RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >1ptm_A 4-hydroxythreonine-4-phosphate dehydrogenase; crystal strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis, PLP; 1.96A {Escherichia coli} (A:) Length = 329 Score = 347 bits (891), Expect = 2e-96 Identities = 105/332 (31%), Positives = 160/332 (48%), Gaps = 9/332 (2%) Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65 +++T G+PAGIGPD+ ++ + D +L RA L L + L Sbjct: 6 RVVITPGEPAGIGPDLVVQLAQREWP---VELVVCADATLLTNRAAXLGLPLTLRPYSPN 62 Query: 66 N-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124 + A L ++ A + G + + + +A L+G+ A++T P+ Sbjct: 63 SPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVH 122 Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184 K ++ F GHTEF E ++ K V L+ +LR T H+P+ DI ++ Sbjct: 123 KGVINDAGIPFTGHTEFFEERSQ-----AKKVVXXLATEELRVALATTHLPLRDIADAIT 177 Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244 + E +++ ++ FGI PRI + GLNPHAGE G EE + IIP + LR Sbjct: 178 PALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHXGTEEIDTIIPVLNELRAQG 237 Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 + GPLPAD++F D + YHDQ L +K F + VNITLGLPF+RTS DH Sbjct: 238 XKLNGPLPADTLFQPKYLDNADAVLAXYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDH 297 Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 GTA ++AG S ++AL +A + Sbjct: 298 GTALELAGRGKADVGSFITALNLAIKXIVNTQ 329 >2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} (A:) Length = 330 Score = 345 bits (887), Expect = 4e-96 Identities = 113/329 (34%), Positives = 160/329 (48%), Gaps = 8/329 (2%) Query: 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64 + +T GDPAGIGP+I +KA + + P + + +AK + +V L + Sbjct: 7 KTVAITXGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIER 66 Query: 65 KNAVSIFKKALPIISSPCG--AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122 + +I P + G Q +++A L L G AI T P Sbjct: 67 VAEARFAPGIIHVIDEPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAP 126 Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182 + K L+ +PGHTE LA L +L +L+ + V+ HI + Sbjct: 127 LNKEALHLAGHNYPGHTELLATLTHSR-----DYAXVLYTDKLKVIHVSTHIALRKFLDT 181 Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242 LST R+ +K+ G PRIA++G+NPHAGEN G EE I+ PAIT R Sbjct: 182 LSTARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDARA 240 Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302 ++ GP P D++F + YD + YHDQ IP+K L F VNIT GLPF+RTS Sbjct: 241 KGXDVYGPCPPDTVFLQAYEGQYDXVVAXYHDQGHIPLKLLGFYDGVNITAGLPFIRTSA 300 Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQL 331 DHGTAFDIA + + ES ++K+A QL Sbjct: 301 DHGTAFDIAWTGKAKSESXAVSIKLAXQL 329 >1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} (A:) Length = 328 Score = 342 bits (878), Expect = 4e-95 Identities = 117/328 (35%), Positives = 168/328 (51%), Gaps = 10/328 (3%) Query: 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64 L LT G+PAGIGPD+ L S Q P I I +L RA QL L++ L + Sbjct: 3 LRFALTPGEPAGIGPDLCLLLARSAQP---HPLIAIASRTLLQERAGQLGLAIDLKDVSP 59 Query: 65 KNAVSIFKKA--LPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122 KA L + +P A + G + A+ + + +A L G +T P Sbjct: 60 AAWPERPAKAGQLYVWDTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGXITAP 119 Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182 + K ++ + F GHTEFLA+L + V L+ LR T H+P+ ++ Sbjct: 120 VHKGVINEAGIPFSGHTEFLADLTHTA-----QVVXXLATRGLRVALATTHLPLREVADA 174 Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242 +S +R+ + ++ ++ FGI +PRI + GLNPHAGE +G EE +I P + LR Sbjct: 175 ISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLRG 234 Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302 + ++IGPLPAD++F + D + YHDQ L +K F VN+TLGLP +RTS Sbjct: 235 EGLDLIGPLPADTLFTPKHLEHCDAVLAXYHDQGLPVLKYKGFGAAVNVTLGLPIIRTSV 294 Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQ 330 DHGTA D+AGS SL AL+ A Q Sbjct: 295 DHGTALDLAGSGRIDSGSLQVALETAYQ 322 >2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, cleavage on PAIR of basic residues, glycoprotein, hydrolase protease, secreted; HET: IHN; 2.50A {Candida albicans} (A:193-311) Length = 119 Score = 26.6 bits (58), Expect = 4.5 Identities = 8/64 (12%), Positives = 19/64 (29%) Query: 78 ISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPG 137 + + + +GT S + NI A+ + + F+F Sbjct: 17 VDANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADCKTSGTIDFQFGN 76 Query: 138 HTEF 141 + + Sbjct: 77 NLKI 80 >2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A* (A:) Length = 295 Score = 25.8 bits (56), Expect = 7.6 Identities = 3/22 (13%), Positives = 9/22 (40%) Query: 185 TKRIIETSDTVYNAMKKYFGIN 206 + + + + +K F I+ Sbjct: 258 IEFKTLSEEEIEKVLKNIFNIS 279 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,538,867 Number of extensions: 110595 Number of successful extensions: 234 Number of sequences better than 10.0: 1 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 8 Length of query: 343 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 254 Effective length of database: 1,947,404 Effective search space: 494640616 Effective search space used: 494640616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.5 bits)