional. Length = 178 Score = 27.4 bits (61), Expect = 5.4 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 17 IGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALP 76 + DI ++ P I +GDV N L + +Y+ K ++ P Sbjct: 23 VRGDIPEPYLKIKEELEKHPLITVGDVVTENLLRVGLKPFLAIYDLKTKR-----REYKP 77 Query: 77 IISSPCGAKIVTGTPNPQTAS-STIANIEKAVSLTLSGQALAIVTN 121 I I P P T + + + I+KA SL G+ + I N Sbjct: 78 SIFEHEEVSITVRNP-PGTITLALLRAIKKAFSLIERGKKVRIEVN 122 >gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase. Length = 401 Score = 27.4 bits (61), Expect = 6.3 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%) Query: 189 IETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGI 227 I++++ V NA KKY N + + GLN AG+ IG Sbjct: 317 IDSAEIVKNAWKKY----NLSLGL-GLNKVAGKVFRIGH 350 >gnl|CDD|183013 PRK11173, PRK11173, two-component response regulator; Provisional. Length = 237 Score = 26.9 bits (60), Expect = 7.2 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 7/37 (18%) Query: 136 PGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTI 172 PG + AEL KK TG KP RTV VTI Sbjct: 176 PGKIQSRAELLKKMTGRELKP-------HDRTVDVTI 205 >gnl|CDD|151777 pfam11336, DUF3138, Protein of unknown function (DUF3138). This family of proteins with unknown function appear to be restricted to Proteobacteria. Length = 514 Score = 26.8 bits (59), Expect = 7.5 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Query: 287 QTVNITLGLPFVRTSP--------DH--GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 T N LG P +++ D+ +A D+ GS ++L SA A GY N Sbjct: 282 NTGNNALGNPITKSNKTPTFTARVDYTWSSALDLGGSFNIGRQTLFSACAQAGGYGYGCN 341 >gnl|CDD|179904 PRK04968, PRK04968, SecY interacting protein Syd; Provisional. Length = 181 Score = 27.2 bits (61), Expect = 7.6 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%) Query: 78 ISSPC----GAKIVTGTPNPQTASSTIANIEKAVSLTL 111 + SPC V P P N+E+A+ +TL Sbjct: 34 VPSPCIIETSEDAVYWQPQPFEPEGNFNNVERALEITL 71 >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional. Length = 699 Score = 27.0 bits (59), Expect = 8.2 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 128 LYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKR 187 L ++KFK +EF A F + ++ PQLR VP ++ + Sbjct: 166 LLKDKFKL---SEFTKNFANCYAEPIFTNISHINNPQLRNVPWSVSTGTEQKLSSEQQRL 222 Query: 188 IIETSDTVYNAMKK 201 I T+YN + + Sbjct: 223 IHNPMTTIYNTLTR 236 >gnl|CDD|115278 pfam06608, DUF1143, Protein of unknown function (DUF1143). This family consists of several hypothetical mammalian proteins (from mouse and human). The function of this family is unknown. Length = 149 Score = 27.0 bits (59), Expect = 8.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 241 RNDNKNIIGPLPADSMFHHSARQCYD 266 R D KNI+ P P S F H+ YD Sbjct: 76 RYDLKNIVKPKPLPSQFGHAFETTYD 101 >gnl|CDD|184115 PRK13528, PRK13528, outer membrane receptor FepA; Provisional. Length = 727 Score = 26.6 bits (59), Expect = 9.6 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 215 LNPHAGENATIGIE-EKNIIIPAITYLRNDNKNII 248 L+P N IG+E + ++TY RND +N I Sbjct: 519 LDPEISVNKEIGLEFTVDDYHASVTYFRNDYQNKI 553 >gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase; Provisional. Length = 320 Score = 26.5 bits (58), Expect = 9.7 Identities = 11/28 (39%), Positives = 20/28 (71%) Query: 300 TSPDHGTAFDIAGSSLTQEESLVSALKI 327 ++P++ FD AGS +T +ESL+ + +I Sbjct: 270 SAPNYCGEFDNAGSMMTIDESLMCSFQI 297 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0676 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,581,692 Number of extensions: 357723 Number of successful extensions: 674 Number of sequences better than 10.0: 1 Number of HSP's gapped: 647 Number of HSP's successfully gapped: 29 Length of query: 343 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 249 Effective length of database: 3,963,321 Effective search space: 986866929 Effective search space used: 986866929 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.8 bits)