HHsearch alignment for GI: 254780398 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=97.99 E-value=2.4e-05 Score=53.56 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=97.6
Q ss_pred CCC-CCHHHHHHH----HHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCH
Q ss_conf 112-398999999----9971989998799975898823467750235259984255430368878753220-0122000
Q gi|254780398|r 28 NFL-LDLNILKKI----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101 (284)
Q Consensus 28 nFL-~d~~i~~~i----v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~ 101 (284)
T Consensus 270 sFfQvN~~~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~-~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~ 348 (440)
T PRK13168 270 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVPAMVERARENARRNGLDNVTFYH 348 (440)
T ss_pred CEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8786599999999999999852678988998623856211113530-676887605799999999999974999878997
Q ss_pred HHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 00001431552133222011202322467889999985201000000110203344788753012312332345432013
Q gi|254780398|r 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 (284)
Q Consensus 102 ~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~ 181 (284)
T Consensus 349 ~d~~~~l~~~~~~~~~~D~vi~DPPR~G~~~~i~~l~~~~--p---~~I-vYV--------SCnPaTlARD-l~~L~~~G 413 (440)
T PRK13168 349 ANLFEDFTDQPWAKGGFDKVLLDPPRAGAFEVMQALAKLK--P---KRI-VYV--------SCNPATLARD-AGVLVEAG 413 (440)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC--C---CEE-EEE--------CCCHHHHHHH-HHHHHHCC
T ss_conf 4645663557863799998999988527899999998479--8---979-999--------3898999999-99998789
Q ss_pred CCEEEECCCCCCEECCCC-CCCEEEE
Q ss_conf 320120001100001057-8757887
Q gi|254780398|r 182 TKATMMFDISPHVFFPSP-KVTSTVI 206 (284)
Q Consensus 182 ~~v~~~~~V~~~~F~P~P-kVdS~vi 206 (284)
T Consensus 414 Y~l---~~i~~vDmFP~T~HvE~val 436 (440)
T PRK13168 414 YRL---KRAGVLDMFPHTGHVESMAL 436 (440)
T ss_pred CEE---EEEEEEECCCCCCEEEEEEE
T ss_conf 489---59999606999983899999