RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(343 letters)
>gnl|CDD|180008 PRK05312, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 500 bits (1291), Expect = e-142
Identities = 187/328 (57%), Positives = 239/328 (72%), Gaps = 1/328 (0%)
Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYE-TDC 64
PL L+ GDPAGIGP+I+LKAW R+ +PPF IGD VL ARA+ L L VP+ E TD
Sbjct: 5 PLALSLGDPAGIGPEIALKAWLRRRELGLPPFFLIGDPAVLAARARLLGLDVPVAEVTDP 64
Query: 65 KNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124
+ A ++F ALP++ P A +V G P+P A+ IA IE+AV L LSG+A A+VT PIA
Sbjct: 65 EEAAAVFADALPVLPLPFPAPVVPGQPDPANAAGVIAAIERAVGLVLSGEAAAVVTAPIA 124
Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184
K +LY F FPGHTEFLAELA TG +PVMML+GPQLR VPVTIHIP+ D+ L+
Sbjct: 125 KKVLYDAGFAFPGHTEFLAELAGVATGKPVQPVMMLAGPQLRVVPVTIHIPLRDVPAALT 184
Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244
+ I+ T+ +++ FGI +PR+A++GLNPHAGE +G E+ +II PAI LR +
Sbjct: 185 PELIVATARITAADLRRRFGIASPRLAVAGLNPHAGEGGALGREDIDIIAPAIEQLRAEG 244
Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304
+ GPLPAD+MFH +AR YD AICMYHDQALIPIKTLDF+ VN+TLGLPF+RTSPDH
Sbjct: 245 IDARGPLPADTMFHAAARATYDAAICMYHDQALIPIKTLDFDGGVNVTLGLPFIRTSPDH 304
Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLG 332
GTAFDIAG + + +SL++AL++AAQ+
Sbjct: 305 GTAFDIAGKGIARPDSLIAALRLAAQMA 332
>gnl|CDD|161928 TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase.
This model represents PdxA, an NAD+-dependent
4-hydroxythreonine 4-phosphate dehydrogenase (EC
1.1.1.262) active in pyridoxal phosphate biosynthesis.
Length = 320
Score = 424 bits (1094), Expect = e-119
Identities = 152/326 (46%), Positives = 207/326 (63%), Gaps = 7/326 (2%)
Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65
+ +T GDPAGIGP+I LKA A + P + IGD +L ARAK L L + +
Sbjct: 1 RIAITLGDPAGIGPEIILKALAQLA--ELCPPVVIGDPALLEARAKLLGLLPLVDIDAPE 58
Query: 66 NAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAK 125
+A + F ALP++ P A + G P+P + +E+AV L L+G+A A+VT PI K
Sbjct: 59 DAAAAFPGALPVLPVPLAAPVTPGKPDPANGAYVFETLERAVELCLAGEADALVTAPIHK 118
Query: 126 FLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILST 185
+ Q F FPGHTEFLAEL VMML+GP LR T HIP+ D+ L+
Sbjct: 119 GAINQAGFPFPGHTEFLAELTGVK-----DVVMMLAGPGLRVALATTHIPLKDVPAALTP 173
Query: 186 KRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNK 245
+ ++E ++ +++ FGI PRIA++GLNPHAGE +G EE +IIIPA+ LR +
Sbjct: 174 ELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEGI 233
Query: 246 NIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHG 305
++IGPLPAD++FH +A YD + MYHDQ LIP+K L F++ VN+TLGLPF+RTSPDHG
Sbjct: 234 DLIGPLPADTLFHPAALAKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHG 293
Query: 306 TAFDIAGSSLTQEESLVSALKIAAQL 331
TAFDIAG SL++A+K+A +L
Sbjct: 294 TAFDIAGKGKADPGSLIAAIKLAIEL 319
>gnl|CDD|178940 PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed.
Length = 332
Score = 297 bits (763), Expect = 2e-81
Identities = 123/335 (36%), Positives = 178/335 (53%), Gaps = 8/335 (2%)
Query: 5 LPLI-LTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETD 63
P I +T GDPAGIGP++ K A + + I D +L RA L L + L
Sbjct: 4 KPRIAITPGDPAGIGPELVAKLLAQPDVRWPAELVVIADRALLERRAAILGLPLDLRPYS 63
Query: 64 CKNAVSIFK-KALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122
+ L ++ P +V G + + + +A+ L+G+ AI T P
Sbjct: 64 PDAPAQPQEAGTLTVLPVPLAPAVVAGQLDAANGRYVLETLARALDGCLAGEFDAICTAP 123
Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182
+ K + F GHTEF AEL +G T VMML+ LR VT H+P+ D+
Sbjct: 124 VNKGAINDAGIPFSGHTEFFAEL----SGTT-GVVMMLATEGLRVALVTTHLPLRDVADA 178
Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242
++ +R+ E ++ +++ GI PRIA+ GLNPHAGE G EE +IIIPA+ LR
Sbjct: 179 ITPERLEEVIRILHADLRRK-GIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPALEELRA 237
Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302
+ N++GPLPAD++F + D + MYHDQ L +K L F + VNITLGLPF+RTS
Sbjct: 238 EGINLVGPLPADTLFQPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSV 297
Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNL 337
DHGTA D+AG + S ++AL +A ++ +
Sbjct: 298 DHGTALDLAGKGIADVGSFITALNLAIRMAANRRE 332
>gnl|CDD|179467 PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Provisional.
Length = 345
Score = 287 bits (736), Expect = 4e-78
Identities = 128/340 (37%), Positives = 195/340 (57%), Gaps = 19/340 (5%)
Query: 7 LILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKN 66
L +T GDPAGIGP++ LKA AS ++ +G +L ++L D N
Sbjct: 12 LAITLGDPAGIGPEVILKALASPELPENCQPTLVGCRSLLEQTYQRLKSQGIEPLADPAN 71
Query: 67 AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKF 126
L I+ P + I+ G N + +++ A + A+ +TL+G+ AIVT PIAK
Sbjct: 72 --------LDILDIPLDSTIIPGKGNAASGAASFAYLTTAIEITLAGEFDAIVTAPIAKS 123
Query: 127 LLYQEKFKFPGHTEFLAELAK-KNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILST 185
+ +PG TE LAELA + G+ F +G +LRT+ T HIP+ + + L+
Sbjct: 124 AWHAAGHHYPGQTEVLAELAGVERFGMLFTARSPHTGWRLRTLLATTHIPLCQVPKTLTP 183
Query: 186 KRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNK 245
+ I D + + +++ FGI PRIAI+GLNPHAGE +G EEK+ +IP + R N
Sbjct: 184 ELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGEQGQLGTEEKDWLIPWLESWRQKNP 243
Query: 246 NI--IGPLPADSMFHHSAR--------QCYDVAICMYHDQALIPIKTLDFNQTVNITLGL 295
+I +GP+P D+ + A+ + D + +YHDQ LIP+K + F++ VN T+GL
Sbjct: 244 DIQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLALYHDQGLIPVKLMAFDRAVNTTIGL 303
Query: 296 PFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK 335
PF+RTSPDHGTAFDIAG + + +S+ +A+K+A +L Q+
Sbjct: 304 PFIRTSPDHGTAFDIAGKGIARPQSMKAAIKLAWELSKQR 343
>gnl|CDD|179641 PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Validated.
Length = 332
Score = 231 bits (591), Expect = 2e-61
Identities = 115/328 (35%), Positives = 172/328 (52%), Gaps = 9/328 (2%)
Query: 6 PLI-LTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64
P+I + GDPAGIGP+I +K A +++ IGD V+ K + + + +
Sbjct: 4 PIIAIPIGDPAGIGPEIVVKTLADKEVYDECKPFLIGDAPVIERAMKICGVDLNINKIKK 63
Query: 65 KNAVSIFKKALPIISSPC--GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122
+ +I I G + I+K+V L + G+ A+ T P
Sbjct: 64 PAEGKFEWGTIDLIDLGNYDCDSIKWGKVQALAGKAAFEYIKKSVELAMEGKVDAVATTP 123
Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182
I K L K+ GHTE LA+L +T M LR +T H+ + C
Sbjct: 124 INKEALKAAGVKYIGHTEILADLTGTEDPLT-----MFEVRNLRVFFLTRHVSLKKACDY 178
Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242
++ +R+++ A++K GI NP+IA++GLNPH+GE+ G EE + IIPA+ +
Sbjct: 179 VTKERVLDYIQRCTKALEK-LGIKNPKIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQE 237
Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302
N+ GP+PADS+FH + + YD + +YHDQ I KTLDF +T+ IT GLPF+RTS
Sbjct: 238 MGINVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSV 297
Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQ 330
DHGTAFDIAG+ S+ A+ +AA+
Sbjct: 298 DHGTAFDIAGTGKASSVSMEEAILLAAK 325
>gnl|CDD|179351 PRK01909, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Validated.
Length = 329
Score = 217 bits (554), Expect = 4e-57
Identities = 108/335 (32%), Positives = 172/335 (51%), Gaps = 18/335 (5%)
Query: 1 MDEFLPLILTQGDPAGIGPDISLKA-WASRQITAIPPFIYIGDVDVLNARAKQLNLSVPL 59
+ L + +T G+PAG+GP+++++A + F +GD +L ARA +
Sbjct: 2 TPQPLQIAITTGEPAGVGPELTVRALADAAARWPDARFTVLGDAALLAARAAAVGADW-- 59
Query: 60 YETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIV 119
A + + P A G + + ++ A+ L+G+ AIV
Sbjct: 60 -------ARLAAGGHVTVAHRPLAAPAEAGKLDAANGRYVLDLLDAAIDGALAGRYDAIV 112
Query: 120 TNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSG--PQ-LRTVPVTIHIPI 176
T P+ K + F GHTE+LAE T + VMML+G P+ LR T H+P+
Sbjct: 113 TAPLQKSTINDAGVPFTGHTEYLAERTH-----TPRVVMMLAGTGPRPLRVALATTHLPL 167
Query: 177 ADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA 236
D+ L+ ++ET + +++ FG+ PRI ++GLNPHAGEN +G EE ++I PA
Sbjct: 168 KDVSAALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDVIEPA 227
Query: 237 ITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLP 296
+ R + GP PAD++F + D + M+HDQ L +K F + +N+TLGLP
Sbjct: 228 LARARAAGIDARGPYPADTLFQPRYLEDADCVLAMFHDQGLPVLKYATFGEGINVTLGLP 287
Query: 297 FVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331
+RTS DHGTA D+AG+ S+++A+ A +
Sbjct: 288 IIRTSVDHGTALDLAGTGRADPGSMIAAIDTAVTM 322
>gnl|CDD|179572 PRK03371, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase 2;
Provisional.
Length = 326
Score = 200 bits (510), Expect = 4e-52
Identities = 115/327 (35%), Positives = 168/327 (51%), Gaps = 12/327 (3%)
Query: 9 LTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLS--VPLYETDCKN 66
+T GDPAGIGP+I +K+ + + P + +G + L R ++ V L +
Sbjct: 7 VTMGDPAGIGPEIIIKSLSEGGLNG-APLVVVGCLATLR-RILAKGITPQVELRAIERVA 64
Query: 67 AVSIFKKALPIISSPCG--AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124
+ +I P + G Q +++A L L G+ AI T P+
Sbjct: 65 EARFAPGIINVIDEPLAQPEALEPGVVQAQAGDLAYRCVKRATELALRGEVQAIATAPLN 124
Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184
K L+ +PGHTE LA L + M+L +L+ + V+ HI + L+
Sbjct: 125 KEALHLAGHNYPGHTELLATLTH-----SRDYAMVLYTDKLKVIHVSTHIALRKFLDTLN 179
Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244
T R+ ET + + K G PRIA++G+NPHAGEN G EE I+ PAI +R
Sbjct: 180 TARV-ETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMRAKG 238
Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304
++ GP P D++F + YD+ + MYHDQ IP+K L F VNIT GLPF+RTS DH
Sbjct: 239 MDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADH 298
Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQL 331
GTAFDIA + + ES+ ++K+A QL
Sbjct: 299 GTAFDIAWTGKAKSESMAVSIKLAMQL 325
>gnl|CDD|179681 PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Provisional.
Length = 307
Score = 182 bits (465), Expect = 8e-47
Identities = 107/329 (32%), Positives = 168/329 (51%), Gaps = 35/329 (10%)
Query: 12 GDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIF 71
GD GIG +I+LK+ +++ I +Y + ++L AK LNL P D +
Sbjct: 9 GDINGIGLEIALKS--HDEVSKICEPLYCINEELLEQAAKLLNLKTPN---DFE------ 57
Query: 72 KKALPIISSPCGA--KIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLY 129
I P G +I G + ++ + + + +KAV L S + AIVT PI K
Sbjct: 58 ------IDFPVGLLFEIKPGKVSAKSGAYSFESFKKAVELADSKEVDAIVTLPINKKAWQ 111
Query: 130 QEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRII 189
+ + GHT+ L + KK +MML +L T HIP+ + +++ K+++
Sbjct: 112 KAGIPYKGHTDALRDRFKKEA------IMMLGCEELFVALFTDHIPLKKVSQLIKVKKLV 165
Query: 190 ETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN--DNKNI 247
+ Y + K +I + GLNPHAG+N IG EE+ I AI +
Sbjct: 166 KFLLDFYKSTK------FKKIGVLGLNPHAGDNGVIGGEEE-EIKKAIKKANQFLGFEIF 218
Query: 248 IGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTA 307
GPL DS F + R+ ++ + MYHDQ L P+K L F++++N++L LP +RTS DHGTA
Sbjct: 219 FGPLVPDSAFTPNKRKKFNYYVAMYHDQGLAPLKALYFDESINVSLNLPILRTSVDHGTA 278
Query: 308 FDIA-GSSLTQEESLVSALKIAAQLGYQK 335
FDIA ++ +S ++A+K A L +K
Sbjct: 279 FDIAYKNAKANTKSYLNAIKYAINLLSKK 307
>gnl|CDD|184111 PRK13524, PRK13524, outer membrane receptor FepA; Provisional.
Length = 744
Score = 28.5 bits (64), Expect = 2.6
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 222 NATIGIE-EKNIIIPAITYLRNDNKNIIG 249
N IG+E +++ + +T+ RND +N I
Sbjct: 533 NKEIGLEFKRDGWLAGLTWFRNDYRNKIE 561
>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys.
Length = 377
Score = 28.3 bits (63), Expect = 2.8
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 87 VTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFL 127
GT + +E L LA VTN I F+
Sbjct: 46 RRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFV 86
>gnl|CDD|184282 PRK13730, PRK13730, conjugal transfer pilus assembly protein
TrbC; Provisional.
Length = 212
Score = 27.9 bits (62), Expect = 4.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 19 PDISLKAWASRQITAIP 35
PD LKAWA +Q+ P
Sbjct: 48 PDHQLKAWAEKQVLENP 64
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 27.7 bits (61), Expect = 4.6
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 96 ASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFK 155
S+ +A++E S+ L A + NP+ K LL + E + E K I
Sbjct: 2249 GSTIVASLE---SVVLGRTAANDIYNPVTKELLVKAG-------ELIDEDKVKQINIAGL 2298
Query: 156 PVMMLSGPQLRTVPVTIHIPIADIC--RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS 213
V+ + P + I + +C R L+T +I+ + V + G P ++
Sbjct: 2299 DVVKIRSP----LTCEISPGVCSLCYGRDLATGKIVSIGEAVGVIAAQSVG--EPGTQLT 2352
Query: 214 GLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII 248
H G T G+E NII ++ +N NII
Sbjct: 2353 MRTFHIGGVMTRGVESSNIIASINAKIKLNNSNII 2387
>gnl|CDD|167169 PRK01160, PRK01160, hypothetical protein; Provisional.
Length = 178
Score = 27.4 bits (61), Expect = 5.4
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 17 IGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALP 76
+ DI ++ P I +GDV N L + +Y+ K ++ P
Sbjct: 23 VRGDIPEPYLKIKEELEKHPLITVGDVVTENLLRVGLKPFLAIYDLKTKR-----REYKP 77
Query: 77 IISSPCGAKIVTGTPNPQTAS-STIANIEKAVSLTLSGQALAIVTN 121
I I P P T + + + I+KA SL G+ + I N
Sbjct: 78 SIFEHEEVSITVRNP-PGTITLALLRAIKKAFSLIERGKKVRIEVN 122
>gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase.
Length = 401
Score = 27.4 bits (61), Expect = 6.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 189 IETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGI 227
I++++ V NA KKY N + + GLN AG+ IG
Sbjct: 317 IDSAEIVKNAWKKY----NLSLGL-GLNKVAGKVFRIGH 350
>gnl|CDD|183013 PRK11173, PRK11173, two-component response regulator; Provisional.
Length = 237
Score = 26.9 bits (60), Expect = 7.2
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 136 PGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTI 172
PG + AEL KK TG KP RTV VTI
Sbjct: 176 PGKIQSRAELLKKMTGRELKP-------HDRTVDVTI 205
>gnl|CDD|151777 pfam11336, DUF3138, Protein of unknown function (DUF3138). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 514
Score = 26.8 bits (59), Expect = 7.5
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 287 QTVNITLGLPFVRTSP--------DH--GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336
T N LG P +++ D+ +A D+ GS ++L SA A GY N
Sbjct: 282 NTGNNALGNPITKSNKTPTFTARVDYTWSSALDLGGSFNIGRQTLFSACAQAGGYGYGCN 341
>gnl|CDD|179904 PRK04968, PRK04968, SecY interacting protein Syd; Provisional.
Length = 181
Score = 27.2 bits (61), Expect = 7.6
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 78 ISSPC----GAKIVTGTPNPQTASSTIANIEKAVSLTL 111
+ SPC V P P N+E+A+ +TL
Sbjct: 34 VPSPCIIETSEDAVYWQPQPFEPEGNFNNVERALEITL 71
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 27.0 bits (59), Expect = 8.2
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 128 LYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKR 187
L ++KFK +EF A F + ++ PQLR VP ++ +
Sbjct: 166 LLKDKFKL---SEFTKNFANCYAEPIFTNISHINNPQLRNVPWSVSTGTEQKLSSEQQRL 222
Query: 188 IIETSDTVYNAMKK 201
I T+YN + +
Sbjct: 223 IHNPMTTIYNTLTR 236
>gnl|CDD|115278 pfam06608, DUF1143, Protein of unknown function (DUF1143). This
family consists of several hypothetical mammalian
proteins (from mouse and human). The function of this
family is unknown.
Length = 149
Score = 27.0 bits (59), Expect = 8.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 241 RNDNKNIIGPLPADSMFHHSARQCYD 266
R D KNI+ P P S F H+ YD
Sbjct: 76 RYDLKNIVKPKPLPSQFGHAFETTYD 101
>gnl|CDD|184115 PRK13528, PRK13528, outer membrane receptor FepA; Provisional.
Length = 727
Score = 26.6 bits (59), Expect = 9.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 215 LNPHAGENATIGIE-EKNIIIPAITYLRNDNKNII 248
L+P N IG+E + ++TY RND +N I
Sbjct: 519 LDPEISVNKEIGLEFTVDDYHASVTYFRNDYQNKI 553
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 26.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 300 TSPDHGTAFDIAGSSLTQEESLVSALKI 327
++P++ FD AGS +T +ESL+ + +I
Sbjct: 270 SAPNYCGEFDNAGSMMTIDESLMCSFQI 297
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,581,692
Number of extensions: 357723
Number of successful extensions: 674
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 29
Length of query: 343
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 249
Effective length of database: 3,963,321
Effective search space: 986866929
Effective search space used: 986866929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)