HHsearch alignment for GI: 254780398 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=91.77 E-value=0.18 Score=29.47 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=61.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCH-HHH----CCCC
Q ss_conf 899987999758988234677502352--59984255430368878753220-012200000001431-552----1332
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDF-EKF----FNIS 116 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~-~~~----~~~~ 116 (284)
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~---------k~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM---------KGFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCC---------CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 107886786578987387788776068533899854557---------88564661475447678789999998578987
Q ss_pred CCE-EEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHH-EEEHHHHHHHHHCCCH
Q ss_conf 220-112023224678899999852010000001102-0334478875301231
Q gi|254780398|r 117 SPI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTL-LFQKEVGERITAQKNS 168 (284)
Q Consensus 117 ~~~-~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vl-mvQkEvA~Rl~a~pg~ 168 (284)
T Consensus 101 kk~DVV~SDaaP~~SG~~~---iDh------~Rs~dLv~~aL~ia~~vL~~~Gn 145 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGIWD---IDH------LRSIDLVELALDIAKEVLKPKGN 145 (192)
T ss_pred CEEEEEEECCCCCCCCCCC---CCH------HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4377898526888789875---434------43799999999999998615898