HHsearch alignment for GI: 254780398 and conserved domain: PRK00274
>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=100.00 E-value=0 Score=562.03 Aligned_cols=261 Identities=44% Similarity=0.710 Sum_probs=242.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 79999998189843365841123989999999971989998799975898823467750235259984255430368878
Q gi|254780398|r 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 9 ~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284)
T Consensus 1 ~~~~~l~~~~~~~kK~lGQnFL~d~~ii~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~ 79 (267)
T PRK00274 1 RTRELLEHYGHRAKKSLGQNFLIDENIIDKIVRAADLQPGDRVLEIGPGLGALTEPLLERAA-KVTAIEIDRDLAPILRE 79 (267)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCC-CEEEEECCHHHHHHHHH
T ss_conf 97899987699988777822148989999999960899999079963888889999996268-05886368899999850
Q ss_pred HHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH
Q ss_conf 75322001220000000143155213322201120232246788999998520100000011020334478875301231
Q gi|254780398|r 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 (284)
Q Consensus 89 ~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~ 168 (284)
T Consensus 80 ~-----~~~~ii~~D~L~~~~~~~~~-~~~~~vvgNLPY~Iss~il~~~l~~~~---~~~~~vlmvQkEvA~Ri~a~p~~ 150 (267)
T PRK00274 80 T-----DNLTIIEGDALKVDLEELAE-GQPLKVVANLPYNISTPLLFKLLEEAP---PIRDMVLMLQKEVAERIVAKPGS 150 (267)
T ss_pred C-----CCEEEEECHHHHCCHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4-----78699965066478677456-787279955883031289999985475---41240011158777776247999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCH-
Q ss_conf 2332345432013320120001100001057875788730125885534767899999999727313899987631817-
Q gi|254780398|r 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 (284)
Q Consensus 169 k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~- 247 (284)
T Consensus 151 k~y~~LSv~~q~~~~~~~~~~V~~~~F~P~PkVdS~vi~l~p~~~~~~~~~~~~~~~~~~~F~~RRK~l~n~Lk~~~~~~ 230 (267)
T PRK00274 151 KAYGRLSVLLQYYADVEKVFDVPPSAFYPPPKVDSAVVRLVPKEPPPVKDEELFFKVVKAAFNQRRKTLRNNLKNLAGKE 230 (267)
T ss_pred CCCCHHHHHHHHHHHEEEEEEECHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHH
T ss_conf 75168899999986331211576776567987417999999789883567999999999998146489999998752888
Q ss_pred ---HHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf ---89997877746571208999999999998636
Q gi|254780398|r 248 ---NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 248 ---~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
T Consensus 231 ~~~~~l~~~~i~~~~RpeeLs~~~~~~L~~~l~~~ 265 (267)
T PRK00274 231 LLEELLEALGIDPNRRAETLSVEEFVRLANALADL 265 (267)
T ss_pred HHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 89999998697967782439999999999999997