HHsearch alignment for GI: 254780398 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=97.44 E-value=0.00034 Score=46.39 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCHHHHHHHHH----HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf 39899999999----71989998799975898823467750235259984255430368878753220-01220000000
Q gi|254780398|r 31 LDLNILKKIAE----SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284)
Q Consensus 31 ~d~~i~~~iv~----~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284)
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae 351 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAE 351 (432)
T ss_pred ECHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 399999999999999974369977999355887013553124-6579999648999999999999739887799958688
Q ss_pred CCCHHHHCCCCCCEEEEECCCHHHHH-HHHHHHHH
Q ss_conf 14315521332220112023224678-89999985
Q gi|254780398|r 106 KVDFEKFFNISSPIRIIANLPYNIGT-RLLFNWIS 139 (284)
Q Consensus 106 ~~d~~~~~~~~~~~~vvgNLPYnIss-~Il~~ll~ 139 (284)
T Consensus 352 ~~~~~~~-~~~~~d~VvvDPPR~G~~~~~lk~l~~ 385 (432)
T COG2265 352 EFTPAWW-EGYKPDVVVVDPPRAGADREVLKQLAK 385 (432)
T ss_pred HHHHHHC-CCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 8865100-257999899899999999899999985