HHsearch alignment for GI: 254780398 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=95.58 E-value=0.016 Score=36.01 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCC-CCHHHHHHHHH----HHHCCCC--CCHHHHC-CCCHHHHCCC
Q ss_conf 99987999758988234677502352599842554-30368878753----2200122--0000000-1431552133
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDISS----QHPNRLE--IIQDDAL-KVDFEKFFNI 115 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~-~~~~~l~~~~~----~~~~~~~--ii~~Dal-~~d~~~~~~~ 115 (284)
T Consensus 76 vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N-~rGy~T~~d~~~~qP~P~lA~~ 152 (240)
T TIGR00478 76 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTN-IRGYVTPADIVKDQPMPDLAVV 152 (240)
T ss_pred ECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEEECCC-CCCCCCHHHHHCCCCCCCHHHH
T ss_conf 3786899705673048999987058467778603213343236366268964578-7444665654078889731444