RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(343 letters)
>1ptm_A 4-hydroxythreonine-4-phosphate dehydrogenase; crystal
strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis,
PLP; 1.96A {Escherichia coli} (A:)
Length = 329
Score = 347 bits (891), Expect = 2e-96
Identities = 105/332 (31%), Positives = 160/332 (48%), Gaps = 9/332 (2%)
Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65
+++T G+PAGIGPD+ ++ + D +L RA L L + L
Sbjct: 6 RVVITPGEPAGIGPDLVVQLAQREWP---VELVVCADATLLTNRAAXLGLPLTLRPYSPN 62
Query: 66 N-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124
+ A L ++ A + G + + + +A L+G+ A++T P+
Sbjct: 63 SPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVH 122
Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184
K ++ F GHTEF E ++ K V L+ +LR T H+P+ DI ++
Sbjct: 123 KGVINDAGIPFTGHTEFFEERSQ-----AKKVVXXLATEELRVALATTHLPLRDIADAIT 177
Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244
+ E +++ ++ FGI PRI + GLNPHAGE G EE + IIP + LR
Sbjct: 178 PALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHXGTEEIDTIIPVLNELRAQG 237
Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304
+ GPLPAD++F D + YHDQ L +K F + VNITLGLPF+RTS DH
Sbjct: 238 XKLNGPLPADTLFQPKYLDNADAVLAXYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDH 297
Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336
GTA ++AG S ++AL +A +
Sbjct: 298 GTALELAGRGKADVGSFITALNLAIKXIVNTQ 329
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal
phosphate biosynthesis, structural genomics, PSI-2;
2.30A {Salmonella typhimurium LT2} (A:)
Length = 330
Score = 345 bits (887), Expect = 4e-96
Identities = 113/329 (34%), Positives = 160/329 (48%), Gaps = 8/329 (2%)
Query: 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64
+ +T GDPAGIGP+I +KA + + P + + +AK + +V L +
Sbjct: 7 KTVAITXGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIER 66
Query: 65 KNAVSIFKKALPIISSPCG--AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122
+ +I P + G Q +++A L L G AI T P
Sbjct: 67 VAEARFAPGIIHVIDEPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAP 126
Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182
+ K L+ +PGHTE LA L +L +L+ + V+ HI +
Sbjct: 127 LNKEALHLAGHNYPGHTELLATLTHSR-----DYAXVLYTDKLKVIHVSTHIALRKFLDT 181
Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242
LST R+ +K+ G PRIA++G+NPHAGEN G EE I+ PAIT R
Sbjct: 182 LSTARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDARA 240
Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302
++ GP P D++F + YD + YHDQ IP+K L F VNIT GLPF+RTS
Sbjct: 241 KGXDVYGPCPPDTVFLQAYEGQYDXVVAXYHDQGHIPLKLLGFYDGVNITAGLPFIRTSA 300
Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQL 331
DHGTAFDIA + + ES ++K+A QL
Sbjct: 301 DHGTAFDIAWTGKAKSESXAVSIKLAXQL 329
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1;
PA0593,pyridoxine biosynthesis,oxidoreductase,
structural genomics, PSI; 2.01A {Pseudomonas aeruginosa}
(A:)
Length = 328
Score = 342 bits (878), Expect = 4e-95
Identities = 117/328 (35%), Positives = 168/328 (51%), Gaps = 10/328 (3%)
Query: 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64
L LT G+PAGIGPD+ L S Q P I I +L RA QL L++ L +
Sbjct: 3 LRFALTPGEPAGIGPDLCLLLARSAQP---HPLIAIASRTLLQERAGQLGLAIDLKDVSP 59
Query: 65 KNAVSIFKKA--LPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNP 122
KA L + +P A + G + A+ + + +A L G +T P
Sbjct: 60 AAWPERPAKAGQLYVWDTPLAAPVRPGQLDRANAAYVLETLTRAGQGCLDGHFAGXITAP 119
Query: 123 IAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182
+ K ++ + F GHTEFLA+L + V L+ LR T H+P+ ++
Sbjct: 120 VHKGVINEAGIPFSGHTEFLADLTHTA-----QVVXXLATRGLRVALATTHLPLREVADA 174
Query: 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242
+S +R+ + ++ ++ FGI +PRI + GLNPHAGE +G EE +I P + LR
Sbjct: 175 ISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLRG 234
Query: 243 DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSP 302
+ ++IGPLPAD++F + D + YHDQ L +K F VN+TLGLP +RTS
Sbjct: 235 EGLDLIGPLPADTLFTPKHLEHCDAVLAXYHDQGLPVLKYKGFGAAVNVTLGLPIIRTSV 294
Query: 303 DHGTAFDIAGSSLTQEESLVSALKIAAQ 330
DHGTA D+AGS SL AL+ A Q
Sbjct: 295 DHGTALDLAGSGRIDSGSLQVALETAYQ 322
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease,
cleavage on PAIR of basic residues, glycoprotein,
hydrolase protease, secreted; HET: IHN; 2.50A {Candida
albicans} (A:193-311)
Length = 119
Score = 26.6 bits (58), Expect = 4.5
Identities = 8/64 (12%), Positives = 19/64 (29%)
Query: 78 ISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPG 137
+ + + +GT S + NI A+ + + F+F
Sbjct: 17 VDANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADCKTSGTIDFQFGN 76
Query: 138 HTEF 141
+ +
Sbjct: 77 NLKI 80
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1,
structural genomics, structural genomics consortium,
SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A* (A:)
Length = 295
Score = 25.8 bits (56), Expect = 7.6
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 185 TKRIIETSDTVYNAMKKYFGIN 206
+ + + + +K F I+
Sbjct: 258 IEFKTLSEEEIEKVLKNIFNIS 279
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,538,867
Number of extensions: 110595
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 8
Length of query: 343
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 254
Effective length of database: 1,947,404
Effective search space: 494640616
Effective search space used: 494640616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)