BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (343 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/343 (100%), Positives = 343/343 (100%) Query: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY Sbjct: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60 Query: 61 ETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVT 120 ETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVT Sbjct: 61 ETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVT 120 Query: 121 NPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC 180 NPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC Sbjct: 121 NPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC 180 Query: 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL Sbjct: 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 Query: 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRT 300 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRT Sbjct: 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRT 300 Query: 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLCNDHEQ 343 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLCNDHEQ Sbjct: 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLCNDHEQ 343 >gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 702 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Query: 188 IIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEK 230 +++ +Y M++Y+ + + + GL+PH+ E IEE+ Sbjct: 32 LLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSPEK----IEER 70 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 176 IADICRILSTK--RIIETSDTVYNAMKKYFGINNPRIAISGLNPHAG-ENATIGI 227 I I R+LS IIE VY + + +N+ IA+ G P+A NA GI Sbjct: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV-GRKPYANPRNAASGI 223 >gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 325 Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 21 ISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62 I + WA + T I GD+ + NA K+ ++S+ L T Sbjct: 42 IKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT 83 >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Query: 234 IPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYH 273 + A+++++N N +I + S++H+ C + C +H Sbjct: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLAC--IQTCFFH 262 >gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 274 Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 8/48 (16%) Query: 16 GIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62 GI P S A R ++T D+D++ A +LNL V +ET Sbjct: 49 GIYPPHSFHAQDGRGELTGF-------DIDLIKEVAHRLNLKVEFFET 89 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 24.3 bits (51), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 71 FKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLS 112 FK LP+ SP A + T T + + IAN+ K+ L++ Sbjct: 542 FKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIE 583 >gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKY 202 +SGP + +VP + + + I R+ R + YN+ +KY Sbjct: 24 VSGPYIYSVPSAMKVELGSIVRVPLRSRTV-LGIVWYNSEEKY 65 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 193 DTVYNAMKKYFGINNPRIAISGLNPHAGENATI 225 +T++ Y IN+P+ +I +N A NA I Sbjct: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 >gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 23 LKAWASRQITAIPPFIYIGD 42 LK WA ++I PF+ GD Sbjct: 9 LKKWADQKIKTGIPFVIAGD 28 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,293 Number of Sequences: 1233 Number of extensions: 8476 Number of successful extensions: 32 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 12 length of query: 343 length of database: 328,796 effective HSP length: 75 effective length of query: 268 effective length of database: 236,321 effective search space: 63334028 effective search space used: 63334028 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)