HHsearch alignment for GI: 254780398 and conserved domain: PRK05031
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=97.67 E-value=7.4e-05 Score=50.53 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf 398999999997----1989998799975898823467750235259984255430368878753220-01220000000
Q gi|254780398|r 31 LDLNILKKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284)
Q Consensus 31 ~d~~i~~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284)
T Consensus 188 vN~~~~e~l~~~a~~~~~~~~~~-vlDLYcG~Gtfsl~LA~~-~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~ 265 (363)
T PRK05031 188 PNAAVNEKMLEWALDATKGSKGD-LLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 265 (363)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 79899999999999976138982-898605866426998862-6879999538999999999999869986499965899
Q ss_pred CCCHH--------HHC----CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHH---HCCCH--
Q ss_conf 14315--------521----33222011202322467889999985201000000110203344788753---01231--
Q gi|254780398|r 106 KVDFE--------KFF----NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT---AQKNS-- 168 (284)
Q Consensus 106 ~~d~~--------~~~----~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~---a~pg~-- 168 (284)
T Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvDPPR~Gl~~~~~~~i~~------~------------~rIVYVSCnP~Tla 327 (363)
T PRK05031 266 EFTQAMNGVREFRRLKGIDLKSYNFSTIFVDPPRAGLDEETLKLVQN------Y------------ERILYISCNPETLK 327 (363)
T ss_pred HHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHC------C------------CEEEEEECCHHHHH
T ss_conf 99998734310100124664435586489899988874999999836------8------------90999928989999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCEECCCC-CCCEEEEEECCC
Q ss_conf 2332345432013320120001100001057-875788730125
Q gi|254780398|r 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSP-KVTSTVIHFIPH 211 (284)
Q Consensus 169 k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~P-kVdS~vi~l~pk 211 (284)
T Consensus 328 RD---l~~L~~~-y~l---~~v~~vDmFPqT~HvE~val-L~rk 363 (363)
T PRK05031 328 EN---LETLSQT-HKV---ERFALFDQFPYTHHMECGVL-LEKK 363 (363)
T ss_pred HH---HHHHHHC-CEE---EEEEEECCCCCCCCEEEEEE-EEEC
T ss_conf 99---9998744-658---89998426999972789999-9809