HHsearch alignment for GI: 254780398 and conserved domain: COG1189
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=97.07 E-value=0.0055 Score=38.89 Aligned_cols=154 Identities=22% Similarity=0.338 Sum_probs=78.4
Q ss_pred HHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCC-HHHHCCCCHHHHCC
Q ss_conf 99997198-999879997589882346775023525998425543-0368878753220012200-00000143155213
Q gi|254780398|r 38 KIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEII-QDDALKVDFEKFFN 114 (284)
Q Consensus 38 ~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii-~~Dal~~d~~~~~~ 114 (284)
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d~-rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----NDP-RVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHH----CCC-CEEEEECCCHHHCCHHHCCC
T ss_conf 9999648688997899826787629999987587479999703774378673----598-47998527831189878176
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE--EHHHHHHHHHCCC---HHHHHH--HHHHHCCCCCEEEE
Q ss_conf 3222011202322467889999985201000000110203--3447887530123---123323--45432013320120
Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKN---SPHYGR--LSVLTGWRTKATMM 187 (284)
Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmv--QkEvA~Rl~a~pg---~k~Yg~--LSv~~q~~~~v~~~ 187 (284)
T Consensus 144 --~~d~~v~DvSF-ISL~~iLp~l~~l~~~~--~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~--~~g 216 (245)
T COG1189 144 --KPDLIVIDVSF-ISLKLILPALLLLLKDG--GDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAK--ELG 216 (245)
T ss_pred --CCCEEEEEEEH-HHHHHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHH--HCC
T ss_conf --77847996423-31998889999742788--638997365555404322768634480158999999998886--459
Q ss_pred CCCCCCEECCCCCCCE
Q ss_conf 0011000010578757
Q gi|254780398|r 188 FDISPHVFFPSPKVTS 203 (284)
Q Consensus 188 ~~V~~~~F~P~PkVdS 203 (284)
T Consensus 217 ~~~~gl~~Spi~G~~G 232 (245)
T COG1189 217 FQVKGLIKSPIKGGKG 232 (245)
T ss_pred CEEEEEECCCCCCCCC
T ss_conf 5786557267767878