BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(343 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 343
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60
MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY
Sbjct: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60
Query: 61 ETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVT 120
ETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVT
Sbjct: 61 ETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVT 120
Query: 121 NPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC 180
NPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC
Sbjct: 121 NPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADIC 180
Query: 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240
RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL
Sbjct: 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240
Query: 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRT 300
RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRT
Sbjct: 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRT 300
Query: 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLCNDHEQ 343
SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLCNDHEQ
Sbjct: 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNLCNDHEQ 343
>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 702
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 188 IIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEK 230
+++ +Y M++Y+ + + + GL+PH+ E IEE+
Sbjct: 32 LLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSPEK----IEER 70
>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 176 IADICRILSTK--RIIETSDTVYNAMKKYFGINNPRIAISGLNPHAG-ENATIGI 227
I I R+LS IIE VY + + +N+ IA+ G P+A NA GI
Sbjct: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV-GRKPYANPRNAASGI 223
>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 325
Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 21 ISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62
I + WA + T I GD+ + NA K+ ++S+ L T
Sbjct: 42 IKYRYWAEKHETLTDIAIQAGDIALRNANIKKDSISLTLLAT 83
>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
psy62]
Length = 616
Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 234 IPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYH 273
+ A+++++N N +I + S++H+ C + C +H
Sbjct: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLAC--IQTCFFH 262
>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 274
Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 16 GIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62
GI P S A R ++T D+D++ A +LNL V +ET
Sbjct: 49 GIYPPHSFHAQDGRGELTGF-------DIDLIKEVAHRLNLKVEFFET 89
>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 652
Score = 24.3 bits (51), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 71 FKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLS 112
FK LP+ SP A + T T + + IAN+ K+ L++
Sbjct: 542 FKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIE 583
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKY 202
+SGP + +VP + + + I R+ R + YN+ +KY
Sbjct: 24 VSGPYIYSVPSAMKVELGSIVRVPLRSRTV-LGIVWYNSEEKY 65
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 193 DTVYNAMKKYFGINNPRIAISGLNPHAGENATI 225
+T++ Y IN+P+ +I +N A NA I
Sbjct: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 125
Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 23 LKAWASRQITAIPPFIYIGD 42
LK WA ++I PF+ GD
Sbjct: 9 LKKWADQKIKTGIPFVIAGD 28
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,293
Number of Sequences: 1233
Number of extensions: 8476
Number of successful extensions: 32
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 12
length of query: 343
length of database: 328,796
effective HSP length: 75
effective length of query: 268
effective length of database: 236,321
effective search space: 63334028
effective search space used: 63334028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)