HHsearch alignment for GI: 254780398 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.79 E-value=2.4e-08 Score=72.16 Aligned_cols=162 Identities=21% Similarity=0.250 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 843365841123989999999971---98999879997589882346775023525998425543036887875322001
Q gi|254780398|r 20 IPKKYMGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 (284)
Q Consensus 20 ~p~k~lGQnFL~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~ 96 (284)
T Consensus 16 ~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 16 NPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred CCCCCCEE-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 99866333-47984899999999987388478888882788478899998629717999936989999999888860884
Q ss_pred CCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH-----HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHH
Q ss_conf 220000000143155213322201120232246-----788999998520100000011020334478875301231233
Q gi|254780398|r 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNI-----GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 (284)
Q Consensus 97 ~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI-----ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Y 171 (284)
T Consensus 95 v~f~~~dv~~~~~~~-------dtvimNPPFG~~~rhaDr~Fl~~Ale~s~v---VYsiH~a~~~~f~~~~~~~~G~--- 161 (198)
T COG2263 95 VEFVVADVSDFRGKF-------DTVIMNPPFGSQRRHADRPFLLKALEISDV---VYSIHKAGSRDFVEKFAADLGG--- 161 (198)
T ss_pred EEEEECCHHHCCCCC-------CEEEECCCCCCCCCCCCHHHHHHHHHHHHE---EEEEECCCCHHHHHHHHHHCCC---
T ss_conf 699982101147766-------669978997322136888999999974014---7874016607999999885497---
Q ss_pred HHHHHHHCCCCCEEEECCCCCCEECCCCCCC
Q ss_conf 2345432013320120001100001057875
Q gi|254780398|r 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 (284)
Q Consensus 172 g~LSv~~q~~~~v~~~~~V~~~~F~P~PkVd 202 (284)
T Consensus 162 ---~v~~~----~~~~~~iP~~y~fH~k~~~ 185 (198)
T COG2263 162 ---TVTHI----ERARFPIPRTYPFHRKRVR 185 (198)
T ss_pred ---EEEEE----EEEEEECCCCCCHHHHEEE
T ss_conf ---08999----9999714765740141255