HHsearch alignment for GI: 254780398 and conserved domain: COG2265

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=97.44  E-value=0.00034  Score=46.39  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHH----HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf             39899999999----71989998799975898823467750235259984255430368878753220-01220000000
Q gi|254780398|r   31 LDLNILKKIAE----SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL  105 (284)
Q Consensus        31 ~d~~i~~~iv~----~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal  105 (284)
T Consensus       273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae  351 (432)
T COG2265         273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAE  351 (432)
T ss_pred             ECHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf             399999999999999974369977999355887013553124-6579999648999999999999739887799958688


Q ss_pred             CCCHHHHCCCCCCEEEEECCCHHHHH-HHHHHHHH
Q ss_conf             14315521332220112023224678-89999985
Q gi|254780398|r  106 KVDFEKFFNISSPIRIIANLPYNIGT-RLLFNWIS  139 (284)
Q Consensus       106 ~~d~~~~~~~~~~~~vvgNLPYnIss-~Il~~ll~  139 (284)
T Consensus       352 ~~~~~~~-~~~~~d~VvvDPPR~G~~~~~lk~l~~  385 (432)
T COG2265         352 EFTPAWW-EGYKPDVVVVDPPRAGADREVLKQLAK  385 (432)
T ss_pred             HHHHHHC-CCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             8865100-257999899899999999899999985