HHsearch alignment for GI: 254780398 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.68  E-value=5.2e-08  Score=70.14  Aligned_cols=104  Identities=13%  Similarity=0.265  Sum_probs=74.8

Q ss_pred             CCCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf             3658411239899----------999999719899987999758988234677502352-59984255430368878753
Q gi|254780398|r   23 KYMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS   91 (284)
Q Consensus        23 k~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~   91 (284)
T Consensus        54 ~F~~~~f~V~~~VLIPRpETE~Lve~~l~~~~~-~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~  132 (251)
T TIGR03534        54 EFYGLDFKVSPGVLIPRPDTEELVEAALERLKK-GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAK  132 (251)
T ss_pred             EEEEEEEEEECCEEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             898689997188786488339999999997314-8986999556716999999996799789999898799999999999


Q ss_pred             HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf             220-01220000000143155213322201120232246788
Q gi|254780398|r   92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR  132 (284)
Q Consensus        92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~  132 (284)
T Consensus       133 ~~~~~~v~~~~~d~~~~~~~-----~~fDlIvsNPPYI~~~e  169 (251)
T TIGR03534       133 RLGLENVRFLKSDWFEPLPG-----GKFDLIVSNPPYIPEAD  169 (251)
T ss_pred             HCCCCEEEEEECCHHHCCCC-----CCCCEEEECCCCCCHHH
T ss_conf             80998268651314321568-----98668997899887456