HHsearch alignment for GI: 254780398 and conserved domain: COG2263

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.79  E-value=2.4e-08  Score=72.16  Aligned_cols=162  Identities=21%  Similarity=0.250  Sum_probs=110.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             843365841123989999999971---98999879997589882346775023525998425543036887875322001
Q gi|254780398|r   20 IPKKYMGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR   96 (284)
Q Consensus        20 ~p~k~lGQnFL~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~   96 (284)
T Consensus        16 ~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~   94 (198)
T COG2263          16 NPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD   94 (198)
T ss_pred             CCCCCCEE-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf             99866333-47984899999999987388478888882788478899998629717999936989999999888860884


Q ss_pred             CCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH-----HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHH
Q ss_conf             220000000143155213322201120232246-----788999998520100000011020334478875301231233
Q gi|254780398|r   97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNI-----GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY  171 (284)
Q Consensus        97 ~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI-----ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Y  171 (284)
T Consensus        95 v~f~~~dv~~~~~~~-------dtvimNPPFG~~~rhaDr~Fl~~Ale~s~v---VYsiH~a~~~~f~~~~~~~~G~---  161 (198)
T COG2263          95 VEFVVADVSDFRGKF-------DTVIMNPPFGSQRRHADRPFLLKALEISDV---VYSIHKAGSRDFVEKFAADLGG---  161 (198)
T ss_pred             EEEEECCHHHCCCCC-------CEEEECCCCCCCCCCCCHHHHHHHHHHHHE---EEEEECCCCHHHHHHHHHHCCC---
T ss_conf             699982101147766-------669978997322136888999999974014---7874016607999999885497---


Q ss_pred             HHHHHHHCCCCCEEEECCCCCCEECCCCCCC
Q ss_conf             2345432013320120001100001057875
Q gi|254780398|r  172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVT  202 (284)
Q Consensus       172 g~LSv~~q~~~~v~~~~~V~~~~F~P~PkVd  202 (284)
T Consensus       162 ---~v~~~----~~~~~~iP~~y~fH~k~~~  185 (198)
T COG2263         162 ---TVTHI----ERARFPIPRTYPFHRKRVR  185 (198)
T ss_pred             ---EEEEE----EEEEEECCCCCCHHHHEEE
T ss_conf             ---08999----9999714765740141255