HHsearch alignment for GI: 254780398 and conserved domain: COG1041

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].

Probab=97.48  E-value=0.00019  Score=47.98  Aligned_cols=105  Identities=17%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH
Q ss_conf             65841123989999999971989998799975898823467750235259984255430368878753220-01220000
Q gi|254780398|r   24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD  102 (284)
Q Consensus        24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~  102 (284)
T Consensus       174 Pf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~  252 (347)
T COG1041         174 PFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKV  252 (347)
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             85676885989999987774164698764576783488883664275-67603237999855664156627676168873


Q ss_pred             -HHCCCCHHHHCCCCCCEEEEECCCHHHHHHH
Q ss_conf             -0001431552133222011202322467889
Q gi|254780398|r  103 -DALKVDFEKFFNISSPIRIIANLPYNIGTRL  133 (284)
Q Consensus       103 -Dal~~d~~~~~~~~~~~~vvgNLPYnIss~I  133 (284)
T Consensus       253 ~Da~~lpl~~~----~vdaIatDPPYGrst~~  280 (347)
T COG1041         253 LDATNLPLRDN----SVDAIATDPPYGRSTKI  280 (347)
T ss_pred             CCCCCCCCCCC----CCCEEEECCCCCCCCCC
T ss_conf             02212778877----42358846998710024