Query gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 284
No_of_seqs 140 out of 3131
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 16:28:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780398.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00755 ksgA dimethyladenosi 100.0 0 0 581.3 17.7 254 19-276 1-277 (277)
2 PRK00274 ksgA dimethyladenosin 100.0 0 0 562.0 20.7 261 9-279 1-265 (267)
3 COG0030 KsgA Dimethyladenosine 100.0 0 0 548.6 19.9 254 18-279 1-257 (259)
4 PTZ00338 dimethyladenosine tra 100.0 0 0 543.1 19.1 254 15-279 6-291 (296)
5 pfam00398 RrnaAD Ribosomal RNA 100.0 0 0 538.3 20.1 253 18-278 1-258 (258)
6 KOG0821 consensus 100.0 0 0 390.3 13.7 274 6-279 9-305 (326)
7 smart00650 rADc Ribosomal RNA 100.0 0 0 386.2 9.8 169 35-212 1-169 (169)
8 KOG0820 consensus 100.0 0 0 374.8 13.5 254 14-278 25-309 (315)
9 COG3963 Phospholipid N-methylt 99.4 1.5E-12 3.8E-17 98.4 8.5 135 13-157 15-158 (194)
10 pfam05175 MTS Methyltransferas 99.0 1.5E-09 3.9E-14 79.6 7.2 138 31-189 16-162 (170)
11 PRK00312 pcm protein-L-isoaspa 99.0 1.8E-09 4.6E-14 79.2 6.9 81 24-106 56-137 (213)
12 COG4123 Predicted O-methyltran 98.9 3.7E-09 9.4E-14 77.3 6.2 102 25-131 25-129 (248)
13 PRK00216 ubiE ubiquinone/menaq 98.9 4.6E-09 1.2E-13 76.7 6.4 105 3-111 6-119 (239)
14 PRK13942 protein-L-isoaspartat 98.8 1.6E-08 4.1E-13 73.3 7.1 83 24-107 54-139 (214)
15 pfam01135 PCMT Protein-L-isoas 98.8 1.6E-08 4E-13 73.4 6.9 79 26-106 53-135 (205)
16 COG2263 Predicted RNA methylas 98.8 2.4E-08 6.2E-13 72.2 7.6 162 20-202 16-185 (198)
17 PRK08317 hypothetical protein; 98.7 3.1E-08 7.8E-13 71.5 6.5 78 34-111 6-85 (241)
18 PRK13944 protein-L-isoaspartat 98.7 4.1E-08 1E-12 70.8 6.7 81 25-106 51-135 (205)
19 TIGR03533 L3_gln_methyl protei 98.7 3.9E-08 1E-12 70.9 6.2 104 24-132 87-204 (284)
20 COG2518 Pcm Protein-L-isoaspar 98.7 4.4E-08 1.1E-12 70.6 6.2 80 26-106 51-131 (209)
21 TIGR03534 RF_mod_HemK protein- 98.7 5.2E-08 1.3E-12 70.1 6.5 104 23-132 54-169 (251)
22 pfam01209 Ubie_methyltran ubiE 98.7 4.7E-08 1.2E-12 70.4 6.0 106 1-111 1-114 (233)
23 PRK13943 protein-L-isoaspartat 98.7 4.8E-08 1.2E-12 70.3 6.0 103 29-136 57-164 (317)
24 PRK09328 N5-glutamine S-adenos 98.6 4.7E-08 1.2E-12 70.4 5.3 103 23-131 76-190 (277)
25 COG2242 CobL Precorrin-6B meth 98.6 1.1E-07 2.8E-12 68.1 7.0 126 30-164 17-146 (187)
26 PRK07402 precorrin-6B methylas 98.6 9.7E-08 2.5E-12 68.4 6.7 106 30-139 23-130 (196)
27 PRK11805 N5-glutamine S-adenos 98.6 9.1E-08 2.3E-12 68.6 6.4 104 24-132 99-216 (307)
28 pfam01170 UPF0020 Putative RNA 98.6 2.9E-07 7.5E-12 65.5 8.1 130 31-165 12-153 (171)
29 PRK01683 trans-aconitate 2-met 98.5 2E-07 5.1E-12 66.5 6.0 83 37-129 21-105 (252)
30 PRK00377 cbiT cobalt-precorrin 98.5 2.5E-07 6.5E-12 65.8 6.2 78 30-107 23-104 (198)
31 PRK08287 cobalt-precorrin-6Y C 98.5 5.5E-07 1.4E-11 63.7 6.8 77 30-106 13-91 (186)
32 PRK10258 biotin biosynthesis p 98.5 2.1E-07 5.3E-12 66.4 4.5 102 20-130 15-116 (251)
33 PTZ00098 phosphoethanolamine N 98.4 5.5E-07 1.4E-11 63.8 6.5 90 22-112 25-116 (263)
34 COG2226 UbiE Methylase involve 98.4 4.5E-07 1.1E-11 64.3 6.0 103 6-112 9-118 (238)
35 TIGR02469 CbiT precorrin-6Y C5 98.4 7.1E-07 1.8E-11 63.1 6.7 69 37-105 9-82 (135)
36 COG2519 GCD14 tRNA(1-methylade 98.4 8E-07 2E-11 62.7 6.7 79 33-111 80-162 (256)
37 PRK09329 N5-glutamine S-adenos 98.4 4.1E-07 1.1E-11 64.5 4.9 105 23-133 74-190 (285)
38 TIGR02072 BioC biotin biosynth 98.4 1.2E-07 3.1E-12 67.8 2.2 103 21-128 5-121 (272)
39 COG2890 HemK Methylase of poly 98.4 1.4E-06 3.6E-11 61.2 6.8 101 25-131 79-190 (280)
40 PRK09489 rsmC 16S ribosomal RN 98.3 1.4E-06 3.7E-11 61.2 6.6 142 40-207 189-337 (342)
41 PRK05134 3-demethylubiquinone- 98.3 1.5E-06 3.9E-11 61.0 6.4 77 30-107 31-107 (233)
42 pfam08704 GCD14 tRNA methyltra 98.3 7E-07 1.8E-11 63.1 4.6 79 31-109 86-168 (309)
43 pfam02353 CMAS Cyclopropane-fa 98.3 2.1E-06 5.3E-11 60.2 6.6 73 34-107 49-124 (273)
44 cd02440 AdoMet_MTases S-adenos 98.3 1.3E-06 3.2E-11 61.5 5.0 76 50-128 1-77 (107)
45 TIGR02021 BchM-ChlM magnesium 98.3 1.8E-06 4.7E-11 60.5 5.8 77 35-112 39-121 (224)
46 PRK07580 Mg-protoporphyrin IX 98.3 2.5E-06 6.5E-11 59.6 6.5 68 35-103 48-120 (230)
47 pfam02384 N6_Mtase N-6 DNA Met 98.3 1.7E-05 4.4E-10 54.4 10.4 186 12-211 12-234 (312)
48 PRK01544 bifunctional N5-gluta 98.2 1.4E-06 3.6E-11 61.2 4.6 106 23-133 80-219 (503)
49 TIGR00537 hemK_rel_arch methyl 98.2 2.4E-06 6.1E-11 59.8 4.6 78 45-128 19-97 (183)
50 PRK00517 prmA ribosomal protei 98.1 1.2E-05 3.1E-10 55.4 7.4 85 45-136 160-246 (298)
51 smart00828 PKS_MT Methyltransf 98.1 3.4E-06 8.8E-11 58.8 4.4 66 49-114 1-69 (224)
52 PRK11705 cyclopropane fatty ac 98.1 7.1E-06 1.8E-10 56.8 5.8 69 34-105 154-223 (383)
53 KOG2904 consensus 98.0 2.2E-05 5.6E-10 53.8 6.6 98 34-132 132-237 (328)
54 PRK13168 rumA 23S rRNA 5-methy 98.0 2.4E-05 6.1E-10 53.6 6.9 160 28-206 270-436 (440)
55 TIGR00406 prmA ribosomal prote 98.0 1.1E-05 2.7E-10 55.8 4.7 112 46-164 193-314 (330)
56 COG4076 Predicted RNA methylas 98.0 4E-06 1E-10 58.4 2.5 62 48-111 33-96 (252)
57 TIGR00080 pimt protein-L-isoas 98.0 1.4E-05 3.6E-10 55.0 5.2 149 25-198 57-220 (228)
58 COG2264 PrmA Ribosomal protein 98.0 4.6E-05 1.2E-09 51.8 7.7 108 24-139 140-247 (300)
59 pfam02475 Met_10 Met-10+ like- 97.9 2.4E-05 6.1E-10 53.6 6.1 100 23-129 68-180 (199)
60 pfam03602 Cons_hypoth95 Conser 97.9 5.5E-05 1.4E-09 51.3 7.8 135 34-173 27-174 (181)
61 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 1.3E-05 3.3E-10 55.3 4.4 89 24-112 20-123 (242)
62 PRK03522 rumB 23S rRNA methylu 97.9 3.8E-05 9.6E-10 52.4 6.3 154 31-211 213-375 (375)
63 COG2230 Cfa Cyclopropane fatty 97.9 3.5E-05 9E-10 52.5 6.1 89 19-107 35-134 (283)
64 PRK11873 arsM arsenite S-adeno 97.9 3E-05 7.6E-10 53.0 5.3 87 42-132 68-157 (258)
65 pfam09445 Methyltransf_15 RNA 97.8 3.1E-05 7.8E-10 52.9 5.1 77 49-127 2-81 (165)
66 PRK10909 rsmD 16S rRNA m(2)G96 97.8 0.00013 3.2E-09 49.1 8.1 125 33-163 37-165 (198)
67 pfam06325 PrmA Ribosomal prote 97.8 6.9E-05 1.8E-09 50.7 6.5 84 45-136 158-243 (294)
68 pfam05401 NodS Nodulation prot 97.8 8.9E-06 2.3E-10 56.2 1.9 87 39-131 34-121 (201)
69 KOG1500 consensus 97.8 4.1E-05 1E-09 52.1 5.3 86 26-112 152-243 (517)
70 pfam08123 DOT1 Histone methyla 97.8 0.00015 3.8E-09 48.6 8.1 113 13-128 11-134 (205)
71 pfam01596 Methyltransf_3 O-met 97.8 4.9E-05 1.3E-09 51.6 5.1 83 24-107 22-108 (204)
72 PHA02056 putative methyltransf 97.7 3.7E-05 9.4E-10 52.4 4.0 89 29-128 48-137 (279)
73 PRK04457 spermidine synthase; 97.7 5.6E-05 1.4E-09 51.3 4.9 74 35-108 53-130 (262)
74 PRK06202 hypothetical protein; 97.7 9.6E-05 2.4E-09 49.8 5.8 76 33-108 45-127 (233)
75 COG2813 RsmC 16S RNA G1207 met 97.7 0.0001 2.6E-09 49.7 5.7 132 38-189 149-288 (300)
76 PRK05031 tRNA (uracil-5-)-meth 97.7 7.4E-05 1.9E-09 50.5 4.9 153 31-211 188-363 (363)
77 COG2227 UbiG 2-polyprenyl-3-me 97.7 0.00027 6.8E-09 47.1 7.7 89 30-124 39-130 (243)
78 pfam08241 Methyltransf_11 Meth 97.7 2.6E-05 6.6E-10 53.4 2.5 57 52-110 1-57 (95)
79 pfam07021 MetW Methionine bios 97.7 7E-05 1.8E-09 50.7 4.7 79 45-138 11-89 (193)
80 KOG1270 consensus 97.6 0.00018 4.5E-09 48.2 6.5 122 47-198 89-225 (282)
81 PRK05785 hypothetical protein; 97.6 0.00015 3.9E-09 48.5 5.8 99 1-111 1-106 (225)
82 COG0220 Predicted S-adenosylme 97.6 0.00012 3E-09 49.3 5.1 78 48-126 49-128 (227)
83 PRK06922 hypothetical protein; 97.6 0.00013 3.3E-09 49.0 4.9 78 44-124 417-497 (679)
84 COG1041 Predicted DNA modifica 97.5 0.00019 4.8E-09 48.0 4.9 105 24-133 174-280 (347)
85 COG0421 SpeE Spermidine syntha 97.5 0.00015 3.9E-09 48.6 4.3 157 32-208 58-231 (282)
86 PRK00121 trmB tRNA (guanine-N( 97.5 0.00022 5.7E-09 47.5 5.2 61 47-107 54-116 (229)
87 KOG3420 consensus 97.5 0.00014 3.7E-09 48.7 4.2 105 20-129 18-126 (185)
88 KOG2915 consensus 97.5 0.00027 6.9E-09 47.0 5.5 75 36-110 94-172 (314)
89 COG4106 Tam Trans-aconitate me 97.5 0.00018 4.5E-09 48.2 4.5 96 36-140 19-118 (257)
90 TIGR00479 rumA 23S rRNA (uraci 97.5 0.0004 1E-08 46.0 6.3 147 31-199 274-430 (434)
91 pfam02390 Methyltransf_4 Putat 97.4 0.00031 7.9E-09 46.6 5.6 61 47-107 20-83 (199)
92 TIGR01983 UbiG ubiquinone bios 97.4 0.00017 4.4E-09 48.2 4.3 51 41-91 78-128 (275)
93 COG2265 TrmA SAM-dependent met 97.4 0.00034 8.7E-09 46.4 5.8 107 31-139 273-385 (432)
94 COG4122 Predicted O-methyltran 97.4 0.00033 8.3E-09 46.5 5.7 75 33-107 45-124 (219)
95 KOG1499 consensus 97.4 0.00017 4.3E-09 48.3 4.0 65 45-110 58-124 (346)
96 COG2520 Predicted methyltransf 97.4 0.00038 9.7E-09 46.1 5.7 85 38-128 181-267 (341)
97 PRK11036 putative metallothion 97.4 0.00022 5.7E-09 47.6 4.4 60 47-107 44-105 (256)
98 pfam05958 tRNA_U5-meth_tr tRNA 97.4 0.00032 8.1E-09 46.6 5.0 160 29-211 176-353 (353)
99 COG0742 N6-adenine-specific me 97.3 0.001 2.7E-08 43.4 7.3 94 34-128 28-125 (187)
100 KOG1540 consensus 97.3 0.00042 1.1E-08 45.8 5.2 86 23-112 80-176 (296)
101 TIGR00091 TIGR00091 tRNA (guan 97.3 0.00026 6.6E-09 47.1 4.0 65 46-110 18-94 (216)
102 pfam01564 Spermine_synth Sperm 97.3 0.00049 1.2E-08 45.5 5.1 77 31-107 56-141 (240)
103 TIGR02081 metW methionine bios 97.3 0.0003 7.7E-09 46.7 3.9 74 37-119 5-86 (205)
104 PRK00050 mraW S-adenosyl-methy 97.2 0.00083 2.1E-08 44.0 5.6 82 27-108 3-86 (309)
105 pfam08242 Methyltransf_12 Meth 97.2 0.00034 8.7E-09 46.4 3.5 43 52-94 1-44 (98)
106 COG0116 Predicted N6-adenine-s 97.1 0.0015 3.8E-08 42.4 6.1 133 31-167 175-357 (381)
107 COG1189 Predicted rRNA methyla 97.1 0.0055 1.4E-07 38.9 8.6 154 38-203 69-232 (245)
108 COG2521 Predicted archaeal met 97.1 0.001 2.6E-08 43.4 4.8 112 17-133 107-222 (287)
109 pfam01795 Methyltransf_5 MraW 97.0 0.0014 3.5E-08 42.6 5.4 80 29-108 2-83 (310)
110 PRK11207 tellurite resistance 97.0 0.00044 1.1E-08 45.7 2.5 84 13-110 9-93 (198)
111 pfam03848 TehB Tellurite resis 97.0 0.00029 7.3E-09 46.9 1.3 85 13-111 9-93 (192)
112 KOG3191 consensus 96.9 0.0031 7.9E-08 40.4 6.2 98 29-132 26-125 (209)
113 COG0275 Predicted S-adenosylme 96.9 0.0029 7.5E-08 40.6 5.8 81 28-108 4-86 (314)
114 PRK00811 spermidine synthase; 96.8 0.0034 8.6E-08 40.2 5.5 77 32-108 60-146 (283)
115 pfam02636 DUF185 Uncharacteriz 96.7 0.0071 1.8E-07 38.2 6.8 54 40-93 10-72 (240)
116 KOG2361 consensus 96.7 0.0034 8.6E-08 40.2 4.9 89 16-104 30-131 (264)
117 PRK03612 spermidine synthase; 96.5 0.0052 1.3E-07 39.1 4.9 78 31-108 274-363 (516)
118 COG1565 Uncharacterized conser 96.5 0.013 3.2E-07 36.6 6.8 95 23-124 40-156 (370)
119 pfam05891 Hydroxy-O-Methy Puta 96.5 0.0065 1.7E-07 38.4 5.2 70 48-121 56-125 (217)
120 pfam05185 PRMT5 PRMT5 arginine 96.2 0.014 3.7E-07 36.3 5.7 62 50-111 189-257 (447)
121 KOG2187 consensus 96.1 0.019 4.8E-07 35.6 6.0 120 19-139 351-477 (534)
122 KOG1501 consensus 96.1 0.0076 1.9E-07 38.0 3.8 56 49-104 68-125 (636)
123 PRK10901 16S rRNA methyltransf 96.0 0.018 4.7E-07 35.6 5.6 76 30-106 229-305 (428)
124 pfam01861 DUF43 Protein of unk 96.0 0.1 2.6E-06 31.0 9.3 110 18-131 13-126 (243)
125 pfam05219 DREV DREV methyltran 96.0 0.024 6.1E-07 34.9 6.0 66 23-89 65-135 (265)
126 PRK12335 tellurite resistance 95.9 0.0023 5.9E-08 41.2 0.8 83 13-109 101-183 (289)
127 TIGR03438 probable methyltrans 95.9 0.066 1.7E-06 32.2 8.1 95 46-140 62-166 (301)
128 KOG2730 consensus 95.8 0.0056 1.4E-07 38.8 2.4 169 26-238 72-249 (263)
129 COG0286 HsdM Type I restrictio 95.8 0.033 8.3E-07 34.1 6.2 198 12-213 152-378 (489)
130 COG0357 GidB Predicted S-adeno 95.8 0.027 7E-07 34.6 5.7 62 48-109 68-131 (215)
131 PRK01581 speE spermidine synth 95.8 0.013 3.3E-07 36.6 4.1 79 46-127 138-225 (363)
132 KOG2899 consensus 95.7 0.013 3.3E-07 36.6 3.8 48 46-93 57-105 (288)
133 TIGR00095 TIGR00095 putative m 95.6 0.03 7.7E-07 34.3 5.5 108 16-131 30-146 (210)
134 TIGR00478 tly hemolysin A; Int 95.6 0.016 4.1E-07 36.0 3.9 69 46-115 76-152 (240)
135 KOG1663 consensus 95.6 0.022 5.6E-07 35.2 4.5 85 27-112 53-141 (237)
136 COG1092 Predicted SAM-dependen 95.5 0.051 1.3E-06 32.9 6.2 96 29-127 201-300 (393)
137 TIGR03587 Pse_Me-ase pseudamin 95.4 0.03 7.5E-07 34.4 4.8 80 26-111 23-104 (204)
138 pfam05971 Methyltransf_10 Prot 95.4 0.065 1.7E-06 32.2 6.5 119 12-133 20-156 (254)
139 pfam08003 Methyltransf_9 Prote 95.4 0.026 6.5E-07 34.7 4.4 51 35-85 103-153 (315)
140 TIGR00477 tehB tellurite resis 94.9 0.045 1.2E-06 33.2 4.5 101 37-150 63-163 (239)
141 pfam01728 FtsJ FtsJ-like methy 94.9 0.13 3.3E-06 30.3 6.8 53 46-108 20-73 (176)
142 KOG1271 consensus 94.8 0.023 5.9E-07 35.0 2.8 62 47-108 67-131 (227)
143 TIGR00417 speE spermidine synt 94.8 0.026 6.7E-07 34.7 3.0 165 31-211 56-241 (284)
144 KOG1975 consensus 94.7 0.05 1.3E-06 32.9 4.3 78 46-123 116-201 (389)
145 KOG4300 consensus 94.7 0.069 1.8E-06 32.1 4.9 126 42-184 71-201 (252)
146 pfam03291 Pox_MCEL mRNA cappin 94.6 0.15 3.8E-06 30.0 6.4 81 32-112 47-139 (327)
147 pfam00145 DNA_methylase C-5 cy 94.5 0.084 2.1E-06 31.5 5.1 69 50-127 2-70 (319)
148 COG4262 Predicted spermidine s 94.4 0.059 1.5E-06 32.5 4.1 62 46-107 288-358 (508)
149 PRK00536 speE spermidine synth 94.4 0.11 2.8E-06 30.9 5.4 72 21-93 35-117 (262)
150 KOG3010 consensus 94.4 0.044 1.1E-06 33.3 3.3 50 41-91 26-76 (261)
151 cd00315 Cyt_C5_DNA_methylase C 94.3 0.084 2.2E-06 31.5 4.7 72 50-128 2-73 (275)
152 pfam10294 Methyltransf_16 Puta 94.3 0.069 1.8E-06 32.1 4.3 47 45-92 42-89 (171)
153 pfam04445 DUF548 Protein of un 94.2 0.11 2.7E-06 30.9 5.1 69 38-107 64-144 (235)
154 PRK11188 rrmJ 23S rRNA methylt 94.2 0.078 2E-06 31.7 4.3 54 45-108 49-104 (209)
155 TIGR00006 TIGR00006 S-adenosyl 94.2 0.13 3.2E-06 30.4 5.3 78 30-107 7-90 (323)
156 COG3897 Predicted methyltransf 94.1 0.037 9.4E-07 33.7 2.5 91 35-131 67-157 (218)
157 pfam00891 Methyltransf_2 O-met 94.1 0.15 3.9E-06 29.9 5.6 58 43-106 97-155 (239)
158 TIGR00138 gidB methyltransfera 94.0 0.1 2.7E-06 31.0 4.7 88 24-111 25-119 (197)
159 pfam05206 TRM13 Methyltransfer 94.0 0.18 4.5E-06 29.5 5.8 105 35-140 6-119 (256)
160 TIGR03439 methyl_EasF probable 93.9 0.42 1.1E-05 27.2 7.6 95 45-139 74-184 (319)
161 pfam02527 GidB rRNA small subu 93.8 0.16 4E-06 29.8 5.3 79 48-127 49-129 (184)
162 KOG1661 consensus 93.8 0.068 1.7E-06 32.1 3.4 84 24-107 56-156 (237)
163 PRK00107 gidB glucose-inhibite 93.6 0.15 3.8E-06 30.0 4.9 67 42-108 64-132 (216)
164 pfam01189 Nol1_Nop2_Fmu NOL1/N 93.6 0.23 5.8E-06 28.8 5.8 72 38-109 75-149 (277)
165 KOG3924 consensus 93.6 0.15 3.7E-06 30.0 4.8 110 19-128 155-284 (419)
166 TIGR00452 TIGR00452 methyltran 93.6 0.086 2.2E-06 31.5 3.6 57 36-92 110-169 (316)
167 TIGR01444 fkbM_fam methyltrans 93.6 0.086 2.2E-06 31.5 3.6 53 50-102 1-59 (142)
168 TIGR00740 TIGR00740 methyltran 93.6 0.12 3.2E-06 30.5 4.4 81 29-111 45-130 (247)
169 pfam10672 Methyltrans_SAM S-ad 93.4 0.41 1E-05 27.3 6.8 81 25-107 101-186 (286)
170 PRK04184 DNA topoisomerase VI 93.2 0.73 1.9E-05 25.7 8.9 112 164-282 186-308 (533)
171 KOG2671 consensus 93.1 0.28 7.1E-06 28.3 5.6 186 10-211 172-368 (421)
172 COG0144 Sun tRNA and rRNA cyto 92.9 0.4 1E-05 27.3 6.2 72 36-107 145-220 (355)
173 TIGR02143 trmA_only tRNA (urac 92.8 0.11 2.7E-06 30.9 3.1 132 32-223 184-325 (361)
174 PRK10742 putative methyltransf 92.7 0.23 5.7E-06 28.9 4.7 69 38-107 77-157 (250)
175 KOG2651 consensus 92.7 0.22 5.5E-06 29.0 4.6 64 16-88 127-194 (476)
176 COG4976 Predicted methyltransf 92.5 0.13 3.2E-06 30.5 3.1 69 33-106 111-179 (287)
177 pfam05724 TPMT Thiopurine S-me 92.4 0.51 1.3E-05 26.7 6.1 161 32-200 8-184 (203)
178 PRK11727 putative SAM-dependen 92.3 0.32 8.2E-06 27.9 5.0 106 25-132 82-207 (326)
179 KOG1541 consensus 92.0 0.35 8.9E-06 27.7 4.9 65 23-88 21-90 (270)
180 PRK11933 yebU rRNA (cytosine-C 91.9 0.74 1.9E-05 25.7 6.5 83 25-107 90-176 (471)
181 TIGR00536 hemK_fam methyltrans 91.8 0.28 7.2E-06 28.3 4.3 93 41-135 119-217 (311)
182 TIGR00438 rrmJ ribosomal RNA l 91.8 0.18 4.6E-06 29.5 3.2 106 45-168 30-145 (192)
183 KOG3178 consensus 91.7 0.12 3.1E-06 30.5 2.3 56 48-107 178-233 (342)
184 TIGR02752 MenG_heptapren 2-hep 91.6 0.15 3.9E-06 29.9 2.7 80 33-112 31-113 (231)
185 PRK05179 rpsM 30S ribosomal pr 91.5 0.38 9.7E-06 27.5 4.6 47 234-280 12-64 (122)
186 PRK09496 trkA potassium transp 91.0 0.84 2.1E-05 25.3 6.0 52 51-108 3-56 (455)
187 TIGR03631 bact_S13 30S ribosom 90.7 0.48 1.2E-05 26.9 4.5 47 234-280 10-62 (113)
188 KOG0822 consensus 90.7 0.9 2.3E-05 25.1 5.9 61 50-110 370-436 (649)
189 PRK01544 bifunctional N5-gluta 90.7 0.44 1.1E-05 27.1 4.3 100 46-165 343-448 (503)
190 KOG1227 consensus 90.6 0.12 3.1E-06 30.5 1.4 60 47-106 194-256 (351)
191 KOG1709 consensus 90.6 0.47 1.2E-05 26.9 4.4 66 36-102 91-156 (271)
192 COG1568 Predicted methyltransf 90.0 0.89 2.3E-05 25.2 5.4 117 10-131 107-235 (354)
193 pfam06831 H2TH Formamidopyrimi 90.0 0.75 1.9E-05 25.6 5.0 52 227-278 16-76 (93)
194 COG0270 Dcm Site-specific DNA 89.7 0.9 2.3E-05 25.1 5.3 60 48-111 3-62 (328)
195 PRK11088 rrmA 23S rRNA methylt 89.7 0.83 2.1E-05 25.4 5.1 71 35-110 74-148 (272)
196 pfam11899 DUF3419 Protein of u 89.1 1 2.6E-05 24.8 5.2 63 40-106 28-90 (376)
197 COG2384 Predicted SAM-dependen 88.5 1.3 3.2E-05 24.2 5.3 142 37-198 8-153 (226)
198 pfam07091 FmrO Ribosomal RNA m 88.4 0.6 1.5E-05 26.2 3.6 62 46-107 101-163 (248)
199 COG0293 FtsJ 23S rRNA methylas 88.4 0.61 1.6E-05 26.2 3.6 56 45-110 43-100 (205)
200 pfam09243 Rsm22 Mitochondrial 88.3 1.1 2.9E-05 24.5 5.0 68 27-94 14-83 (275)
201 KOG3115 consensus 88.3 0.54 1.4E-05 26.5 3.3 61 47-107 60-129 (249)
202 PRK10445 endonuclease VIII; Pr 87.5 1.6 4.2E-05 23.5 5.4 48 231-278 148-204 (263)
203 pfam06080 DUF938 Protein of un 87.3 2 5E-05 23.0 5.7 83 26-109 4-90 (201)
204 pfam00416 Ribosomal_S13 Riboso 87.1 0.4 1E-05 27.3 2.1 34 247-280 29-62 (106)
205 pfam04989 CmcI Cephalosporin h 87.0 1.6 4.1E-05 23.6 5.1 81 23-107 8-93 (202)
206 PRK13945 formamidopyrimidine-D 86.9 0.72 1.8E-05 25.7 3.3 52 227-278 158-218 (283)
207 PRK04266 fibrillarin; Provisio 86.8 1.2 3.2E-05 24.3 4.4 64 42-106 67-131 (226)
208 KOG2352 consensus 86.6 0.36 9.2E-06 27.6 1.6 66 46-111 46-112 (482)
209 PRK13699 putative methylase; P 86.5 2.7 6.8E-05 22.2 6.0 10 218-227 149-158 (227)
210 PRK11524 putative methyltransf 86.3 2.8 7.1E-05 22.1 6.0 13 260-272 252-264 (284)
211 PTZ00134 40S ribosomal protein 86.2 0.97 2.5E-05 24.9 3.6 62 218-279 7-76 (154)
212 KOG2811 consensus 85.8 3 7.6E-05 21.9 6.2 93 48-140 183-282 (420)
213 KOG3987 consensus 85.8 0.55 1.4E-05 26.5 2.2 76 13-89 75-153 (288)
214 CHL00137 rps13 ribosomal prote 85.7 0.83 2.1E-05 25.4 3.1 33 247-279 31-63 (122)
215 pfam01555 N6_N4_Mtase DNA meth 85.7 2 5.2E-05 22.9 5.1 10 218-227 167-176 (221)
216 pfam01269 Fibrillarin Fibrilla 85.5 1.6 4.1E-05 23.6 4.5 63 42-105 68-132 (229)
217 PRK01103 formamidopyrimidine-D 83.8 2.7 7E-05 22.1 5.0 49 229-277 149-206 (273)
218 pfam03486 HI0933_like HI0933-l 83.0 3.9 0.0001 21.2 6.6 62 218-279 270-336 (405)
219 PRK11760 putative RNA 2'-O-rib 82.6 2.3 6E-05 22.6 4.3 86 45-142 208-296 (356)
220 PRK04053 rps13p 30S ribosomal 82.2 1.8 4.5E-05 23.3 3.6 60 220-279 4-71 (149)
221 pfam01234 NNMT_PNMT_TEMT NNMT/ 81.9 4.3 0.00011 20.9 5.8 83 10-93 18-102 (261)
222 TIGR00577 fpg formamidopyrimid 81.9 3.8 9.6E-05 21.3 5.1 55 224-278 157-220 (292)
223 PRK11783 rlmL 23S rRNA m(2)G24 80.2 1.5 3.9E-05 23.7 2.6 94 72-169 262-367 (716)
224 TIGR03629 arch_S13P archaeal r 79.8 2.5 6.4E-05 22.4 3.6 32 247-278 35-66 (144)
225 PTZ00146 fibrillarin; Provisio 79.1 3.7 9.5E-05 21.3 4.3 70 35-105 120-194 (296)
226 TIGR00446 nop2p NOL1/NOP2/sun 79.0 4.6 0.00012 20.7 4.8 66 43-108 71-141 (284)
227 KOG4589 consensus 78.5 2.9 7.5E-05 22.0 3.7 34 45-78 67-102 (232)
228 COG0099 RpsM Ribosomal protein 78.2 2.3 5.9E-05 22.6 3.1 34 246-279 30-63 (121)
229 TIGR01177 TIGR01177 conserved 77.9 2.1 5.2E-05 22.9 2.7 114 21-135 177-294 (358)
230 pfam03059 NAS Nicotianamine sy 77.5 4.8 0.00012 20.6 4.5 62 48-109 122-189 (277)
231 KOG2360 consensus 77.2 3.8 9.6E-05 21.3 3.9 69 39-107 205-276 (413)
232 PRK04148 hypothetical protein; 76.8 6.2 0.00016 19.9 5.1 71 33-110 2-73 (135)
233 KOG4058 consensus 76.7 4 0.0001 21.1 4.0 71 42-112 67-139 (199)
234 PRK10083 putative dehydrogenas 76.3 6.4 0.00016 19.8 5.3 52 38-89 151-205 (339)
235 TIGR02716 C20_methyl_CrtF C-20 75.4 6.3 0.00016 19.9 4.7 129 36-179 138-273 (306)
236 KOG2920 consensus 75.1 4.1 0.00011 21.0 3.7 54 30-83 96-152 (282)
237 TIGR03366 HpnZ_proposed putati 73.6 7.5 0.00019 19.4 5.4 53 37-89 110-164 (280)
238 pfam02254 TrkA_N TrkA-N domain 73.5 7.4 0.00019 19.4 4.6 74 56-135 4-79 (115)
239 TIGR00563 rsmB ribosomal RNA s 72.3 8.1 0.00021 19.2 5.3 62 33-94 257-320 (487)
240 pfam04816 DUF633 Family of unk 71.8 4 0.0001 21.1 2.9 83 51-141 1-87 (204)
241 KOG2793 consensus 70.6 6 0.00015 20.0 3.6 43 47-90 86-128 (248)
242 TIGR01793 cit_synth_euk citrat 70.2 3.3 8.5E-05 21.6 2.2 120 121-267 287-428 (430)
243 TIGR00630 uvra excinuclease AB 69.8 2.1 5.3E-05 22.9 1.1 222 46-279 584-878 (956)
244 pfam04672 DUF574 Protein of un 67.9 10 0.00026 18.6 4.9 81 27-107 27-134 (268)
245 KOG3806 consensus 67.9 3 7.7E-05 21.9 1.6 43 153-195 100-145 (177)
246 pfam11202 DUF2983 Protein of u 65.3 11 0.00029 18.3 5.3 37 31-68 124-160 (353)
247 KOG2940 consensus 64.4 7.1 0.00018 19.6 3.0 63 47-110 72-134 (325)
248 COG1889 NOP1 Fibrillarin-like 63.5 12 0.00031 18.1 4.8 62 43-105 72-134 (231)
249 PRK00349 uvrA excinuclease ABC 62.8 4 0.0001 21.1 1.5 24 46-69 555-578 (944)
250 COG0500 SmtA SAM-dependent met 62.2 11 0.00028 18.4 3.6 54 51-106 52-109 (257)
251 KOG2782 consensus 61.8 6.8 0.00017 19.7 2.5 55 31-85 27-82 (303)
252 COG0266 Nei Formamidopyrimidin 61.6 9.7 0.00025 18.7 3.2 56 224-279 145-209 (273)
253 TIGR03451 mycoS_dep_FDH mycoth 61.3 13 0.00034 17.8 5.0 51 39-89 168-220 (358)
254 KOG2198 consensus 61.0 14 0.00035 17.8 4.0 82 27-108 125-222 (375)
255 PRK05867 short chain dehydroge 60.3 13 0.00032 18.0 3.7 113 46-165 7-135 (253)
256 KOG1298 consensus 59.5 13 0.00032 18.0 3.5 32 50-82 47-80 (509)
257 PRK08277 D-mannonate oxidoredu 58.7 15 0.00038 17.6 3.9 62 46-108 8-72 (278)
258 PRK09422 alcohol dehydrogenase 58.2 15 0.00039 17.5 4.7 54 36-89 151-206 (338)
259 PRK12770 putative glutamate sy 58.2 11 0.00028 18.4 3.1 37 44-81 13-51 (350)
260 PRK12826 3-ketoacyl-(acyl-carr 58.1 15 0.00039 17.5 4.9 113 45-164 3-131 (253)
261 KOG2912 consensus 58.0 15 0.00039 17.5 5.0 78 52-130 107-191 (419)
262 pfam04339 DUF482 Protein of un 57.9 15 0.00039 17.5 4.5 57 216-278 167-224 (370)
263 PRK06181 short chain dehydroge 57.8 15 0.00039 17.5 3.7 60 48-108 1-63 (263)
264 TIGR00292 TIGR00292 thiazole b 57.8 15 0.00039 17.5 4.3 48 32-79 5-55 (283)
265 PRK09880 L-idonate 5-dehydroge 57.7 15 0.00039 17.5 4.8 51 39-89 161-213 (343)
266 PRK06346 consensus 57.6 16 0.0004 17.5 4.4 62 46-108 3-67 (251)
267 TIGR02733 desat_CrtD C-3',4' d 57.4 11 0.00029 18.3 3.0 30 49-79 2-33 (499)
268 PRK11749 putative oxidoreducta 57.3 16 0.0004 17.4 3.7 38 45-83 137-176 (460)
269 COG1635 THI4 Ribulose 1,5-bisp 56.4 16 0.0004 17.4 3.6 48 31-79 13-62 (262)
270 PRK12814 putative NADPH-depend 56.2 15 0.00039 17.5 3.5 37 45-82 190-228 (652)
271 TIGR03219 salicylate_mono sali 56.1 11 0.00028 18.4 2.7 34 50-83 2-37 (414)
272 PRK06198 short chain dehydroge 55.8 17 0.00042 17.3 4.7 64 45-108 3-69 (268)
273 pfam04072 LCM Leucine carboxyl 55.7 17 0.00042 17.3 5.7 81 31-112 52-139 (175)
274 PRK08163 salicylate hydroxylas 55.6 12 0.00031 18.1 2.9 37 47-84 3-41 (396)
275 PRK08217 fabG 3-ketoacyl-(acyl 55.5 17 0.00043 17.2 4.3 62 46-108 3-67 (253)
276 PRK05653 fabG 3-ketoacyl-(acyl 55.5 17 0.00043 17.2 4.2 112 47-165 4-131 (246)
277 PRK06139 short chain dehydroge 54.8 17 0.00044 17.2 4.1 64 44-108 2-68 (324)
278 PRK00635 excinuclease ABC subu 54.7 5.6 0.00014 20.2 1.1 25 45-69 875-899 (1809)
279 TIGR00519 asnASE_I L-asparagin 54.5 6.6 0.00017 19.8 1.4 29 250-281 300-329 (347)
280 TIGR03206 benzo_BadH 2-hydroxy 54.2 18 0.00045 17.1 4.2 112 47-165 2-129 (250)
281 KOG1562 consensus 53.7 14 0.00036 17.7 3.0 86 22-107 84-187 (337)
282 PRK05866 short chain dehydroge 53.6 18 0.00046 17.0 4.0 118 5-133 4-133 (290)
283 PRK07666 fabG 3-ketoacyl-(acyl 52.6 19 0.00048 16.9 4.4 63 45-108 3-68 (238)
284 PRK07677 short chain dehydroge 52.1 19 0.00049 16.9 4.6 61 47-108 2-65 (254)
285 KOG0163 consensus 52.0 19 0.00049 16.9 6.1 172 5-199 98-300 (1259)
286 TIGR01931 cysJ sulfite reducta 50.7 10 0.00026 18.5 1.9 180 19-210 291-489 (628)
287 TIGR00675 dcm DNA-cytosine met 50.7 20 0.00051 16.8 3.6 147 52-211 2-186 (425)
288 smart00827 PKS_AT Acyl transfe 50.5 19 0.0005 16.8 3.3 23 38-63 74-96 (298)
289 PRK07201 short chain dehydroge 49.0 21 0.00054 16.6 4.1 87 44-131 372-467 (663)
290 PRK12831 putative oxidoreducta 48.8 21 0.00055 16.6 3.5 40 45-85 137-178 (464)
291 PRK12771 putative glutamate sy 48.6 22 0.00055 16.6 3.6 39 45-84 134-174 (560)
292 PRK06847 hypothetical protein; 48.5 17 0.00043 17.2 2.7 35 48-83 4-40 (375)
293 PRK07208 hypothetical protein; 47.9 22 0.00056 16.5 3.2 37 48-85 3-41 (474)
294 PRK08213 gluconate 5-dehydroge 47.9 22 0.00057 16.5 5.3 117 39-163 4-136 (259)
295 PRK05650 short chain dehydroge 47.7 22 0.00057 16.5 4.1 58 50-108 2-62 (270)
296 PRK12810 gltD glutamate syntha 47.4 23 0.00058 16.4 3.7 36 46-82 141-178 (472)
297 PRK07233 hypothetical protein; 47.4 17 0.00044 17.1 2.6 15 120-134 244-258 (430)
298 pfam05869 Dam DNA N-6-adenine- 47.1 23 0.00058 16.4 4.7 91 100-211 50-150 (179)
299 PRK06753 hypothetical protein; 47.0 17 0.00044 17.2 2.6 35 50-84 2-37 (373)
300 PRK07814 short chain dehydroge 46.4 23 0.0006 16.3 4.2 87 46-133 8-103 (263)
301 pfam11968 DUF3321 Protein of u 46.2 24 0.0006 16.3 4.4 80 24-123 21-110 (220)
302 pfam01494 FAD_binding_3 FAD bi 45.2 19 0.00048 16.9 2.6 34 49-83 2-37 (349)
303 pfam01946 Thi4 Thi4 family. Th 44.4 25 0.00064 16.2 3.8 47 33-80 2-50 (229)
304 PRK06475 salicylate hydroxylas 44.3 18 0.00047 17.0 2.4 35 49-83 3-38 (400)
305 COG1233 Phytoene dehydrogenase 44.2 25 0.00064 16.1 3.3 32 49-81 4-37 (487)
306 COG3315 O-Methyltransferase in 43.9 26 0.00065 16.1 4.7 82 31-114 76-162 (297)
307 PRK04338 N(2),N(2)-dimethylgua 43.7 26 0.00066 16.1 6.9 96 40-139 44-141 (376)
308 PRK06370 mercuric reductase; V 43.7 25 0.00064 16.2 3.0 30 50-79 6-36 (459)
309 pfam07757 AdoMet_MTase Predict 43.5 16 0.00041 17.4 2.0 48 30-78 37-88 (112)
310 COG2604 Uncharacterized protei 43.5 21 0.00053 16.6 2.6 64 45-108 64-133 (594)
311 KOG2617 consensus 43.5 12 0.00031 18.1 1.3 110 152-279 346-456 (458)
312 pfam03141 DUF248 Putative meth 43.1 26 0.00067 16.0 5.3 102 26-128 91-223 (506)
313 pfam04378 DUF519 Protein of un 43.1 26 0.00067 16.0 3.3 147 51-211 61-214 (245)
314 PRK06718 precorrin-2 dehydroge 42.5 23 0.00059 16.4 2.7 58 46-109 8-68 (202)
315 PRK05786 fabG 3-ketoacyl-(acyl 42.1 27 0.00069 15.9 4.3 61 46-108 3-66 (238)
316 PRK12939 short chain dehydroge 42.0 27 0.0007 15.9 4.5 114 45-165 4-133 (250)
317 PRK07236 hypothetical protein; 41.8 25 0.00063 16.2 2.7 35 47-81 5-40 (386)
318 PRK07479 consensus 41.4 28 0.00071 15.9 4.6 61 47-108 4-67 (252)
319 pfam00076 RRM_1 RNA recognitio 41.1 16 0.0004 17.4 1.6 20 121-140 2-21 (70)
320 COG2081 Predicted flavoprotein 40.0 29 0.00075 15.7 7.3 69 203-279 261-333 (408)
321 PRK06200 2,3-dihydroxy-2,3-dih 40.0 29 0.00075 15.7 4.5 61 44-108 2-65 (263)
322 PRK06172 short chain dehydroge 39.9 29 0.00075 15.7 4.7 113 46-165 5-134 (253)
323 TIGR00692 tdh L-threonine 3-de 39.8 30 0.00075 15.7 3.6 61 45-107 159-221 (341)
324 PRK07538 hypothetical protein; 39.5 26 0.00066 16.1 2.5 33 50-82 2-35 (413)
325 pfam05783 DLIC Dynein light in 39.3 30 0.00077 15.7 4.2 138 50-203 201-338 (490)
326 KOG0024 consensus 39.2 30 0.00077 15.6 4.0 51 38-88 160-212 (354)
327 PRK06720 hypothetical protein; 39.1 30 0.00077 15.6 4.6 62 46-108 14-78 (169)
328 PRK07251 pyridine nucleotide-d 39.0 28 0.00071 15.9 2.6 33 49-82 158-192 (438)
329 PRK06124 gluconate 5-dehydroge 38.2 31 0.0008 15.6 4.3 112 47-165 13-140 (259)
330 KOG1122 consensus 38.2 31 0.0008 15.6 3.4 69 40-108 234-305 (460)
331 PRK13255 thiopurine S-methyltr 38.2 31 0.0008 15.6 5.9 154 31-190 22-191 (218)
332 COG3634 AhpF Alkyl hydroperoxi 38.1 31 0.0008 15.5 4.2 13 50-62 213-225 (520)
333 PRK06194 hypothetical protein; 37.7 32 0.00081 15.5 4.8 62 46-108 4-68 (301)
334 PRK07588 hypothetical protein; 37.6 29 0.00073 15.8 2.5 34 50-83 2-36 (391)
335 pfam05833 FbpA Fibronectin-bin 37.6 32 0.00082 15.5 4.6 41 47-88 92-139 (447)
336 PRK09186 flagellin modificatio 37.4 32 0.00082 15.5 4.5 62 46-108 2-67 (255)
337 PRK06912 acoL dihydrolipoamide 37.2 32 0.0008 15.5 2.7 28 51-79 3-32 (458)
338 TIGR02734 crtI_fam phytoene de 36.9 25 0.00064 16.2 2.1 45 53-109 3-50 (526)
339 PRK04176 ribulose-1,5-biphosph 36.6 33 0.00085 15.4 3.3 47 33-80 10-58 (257)
340 COG0178 UvrA Excinuclease ATPa 36.0 17 0.00044 17.2 1.2 23 46-68 547-569 (935)
341 PRK07576 short chain dehydroge 36.0 34 0.00087 15.3 4.1 62 46-108 6-70 (260)
342 COG4798 Predicted methyltransf 35.9 34 0.00087 15.3 3.6 40 41-80 42-83 (238)
343 PRK12429 3-hydroxybutyrate deh 35.8 34 0.00087 15.3 4.5 113 46-165 2-130 (258)
344 PRK06997 enoyl-(acyl carrier p 35.5 35 0.00088 15.3 4.3 62 44-107 2-68 (260)
345 COG1389 DNA topoisomerase VI, 35.4 35 0.00088 15.3 7.7 109 166-280 190-312 (538)
346 TIGR02085 meth_trns_rumB 23S r 35.3 35 0.00089 15.3 5.9 119 11-135 196-331 (386)
347 PRK08862 short chain dehydroge 34.7 36 0.00091 15.2 4.7 60 46-106 3-65 (227)
348 PRK06185 hypothetical protein; 34.5 35 0.00089 15.3 2.5 36 47-82 5-41 (409)
349 KOG3311 consensus 34.3 27 0.00068 16.0 1.9 11 167-177 122-132 (152)
350 PRK07045 putative monooxygenas 34.2 36 0.00092 15.2 2.8 34 48-82 5-40 (388)
351 COG1743 Adenine-specific DNA m 34.2 36 0.00093 15.2 2.9 47 45-92 88-134 (875)
352 PRK06505 enoyl-(acyl carrier p 34.0 37 0.00093 15.1 3.9 63 44-108 3-70 (271)
353 KOG2918 consensus 33.9 37 0.00093 15.1 5.6 76 46-123 86-166 (335)
354 TIGR03467 HpnE squalene-associ 33.6 37 0.00095 15.1 2.6 12 121-132 257-268 (430)
355 TIGR00128 fabD malonyl CoA-acy 33.5 33 0.00084 15.4 2.3 14 126-139 239-252 (295)
356 PRK08085 gluconate 5-dehydroge 33.5 37 0.00095 15.1 4.4 113 46-165 7-135 (254)
357 PRK05565 fabG 3-ketoacyl-(acyl 33.4 37 0.00095 15.1 4.7 113 46-165 3-132 (247)
358 PRK07035 short chain dehydroge 33.2 38 0.00096 15.1 4.1 61 47-108 7-70 (252)
359 pfam07669 Eco57I Eco57I restri 32.8 13 0.00034 17.9 0.2 12 120-131 5-16 (106)
360 TIGR03143 AhpF_homolog putativ 32.6 37 0.00095 15.1 2.4 54 46-100 141-197 (555)
361 KOG0114 consensus 31.9 29 0.00074 15.8 1.8 24 117-140 18-41 (124)
362 COG3129 Predicted SAM-dependen 31.9 40 0.001 14.9 3.8 95 34-133 59-169 (292)
363 COG4301 Uncharacterized conser 31.9 40 0.001 14.9 4.7 85 20-104 28-142 (321)
364 PRK08010 pyridine nucleotide-d 31.9 40 0.001 14.9 2.6 30 50-80 5-36 (441)
365 PRK07890 short chain dehydroge 31.6 40 0.001 14.9 4.7 62 46-108 3-67 (258)
366 PRK06292 dihydrolipoamide dehy 31.6 40 0.001 14.9 2.5 10 72-81 194-203 (460)
367 pfam05148 Methyltransf_8 Hypot 31.2 41 0.001 14.8 3.3 67 23-111 48-115 (214)
368 PRK06949 short chain dehydroge 30.9 41 0.001 14.8 4.3 113 46-165 7-135 (258)
369 TIGR01764 excise DNA binding d 30.9 41 0.001 14.8 3.6 38 3-41 11-48 (49)
370 PRK08690 enoyl-(acyl carrier p 30.6 42 0.0011 14.8 4.0 63 44-108 2-69 (261)
371 PRK06113 7-alpha-hydroxysteroi 30.4 42 0.0011 14.8 4.4 113 46-165 9-136 (255)
372 KOG2931 consensus 30.2 42 0.0011 14.7 4.8 86 29-140 102-190 (326)
373 PRK07478 short chain dehydroge 30.0 43 0.0011 14.7 4.8 62 46-108 4-68 (254)
374 pfam09040 H-K_ATPase_N Gastric 29.6 25 0.00063 16.2 1.1 13 50-62 9-21 (41)
375 PRK09853 putative selenate red 29.6 43 0.0011 14.7 3.6 39 45-84 547-587 (1032)
376 PRK07097 gluconate 5-dehydroge 29.5 43 0.0011 14.7 4.3 113 46-165 8-136 (265)
377 PRK06227 consensus 29.5 43 0.0011 14.7 4.9 113 46-165 3-131 (256)
378 TIGR02153 gatD_arch glutamyl-t 29.0 42 0.0011 14.8 2.2 43 149-195 196-241 (413)
379 TIGR03315 Se_ygfK putative sel 28.8 45 0.0011 14.6 3.3 37 46-83 535-573 (1012)
380 COG5085 Predicted membrane pro 28.8 39 0.00099 15.0 2.0 71 100-172 55-127 (230)
381 KOG4503 consensus 28.8 39 0.00099 15.0 2.0 71 100-172 55-127 (230)
382 PRK06079 enoyl-(acyl carrier p 28.6 45 0.0011 14.6 3.6 61 44-108 3-68 (252)
383 cd01452 VWA_26S_proteasome_sub 28.6 45 0.0011 14.6 4.4 15 47-61 47-62 (187)
384 PRK06467 dihydrolipoamide dehy 28.6 45 0.0011 14.6 2.4 29 50-79 6-36 (472)
385 pfam05673 DUF815 Protein of un 28.5 45 0.0012 14.6 3.5 74 35-109 40-120 (248)
386 KOG4212 consensus 28.2 46 0.0012 14.5 2.7 42 113-157 211-252 (608)
387 PRK13984 putative oxidoreducta 28.1 46 0.0012 14.5 3.6 36 46-82 281-318 (604)
388 smart00362 RRM_2 RNA recogniti 28.0 34 0.00086 15.4 1.6 21 120-140 2-22 (72)
389 PRK05976 dihydrolipoamide dehy 28.0 46 0.0012 14.5 2.8 32 49-81 176-209 (464)
390 KOG2078 consensus 27.9 28 0.00072 15.8 1.2 62 45-107 247-311 (495)
391 COG1063 Tdh Threonine dehydrog 27.6 47 0.0012 14.5 5.6 70 21-90 139-213 (350)
392 PRK07109 short chain dehydroge 27.3 48 0.0012 14.4 4.1 64 44-108 4-70 (338)
393 PRK11883 protoporphyrinogen ox 27.2 48 0.0012 14.4 3.0 17 120-136 266-282 (452)
394 KOG3201 consensus 27.1 24 0.00061 16.3 0.7 77 33-110 15-93 (201)
395 PRK07774 short chain dehydroge 26.9 48 0.0012 14.4 4.7 113 47-166 5-136 (250)
396 TIGR03452 mycothione_red mycot 26.9 48 0.0012 14.4 3.0 11 72-82 194-204 (452)
397 TIGR02517 type_II_gspD general 26.9 14 0.00035 17.8 -0.6 27 9-39 7-35 (697)
398 pfam06881 Elongin_A RNA polyme 26.5 23 0.00059 16.4 0.5 16 122-137 4-19 (108)
399 TIGR02477 PFKA_PPi diphosphate 26.2 29 0.00073 15.8 0.9 45 119-164 362-413 (566)
400 pfam04572 Gb3_synth Alpha 1,4- 26.0 37 0.00094 15.1 1.5 14 187-200 58-71 (135)
401 TIGR02315 ABC_phnC phosphonate 25.8 43 0.0011 14.7 1.8 24 250-273 229-252 (253)
402 TIGR02465 chlorocat_1_2 chloro 25.7 32 0.00081 15.5 1.1 173 9-207 14-234 (258)
403 PRK06500 short chain dehydroge 25.6 51 0.0013 14.2 4.7 85 45-133 3-96 (249)
404 PRK12825 fabG 3-ketoacyl-(acyl 25.5 51 0.0013 14.2 4.4 64 44-108 3-70 (250)
405 PRK05868 hypothetical protein; 25.5 51 0.0013 14.2 2.8 35 49-84 2-38 (372)
406 COG1954 GlpP Glycerol-3-phosph 25.4 51 0.0013 14.2 3.8 20 121-141 124-143 (181)
407 TIGR02079 THD1 threonine dehyd 25.2 41 0.0011 14.8 1.6 144 36-212 159-310 (415)
408 KOG0108 consensus 25.1 41 0.001 14.8 1.6 11 31-41 68-78 (435)
409 PRK05876 short chain dehydroge 25.0 52 0.0013 14.2 4.4 62 46-108 4-68 (275)
410 PRK05249 soluble pyridine nucl 25.0 52 0.0013 14.2 2.6 31 50-81 178-210 (465)
411 pfam09012 FeoC FeoC like trans 24.9 53 0.0013 14.2 2.6 37 8-44 3-39 (68)
412 pfam02719 Polysacc_synt_2 Poly 24.8 53 0.0013 14.2 3.2 53 56-108 5-63 (280)
413 PRK08415 enoyl-(acyl carrier p 24.7 53 0.0013 14.1 4.0 61 46-108 3-68 (274)
414 PRK12837 3-ketosteroid-delta-1 24.6 47 0.0012 14.5 1.8 31 50-82 11-43 (515)
415 pfam00698 Acyl_transf_1 Acyl t 24.5 47 0.0012 14.4 1.8 11 54-64 88-98 (319)
416 PRK07326 short chain dehydroge 24.3 54 0.0014 14.1 3.9 84 47-133 4-96 (235)
417 PRK08063 enoyl-(acyl carrier p 23.8 55 0.0014 14.0 4.2 113 46-165 2-131 (250)
418 PRK07818 dihydrolipoamide dehy 23.5 56 0.0014 14.0 2.7 12 51-62 7-18 (467)
419 PRK13394 3-hydroxybutyrate deh 23.4 56 0.0014 14.0 4.6 112 45-163 4-131 (262)
420 PRK06116 glutathione reductase 23.3 56 0.0014 14.0 2.9 32 49-81 168-201 (450)
421 TIGR01238 D1pyr5carbox3 delta- 23.1 28 0.00071 15.9 0.4 119 124-274 307-428 (525)
422 TIGR03201 dearomat_had 6-hydro 22.9 57 0.0015 13.9 3.8 48 41-89 160-209 (349)
423 COG5459 Predicted rRNA methyla 22.5 42 0.0011 14.8 1.2 60 27-86 75-154 (484)
424 PRK05557 fabG 3-ketoacyl-(acyl 22.5 58 0.0015 13.9 4.5 61 47-108 4-68 (248)
425 PRK08589 short chain dehydroge 22.4 59 0.0015 13.9 4.6 62 45-108 3-67 (272)
426 KOG1928 consensus 22.4 37 0.00095 15.1 0.9 27 53-81 170-196 (409)
427 KOG1596 consensus 21.8 60 0.0015 13.8 3.6 64 41-105 150-215 (317)
428 PRK12769 putative oxidoreducta 21.6 61 0.0016 13.8 3.4 35 47-82 326-362 (654)
429 PRK12809 putative oxidoreducta 21.5 61 0.0016 13.7 3.3 35 47-82 309-345 (639)
430 PRK05396 tdh L-threonine 3-deh 21.5 61 0.0016 13.7 4.2 43 46-88 162-206 (341)
431 PRK13748 putative mercuric red 21.3 62 0.0016 13.7 3.2 31 49-80 99-131 (561)
432 pfam03686 UPF0146 Uncharacteri 21.3 62 0.0016 13.7 5.1 61 35-109 4-65 (127)
433 PRK09291 short chain dehydroge 21.3 62 0.0016 13.7 4.8 110 48-165 2-122 (257)
434 TIGR00497 hsdM type I restrict 21.1 62 0.0016 13.7 3.4 119 12-131 187-321 (516)
435 PRK07062 short chain dehydroge 20.8 63 0.0016 13.7 4.6 62 46-108 6-72 (265)
436 PRK11096 ansB L-asparaginase I 20.5 64 0.0016 13.6 2.3 49 89-138 97-151 (347)
437 TIGR01642 U2AF_lg U2 snRNP aux 20.5 49 0.0012 14.4 1.2 19 121-139 339-357 (577)
438 PRK10669 putative cation:proto 20.4 64 0.0016 13.6 4.7 76 49-131 418-495 (558)
439 PRK07846 mycothione/glutathion 20.3 65 0.0017 13.6 2.8 33 50-83 170-204 (453)
440 PRK12842 putative succinate de 20.2 65 0.0017 13.6 2.4 31 50-81 7-39 (567)
441 PRK12839 hypothetical protein; 20.0 66 0.0017 13.6 2.3 32 49-81 10-43 (574)
No 1
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=100.00 E-value=0 Score=581.34 Aligned_cols=254 Identities=41% Similarity=0.679 Sum_probs=230.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHH--HHHC
Q ss_conf 984336584112398999999997198999879997589882346775023525-9984255430368878753--2200
Q gi|254780398|r 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARK-VIVIEKDQQFFPILKDISS--QHPN 95 (284)
Q Consensus 19 ~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~-v~aiEiD~~~~~~l~~~~~--~~~~ 95 (284)
++|||+||||||+|++++++||+.+++.++|.|||||||.|+||..|++++ .+ |+|||+|+++++.|++.+. .. +
T Consensus 1 ~~p~K~lGQnFL~D~~~~~~Iv~~~~~~~~~~vlEIGPG~G~LT~~Ll~~~-~~~v~aiEiD~~l~~~L~~~~~~~~~-~ 78 (277)
T TIGR00755 1 FRPRKSLGQNFLIDESVIQKIVEAANVLENDVVLEIGPGLGALTEPLLKRA-KKLVTAIEIDPRLAEILRKLLSEKLY-E 78 (277)
T ss_pred CCCCCCCCCCEEECHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHC-CCEEEEEEECHHHHHHHHHHCCCCCC-C
T ss_conf 977642276024087899999997437899779997388207899999825-98489997267899998752154332-4
Q ss_pred CCCCCHHHHCCCCHH---HHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHH
Q ss_conf 122000000014315---52133222011202322467889999985201000000110203344788753012312332
Q gi|254780398|r 96 RLEIIQDDALKVDFE---KFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 (284)
Q Consensus 96 ~~~ii~~Dal~~d~~---~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg 172 (284)
+++||+||||++|++ ++... .+.+|||||||||||||+++++... ..+.++.||||+|||||+||+|+||||+||
T Consensus 79 ~~~~i~~Dalk~~~~~~~~~~~~-~~~~vv~NLPY~Issp~~~~Ll~~~-~~~~~~~~vlM~QkEvA~Rl~A~p~sk~Yg 156 (277)
T TIGR00755 79 NLEVIEGDALKVDLNSLEDFPKE-DKLKVVSNLPYNISSPLIFKLLKEE-EKPKFRLAVLMVQKEVAERLTAKPGSKDYG 156 (277)
T ss_pred CEEEEECCEEEECCCHHHHCCCC-CCCEEEEECCCCHHHHHHHHHHHHH-CCCCCCEEEEEEEHHHHHHHCCCCCCCCCH
T ss_conf 25787144454123204331678-9857985077432489999999861-364447778874267777651899984100
Q ss_pred HHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCC----C-CCCHHHHHHHHHHHHCCCCHHHHHHHH-----
Q ss_conf 345432013320120001100001057875788730125885----5-347678999999997273138999876-----
Q gi|254780398|r 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNP----I-PCCLESLKKITQEAFGKRRKTLRQSLK----- 242 (284)
Q Consensus 173 ~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~----~-~~~~~~~~~~~~~~F~~RRK~l~~~L~----- 242 (284)
+|||++|++|+|+++++|+|+||+|+|||+||||+|+|++.. . ..+.+.|++|++.+|+||||+++|+|+
T Consensus 157 ~LSV~~q~~~~V~~v~~V~P~aF~P~PkV~Savv~l~~~~~~p~~~~~~~~~~~~~~l~~~~F~~RRK~l~n~L~~~~~~ 236 (277)
T TIGR00755 157 RLSVLVQYLANVEIVFKVPPSAFYPPPKVDSAVVRLIPRENKPKPLPLVKDIALFEKLLKAAFSQRRKTLRNNLKNSLKD 236 (277)
T ss_pred HHHHHHHHHHEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 69888746522268687378344288820489999987589998511367799999999998617871015556542221
Q ss_pred HCCCH----HHHHHCCCCCC---CCHHCCCHHHHHHHHHHH
Q ss_conf 31817----89997877746---571208999999999998
Q gi|254780398|r 243 RLGGE----NLLHQAGIETN---LRAENLSIEDFCRITNIL 276 (284)
Q Consensus 243 ~~~~~----~~l~~~~i~~~---~R~e~Ls~~~~~~L~~~l 276 (284)
..... ..+...+|+.+ .|||+|+++||++|++.+
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~R~e~L~~~df~~L~~~l 277 (277)
T TIGR00755 237 NLLAKEKLEEVLEQLGLDPTKLNARAEQLSPEDFLRLANLL 277 (277)
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHCCHHCCCHHHHHHHHHHC
T ss_conf 01112456667887088865000661114889999999609
No 2
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=100.00 E-value=0 Score=562.03 Aligned_cols=261 Identities=44% Similarity=0.710 Sum_probs=242.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 79999998189843365841123989999999971989998799975898823467750235259984255430368878
Q gi|254780398|r 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 9 ~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284)
.++++++.++++|||+||||||+|++++++||+.+++.++|.|||||||+|+||+.|++.++ +|+|||+|+++++.|++
T Consensus 1 ~~~~~l~~~~~~~kK~lGQnFL~d~~ii~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~ 79 (267)
T PRK00274 1 RTRELLEHYGHRAKKSLGQNFLIDENIIDKIVRAADLQPGDRVLEIGPGLGALTEPLLERAA-KVTAIEIDRDLAPILRE 79 (267)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCC-CEEEEECCHHHHHHHHH
T ss_conf 97899987699988777822148989999999960899999079963888889999996268-05886368899999850
Q ss_pred HHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH
Q ss_conf 75322001220000000143155213322201120232246788999998520100000011020334478875301231
Q gi|254780398|r 89 ISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS 168 (284)
Q Consensus 89 ~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~ 168 (284)
. +++++++||||++|++++.. ..+++|||||||||||+|+.+|+.... .+..|++|||||||+||+|+||+
T Consensus 80 ~-----~~~~ii~~D~L~~~~~~~~~-~~~~~vvgNLPY~Iss~il~~~l~~~~---~~~~~vlmvQkEvA~Ri~a~p~~ 150 (267)
T PRK00274 80 T-----DNLTIIEGDALKVDLEELAE-GQPLKVVANLPYNISTPLLFKLLEEAP---PIRDMVLMLQKEVAERIVAKPGS 150 (267)
T ss_pred C-----CCEEEEECHHHHCCHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4-----78699965066478677456-787279955883031289999985475---41240011158777776247999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCH-
Q ss_conf 2332345432013320120001100001057875788730125885534767899999999727313899987631817-
Q gi|254780398|r 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE- 247 (284)
Q Consensus 169 k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~- 247 (284)
++||+||+++|++|+++.+++|||++|+|+|||||+||+++|++.+...+.+.|+++++.+|++|||+|+|+|+...+.
T Consensus 151 k~y~~LSv~~q~~~~~~~~~~V~~~~F~P~PkVdS~vi~l~p~~~~~~~~~~~~~~~~~~~F~~RRK~l~n~Lk~~~~~~ 230 (267)
T PRK00274 151 KAYGRLSVLLQYYADVEKVFDVPPSAFYPPPKVDSAVVRLVPKEPPPVKDEELFFKVVKAAFNQRRKTLRNNLKNLAGKE 230 (267)
T ss_pred CCCCHHHHHHHHHHHEEEEEEECHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHH
T ss_conf 75168899999986331211576776567987417999999789883567999999999998146489999998752888
Q ss_pred ---HHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf ---89997877746571208999999999998636
Q gi|254780398|r 248 ---NLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 248 ---~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
.+++.+|++++.|||+|+++||++|++.+++.
T Consensus 231 ~~~~~l~~~~i~~~~RpeeLs~~~~~~L~~~l~~~ 265 (267)
T PRK00274 231 LLEELLEALGIDPNRRAETLSVEEFVRLANALADL 265 (267)
T ss_pred HHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 89999998697967782439999999999999997
No 3
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=548.63 Aligned_cols=254 Identities=42% Similarity=0.676 Sum_probs=235.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 89843365841123989999999971989998799975898823467750235259984255430368878753220012
Q gi|254780398|r 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 (284)
Q Consensus 18 ~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~ 97 (284)
+++|+|+||||||+|++++++||+.+++.++|+|||||||.|+||+.|++++ ..|+|||+|+++++.|++.+... +++
T Consensus 1 ~~k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~-~n~ 78 (259)
T COG0030 1 MFRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAPY-DNL 78 (259)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCCC-CCE
T ss_conf 9988877664541478799999985578999869997898778899999606-95799996889999999750656-655
Q ss_pred CCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 20000000143155213322201120232246788999998520100000011020334478875301231233234543
Q gi|254780398|r 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 (284)
Q Consensus 98 ~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~ 177 (284)
++|+||||++|++++. .+++|||||||||||||+++|++.... ++.|++|+|||||+||+|+||+++||+|||+
T Consensus 79 ~vi~~DaLk~d~~~l~---~~~~vVaNlPY~Isspii~kll~~~~~---~~~~v~M~QkEvaeRl~A~pgsk~Yg~LsV~ 152 (259)
T COG0030 79 TVINGDALKFDFPSLA---QPYKVVANLPYNISSPILFKLLEEKFI---IQDMVLMVQKEVAERLVAKPGSKDYGRLSVL 152 (259)
T ss_pred EEEECCHHCCCCHHHC---CCCEEEECCCCCCCHHHHHHHHHCCCC---CCEEEEEEHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 9994724247513515---788899808976567999999846676---5428998299999997178898652066554
Q ss_pred HCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCC-CC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC-HHHHHHCC
Q ss_conf 201332012000110000105787578873012588-55-3476789999999972731389998763181-78999787
Q gi|254780398|r 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN-PI-PCCLESLKKITQEAFGKRRKTLRQSLKRLGG-ENLLHQAG 254 (284)
Q Consensus 178 ~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~-~~-~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~-~~~l~~~~ 254 (284)
+|++|+++++++|||+||+|+|||||+||+++|++. +. ..+.+.|+++++.+|+||||+|+|+|+.... .++++.++
T Consensus 153 ~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~~~~~l~~~~ 232 (259)
T COG0030 153 VQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNLFGLEEVLEAAG 232 (259)
T ss_pred HEEEEEEEEEEEECHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 01058889998877565899997527999999678887764479999999999986006889998775411999998669
Q ss_pred CCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 7746571208999999999998636
Q gi|254780398|r 255 IETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 255 i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
++++.|||+|+++||++|++.+...
T Consensus 233 i~~~~R~e~ls~~~f~~L~~~l~~~ 257 (259)
T COG0030 233 IDPNARAENLSPEDFLKLANALKGF 257 (259)
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 9811395659999999999987640
No 4
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=100.00 E-value=0 Score=543.09 Aligned_cols=254 Identities=33% Similarity=0.503 Sum_probs=231.3
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-
Q ss_conf 9818984336584112398999999997198999879997589882346775023525998425543036887875322-
Q gi|254780398|r 15 SHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH- 93 (284)
Q Consensus 15 ~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~- 93 (284)
.+||++|+|+||||||+|++++++||+.+++.++|.|||||||+|+||..|+++ +++|+|||+|++++..|++.+...
T Consensus 6 ~k~G~~~~K~lGQnFL~D~~i~~~Iv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~~ 84 (296)
T PTZ00338 6 SKSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSP 84 (296)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHCCC
T ss_conf 667987898776220589899999999607898995799668542999999835-8917999948899999999985144
Q ss_pred -HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHH
Q ss_conf -0012200000001431552133222011202322467889999985201000000110203344788753012312332
Q gi|254780398|r 94 -PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 (284)
Q Consensus 94 -~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg 172 (284)
.+++++++||||++|++.+. +|||||||||||||+++++.+.. .++.|++|+|||||+||+|+||+|+||
T Consensus 85 ~~~n~~ii~~D~Lk~d~~~~~------~vVaNLPY~ISSpii~kll~~~~---~~~~~vlM~QkEvA~Rl~A~pg~k~Yg 155 (296)
T PTZ00338 85 LASKLQVIEGDALKTEFPYFD------VCVANVPYQISSPLVFKLLSHRP---LFRCAVLMFQKEFALRLLAQPGDEAYC 155 (296)
T ss_pred CCCCCEEECCHHHHCCCCCCC------EEEECCCCHHHHHHHHHHHHCCC---CCCCEEEEEHHHHHHHHHCCCCCCCCC
T ss_conf 566735770505318564114------46635870447999999985598---532035654087778884478987513
Q ss_pred HHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC------
Q ss_conf 34543201332012000110000105787578873012588553476789999999972731389998763181------
Q gi|254780398|r 173 RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGG------ 246 (284)
Q Consensus 173 ~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~------ 246 (284)
+|||++|++|+++++++|||++|+|+|||||+||+|+|++.+...+.+.|+.++|.+|+||||||+|+|++...
T Consensus 156 ~LSV~~q~~~~~~~~~~V~~~~F~P~PkVdSavv~l~p~~~~~~~~~~~~~~lvr~~F~~RRKtLrn~~k~~~~~~~L~~ 235 (296)
T PTZ00338 156 RLSVNTQLLSRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLVRICFSRKNKTLSAIFKTKSVLQTLEH 235 (296)
T ss_pred HHHHHHHHHCCCCEEEEECHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 89999999707537689874437899984079999998999999899999999999972648899987560057888887
Q ss_pred ------------------------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf ------------------------789997877746571208999999999998636
Q gi|254780398|r 247 ------------------------ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 247 ------------------------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
.++++++|++ ..|||+||.+||++|++.+.+.
T Consensus 236 n~~~~~~~~~~~~~~~~~~~ke~i~~~L~~~~~~-~~Rae~Lsi~dfi~L~~~f~~~ 291 (296)
T PTZ00338 236 NYKSYCTMEGKVPVGKPAEFKEHIIEILEDPGMF-EKRSRTLDIDDFLKLLCAFNKK 291 (296)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHC
T ss_conf 4666654225676553067999999999856963-2571008999999999999984
No 5
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=100.00 E-value=0 Score=538.26 Aligned_cols=253 Identities=29% Similarity=0.422 Sum_probs=232.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 89843365841123989999999971989998799975898823467750235259984255430368878753220012
Q gi|254780398|r 18 KIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRL 97 (284)
Q Consensus 18 ~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~ 97 (284)
..+|||+||||||+|++++++|++.+++.++|.|||||||+|+||+.|+++ +++|+|||+|+++++.|++.+...+ ++
T Consensus 1 ~~r~kK~lGQnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~L~~~-~~~v~aiE~D~~l~~~L~~~~~~~~-~~ 78 (258)
T pfam00398 1 ANKGRRSYGQNFLTNKKVINRIVDKANLQESDTVLEIGPGKGALTEELAKR-AKQVVAIEIDPRLAKRLQKKLALHP-NV 78 (258)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCCCC-CE
T ss_conf 998856677531389999999999708999997999799623999999961-6947999544779999998644289-77
Q ss_pred CCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 20000000143155213322201120232246788999998520100000011020334478875301231233234543
Q gi|254780398|r 98 EIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVL 177 (284)
Q Consensus 98 ~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~ 177 (284)
+++++|||++|++. ..+++|||||||||||+|+.+|+.... ..+..|++|+|||||+||+|+||+|+||+|||+
T Consensus 79 ~ii~~D~l~~d~~~----~~~~~vvgNLPY~Iss~il~~ll~~~~--~~~~~~vlmvQkEvA~Rl~a~pg~k~y~~LSv~ 152 (258)
T pfam00398 79 EVVHQDFLKFSFPK----HEPFLVVGNIPYNITTPIVKKLLFEPR--FGRVKMLLVVQKEFARRLLARPGSKIYSRLTVL 152 (258)
T ss_pred EEEECCHHCCCCCC----CCCEEEEECCCCCCCHHHHHHHHHCCC--CCCCEEEEEEEHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 99966301057545----786168944886341789999997047--672048999889999998558998651368999
Q ss_pred HCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCH---HHHHH
Q ss_conf 20133201200011000010578757887301258855--34767899999999727313899987631817---89997
Q gi|254780398|r 178 TGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---NLLHQ 252 (284)
Q Consensus 178 ~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~--~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~---~~l~~ 252 (284)
+|++|+++++++|||++|+|+|||||+||+++|++.+. ..+.+.|+++++.+|++|||+|+|+|++..+. +++..
T Consensus 153 ~q~~~~~~~l~~V~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~~~v~~~F~~RRK~L~n~L~~~~~~~~~~~l~~ 232 (258)
T pfam00398 153 TEPFTDIKLVAKVPRSSFRPPPKVDSALVRLERRDHPLLPVKDLKKYDYLVRKLFNGKGRSLFTSLRRLFPGGQVQALSK 232 (258)
T ss_pred HHHHHEEEEEEEECHHHEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99974051522855141465998747999999898887872349999999999981163789999987388079999998
Q ss_pred CCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 87774657120899999999999863
Q gi|254780398|r 253 AGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 253 ~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
+|++++.|||+|+++||++|++.|.+
T Consensus 233 ~gi~~~~R~e~Ls~e~~~~L~~~l~k 258 (258)
T pfam00398 233 TRINDNALVGKLSPEQWLTIFKELAK 258 (258)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 77698888615999999999999709
No 6
>KOG0821 consensus
Probab=100.00 E-value=0 Score=390.31 Aligned_cols=274 Identities=34% Similarity=0.589 Sum_probs=250.2
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 84479999998189843365841123989999999971989998799975898823467750235259984255430368
Q gi|254780398|r 6 KSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 (284)
Q Consensus 6 ~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~ 85 (284)
+-.+||++++.|+++++|.|+||||.|.++.++||++++...+++|+|||||+|.+|+.|+..++..+..||+|.+|.+-
T Consensus 9 PlPtiRe~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~ 88 (326)
T KOG0821 9 PLPTIREIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPG 88 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHCCHHHEEEEEECCCCCHH
T ss_conf 97059999999999999988676765537889999861655524058846998720489886252352666315664747
Q ss_pred HHHHHHHHHCCCCCCHHHHCCCCHHHHCCCC--CC-------EEEEECCCHHHHHHHHHHHHHHH-----CCCCCCCHHH
Q ss_conf 8787532200122000000014315521332--22-------01120232246788999998520-----1000000110
Q gi|254780398|r 86 LKDISSQHPNRLEIIQDDALKVDFEKFFNIS--SP-------IRIIANLPYNIGTRLLFNWISAD-----TWPPFWESLT 151 (284)
Q Consensus 86 l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~--~~-------~~vvgNLPYnIss~Il~~ll~~~-----~~~~~~~~~v 151 (284)
|+-+....+.++.|+++|+|++++.+.+..+ .| .++|||||+|||||++.+|+..- .+..+...|+
T Consensus 89 LQ~L~EAa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mT 168 (326)
T KOG0821 89 LQMLSEAAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMT 168 (326)
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHCCHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEECCCEEE
T ss_conf 88887538750575200577766987662221286546887357864677444542889987633324687065130068
Q ss_pred HEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf 20334478875301231233234543201332012000110000105787578873012588553-47678999999997
Q gi|254780398|r 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIP-CCLESLKKITQEAF 230 (284)
Q Consensus 152 lmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~-~~~~~~~~~~~~~F 230 (284)
+++|+|||+|+||+.|++..+||||++|++++++++|.+|.+||.|+|+||-.||+++|.+.+.. ..++.++++++..|
T Consensus 169 LTFQ~EVAeRlCaP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~~F~lvEkV~R~vF 248 (326)
T KOG0821 169 LTFQKEVAERLCAPTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQPFKLVEKVVRNVF 248 (326)
T ss_pred EEHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 86599999985376465420235577776427538997157512668764034698654578554687799999999999
Q ss_pred CCCCHHHHHHHHHCCCHH--------HHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 273138999876318178--------9997877746571208999999999998636
Q gi|254780398|r 231 GKRRKTLRQSLKRLGGEN--------LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 231 ~~RRK~l~~~L~~~~~~~--------~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
+.|.|.++..|+..++++ .++.++++++.||-+|++|||..||+.+.++
T Consensus 249 ~~RQKY~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~r~~~L~iEQf~~LAE~Y~E~ 305 (326)
T KOG0821 249 QFRQKYCHRGLRTLFPEEQRLESTGRLLELADIDPTLRPRQLSIEQFKSLAEVYREM 305 (326)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 999999871543459867888889999987137886574330199999999999987
No 7
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=0 Score=386.16 Aligned_cols=169 Identities=37% Similarity=0.605 Sum_probs=157.4
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC
Q ss_conf 99999997198999879997589882346775023525998425543036887875322001220000000143155213
Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~ 114 (284)
++++||+.+++.++|.|||||||+|+||+.|++++ ++|+|||+|+++++.|+++++..+ +++++++|||++||++.
T Consensus 1 ii~kIv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~-n~~ii~~D~L~~~~~~~-- 76 (169)
T smart00650 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAAD-NLTVIHGDALKFDLPKL-- 76 (169)
T ss_pred CHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC-CCCCEEECCHHHHHHHHHHHCCCC-CEEEEECCHHCCCCCCC--
T ss_conf 98899886389994979996897029999999731-635316378899999998641079-77999571112553115--
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCE
Q ss_conf 32220112023224678899999852010000001102033447887530123123323454320133201200011000
Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHV 194 (284)
Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~ 194 (284)
.+++|||||||||||+|+++++.... .++.|++|+|||||+|++|+||+|+||+||+++|++|+++++++|||+|
T Consensus 77 --~~~~iv~NLPY~Iss~il~~ll~~~~---~~~~~~lm~QkEvA~Ri~a~p~~k~y~~LSv~~q~~~~~~~~~~V~~~~ 151 (169)
T smart00650 77 --QPYKVVGNLPYNISTPILFKLLEEPP---AFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEA 151 (169)
T ss_pred --CCCEEEECCCCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEEEEEEECHHH
T ss_conf --87369934763011899999986265---4126665539999999863789855149999999874078978998665
Q ss_pred ECCCCCCCEEEEEECCCC
Q ss_conf 010578757887301258
Q gi|254780398|r 195 FFPSPKVTSTVIHFIPHL 212 (284)
Q Consensus 195 F~P~PkVdS~vi~l~pk~ 212 (284)
|+|+|||||+||+++||+
T Consensus 152 F~P~PkVdS~vv~l~pkp 169 (169)
T smart00650 152 FRPPPKVDSAVVRLERRP 169 (169)
T ss_pred CCCCCCCEEEEEEEEECC
T ss_conf 789998408999999793
No 8
>KOG0820 consensus
Probab=100.00 E-value=0 Score=374.85 Aligned_cols=254 Identities=28% Similarity=0.455 Sum_probs=225.4
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99818984336584112398999999997198999879997589882346775023525998425543036887875322
Q gi|254780398|r 14 LSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 (284)
Q Consensus 14 l~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284)
....+++++|.+|||.|.++.+++.|++.+++.+.|.|||||||+|.||..|++++ ++|+|+|+|++|+..|++.+.+.
T Consensus 25 ~~~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gt 103 (315)
T KOG0820 25 PNSGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGT 103 (315)
T ss_pred CCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC-CEEEEEECCCHHHHHHHHHHCCC
T ss_conf 55457665543014555477889999860478998779995798778999999720-84899940807899999986699
Q ss_pred H--CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHH
Q ss_conf 0--01220000000143155213322201120232246788999998520100000011020334478875301231233
Q gi|254780398|r 94 P--NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 (284)
Q Consensus 94 ~--~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Y 171 (284)
+ +++++++||+++.|++.+. .||+|+||+|||+.++++|... +.++++++|+|+|+|.|++|+||++.|
T Consensus 104 p~~~kLqV~~gD~lK~d~P~fd------~cVsNlPyqISSp~vfKLL~~~---~~fr~AvlmfQ~Efa~RLva~pgd~~Y 174 (315)
T KOG0820 104 PKSGKLQVLHGDFLKTDLPRFD------GCVSNLPYQISSPLVFKLLLHR---PVFRCAVLMFQREFALRLVARPGDSLY 174 (315)
T ss_pred CCCCEEEEEECCCCCCCCCCCC------EEECCCCCCCCCHHHHHHCCCC---CCCCEEEEEHHHHHHHHHCCCCCCCHH
T ss_conf 8656046885031257885103------1122698533678899862788---776023440256665551358898411
Q ss_pred HHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCH----
Q ss_conf 2345432013320120001100001057875788730125885534767899999999727313899987631817----
Q gi|254780398|r 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGE---- 247 (284)
Q Consensus 172 g~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~---- 247 (284)
+|||+.+|.+..++.+++|+++.|.|+|+|+|++|+++|+..+.+.+...|..+++.+|.-.+|++....+....-
T Consensus 175 crlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~P~pp~~~~ewdg~lri~F~rkNktl~a~fk~~~v~~~ie 254 (315)
T KOG0820 175 CRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKNPRPPVDFHEWDGLLRICFLRKNKTLMAPFKSSSVLQKIE 254 (315)
T ss_pred CEEEHHHHHHHCCHHHEEECCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 00111137764114440105355579985564036852579979431678888999999997578634012457998733
Q ss_pred -------------------------HHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf -------------------------8999787774657120899999999999863
Q gi|254780398|r 248 -------------------------NLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 248 -------------------------~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
+++. .+...+.|++.++.+||++|...+..
T Consensus 255 ~n~~~~~s~~n~~~~~~~~~~~~~~~il~-~~~~~~~Ra~k~~~~DFlrLL~~f~~ 309 (315)
T KOG0820 255 KNYKKRESLDNIMIDLDFNLKPKIYNILF-AGLLADKRARKMTVDDFLRLLLAFNA 309 (315)
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 01651013544443444321277899987-21411025432879999998656553
No 9
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.40 E-value=1.5e-12 Score=98.36 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=98.1
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHH
Q ss_conf 99981898433658411239899999999719899987999758988234677502352--5998425543036887875
Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDIS 90 (284)
Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~ 90 (284)
.++..-..|++ -|-=-=.+..++++|+..++...+..|+|.|||+|.+|++||+++.+ .+++||.+++|+.+|.+.+
T Consensus 15 F~k~wi~~Prt-VGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 15 FFKGWIDNPRT-VGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred HHHHHHCCCCE-EEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC
T ss_conf 99998509731-11355785799999984348445976477769866768999965799543689982779999999758
Q ss_pred HHHHCCCCCCHHHHCCCC--HHHHCCCCCCEEE-----EECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHH
Q ss_conf 322001220000000143--1552133222011-----202322467889999985201000000110203344
Q gi|254780398|r 91 SQHPNRLEIIQDDALKVD--FEKFFNISSPIRI-----IANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157 (284)
Q Consensus 91 ~~~~~~~~ii~~Dal~~d--~~~~~~~~~~~~v-----vgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkE 157 (284)
.. +++|+|||...+ +.+.....-. .| +.|+|-.++-.|+..++..-. . .+.++.+|.-
T Consensus 94 p~----~~ii~gda~~l~~~l~e~~gq~~D-~viS~lPll~~P~~~~iaile~~~~rl~--~--gg~lvqftYg 158 (194)
T COG3963 94 PG----VNIINGDAFDLRTTLGEHKGQFFD-SVISGLPLLNFPMHRRIAILESLLYRLP--A--GGPLVQFTYG 158 (194)
T ss_pred CC----CCCCCCCHHHHHHHHHHCCCCEEE-EEEECCCCCCCCHHHHHHHHHHHHHHCC--C--CCEEEEEEEC
T ss_conf 87----513054056578778652797401-6886560024867789999999998568--9--9727999846
No 10
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.99 E-value=1.5e-09 Score=79.65 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf 39899999999719899987999758988234677502352-59984255430368878753220-01220000000143
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284)
+|+.. +-+.+.+....+..|||+|||.|.++..++++.+. +|+++|+|++.++.+++....+. .+++++++|.++.-
T Consensus 16 lD~Gt-~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~ 94 (170)
T pfam05175 16 LDIGS-RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAV 94 (170)
T ss_pred CCHHH-HHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 79899-99997089778994999776482989999997898679851544999999999999809984899974466657
Q ss_pred HHHHCCCCCCEEEEECCCHHHHHH----HHHHHHHH---HCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 155213322201120232246788----99999852---01000000110203344788753012312332345432013
Q gi|254780398|r 109 FEKFFNISSPIRIIANLPYNIGTR----LLFNWISA---DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 (284)
Q Consensus 109 ~~~~~~~~~~~~vvgNLPYnIss~----Il~~ll~~---~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~ 181 (284)
.+. .--.||+|.||+.... +..+++.. ...|.+ .+.+..++.. .| -+.+-.+|
T Consensus 95 ~~~-----~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG--~l~~V~n~~l-----------~y--~~~l~~~f 154 (170)
T pfam05175 95 EPG-----KFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGG--ELWIVANRHL-----------GY--PSLLEELF 154 (170)
T ss_pred CCC-----CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--EEEEEEECCC-----------CC--HHHHHHHH
T ss_conf 788-----6608998977211420328999999999999616497--9999998999-----------94--79999860
Q ss_pred CCEEEECC
Q ss_conf 32012000
Q gi|254780398|r 182 TKATMMFD 189 (284)
Q Consensus 182 ~~v~~~~~ 189 (284)
.+++.+..
T Consensus 155 ~~v~~~~~ 162 (170)
T pfam05175 155 GNVEVLAK 162 (170)
T ss_pred CCEEEEEE
T ss_conf 88899973
No 11
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.97 E-value=1.8e-09 Score=79.22 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=70.2
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH
Q ss_conf 65841123989999999971989998799975898823467750235259984255430368878753220-01220000
Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102 (284)
Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~ 102 (284)
..|| ++..+.+..++.+.+++.+++.|||||+|.|..|--|++. +.+|++||+|+.+++..++.+.... +++.+++|
T Consensus 56 ~~g~-~is~P~~~A~ml~~L~l~~~~~VLeIGtGsGY~tAlLa~l-~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~g 133 (213)
T PRK00312 56 GCGQ-TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHG 133 (213)
T ss_pred CCCC-EECHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 8998-9767999999999843689975999659860999999986-2928999428999999999999849987699968
Q ss_pred HHCC
Q ss_conf 0001
Q gi|254780398|r 103 DALK 106 (284)
Q Consensus 103 Dal~ 106 (284)
|...
T Consensus 134 dg~~ 137 (213)
T PRK00312 134 DGWK 137 (213)
T ss_pred CCCC
T ss_conf 8766
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.89 E-value=3.7e-09 Score=77.25 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=77.2
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH--HHCCCCCCH
Q ss_conf 5841123989999999971989998799975898823467750235-2599842554303688787532--200122000
Q gi|254780398|r 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQ 101 (284)
Q Consensus 25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~ 101 (284)
=|=+|=+|--++-..+... ....|||+|+|.|++...++++.. .++++||+++++++.+++.... ...++++++
T Consensus 25 ~~~~~~~DaiLL~~~~~~~---~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~ 101 (248)
T COG4123 25 CGFRYGTDAILLAAFAPVP---KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE 101 (248)
T ss_pred CCCCCCCHHHHHHHHCCCC---CCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEH
T ss_conf 8616640899997652656---6876988368946899997455877807999817999999999886186134016764
Q ss_pred HHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 000014315521332220112023224678
Q gi|254780398|r 102 DDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284)
Q Consensus 102 ~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284)
+|+..+.-.... ..--.||+|.||+=..
T Consensus 102 ~Di~~~~~~~~~--~~fD~Ii~NPPyf~~~ 129 (248)
T COG4123 102 ADIKEFLKALVF--ASFDLIICNPPYFKQG 129 (248)
T ss_pred HHHHHHHHCCCC--CCCCEEEECCCCCCCC
T ss_conf 308876542365--6547899598987875
No 13
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.88 E-value=4.6e-09 Score=76.66 Aligned_cols=105 Identities=16% Similarity=0.301 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHH----CCCC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEE
Q ss_conf 78884479999998----1898-4336584112398999999997198999879997589882346775023-5-25998
Q gi|254780398|r 3 MNNKSHSLKTILSH----YKII-PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIV 75 (284)
Q Consensus 3 ~~~~~~~i~~ll~~----~~~~-p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~a 75 (284)
...|.+.|+++..+ |..- --=++|||.. .-++.++.+++.+++.||++|||+|.+|..++++. + .+|++
T Consensus 6 ~~~k~~~V~~~Fd~iA~~YD~~N~~~S~G~~~~----Wr~~~v~~l~~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g 81 (239)
T PRK00216 6 LEEKQEKVAEVFDSIAPKYDLMNDLLSFGLHRV----WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGETGEVVG 81 (239)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 567999999999887878858766750751999----9999998627899998988457763879999997299767999
Q ss_pred ECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHH
Q ss_conf 425543036887875322--001220000000143155
Q gi|254780398|r 76 IEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 76 iEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~ 111 (284)
+++.+.+.+.++++.... ..+++++++||.++++++
T Consensus 82 ~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d 119 (239)
T PRK00216 82 LDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred EECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 91988999999999997389888507982355688876
No 14
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.81 E-value=1.6e-08 Score=73.30 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=69.3
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCC
Q ss_conf 6584112398999999997198999879997589882346775023--5259984255430368878753220-012200
Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100 (284)
Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii 100 (284)
..||. +..+.+..++.+.+++.+++.|||||+|.|..|--|++.. +.+|++||+++.+++..++.+.... ++++++
T Consensus 54 g~g~t-is~P~~~a~ml~~L~l~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~ 132 (214)
T PRK13942 54 GYGQT-ISAIHMVAIMCELLDLDEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVI 132 (214)
T ss_pred CCCCE-ECHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99978-87499999999972799999799967995299999999747678579997179999999999986376875898
Q ss_pred HHHHCCC
Q ss_conf 0000014
Q gi|254780398|r 101 QDDALKV 107 (284)
Q Consensus 101 ~~Dal~~ 107 (284)
+||...-
T Consensus 133 ~gdg~~G 139 (214)
T PRK13942 133 LGDGTKG 139 (214)
T ss_pred ECCCCCC
T ss_conf 5675667
No 15
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.80 E-value=1.6e-08 Score=73.38 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC---EEEEECCCCCCHHHHHHHHHHHH-CCCCCCH
Q ss_conf 8411239899999999719899987999758988234677502352---59984255430368878753220-0122000
Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101 (284)
Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~---~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~ 101 (284)
|| ++..+.+..+|.+.+++.+++.|||||+|.|.+|--|++. ++ .|+++|+|+.+++.+++.+.... .++.+++
T Consensus 53 ~~-tis~P~~~a~ml~~L~l~~g~~VLeIGtGsGY~tAlLa~l-~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~ 130 (205)
T pfam01135 53 GQ-TISAPHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARM-VGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVV 130 (205)
T ss_pred CC-EECHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98-8863899999999707899998999669965999999998-387876999835899999999999984888658984
Q ss_pred HHHCC
Q ss_conf 00001
Q gi|254780398|r 102 DDALK 106 (284)
Q Consensus 102 ~Dal~ 106 (284)
||...
T Consensus 131 gdg~~ 135 (205)
T pfam01135 131 GDGRQ 135 (205)
T ss_pred CCCCC
T ss_conf 56455
No 16
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.4e-08 Score=72.16 Aligned_cols=162 Identities=21% Similarity=0.250 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 843365841123989999999971---98999879997589882346775023525998425543036887875322001
Q gi|254780398|r 20 IPKKYMGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 (284)
Q Consensus 20 ~p~k~lGQnFL~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~ 96 (284)
.|+-.|-| |.++..++..|+..+ +..++..|++.|+|+|.|....+-.+|+.|+|||+|+..++.++++.....++
T Consensus 16 ~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 16 NPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred CCCCCCEE-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 99866333-47984899999999987388478888882788478899998629717999936989999999888860884
Q ss_pred CCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH-----HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHH
Q ss_conf 220000000143155213322201120232246-----788999998520100000011020334478875301231233
Q gi|254780398|r 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNI-----GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 (284)
Q Consensus 97 ~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI-----ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Y 171 (284)
+.++.+|+-+++-+- -.++=|.||.+ -.+++.+.++.... .-..+--=-++|-++.++.-|-
T Consensus 95 v~f~~~dv~~~~~~~-------dtvimNPPFG~~~rhaDr~Fl~~Ale~s~v---VYsiH~a~~~~f~~~~~~~~G~--- 161 (198)
T COG2263 95 VEFVVADVSDFRGKF-------DTVIMNPPFGSQRRHADRPFLLKALEISDV---VYSIHKAGSRDFVEKFAADLGG--- 161 (198)
T ss_pred EEEEECCHHHCCCCC-------CEEEECCCCCCCCCCCCHHHHHHHHHHHHE---EEEEECCCCHHHHHHHHHHCCC---
T ss_conf 699982101147766-------669978997322136888999999974014---7874016607999999885497---
Q ss_pred HHHHHHHCCCCCEEEECCCCCCEECCCCCCC
Q ss_conf 2345432013320120001100001057875
Q gi|254780398|r 172 GRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 (284)
Q Consensus 172 g~LSv~~q~~~~v~~~~~V~~~~F~P~PkVd 202 (284)
++... .+.-+.+|+..++-+=+|.
T Consensus 162 ---~v~~~----~~~~~~iP~~y~fH~k~~~ 185 (198)
T COG2263 162 ---TVTHI----ERARFPIPRTYPFHRKRVR 185 (198)
T ss_pred ---EEEEE----EEEEEECCCCCCHHHHEEE
T ss_conf ---08999----9999714765740141255
No 17
>PRK08317 hypothetical protein; Provisional
Probab=98.73 E-value=3.1e-08 Score=71.54 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf 99999999719899987999758988234677502-352-5998425543036887875322001220000000143155
Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284)
..-+++.+.+++.+|+.|||||||+|.+|..|+++ ++. +|+++++++.+++.+++.......+++++++|+..+++++
T Consensus 6 ~~r~~~l~~L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp~~d 85 (241)
T PRK08317 6 RYRARTFELLAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
T ss_conf 99999997369999799999664174999999997499978999969889999999998622896499955464358988
No 18
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.71 E-value=4.1e-08 Score=70.77 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=66.0
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHH--HCCCCCC
Q ss_conf 584112398999999997198999879997589882346775023--525998425543036887875322--0012200
Q gi|254780398|r 25 MGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQH--PNRLEII 100 (284)
Q Consensus 25 lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii 100 (284)
.|| ++..+.+..++.+.+++.+++.|||||+|.|..|--|++.. ..+|++||+|+.++...++.+... .|.++++
T Consensus 51 ~~~-tis~P~~~a~ml~~L~~~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~ 129 (205)
T PRK13944 51 AGA-TISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY 129 (205)
T ss_pred CCC-EECHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 998-9977999999999706899998999789851999999998374771799953699999999999985986330679
Q ss_pred HHHHCC
Q ss_conf 000001
Q gi|254780398|r 101 QDDALK 106 (284)
Q Consensus 101 ~~Dal~ 106 (284)
+||...
T Consensus 130 ~gdg~~ 135 (205)
T PRK13944 130 HGDGKR 135 (205)
T ss_pred ECCCCC
T ss_conf 765565
No 19
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.69 E-value=3.9e-08 Score=70.88 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCCCCCCCCHHHH----------HHHH-HHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 6584112398999----------9999-9719899987999758988234677502352-59984255430368878753
Q gi|254780398|r 24 YMGQNFLLDLNIL----------KKIA-ESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 24 ~lGQnFL~d~~i~----------~~iv-~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~ 91 (284)
=+|-.|-+|++++ ...+ ......+...|+|+|+|.|++...|+...+. +|+|+|+++..+..++++..
T Consensus 87 F~gl~f~V~~~VLIPR~~teeLv~~~l~~~~~~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~ 166 (284)
T TIGR03533 87 FAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE 166 (284)
T ss_pred ECCCEEEECCCCEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 73847886899543899719999999999842367771555216807999999987899879999899999999999998
Q ss_pred HH--HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 22--001220000000143155213322201120232246788
Q gi|254780398|r 92 QH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284)
Q Consensus 92 ~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284)
.+ .++++++++|.++--.. ..--.||+|.||=-+..
T Consensus 167 ~~~l~~rv~~~~~D~~~~~~~-----~~fDlIVSNPPYI~~~e 204 (284)
T TIGR03533 167 RHGLEDRVTLIQSDLFAALPG-----RKYDLIVSNPPYVDAED 204 (284)
T ss_pred HHCCCCCEEEEECCHHHHCCC-----CCCCEEEECCCCCCHHH
T ss_conf 608543368883514331457-----77787997799788465
No 20
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.4e-08 Score=70.57 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCCHHHH
Q ss_conf 8411239899999999719899987999758988234677502352599842554303688787532200-122000000
Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDA 104 (284)
Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~-~~~ii~~Da 104 (284)
+..++--+.+..++.+.+++.+++.|||||+|.|..|--|++. +.+|++||+++.+++.+++++....- ++++++||.
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred CCCEECCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH-HCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9935057479999999748999986888777830999999997-484999997199999999999976987349997885
Q ss_pred CC
Q ss_conf 01
Q gi|254780398|r 105 LK 106 (284)
Q Consensus 105 l~ 106 (284)
.+
T Consensus 130 ~~ 131 (209)
T COG2518 130 SK 131 (209)
T ss_pred CC
T ss_conf 56
No 21
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.68 E-value=5.2e-08 Score=70.14 Aligned_cols=104 Identities=13% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 3658411239899----------999999719899987999758988234677502352-59984255430368878753
Q gi|254780398|r 23 KYMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 23 k~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~ 91 (284)
-=+|..|.+|+++ ++.+.+.... .+..|||+|+|.|.+...|++..+. +++|+|+++..++.++++..
T Consensus 54 ~F~~~~f~V~~~VLIPRpETE~Lve~~l~~~~~-~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~ 132 (251)
T TIGR03534 54 EFYGLDFKVSPGVLIPRPDTEELVEAALERLKK-GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAK 132 (251)
T ss_pred EEEEEEEEEECCEEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 898689997188786488339999999997314-8986999556716999999996799789999898799999999999
Q ss_pred HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 220-01220000000143155213322201120232246788
Q gi|254780398|r 92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284)
Q Consensus 92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284)
.+. .+++++++|.+..-.. +.--.||+|.||==++.
T Consensus 133 ~~~~~~v~~~~~d~~~~~~~-----~~fDlIvsNPPYI~~~e 169 (251)
T TIGR03534 133 RLGLENVRFLKSDWFEPLPG-----GKFDLIVSNPPYIPEAD 169 (251)
T ss_pred HCCCCEEEEEECCHHHCCCC-----CCCCEEEECCCCCCHHH
T ss_conf 80998268651314321568-----98668997899887456
No 22
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=98.67 E-value=4.7e-08 Score=70.41 Aligned_cols=106 Identities=19% Similarity=0.293 Sum_probs=78.1
Q ss_pred CCCCCCCHHHHHHHHH----CCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CC-EE
Q ss_conf 9778884479999998----18984-336584112398999999997198999879997589882346775023-52-59
Q gi|254780398|r 1 MTMNNKSHSLKTILSH----YKIIP-KKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-AR-KV 73 (284)
Q Consensus 1 ~~~~~~~~~i~~ll~~----~~~~p-~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v 73 (284)
||+. |.+.|+++..+ |.+-- -=++|||.+ .-+++++.+++.+++.||++|+|+|.+|..+++.. +. +|
T Consensus 1 ~~~~-K~~~V~~mF~~Ia~~YD~~N~~~S~G~~~~----WR~~~v~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v 75 (233)
T pfam01209 1 MTVL-KEQRVGDVFSSVASKYDLMNDVISFGIHRL----WKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKV 75 (233)
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf 9510-899999999863658878887860734999----99999986189999989982540588999999984999749
Q ss_pred EEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHH
Q ss_conf 984255430368878753220-01220000000143155
Q gi|254780398|r 74 IVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEK 111 (284)
Q Consensus 74 ~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~ 111 (284)
+++++.+.+.+.++++..... .+++++.+||.++++++
T Consensus 76 ~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d 114 (233)
T pfam01209 76 VGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFED 114 (233)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 999699999999999998569998369982166688666
No 23
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=4.8e-08 Score=70.32 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf 123989999999971989998799975898823467750235--259984255430368878753220-01220000000
Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284)
Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284)
-+--+.+..+|.+.+++.+++.|||||+|.|--|--|++... ..|++||+|+.+++.+++.+.... .++.+++||..
T Consensus 57 TISqP~iVA~MlElL~l~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~ 136 (317)
T PRK13943 57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY 136 (317)
T ss_pred EECHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 74168999999997178999868996577438999999984878759999867999999999999779986499979988
Q ss_pred CCCHHHHCCCCCCE--EEEECCCHHHHHHHHHH
Q ss_conf 14315521332220--11202322467889999
Q gi|254780398|r 106 KVDFEKFFNISSPI--RIIANLPYNIGTRLLFN 136 (284)
Q Consensus 106 ~~d~~~~~~~~~~~--~vvgNLPYnIss~Il~~ 136 (284)
. -|++ ..|| .+|.--+-.|-.+++..
T Consensus 137 ~-G~pe----~APYD~IIVTAaa~~IP~aLldQ 164 (317)
T PRK13943 137 Y-GVPE----FSPYDVIFVTVGVDEVPETWFTQ 164 (317)
T ss_pred C-CCCC----CCCCCEEEEEECCCCCCHHHHHH
T ss_conf 8-8866----79977899985276489999996
No 24
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=4.7e-08 Score=70.42 Aligned_cols=103 Identities=12% Similarity=0.221 Sum_probs=73.6
Q ss_pred CCCCCCCCCCHHH----------HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 3658411239899----------999999719899987999758988234677502352-59984255430368878753
Q gi|254780398|r 23 KYMGQNFLLDLNI----------LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 23 k~lGQnFL~d~~i----------~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~ 91 (284)
-=+|..|.+|+++ ++.+++.... ....|||+|+|.|.+...|++..+. +++|+|+.+.....++++..
T Consensus 76 ~F~g~~f~V~~~VLIPRPETE~LVe~~l~~~~~-~~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~ 154 (277)
T PRK09328 76 EFWSLPLFVSPATLIPRPDTECLVEQALARLPE-QPCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQ 154 (277)
T ss_pred EEEEEEEEECCCEEEECCCHHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 565258987798364088179999999996453-7881899545569999999986779899996489999999999999
Q ss_pred HHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 220-0122000000014315521332220112023224678
Q gi|254780398|r 92 QHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284)
Q Consensus 92 ~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284)
.+. .+++++++|.++--.. ..--.||+|.||==+.
T Consensus 155 ~~~l~~v~~~~~d~~~~~~~-----~~fDlIVSNPPYI~~~ 190 (277)
T PRK09328 155 HLAIKNVRILQSDWFSALSG-----QQFAMIVSNPPYIDAQ 190 (277)
T ss_pred HCCCCEEEEEECCCHHHCCC-----CCCCEEEECCCCCCCC
T ss_conf 80988699994475211378-----7778899789987700
No 25
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.63 E-value=1.1e-07 Score=68.14 Aligned_cols=126 Identities=21% Similarity=0.215 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC
Q ss_conf 239899999999719899987999758988234677502352-59984255430368878753220-0122000000014
Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV 107 (284)
Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~ 107 (284)
++-+.+---....+.+.+++.+++||+|+|++|.+.+..+++ +++|||.|+..++..+++...+. .+++++.|||-+.
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 86799899889860889999899957886689999997398855999925888999999999984999679995464576
Q ss_pred CHHHHCCCCCCE-EEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHH-EEEHHHHHHHHH
Q ss_conf 315521332220-112023224678899999852010000001102-033447887530
Q gi|254780398|r 108 DFEKFFNISSPI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTL-LFQKEVGERITA 164 (284)
Q Consensus 108 d~~~~~~~~~~~-~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vl-mvQkEvA~Rl~a 164 (284)
.. +. ..|- .+||-= =+|.. |+..+..+.. ++. ++|. -++-|.+-++..
T Consensus 97 L~-~~---~~~daiFIGGg-~~i~~-ile~~~~~l~--~gg-rlV~naitlE~~~~a~~ 146 (187)
T COG2242 97 LP-DL---PSPDAIFIGGG-GNIEE-ILEAAWERLK--PGG-RLVANAITLETLAKALE 146 (187)
T ss_pred HC-CC---CCCCEEEECCC-CCHHH-HHHHHHHHCC--CCC-EEEEEEECHHHHHHHHH
T ss_conf 36-99---99999998798-77789-9999999718--687-69998600888999999
No 26
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.63 E-value=9.7e-08 Score=68.43 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC
Q ss_conf 239899999999719899987999758988234677502352-59984255430368878753220-0122000000014
Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV 107 (284)
Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~ 107 (284)
++-+.+-.-....+++.+++.|++||+|+|++|-+.+...+. +|+|||+|+..++..+++...+. .++++++|||.+.
T Consensus 23 mTK~EVRa~~l~kL~l~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~ 102 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 78899999999970899999999947887799999998789988999976888999999989972999879997263666
Q ss_pred CHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 31552133222011202322467889999985
Q gi|254780398|r 108 DFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 (284)
Q Consensus 108 d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~ 139 (284)
+.++.+. -...+||- ==++. .|+..+..
T Consensus 103 -L~~l~p~-pD~vFIGG-g~~l~-~il~~~~~ 130 (196)
T PRK07402 103 -LAQLAPA-PDRICIEG-GRPIK-EILQAVWQ 130 (196)
T ss_pred -HHHCCCC-CCEEEECC-CCCHH-HHHHHHHH
T ss_conf -8408999-99999848-96889-99999998
No 27
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.62 E-value=9.1e-08 Score=68.60 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=73.7
Q ss_pred CCCCCCCCCHHHH-------HHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 6584112398999-------999997----19899987999758988234677502352-59984255430368878753
Q gi|254780398|r 24 YMGQNFLLDLNIL-------KKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 24 ~lGQnFL~d~~i~-------~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~ 91 (284)
=+|-.|.+|++++ +-+++. ........|+++|+|.|.+...|+...+. +|+|+|+++...+.++++..
T Consensus 99 F~gl~f~V~~~VLIPRpp~~ELi~~~l~~~~~~~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~ 178 (307)
T PRK11805 99 FCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDEQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred ECCCEEEECCCEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 74856886798015899849999999999733578872777427827999999987899889998589999999999999
Q ss_pred HH--HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 22--001220000000143155213322201120232246788
Q gi|254780398|r 92 QH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTR 132 (284)
Q Consensus 92 ~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284)
.+ .++++++++|.+.--.. ..---||+|.||==+..
T Consensus 179 ~~~l~~rv~~~~~D~~~~l~~-----~~fDlIvSNPPYI~~~~ 216 (307)
T PRK11805 179 RHGLEDRVTLIQSDLFAALPG-----RRYDLIVSNPPYVDAED 216 (307)
T ss_pred HHCCCCCEEEEECCHHHCCCC-----CCCCEEEECCCCCCHHH
T ss_conf 838877389980402212688-----75077996799788565
No 28
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.59 E-value=2.9e-07 Score=65.45 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC
Q ss_conf 39899999999719899987999758988234677502352-599842554303688787532--200122000000014
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV 107 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~ 107 (284)
..++++.-++..++..+++.|++-.||.|++..+.+..+++ .++++|+|+.++...+.+... ..+.+++.++|+.++
T Consensus 12 L~~~lAa~l~~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l 91 (171)
T pfam01170 12 LKATLARAMVNLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADL 91 (171)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHC
T ss_conf 88999999999858999997886899878999999996135895367587999999999999828998469997666538
Q ss_pred CHHHHCCCCCCEEEEECCCHHHHH-------HHHHHHHHH--HCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 315521332220112023224678-------899999852--0100000011020334478875301
Q gi|254780398|r 108 DFEKFFNISSPIRIIANLPYNIGT-------RLLFNWISA--DTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 108 d~~~~~~~~~~~~vvgNLPYnIss-------~Il~~ll~~--~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
+.+. +..-.||.|.||.... ++...+... ..+ .+|...+++-.+++++.+-.+
T Consensus 92 ~~~~----~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~-~g~~~~i~~~~~~~~k~~~~~ 153 (171)
T pfam01170 92 PLLN----GSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVL-RGRLVFATPEKKDFEKAARER 153 (171)
T ss_pred CCCC----CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHCCH
T ss_conf 7987----8831899889820113654569999999999999868-997899996868999985500
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.53 E-value=2e-07 Score=66.48 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=65.4
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC
Q ss_conf 99999719899987999758988234677502--3525998425543036887875322001220000000143155213
Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 (284)
Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~ 114 (284)
...+..+...++..||++|||+|.+|..|.++ ++ +|++|+..+.|++.+++.. ++ +++..+|+.++.+.+-
T Consensus 21 ~DLl~~l~~~~~~~vlDlGCG~G~~t~~l~~r~p~a-~v~GiD~S~~Ml~~Ar~~~---~~-~~f~~~D~~~~~~~~~-- 93 (252)
T PRK01683 21 VELLARVPLENVEYVADLGCGPGNSTALLHQRWPAA-RITGIDSSPAMLAEARQAL---PD-CQFVEADIRNWQPEQA-- 93 (252)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHC---CC-CEEEECCHHCCCCCCC--
T ss_conf 999841888899989993774989999999977998-7999989899999999758---99-8387250420787678--
Q ss_pred CCCCEEEEECCCHHH
Q ss_conf 322201120232246
Q gi|254780398|r 115 ISSPIRIIANLPYNI 129 (284)
Q Consensus 115 ~~~~~~vvgNLPYnI 129 (284)
.-.|+||.=.+=
T Consensus 94 ---~D~ifSNaalhW 105 (252)
T PRK01683 94 ---LDLIYANASLQW 105 (252)
T ss_pred ---CCEEEEEEEHHH
T ss_conf ---788956100450
No 30
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.51 E-value=2.5e-07 Score=65.85 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHC
Q ss_conf 2398999999997198999879997589882346775023-5-259984255430368878753220--01220000000
Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDAL 105 (284)
Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal 105 (284)
++-+.+-.-....+.+.+++.|+|||+|+|++|.+.+... + .+|+|||+|+..++.++++...+. +++++++|||.
T Consensus 23 mTK~EVRa~~l~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf 66799999999970999989999917703299999999669787599996788899999999998099988599952548
Q ss_pred CC
Q ss_conf 14
Q gi|254780398|r 106 KV 107 (284)
Q Consensus 106 ~~ 107 (284)
+.
T Consensus 103 ~~ 104 (198)
T PRK00377 103 EV 104 (198)
T ss_pred HH
T ss_conf 87
No 31
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.46 E-value=5.5e-07 Score=63.74 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCC
Q ss_conf 239899999999719899987999758988234677502352-59984255430368878753220-012200000001
Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106 (284)
Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~ 106 (284)
++-+.+-.-....+.+.+++.|++||+|+|++|.+.+...+. +|+|||+|+..++..+++...+. +++++++|+|-.
T Consensus 13 mTK~EIRai~LskL~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~Ap~ 91 (186)
T PRK08287 13 MTKEEVRALSLSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEAPI 91 (186)
T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 7789999999997199999999995788778999999978998899993798999999998997299987999377811
No 32
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.46 E-value=2.1e-07 Score=66.36 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 84336584112398999999997198999879997589882346775023525998425543036887875322001220
Q gi|254780398|r 20 IPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 (284)
Q Consensus 20 ~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~i 99 (284)
++-.++-+|=.+-+.+++++++.+...+...|||||||+|.+|..|.++++ +++++++.+.|...+++.... ...
T Consensus 15 raA~~Yd~~A~~Q~~~a~~Ll~~l~~~~~~~vLDlGcGtG~~t~~l~~~~~-~v~~~Dls~~Ml~~a~~~~~~----~~~ 89 (251)
T PRK10258 15 RAAAHYEQHADLQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA----DHY 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCC----HHH
T ss_conf 998658773699999999999736657899399983100278999997499-699995989999999874863----343
Q ss_pred CHHHHCCCCHHHHCCCCCCEEEEECCCHHHH
Q ss_conf 0000001431552133222011202322467
Q gi|254780398|r 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 (284)
Q Consensus 100 i~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs 130 (284)
+.+|+-..++++- +--.|++|+=.+=.
T Consensus 90 ~~~D~e~Lp~~~~----sfDli~S~~~lqW~ 116 (251)
T PRK10258 90 LAGDIESLPLATA----TFDLAWSNLAVQWC 116 (251)
T ss_pred HHCHHHHCCCCCC----CCCEEEECCCHHHC
T ss_conf 5360630999878----82178550404525
No 33
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.45 E-value=5.5e-07 Score=63.77 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCCCCCCCCCC--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 33658411239--8999999997198999879997589882346775023525998425543036887875322001220
Q gi|254780398|r 22 KKYMGQNFLLD--LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEI 99 (284)
Q Consensus 22 ~k~lGQnFL~d--~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~i 99 (284)
.+-||..|+-- ...++++++-+++.++..||+||||.|.-+..|+++..-+|++|++-+.+++.+++.... .+++++
T Consensus 25 e~i~GeGf~SpGG~e~~~~~l~~l~L~~~~kVLDvGCG~GG~a~~LA~~yg~~V~GiDls~~~~~~A~er~~~-~~~v~f 103 (263)
T PTZ00098 25 EFIFGEDYISSGGIEATKKILSDIELDANSKVLDIGSGLGGGCKYINEKYGAHTHGIDICEKIVNIAKERNQD-KAKIEF 103 (263)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC-CCCEEE
T ss_conf 9985689889995689999985048899986888688878899999997498799985889999999985512-585489
Q ss_pred CHHHHCCCCHHHH
Q ss_conf 0000001431552
Q gi|254780398|r 100 IQDDALKVDFEKF 112 (284)
Q Consensus 100 i~~Dal~~d~~~~ 112 (284)
..+|+++.++++-
T Consensus 104 ~~~d~~~~~f~d~ 116 (263)
T PTZ00098 104 EAKDILKKDFPEN 116 (263)
T ss_pred EECCCCCCCCCCC
T ss_conf 9678536778867
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.44 E-value=4.5e-07 Score=64.32 Aligned_cols=103 Identities=15% Similarity=0.314 Sum_probs=75.7
Q ss_pred CCHHHHHHH----HHCCCC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCC
Q ss_conf 844799999----981898-43365841123989999999971989998799975898823467750235-259984255
Q gi|254780398|r 6 KSHSLKTIL----SHYKII-PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKD 79 (284)
Q Consensus 6 ~~~~i~~ll----~~~~~~-p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD 79 (284)
+...+.... +.|... .-=|+|||.. .-+..++.+...+++.|||||+|+|.+|..+++... .+|+++++.
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~----Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s 84 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRL----WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS 84 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHH----HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECC
T ss_conf 488899998765778875421203740399----9999998607899987999668731999999996588449999799
Q ss_pred CCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHH
Q ss_conf 430368878753220-012200000001431552
Q gi|254780398|r 80 QQFFPILKDISSQHP-NRLEIIQDDALKVDFEKF 112 (284)
Q Consensus 80 ~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~ 112 (284)
+.+.+..+++..... .++++++|||..+++++.
T Consensus 85 ~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 85 ESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCC
T ss_conf 9999999987432476632799705654988887
No 35
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=98.43 E-value=7.1e-07 Score=63.06 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=58.9
Q ss_pred HHHHHHCCCCCCC-EEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHH-H-CCCCCCHHHHC
Q ss_conf 9999971989998-7999758988234677502352--5998425543036887875322-0-01220000000
Q gi|254780398|r 37 KKIAESSGSLDGI-TVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH-P-NRLEIIQDDAL 105 (284)
Q Consensus 37 ~~iv~~~~~~~~~-~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~-~-~~~~ii~~Dal 105 (284)
.-+...+.+.+++ .+++||+|+|++|-+++...++ +|+|||+++..+..++++...+ . +++.++.+||-
T Consensus 9 ~l~L~~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap 82 (135)
T TIGR02469 9 ALTLAKLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAP 82 (135)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99998717899994688960574838999997359860799985376898799999998289996325635568
No 36
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=8e-07 Score=62.74 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=63.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH-CCC-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC
Q ss_conf 89999999971989998799975898823467750-235-25998425543036887875322--001220000000143
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLT-LGA-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD 108 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~-~~~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d 108 (284)
+.=+-.|+..+++.+++.|+|.|.|.|+||.+|+. .++ .+|+.+|+++++++.++++++.+ .+++++..+|+.+.-
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 77799999870999887899815680599999999648884599999527899999999998424561378705400024
Q ss_pred HHH
Q ss_conf 155
Q gi|254780398|r 109 FEK 111 (284)
Q Consensus 109 ~~~ 111 (284)
.++
T Consensus 160 ~~~ 162 (256)
T COG2519 160 DEE 162 (256)
T ss_pred CCC
T ss_conf 655
No 37
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.40 E-value=4.1e-07 Score=64.52 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=74.0
Q ss_pred CCCCCCCCCCHHHH----------HHHHHHCCCCC-CCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHH
Q ss_conf 36584112398999----------99999719899-987999758988234677502352-5998425543036887875
Q gi|254780398|r 23 KYMGQNFLLDLNIL----------KKIAESSGSLD-GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS 90 (284)
Q Consensus 23 k~lGQnFL~d~~i~----------~~iv~~~~~~~-~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~ 90 (284)
-=+|..|.+|++++ +.+.+.+...+ ...++|+|+|.|++...|+...+. +++|+|+.+..+..++++.
T Consensus 74 ~F~g~~f~V~~~VLIPRpETE~LVe~~l~~~~~~~~~~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na 153 (285)
T PRK09329 74 HFLGLELQVDPRVLIPRQETEILVEKIIGYLQSHKEIQTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNA 153 (285)
T ss_pred EECCCEEEECCCCEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHH
T ss_conf 54495788689842059609999999999986187777788845417999999998589865880337699999999999
Q ss_pred HHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHH
Q ss_conf 3220012200000001431552133222011202322467889
Q gi|254780398|r 91 SQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 (284)
Q Consensus 91 ~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~I 133 (284)
..+.-+++++++|.++- +. ... --||+|.||==++.+
T Consensus 154 ~~~~~~v~~~~~dl~~~-~~----~~~-DlIvSNPPYI~~~e~ 190 (285)
T PRK09329 154 KSNGLDVDFLLGDLFAP-FS----RPA-DAFVCNPPYLSFKEF 190 (285)
T ss_pred HHCCCCEEEEECCHHHH-HC----CCC-CEEEECCCCCCHHHH
T ss_conf 97299479997630033-34----767-889989998884445
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=98.40 E-value=1.2e-07 Score=67.82 Aligned_cols=103 Identities=22% Similarity=0.362 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH---
Q ss_conf 4336584112398999999997198-----99987999758988234677502352-59984255430368878753---
Q gi|254780398|r 21 PKKYMGQNFLLDLNILKKIAESSGS-----LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--- 91 (284)
Q Consensus 21 p~k~lGQnFL~d~~i~~~iv~~~~~-----~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~--- 91 (284)
+.+.+=||=.+=+.++.++++.+.- .....|||+|||+|.+|+.|.+..+. +++|+++-..+...+++..+
T Consensus 5 A~~~Yd~~A~~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GW 84 (272)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGW 84 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCC
T ss_conf 15205666799999999999988740765445543565126854899999986880012333325678999997446788
Q ss_pred -HHH-CCCCCCHHHHCCCCHHHH---CCCCCCEEEEECCCHH
Q ss_conf -220-012200000001431552---1332220112023224
Q gi|254780398|r 92 -QHP-NRLEIIQDDALKVDFEKF---FNISSPIRIIANLPYN 128 (284)
Q Consensus 92 -~~~-~~~~ii~~Dal~~d~~~~---~~~~~~~~vvgNLPYn 128 (284)
... .+++.+.||+-+.++.+- ++ -||+|+=.+
T Consensus 85 W~~~~~~~~f~~gD~E~l~~~~~~~~~D-----LI~Sn~a~Q 121 (272)
T TIGR02072 85 WQKNLKAVQFICGDIEKLPLEDSSFKFD-----LIVSNLALQ 121 (272)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEE-----HHHHHHHHH
T ss_conf 6576045666663777178876630341-----275635887
No 39
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.4e-06 Score=61.19 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=66.9
Q ss_pred CCCCCCCCHHH------HHHHHHH--CCCCCCC-EEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 58411239899------9999997--1989998-7999758988234677502352-59984255430368878753220
Q gi|254780398|r 25 MGQNFLLDLNI------LKKIAES--SGSLDGI-TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94 (284)
Q Consensus 25 lGQnFL~d~~i------~~~iv~~--~~~~~~~-~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~ 94 (284)
+|=.|-+++.+ .+.+++. ......+ .|+|+|+|.|++...++...+. .|+|+++++..+..++++...+.
T Consensus 79 ~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~ 158 (280)
T COG2890 79 GGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG 158 (280)
T ss_pred ECCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 16345347986688976799999999751115891899658831999999961898879999899999999999999828
Q ss_pred -CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf -0122000000014315521332220112023224678
Q gi|254780398|r 95 -NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284)
Q Consensus 95 -~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284)
.++.++.+|...---. .--.+|+|-||==++
T Consensus 159 l~~~~~~~~dlf~~~~~------~fDlIVsNPPYip~~ 190 (280)
T COG2890 159 LVRVLVVQSDLFEPLRG------KFDLIVSNPPYIPAE 190 (280)
T ss_pred CCCEEEEECCHHHCCCC------CCCEEEECCCCCCCC
T ss_conf 97479874003334688------857799689988885
No 40
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.35 E-value=1.4e-06 Score=61.16 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=87.2
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCC
Q ss_conf 99719899987999758988234677502352-59984255430368878753220012200000001431552133222
Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSP 118 (284)
Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~ 118 (284)
.++++......||++|||.|.|+..++++.+. +|+++|+|...++-.++.+..+.-.-+++..|.+.- .+.-+
T Consensus 189 L~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~~-v~~~f----- 262 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFSE-IKGRF----- 262 (342)
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCC-----
T ss_conf 973783248847860678179999999869997699996889999999998998098868997564456-55678-----
Q ss_pred EEEEECCCHH----HHHHHHHHHHHHH--CCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 0112023224----6788999998520--100000011020334478875301231233234543201332012000110
Q gi|254780398|r 119 IRIIANLPYN----IGTRLLFNWISAD--TWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP 192 (284)
Q Consensus 119 ~~vvgNLPYn----Iss~Il~~ll~~~--~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~ 192 (284)
-.||+|.||+ +...+..+++... ...++. -..|| |.|-. .|- .++-++|.+++.+-. -
T Consensus 263 D~IvsNPPFH~G~~~~~~i~~~fi~~A~~~L~~gG--~L~iV----ANr~L------pY~--~~L~~~Fg~~~~la~--~ 326 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGG--ELRIV----ANAFL------PYP--DLLDETFGSHEVLAQ--T 326 (342)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEE----ECCCC------CCH--HHHHHHCCCEEEEEC--C
T ss_conf 98996885215752658999999999998612498--89999----81898------968--999986298299802--8
Q ss_pred CEECCCCCCCEEEEE
Q ss_conf 000105787578873
Q gi|254780398|r 193 HVFFPSPKVTSTVIH 207 (284)
Q Consensus 193 ~~F~P~PkVdS~vi~ 207 (284)
+-| ||.+|+..
T Consensus 327 ~kF----kVy~A~~~ 337 (342)
T PRK09489 327 GRF----KVYRAIMT 337 (342)
T ss_pred CCE----EEEEEECC
T ss_conf 997----99998578
No 41
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=98.33 E-value=1.5e-06 Score=60.99 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf 239899999999719899987999758988234677502352599842554303688787532200122000000014
Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284)
Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284)
-.++-=+..|.+.++...|..|||||||.|.||+.|++.++ +|++|+..+..++.++.......-+++..++|+-++
T Consensus 31 ~~N~~R~~~i~~~~~~l~G~~ILDVGCGgG~lse~LAr~Ga-~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l 107 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-TVTGIDASEENIEVARLHALESGLKIDYRQITAEEL 107 (233)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHH
T ss_conf 83699999999751466899899975589711289996799-799987998999999998564434511675147665
No 42
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.32 E-value=7e-07 Score=63.09 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCC
Q ss_conf 398999999997198999879997589882346775023-5-25998425543036887875322--0012200000001
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK 106 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~ 106 (284)
+=+.=+..|+-.+++.+|+.|+|-|.|.|+||.+|+..- + .+|+.+|+.+.+++.+++.+..+ .+++++.+.|+.+
T Consensus 86 iYpkD~s~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~ 165 (309)
T pfam08704 86 LYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCK 165 (309)
T ss_pred ECCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHC
T ss_conf 55600999999809899999998367842999999997488865999844789999999999874987505889852001
Q ss_pred CCH
Q ss_conf 431
Q gi|254780398|r 107 VDF 109 (284)
Q Consensus 107 ~d~ 109 (284)
--+
T Consensus 166 ~gf 168 (309)
T pfam08704 166 SGF 168 (309)
T ss_pred CCC
T ss_conf 366
No 43
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=98.30 E-value=2.1e-06 Score=60.16 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=61.6
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC
Q ss_conf 99999999719899987999758988234677502-352599842554303688787532--200122000000014
Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV 107 (284)
Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~ 107 (284)
+-++.+++.+++.+|+.|||||||.|+++..+++. ++ +|++|-+.+.-.++.++.... .++++++..+|..++
T Consensus 49 ~Kl~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~g~-~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~ 124 (273)
T pfam02353 49 AKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDV-NVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF 124 (273)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC
T ss_conf 99999998658899998999788808999999984795-18999797899999999998708743212000626547
No 44
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.27 E-value=1.3e-06 Score=61.51 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=58.2
Q ss_pred EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH-HHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH
Q ss_conf 7999758988234677502352599842554303688787532-200122000000014315521332220112023224
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ-HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~-~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn 128 (284)
.|||+|+|+|..|..+++....+++++|+++.+++.+++.... ...+++++++|+.+..... .+.--.|++|.+++
T Consensus 1 rVLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~fD~V~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEA---DESFDVIISDPPLH 77 (107)
T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHH---CCCEEEEEEECCEE
T ss_conf 999998887999999995689889999898889999999875327886467148867886320---57531999917501
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=98.27 E-value=1.8e-06 Score=60.49 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=63.3
Q ss_pred HHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--CC-CCCCHHHHCCCC
Q ss_conf 9999999719---89998799975898823467750235259984255430368878753220--01-220000000143
Q gi|254780398|r 35 ILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NR-LEIIQDDALKVD 108 (284)
Q Consensus 35 i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~~-~~ii~~Dal~~d 108 (284)
+.+++...+. ...|..||+-|||+|.||..|+++|| +|.|++|-+.|+..+++..+... +| +++.-+|.+..+
T Consensus 39 ~~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~GA-~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~ 117 (224)
T TIGR02021 39 MREKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLE 117 (224)
T ss_pred HHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHC
T ss_conf 999999854678898767777558893154498884798-6866237689999998621002101670035453044413
Q ss_pred HHHH
Q ss_conf 1552
Q gi|254780398|r 109 FEKF 112 (284)
Q Consensus 109 ~~~~ 112 (284)
..++
T Consensus 118 ~G~f 121 (224)
T TIGR02021 118 LGKF 121 (224)
T ss_pred CCCC
T ss_conf 8985
No 46
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.27 E-value=2.5e-06 Score=59.62 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=55.4
Q ss_pred HHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHH
Q ss_conf 9999999719---8999879997589882346775023525998425543036887875322--0012200000
Q gi|254780398|r 35 ILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDD 103 (284)
Q Consensus 35 i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~D 103 (284)
..+.+.+.+. ..+|..||++|||+|.++..|+++++ +|+++++.+.+++.+++..... .+++++..+|
T Consensus 48 mr~~~l~wl~~~~dl~G~rVLDaGCGtG~la~~LA~~Ga-~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gD 120 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLSILDAGCGTGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLDGNITFEVGD 120 (230)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 999999973105997899898818786787999997799-8999838999999999755862787675389667
No 47
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.25 E-value=1.7e-05 Score=54.44 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=116.9
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--------CCCEEEEECCCCCCH
Q ss_conf 999981898433658411239899999999719899987999758988234677502--------352599842554303
Q gi|254780398|r 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--------GARKVIVIEKDQQFF 83 (284)
Q Consensus 12 ~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--------~~~~v~aiEiD~~~~ 83 (284)
.+|+++.-...++.||.| +-+.|++-||+.+++.+++.|++--||+|.+-.+..+. ....+...|+|+..+
T Consensus 12 ~ll~~~a~~~g~~~Geff-TPr~Vv~lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~ 90 (312)
T pfam02384 12 YLLGKFANEEGKSGGEFY-TPREVSKLIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTY 90 (312)
T ss_pred HHHHHHHHHHCCCCCEEC-CCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHH
T ss_conf 999999987387586358-8789999999982899999882168773378999999999843785565563688998999
Q ss_pred HHHHHHHHHH---HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH-------------------------HHHH
Q ss_conf 6887875322---00122000000014315521332220112023224678-------------------------8999
Q gi|254780398|r 84 PILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-------------------------RLLF 135 (284)
Q Consensus 84 ~~l~~~~~~~---~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss-------------------------~Il~ 135 (284)
..++-.+--+ .+.+.+.++|.|.-+.... ...--.|++|.||+... .++.
T Consensus 91 ~la~mNm~lhgi~~~~~~i~~gdsl~~~~~~~--~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiq 168 (312)
T pfam02384 91 RLARMNMILHGIEYNDFGIRHGDTLLSPKFEE--DKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQ 168 (312)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHH
T ss_conf 99999999847988745521477655767665--4551189837864667665432102721103687888744299999
Q ss_pred HHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHH-HHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 9985201000000110203344788753012312332-345432013320120001100001057875788730125
Q gi|254780398|r 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG-RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 (284)
Q Consensus 136 ~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg-~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk 211 (284)
+.+... . +..+.+++|-+ -+ +...+ .+.. |=-++ -.+.++-+...|.+-|+| -.|.++++-|.+.
T Consensus 169 h~l~~L-k-~~GraaiVlp~-g~----Lf~~~-~e~~iR~~ll--e~~~l~aVI~LP~~lF~~-tgi~t~ilv~~k~ 234 (312)
T pfam02384 169 HIIYHL-S-PNGRAAVVLPN-GV----LFRGG-AEGDIRKALV--EKDLIEAVIALPPNLFYN-TGIPTCILFLTKN 234 (312)
T ss_pred HHHHHC-C-CCCEEEEEECC-CC----CCCCC-HHHHHHHHHH--HCCCEEEEEECCCCCCCC-CCCCEEEEEEECC
T ss_conf 999856-9-99769999558-23----10465-0889999999--759769999589775338-9984799999889
No 48
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.24 E-value=1.4e-06 Score=61.18 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCCCCCCCCCHHHH------HHHHHH----CC---------------------CCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 36584112398999------999997----19---------------------899987999758988234677502352
Q gi|254780398|r 23 KYMGQNFLLDLNIL------KKIAES----SG---------------------SLDGITVIEIGAGPGNLTQMLLTLGAR 71 (284)
Q Consensus 23 k~lGQnFL~d~~i~------~~iv~~----~~---------------------~~~~~~VlEIGpG~G~LT~~Ll~~~~~ 71 (284)
-=||-.|.+|++++ +-+|+. +. ..+.-.|||+|+|.|.+...|+...+.
T Consensus 80 eF~g~~F~Vn~~VLIPRPeTE~LVE~vL~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~ILDLGTGSGcIaISLa~e~p~ 159 (503)
T PRK01544 80 EFYSREFIVNKHVLIPRSDTEVLVDVVFQHSQCHSRESGNPEKKQLDSVSKNRNDKFLNILELGTGSGCIAISLLCELPN 159 (503)
T ss_pred EECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 32584678489833589963999999999864202223453100110000123455772788466679999999986789
Q ss_pred -EEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHH
Q ss_conf -5998425543036887875322--0012200000001431552133222011202322467889
Q gi|254780398|r 72 -KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 (284)
Q Consensus 72 -~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~I 133 (284)
+++|+++.+...+.++++...+ .++++++++|-.+- + ....--.+|+|.||=-++.+
T Consensus 160 a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~----l-~~~kFDlIVSNPPYI~~~e~ 219 (503)
T PRK01544 160 ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----I-GKQKFDFIVSNPPYISHSEK 219 (503)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHC----C-CCCCCCEEEECCCCCCHHHH
T ss_conf 989999898999999999999808820179996553101----5-88872479838998875666
No 49
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=98.17 E-value=2.4e-06 Score=59.79 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=58.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCE-EEEE
Q ss_conf 899987999758988234677502352599842554303688787532200122000000014315521332220-1120
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPI-RIIA 123 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~-~vvg 123 (284)
..++|.|||||.|+|.+...+.++|.+.|+++++.|..+..++++..-+.-++.++.+|..+- .. +.++ -|.=
T Consensus 19 ~k~ddeVlEiG~GtGlvair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~Dlf~~-----v~-geKFdviLF 92 (183)
T TIGR00537 19 LKPDDEVLEIGAGTGLVAIRLKEKGKKKILTTDINPFAVKLLRENAKLNNVELDVLETDLFEG-----VR-GEKFDVILF 92 (183)
T ss_pred HCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCCCCEEEEECCCCCC-----CC-CCCEEEEEE
T ss_conf 169952899716804899998515882078863687999987731000266404761113578-----55-551027730
Q ss_pred CCCHH
Q ss_conf 23224
Q gi|254780398|r 124 NLPYN 128 (284)
Q Consensus 124 NLPYn 128 (284)
|-||=
T Consensus 93 NpPYl 97 (183)
T TIGR00537 93 NPPYL 97 (183)
T ss_pred CCCCC
T ss_conf 78988
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.12 E-value=1.2e-05 Score=55.43 Aligned_cols=85 Identities=27% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCCCCCEEEE
Q ss_conf 8999879997589882346775023525998425543036887875322--00122000000014315521332220112
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNISSPIRII 122 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~~~~~~vv 122 (284)
..+++.||++|+|.|.|..+.++.+|++|.|+++|+..++..+++...+ .+++++..++....+ ..---|+
T Consensus 160 ~~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~~~~~-------~~~Dlvv 232 (298)
T PRK00517 160 VLPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPEDQPLE-------GKADVIV 232 (298)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-------CCCCEEE
T ss_conf 546886887157706999999974998499998989999999999998699842689616643446-------7646899
Q ss_pred ECCCHHHHHHHHHH
Q ss_conf 02322467889999
Q gi|254780398|r 123 ANLPYNIGTRLLFN 136 (284)
Q Consensus 123 gNLPYnIss~Il~~ 136 (284)
+|+=.++--.+.-.
T Consensus 233 ANIla~vl~~l~~~ 246 (298)
T PRK00517 233 ANILANPLIELAPD 246 (298)
T ss_pred EECCHHHHHHHHHH
T ss_conf 73158999999999
No 51
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.11 E-value=3.4e-06 Score=58.81 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=55.9
Q ss_pred CEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCC
Q ss_conf 87999758988234677502352-599842554303688787532--2001220000000143155213
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFN 114 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~ 114 (284)
..||+||||.|..+..|+++.+. +|+++++.+.+++..++.... ..+++++.++|+.+.++++.++
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d~FD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYD 69 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCC
T ss_conf 908998366888899999977998899997999999999999997299865147852110399999835
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.10 E-value=7.1e-06 Score=56.83 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=56.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 99999999719899987999758988234677502-3525998425543036887875322001220000000
Q gi|254780398|r 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284)
Q Consensus 34 ~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284)
+-++.|++.+++.+++.|||||||.|.+...++++ ++ +|+++-+.+.-..++++...+.+ +++...|--
T Consensus 154 ~Kl~~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~g~-~VtgiTlS~eQ~~~a~~r~~gl~--v~v~l~DYR 223 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLP--VEIRLQDYR 223 (383)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCCCC--CEEEECCHH
T ss_conf 99999998648999997988578749999999997497-59998588999999999973898--789971524
No 53
>KOG2904 consensus
Probab=97.99 E-value=2.2e-05 Score=53.82 Aligned_cols=98 Identities=16% Similarity=0.307 Sum_probs=62.1
Q ss_pred HHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCC
Q ss_conf 99999999719---899987999758988234677502352-5998425543036887875322--00122000000014
Q gi|254780398|r 34 NILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKV 107 (284)
Q Consensus 34 ~i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~ 107 (284)
-..+.+++.++ -..++.++|+|+|.|+++..++..-+. .++|||.-+..+..+.++.... .|++.++|-+ ++.
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~-me~ 210 (328)
T KOG2904 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNI-MES 210 (328)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECC-CCC
T ss_conf 9999999997556532666688705783188999983478734899853288999999889987415846898412-220
Q ss_pred CHH-HHCCCCCCE-EEEECCCHHHHHH
Q ss_conf 315-521332220-1120232246788
Q gi|254780398|r 108 DFE-KFFNISSPI-RIIANLPYNIGTR 132 (284)
Q Consensus 108 d~~-~~~~~~~~~-~vvgNLPYnIss~ 132 (284)
|+- +.....+++ -+|+|-||=-+-+
T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904 211 DASDEHPLLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 125655454575248853899655551
No 54
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=97.99 E-value=2.4e-05 Score=53.56 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=97.6
Q ss_pred CCC-CCHHHHHHH----HHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCH
Q ss_conf 112-398999999----9971989998799975898823467750235259984255430368878753220-0122000
Q gi|254780398|r 28 NFL-LDLNILKKI----AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQ 101 (284)
Q Consensus 28 nFL-~d~~i~~~i----v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~ 101 (284)
-|. +|...++.+ ++.+++.+++.|+|.=+|.|.+|..|++. +++|++||.++..++.+++....+. .+++.++
T Consensus 270 sFfQvN~~~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~-~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~ 348 (440)
T PRK13168 270 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVPAMVERARENARRNGLDNVTFYH 348 (440)
T ss_pred CEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 8786599999999999999852678988998623856211113530-676887605799999999999974999878997
Q ss_pred HHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 00001431552133222011202322467889999985201000000110203344788753012312332345432013
Q gi|254780398|r 102 DDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 (284)
Q Consensus 102 ~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~ 181 (284)
+|+-+.-..........-.||-+-|=.=+...+..++... | +++ +++ ...|.|=..- |..+...-
T Consensus 349 ~d~~~~l~~~~~~~~~~D~vi~DPPR~G~~~~i~~l~~~~--p---~~I-vYV--------SCnPaTlARD-l~~L~~~G 413 (440)
T PRK13168 349 ANLFEDFTDQPWAKGGFDKVLLDPPRAGAFEVMQALAKLK--P---KRI-VYV--------SCNPATLARD-AGVLVEAG 413 (440)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC--C---CEE-EEE--------CCCHHHHHHH-HHHHHHCC
T ss_conf 4645663557863799998999988527899999998479--8---979-999--------3898999999-99998789
Q ss_pred CCEEEECCCCCCEECCCC-CCCEEEE
Q ss_conf 320120001100001057-8757887
Q gi|254780398|r 182 TKATMMFDISPHVFFPSP-KVTSTVI 206 (284)
Q Consensus 182 ~~v~~~~~V~~~~F~P~P-kVdS~vi 206 (284)
|.+ ..|-+-.+||.. .|.+..+
T Consensus 414 Y~l---~~i~~vDmFP~T~HvE~val 436 (440)
T PRK13168 414 YRL---KRAGVLDMFPHTGHVESMAL 436 (440)
T ss_pred CEE---EEEEEEECCCCCCEEEEEEE
T ss_conf 489---59999606999983899999
No 55
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=97.97 E-value=1.1e-05 Score=55.76 Aligned_cols=112 Identities=21% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCC--CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC--CCCCEEE
Q ss_conf 999--879997589882346775023525998425543036887875322001220000000143155213--3222011
Q gi|254780398|r 46 LDG--ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN--ISSPIRI 121 (284)
Q Consensus 46 ~~~--~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~--~~~~~~v 121 (284)
.++ +.|+++|||-|.|+.+++..+|..++|+++|+-.++-.+.++.. |++.-...+.+..-.++..+ ...---|
T Consensus 193 ~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~l--N~v~~~~~~~~~~~vPe~~~~~e~~~DVi 270 (330)
T TIGR00406 193 LKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL--NQVSDRLQVKLENSVPELEQPIEGKADVI 270 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHH--CCCCHHHHHHHCCCCCCCCCCCCCCCCEE
T ss_conf 7776654787126717899999975123112213772899999976874--58864576432057875345322566757
Q ss_pred EECCCHHHHHHH------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHH
Q ss_conf 202322467889------9999852010000001102033447887530
Q gi|254780398|r 122 IANLPYNIGTRL------LFNWISADTWPPFWESLTLLFQKEVGERITA 164 (284)
Q Consensus 122 vgNLPYnIss~I------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a 164 (284)
|+|| ++-.| +.+|+... +..+-..++--|++...-.+.
T Consensus 271 VANi---LA~vi~~L~p~~~~L~~~~--G~lilSGIl~~~~~sV~~ay~ 314 (330)
T TIGR00406 271 VANI---LAEVIKELYPQFSRLVKPG--GHLILSGILETQAQSVCEAYE 314 (330)
T ss_pred EECC---HHHHHHHHHHHHHHHCCCC--CCEEEHHHHHHHHHHHHHHHH
T ss_conf 8800---2457876413551310689--965741347647999999985
No 56
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.97 E-value=4e-06 Score=58.38 Aligned_cols=62 Identities=31% Similarity=0.400 Sum_probs=52.5
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH--HHHHCCCCCCHHHHCCCCHHH
Q ss_conf 9879997589882346775023525998425543036887875--322001220000000143155
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~--~~~~~~~~ii~~Dal~~d~~~ 111 (284)
.|.+.+.|+|.|.|+-.-+.. |++|+|||.|+.-+..++++. +++ +++++++|||+.+|++.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~fe~ 96 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDFEN 96 (252)
T ss_pred HHCEEECCCCCCHHHHHHHHH-HCEEEEEECCCHHHHHHHHCCCCCCC-CCEEEEECCCCCCCCCC
T ss_conf 410563468863288988753-20278874180787776505777887-64689805532133234
No 57
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.96 E-value=1.4e-05 Score=55.02 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=92.3
Q ss_pred CCCC-CCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHCCCCE---EEEECCCCCCHHHHHHHHHH-----H
Q ss_conf 5841-1239899999999719--8999879997589882346775023525---99842554303688787532-----2
Q gi|254780398|r 25 MGQN-FLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARK---VIVIEKDQQFFPILKDISSQ-----H 93 (284)
Q Consensus 25 lGQn-FL~d~~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~~~~~~---v~aiEiD~~~~~~l~~~~~~-----~ 93 (284)
.||+ ++-.+-...++.+.++ +.+++.|||||+|.|-.|--++..- .+ |+.||.=+.|+...++.+.. +
T Consensus 57 ig~~qtiS~p~mvA~m~~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v-~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL 135 (228)
T TIGR00080 57 IGYGQTISAPHMVAKMTEYLENHLKPGAKVLEIGTGSGYQAAVLAEIV-GRDGLVVSIERIPELVEKARRRLKKHHSEQL 135 (228)
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 256762440789999999888521403556650478558999999987-1397189985357889999987654314440
Q ss_pred H-CCCCCCHHHHCCCCHHHHCCCCCCE--EEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHH
Q ss_conf 0-0122000000014315521332220--112023224678899999852010000001102033447887530123123
Q gi|254780398|r 94 P-NRLEIIQDDALKVDFEKFFNISSPI--RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPH 170 (284)
Q Consensus 94 ~-~~~~ii~~Dal~~d~~~~~~~~~~~--~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~ 170 (284)
. +||.+++||--+ -|.+. .|| ..++=-|=+|=++++ -|-+=+=||++|.+.-+
T Consensus 136 ~~~NV~v~~GDG~~-G~~~~----APYd~I~~~AA~k~iP~AL~-------------------~QL~eGG~L~~Pv~~~d 191 (228)
T TIGR00080 136 GLDNVIVIEGDGRQ-GWEEK----APYDAILVTAAAKEIPKALI-------------------DQLEEGGILVLPVGEVD 191 (228)
T ss_pred CCCCEEEEECCCCC-CHHHC----CCCCEEEEECCCCCCCHHHH-------------------HHHHHCCEEEECCEEEC
T ss_conf 68865899778865-71024----88352775237898765789-------------------99972898862000006
Q ss_pred HHHHHHHHCCCC-CEEEECCCCCCEECCC
Q ss_conf 323454320133-2012000110000105
Q gi|254780398|r 171 YGRLSVLTGWRT-KATMMFDISPHVFFPS 198 (284)
Q Consensus 171 Yg~LSv~~q~~~-~v~~~~~V~~~~F~P~ 198 (284)
|.-.=..+.=.- +-.....|.+-.|.|-
T Consensus 192 ~~Q~l~~~~k~nn~~~~~k~~E~v~FVPl 220 (228)
T TIGR00080 192 EEQVLKRVEKRNNGEIIIKVVEKVLFVPL 220 (228)
T ss_pred CCEEEEEEEEECCCEEEEEECCCEEEEEE
T ss_conf 75379999870896067531176677542
No 58
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=4.6e-05 Score=51.79 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 65841123989999999971989998799975898823467750235259984255430368878753220012200000
Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 (284)
Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~D 103 (284)
-+|+-.==....+-+..+... .++.+||++|||.|.|+.+.++.+|+.++++++|+..++..+++... |++... .-
T Consensus 140 AFGTG~HpTT~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~--N~v~~~-~~ 215 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL--NGVELL-VQ 215 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH--CCCCHH-HH
T ss_conf 367887801799999999860-58987998267815999999981986689971888999999999997--699602-20
Q ss_pred HCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 001431552133222011202322467889999985
Q gi|254780398|r 104 ALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWIS 139 (284)
Q Consensus 104 al~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~ 139 (284)
+..++.........--.||+|+ ++.++ ..+..
T Consensus 216 ~~~~~~~~~~~~~~~DvIVANI---LA~vl-~~La~ 247 (300)
T COG2264 216 AKGFLLLEVPENGPFDVIVANI---LAEVL-VELAP 247 (300)
T ss_pred CCCCCCHHHCCCCCCCEEEEHH---HHHHH-HHHHH
T ss_conf 0345630001368656898605---27899-99999
No 59
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=97.95 E-value=2.4e-05 Score=53.56 Aligned_cols=100 Identities=26% Similarity=0.313 Sum_probs=72.7
Q ss_pred CCCCCCCCCCHH--------HH--HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 365841123989--------99--999997198999879997589882346775023-5259984255430368878753
Q gi|254780398|r 23 KYMGQNFLLDLN--------IL--KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 23 k~lGQnFL~d~~--------i~--~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~ 91 (284)
|..|-.|.+|.. .. .++++.+ .+++.|+..-+|.|..+..+++.+ +.+|+|+|+++..++.++++..
T Consensus 68 ~E~G~~f~~D~~kvyfs~rl~~Er~ri~~~~--~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~ 145 (199)
T pfam02475 68 KENGCRFKIDVSKVYFSPRLIGERERIAKLV--KEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIK 145 (199)
T ss_pred EECCCEEEEECCEEEEECCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 9679299984420799547658899999744--89988998168865778998640786489998289999999999999
Q ss_pred H--HHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf 2--2001220000000143155213322201120232246
Q gi|254780398|r 92 Q--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 (284)
Q Consensus 92 ~--~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284)
- ..++++++++|+.++-... .--+|+-|+|..-
T Consensus 146 lN~v~~~i~~~~gD~~~~~~~~-----~~DrvimnlP~~a 180 (199)
T pfam02475 146 LNKVEGVISPILGDVRDVILEG-----VADRVIMNLPKSA 180 (199)
T ss_pred HHCCCCCEEEEECCHHHHCCCC-----CCCEEEECCCCCH
T ss_conf 8099983699928787860467-----4009994897316
No 60
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=97.94 E-value=5.5e-05 Score=51.35 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=81.5
Q ss_pred HHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCCHHHHCCCCH
Q ss_conf 99999999719---8999879997589882346775023525998425543036887875322001-2200000001431
Q gi|254780398|r 34 NILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-LEIIQDDALKVDF 109 (284)
Q Consensus 34 ~i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~-~~ii~~Dal~~d~ 109 (284)
.+-+.+-..++ ..++..||++=+|+|++..+-+.|||++|++||.|...+..+++........ -.++.+|+..+
T Consensus 27 rvrEalFniL~~~~~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~-- 104 (181)
T pfam03602 27 RVREALFNILAPYFELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARAL-- 104 (181)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHH--
T ss_conf 899999975013455489879982787269899999769988999969999999999999985899779981089999--
Q ss_pred HHHCCCCCCE-EEEECCCHHHH--HHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCC------HHHHHH
Q ss_conf 5521332220-11202322467--8899999852010000001102033447887530123------123323
Q gi|254780398|r 110 EKFFNISSPI-RIIANLPYNIG--TRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKN------SPHYGR 173 (284)
Q Consensus 110 ~~~~~~~~~~-~vvgNLPYnIs--s~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg------~k~Yg~ 173 (284)
........++ .|+.-.||+-. ..++..+...... -...++.++.+-.+.+...|+ +|.||.
T Consensus 105 ~~~~~~~~~fdiIF~DPPY~~~~~~~~l~~l~~~~~l---~~~~iiiiE~~~~~~~~~~~~~~~~~k~k~YG~ 174 (181)
T pfam03602 105 LRLAGKGPPFDLVFLDPPYAKGLIEEALELLAEKGWL---NPNALIVVETESDEELPEQPANLELVREKKYGQ 174 (181)
T ss_pred HHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCCCCCCCCEEEEEEEECCC
T ss_conf 8753357888766359975420699999999966665---798099999668778666898708999994498
No 61
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=97.92 E-value=1.3e-05 Score=55.25 Aligned_cols=89 Identities=20% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC----------CEEEEECCCCCCHHHHHHHHHH-
Q ss_conf 65841123989999999971989998799975898823467750235----------2599842554303688787532-
Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA----------RKVIVIEKDQQFFPILKDISSQ- 92 (284)
Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~----------~~v~aiEiD~~~~~~l~~~~~~- 92 (284)
|+|||=+=-+..++.+....+..++..||++-+|||-++..+.+..+ .+|+++++.+.|.+..+++...
T Consensus 20 SfG~h~~Wr~~~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~ 99 (242)
T TIGR01934 20 SFGLHRLWRRRAVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNE 99 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 67432899999999878623688889778872383999999986357555335776337898707988999998741342
Q ss_pred ----HHCCCCCCHHHHCCCCHHHH
Q ss_conf ----20012200000001431552
Q gi|254780398|r 93 ----HPNRLEIIQDDALKVDFEKF 112 (284)
Q Consensus 93 ----~~~~~~ii~~Dal~~d~~~~ 112 (284)
..++++.+++||+++.+++.
T Consensus 100 ~r~~~~~~~~f~~~dA~~LPF~D~ 123 (242)
T TIGR01934 100 ERKALSANVSFIEADAEALPFEDN 123 (242)
T ss_pred HHHHHHCCCHHEECHHHCCCCCCC
T ss_conf 003332164211000550879986
No 62
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.89 E-value=3.8e-05 Score=52.35 Aligned_cols=154 Identities=11% Similarity=0.116 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf 398999999997----1989998799975898823467750235259984255430368878753220-01220000000
Q gi|254780398|r 31 LDLNILKKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284)
Q Consensus 31 ~d~~i~~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284)
+|...++++++. ++..+++.|+|.-+|.|.+|..|++. +++|++||+.+..++.+++....+. .+++++.+|+.
T Consensus 213 vN~~~~~~L~~~~~~~~~~~~~~~vlDlycG~G~~sl~lA~~-~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~ 291 (375)
T PRK03522 213 TNPAVAAQLYATARDWVRELPPKSMWDLFCGVGGFGLHCATP-DMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDST 291 (375)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHC-CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 599999999999999863158978999657853888987641-7889999845999999999999869987699973778
Q ss_pred CCCHHHHCCCCCCEEEEECCCHHH-HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH--HHHHHHHHHHCCCC
Q ss_conf 143155213322201120232246-788999998520100000011020334478875301231--23323454320133
Q gi|254780398|r 106 KVDFEKFFNISSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS--PHYGRLSVLTGWRT 182 (284)
Q Consensus 106 ~~d~~~~~~~~~~~~vvgNLPYnI-ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~--k~Yg~LSv~~q~~~ 182 (284)
++-.. ....+-.||-+-|-.= +..++..+.... | ++++. | ...|.| +|...| . -|
T Consensus 292 ~~~~~---~~~~~d~vvvDPPR~Gl~~~~~~~l~~~~--p---~~IvY-V--------SCnP~TlaRDl~~L---~--gy 349 (375)
T PRK03522 292 QFATA---QGEVPELVLVNPPRRGIGKPLCDYLSQMA--P---RFILY-S--------SCNAQTMAKDLAHL---P--GY 349 (375)
T ss_pred HHHHH---CCCCCCEEEECCCCCCCHHHHHHHHHHCC--C---CEEEE-E--------ECCHHHHHHHHHHH---C--CC
T ss_conf 88763---45689789989997775199999998659--9---96999-9--------07989999998884---3--97
Q ss_pred CEEEECCCCCCEECCCC-CCCEEEEEECCC
Q ss_conf 20120001100001057-875788730125
Q gi|254780398|r 183 KATMMFDISPHVFFPSP-KVTSTVIHFIPH 211 (284)
Q Consensus 183 ~v~~~~~V~~~~F~P~P-kVdS~vi~l~pk 211 (284)
. +..+.|-.+||+. .|.+ |+.|++|
T Consensus 350 ~---l~~v~~~DmFPqT~HvE~-v~lL~Rk 375 (375)
T PRK03522 350 R---IERVQLFDMFPHTAHYEV-LTLLVRQ 375 (375)
T ss_pred E---EEEEEEECCCCCCCCEEE-EEEEEEC
T ss_conf 6---889999536989971899-9999959
No 63
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=3.5e-05 Score=52.53 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCCCCCCCCCCCCHH---------HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 9843365841123989---------9999999719899987999758988234677502352599842554303688787
Q gi|254780398|r 19 IIPKKYMGQNFLLDLN---------ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 19 ~~p~k~lGQnFL~d~~---------i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
+-|.+.+.=.|--++. .++.+++.+++.+|++|||||||.|.+....++..--+|+++-+.+.-....++.
T Consensus 35 Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 35 LDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 28987624577579988858999999999997569999998987478844999999998499799966899999999999
Q ss_pred HHH--HHCCCCCCHHHHCCC
Q ss_conf 532--200122000000014
Q gi|254780398|r 90 SSQ--HPNRLEIIQDDALKV 107 (284)
Q Consensus 90 ~~~--~~~~~~ii~~Dal~~ 107 (284)
... ...+++++-.|--++
T Consensus 115 ~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 115 IAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHCCCCCCCEEEECCCCCC
T ss_conf 99759976607996562103
No 64
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.85 E-value=3e-05 Score=52.98 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=65.7
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCC
Q ss_conf 719899987999758988234677502-35-259984255430368878753220-012200000001431552133222
Q gi|254780398|r 42 SSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSP 118 (284)
Q Consensus 42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~ 118 (284)
.+++.+|++||++|+|.|..+...+++ ++ .+|++|++.+.|+..+++...... .++++..||+..+++++- +-
T Consensus 68 ~a~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl~D~----Sf 143 (258)
T PRK11873 68 LAELKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADG----SV 143 (258)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC----CE
T ss_conf 46579999899947887775999999869997799985999999999999997599755999955531368988----35
Q ss_pred EEEEECCCHHHHHH
Q ss_conf 01120232246788
Q gi|254780398|r 119 IRIIANLPYNIGTR 132 (284)
Q Consensus 119 ~~vvgNLPYnIss~ 132 (284)
-.|++|-=.|.+.+
T Consensus 144 DvViSncVlnl~pD 157 (258)
T PRK11873 144 DVIISNCVINLSPD 157 (258)
T ss_pred EEEEECCEEECCCC
T ss_conf 19988246760798
No 65
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=97.84 E-value=3.1e-05 Score=52.90 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=56.8
Q ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCC-CCCEEEEECC
Q ss_conf 879997589882346775023525998425543036887875322--0012200000001431552133-2220112023
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNI-SSPIRIIANL 125 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~-~~~~~vvgNL 125 (284)
..||+.++|.|..|.+++.++ .+|++||+|+..++.++++..-+ .+++++++||++++- +.+... ...-.|+.+.
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~-~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~-~~l~~~~~~~DvVf~sP 79 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVF-CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELL-AKLKFGKIPYDCVFLSP 79 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH-HHHHHCCCCCCEEEECC
T ss_conf 799993778079999999758-9899997989999999998998398731799977599997-88763588755899779
Q ss_pred CH
Q ss_conf 22
Q gi|254780398|r 126 PY 127 (284)
Q Consensus 126 PY 127 (284)
|+
T Consensus 80 PW 81 (165)
T pfam09445 80 PW 81 (165)
T ss_pred CC
T ss_conf 99
No 66
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.82 E-value=0.00013 Score=49.07 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=83.7
Q ss_pred HHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHH
Q ss_conf 899999999719-89998799975898823467750235259984255430368878753220-0122000000014315
Q gi|254780398|r 33 LNILKKIAESSG-SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFE 110 (284)
Q Consensus 33 ~~i~~~iv~~~~-~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~ 110 (284)
..+-+-+-..+. ...+..||++=+|.|+|..+.+.|||++|++||.|...+..+++...... ++.+++++|++++- .
T Consensus 37 drvREalFn~L~~~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L-~ 115 (198)
T PRK10909 37 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFL-A 115 (198)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-H
T ss_conf 889999998757642998799827774688999998799789999789999999999999848886799955699986-2
Q ss_pred HHCCCCCCEEEEECCCHH--HHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHH
Q ss_conf 521332220112023224--67889999985201000000110203344788753
Q gi|254780398|r 111 KFFNISSPIRIIANLPYN--IGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT 163 (284)
Q Consensus 111 ~~~~~~~~~~vvgNLPYn--Iss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~ 163 (284)
.. ...--.|+.-.||. ....++..+...... -...++++..+....+.
T Consensus 116 ~~--~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L---~~~gliiiE~~~~~~l~ 165 (198)
T PRK10909 116 QP--GTPHNVVFVDPPFRKGLLEETINLLEQNGWL---ADDALIYVESEVENGLP 165 (198)
T ss_pred CC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCC---CCCCEEEEEECCCCCCC
T ss_conf 55--9952189989997655599999999988891---89969999954888877
No 67
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=97.81 E-value=6.9e-05 Score=50.73 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCHHHHCCCCCCEEEE
Q ss_conf 89998799975898823467750235259984255430368878753220--0122000000014315521332220112
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNISSPIRII 122 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~~~~~~~~~~~~vv 122 (284)
..+++.||++|+|.|.|..+.++.+|++|+|+++|+..++..+++...+. .++.+...+ +.. ...--.|+
T Consensus 158 ~~~~~~vlD~GcGSGILaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~~~-------~~~-~~~~DlIv 229 (294)
T pfam06325 158 VKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPG-------DLP-EGKADVVV 229 (294)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC-------CCC-CCCCCEEE
T ss_conf 0369867850565089999999759996899988899999999999976998317996443-------155-66457898
Q ss_pred ECCCHHHHHHHHHH
Q ss_conf 02322467889999
Q gi|254780398|r 123 ANLPYNIGTRLLFN 136 (284)
Q Consensus 123 gNLPYnIss~Il~~ 136 (284)
+|+=-++--.+.-.
T Consensus 230 ANIla~~L~~l~~~ 243 (294)
T pfam06325 230 ANILADPLIELAPD 243 (294)
T ss_pred EHHCHHHHHHHHHH
T ss_conf 41089999999999
No 68
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.80 E-value=8.9e-06 Score=56.23 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=69.8
Q ss_pred HHH-HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCC
Q ss_conf 999-7198999879997589882346775023525998425543036887875322001220000000143155213322
Q gi|254780398|r 39 IAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 (284)
Q Consensus 39 iv~-~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~ 117 (284)
+.. ++....-...+|+||+.|.||..|+.+ |..++|+++.+..++..++...+.+| +++.++|+-+.-++.- -
T Consensus 34 ~l~aaLp~~ry~~alE~GCa~G~lT~~LA~R-CdrLla~Dvs~~Av~~Ar~Rla~~~h-V~v~~~~vp~~wP~~~----F 107 (201)
T pfam05401 34 MLRLSLAQGTIANALEVGCAAGAFTERLAPY-CQRLTVIDVMPEAIARARLRMKKWSH-ISWIVSDVQQFSTNEL----F 107 (201)
T ss_pred HHHHHCCCHHHHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCC----E
T ss_conf 9998678343300204356624878999998-74673213629999999998557998-2898256666599888----6
Q ss_pred CEEEEECCCHHHHH
Q ss_conf 20112023224678
Q gi|254780398|r 118 PIRIIANLPYNIGT 131 (284)
Q Consensus 118 ~~~vvgNLPYnIss 131 (284)
.+.|++-+=||+..
T Consensus 108 DLIV~SEVlYYL~d 121 (201)
T pfam05401 108 DLIVVAEVLYYLGD 121 (201)
T ss_pred EEEEEEHHHHHHCC
T ss_conf 27975147786187
No 69
>KOG1500 consensus
Probab=97.80 E-value=4.1e-05 Score=52.12 Aligned_cols=86 Identities=21% Similarity=0.396 Sum_probs=65.3
Q ss_pred CCCCCCCHH----HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCC
Q ss_conf 841123989----99999997198999879997589882346775023525998425543036887875322--001220
Q gi|254780398|r 26 GQNFLLDLN----ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 (284)
Q Consensus 26 GQnFL~d~~----i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~i 99 (284)
-||.+.|-. --+.|.+......+..|+++|+|.|.|+-.-++.|+++|.|||- ..++++++++...+ ..++++
T Consensus 152 QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItV 230 (517)
T KOG1500 152 QQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITV 230 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEH-HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 888888888510789998704334577489981588248999998738653898745-6799999998743663203787
Q ss_pred CHHHHCCCCHHHH
Q ss_conf 0000001431552
Q gi|254780398|r 100 IQDDALKVDFEKF 112 (284)
Q Consensus 100 i~~Dal~~d~~~~ 112 (284)
|.|-+-++.+++-
T Consensus 231 I~GKiEdieLPEk 243 (517)
T KOG1500 231 IPGKIEDIELPEK 243 (517)
T ss_pred CCCCCCEECCCCC
T ss_conf 0563201037510
No 70
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=97.79 E-value=0.00015 Score=48.63 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=80.9
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99981898433658411239899999999719899987999758988234677-50235259984255430368878753
Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~L-l~~~~~~v~aiEiD~~~~~~l~~~~~ 91 (284)
.|++|.-...--+|- ..+..+.+|++.+++.++|..+++|+|-|.+.-+. +..+|+.-..||+-+..+..++....
T Consensus 11 ~L~~Y~~fs~~vYGE---llp~fis~ii~~~~l~~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~~~ 87 (205)
T pfam08123 11 KLNHYKAFSNEVYGE---LLPEFLSDVLDKCNLGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDE 87 (205)
T ss_pred HHCCCCCCCCCCCCC---CCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 860678999755113---58899999999839897688998588832999999987096538888865668999999999
Q ss_pred H----------HHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH
Q ss_conf 2----------200122000000014315521332220112023224
Q gi|254780398|r 92 Q----------HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 (284)
Q Consensus 92 ~----------~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn 128 (284)
. .++.+++++|||++-...+..-.+....+|.|.=|.
T Consensus 88 ~~~~~~~~~G~~~~~~~l~~gdFl~~~~~~~~~~~a~VI~vNN~~F~ 134 (205)
T pfam08123 88 EFKKRCKLFGKKLGKIEFIRGSFLDNERVEEIIPEADVILVNNFAFD 134 (205)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999999588768738997777885889986347988999432469
No 71
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=97.76 E-value=4.9e-05 Score=51.63 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=62.9
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHH--HCCCCC
Q ss_conf 65841123989999999971989998799975898823467750235--25998425543036887875322--001220
Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH--PNRLEI 99 (284)
Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~--~~~~~i 99 (284)
.++| -++.+....-+.-.+.......|||||.|.|.=|..++..-+ .+|+++|+|+..+..+++.+... .+++++
T Consensus 22 ~~~~-m~i~~~~g~~L~~l~~~~~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~ 100 (204)
T pfam01596 22 PLSQ-MQISPEEGQFLSMLVKLVGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEF 100 (204)
T ss_pred CCCC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9976-614999999999999975987899983432599999998489996899998048999999999997798744799
Q ss_pred CHHHHCCC
Q ss_conf 00000014
Q gi|254780398|r 100 IQDDALKV 107 (284)
Q Consensus 100 i~~Dal~~ 107 (284)
+.|||++.
T Consensus 101 ~~gdA~~~ 108 (204)
T pfam01596 101 RVGDALKT 108 (204)
T ss_pred EEECHHHH
T ss_conf 98749999
No 72
>PHA02056 putative methyltransferase
Probab=97.72 E-value=3.7e-05 Score=52.40 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf 12398999999997198999879997589882346775023-52599842554303688787532200122000000014
Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284)
Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284)
|.+-..++..+. ++..-.-.|++.++|.|.|+.+++.+. +.++++||.++.++.+-++++.+ -++|++|++++
T Consensus 48 FFTP~~lA~DF~--IDa~~tG~iiDLCAGIG~LSy~~~~r~kp~~ivCVErN~~y~~vGkkilPe----AtWI~~Dv~~~ 121 (279)
T PHA02056 48 FFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPE----AEWITSDVFEF 121 (279)
T ss_pred EECHHHHHHHEE--EECCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCC----CEEEECCEECC
T ss_conf 435156430225--502578538882146123579998506886358994085798864320764----02773231303
Q ss_pred CHHHHCCCCCCEEEEECCCHH
Q ss_conf 315521332220112023224
Q gi|254780398|r 108 DFEKFFNISSPIRIIANLPYN 128 (284)
Q Consensus 108 d~~~~~~~~~~~~vvgNLPYn 128 (284)
.....++ -+|||.||.
T Consensus 122 ~~~~~FD-----~aIsNPPFG 137 (279)
T PHA02056 122 ESNEKFD-----VVISNPPFG 137 (279)
T ss_pred CCCCCEE-----EEECCCCCC
T ss_conf 5666200-----453389976
No 73
>PRK04457 spermidine synthase; Provisional
Probab=97.72 E-value=5.6e-05 Score=51.29 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCC
Q ss_conf 999999971989-9987999758988234677502352-599842554303688787532--2001220000000143
Q gi|254780398|r 35 ILKKIAESSGSL-DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVD 108 (284)
Q Consensus 35 i~~~iv~~~~~~-~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d 108 (284)
-.+.|+..+-.. ....|+-||-|.|++++.+.+..+. ++++||||+..++.+++-|.- .+.+++|+++|+.++-
T Consensus 53 Ytr~Mm~~LLf~p~Pk~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg~~fv 130 (262)
T PRK04457 53 YSRAMMGFLLFNPRPQHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
T ss_conf 899999998658997869999257019999999839867589998788999999986579999972699955389998
No 74
>PRK06202 hypothetical protein; Provisional
Probab=97.69 E-value=9.6e-05 Score=49.82 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=53.5
Q ss_pred HHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 899999999719--899987999758988234677502352-----5998425543036887875322001220000000
Q gi|254780398|r 33 LNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGAR-----KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284)
Q Consensus 33 ~~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~~~~~-----~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284)
..+...+.+.+. ....-.|||||||.|.++..|++...+ +++++++++..+.++++......-.++....|++
T Consensus 45 ~~~~~~~~~~~~~~~~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l 124 (233)
T PRK06202 45 RGLYRRHLRPALRAPDRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDEL 124 (233)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHH
T ss_conf 99999999999758788728998347875799999999975599638999779889999998734036983699734320
Q ss_pred CCC
Q ss_conf 143
Q gi|254780398|r 106 KVD 108 (284)
Q Consensus 106 ~~d 108 (284)
..+
T Consensus 125 ~~~ 127 (233)
T PRK06202 125 VAE 127 (233)
T ss_pred CCC
T ss_conf 245
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0001 Score=49.68 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=79.2
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCC
Q ss_conf 9999719899987999758988234677502352-59984255430368878753220-012200000001431552133
Q gi|254780398|r 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNI 115 (284)
Q Consensus 38 ~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~ 115 (284)
-.++++....+..|+++|||.|.|...+++..+. +++.+|+|.+.++..++....+. .+..+..+|.-. +..+
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~---- 223 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG---- 223 (300)
T ss_pred HHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCC----
T ss_conf 99973775569968870788429999999868987289982669999998876997398763799812446-6544----
Q ss_pred CCCEEEEECCCHHHHHHHHH----HHHHH--HCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 22201120232246788999----99852--0100000011020334478875301231233234543201332012000
Q gi|254780398|r 116 SSPIRIIANLPYNIGTRLLF----NWISA--DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFD 189 (284)
Q Consensus 116 ~~~~~vvgNLPYnIss~Il~----~ll~~--~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~ 189 (284)
.--.||+|.|++-.-.+.. .++.. ....++.+ + +|+|. |-..| -.++-..|.+++.+-+
T Consensus 224 -kfd~IisNPPfh~G~~v~~~~~~~ii~~A~~~L~~gGe-L----------~iVan-~~l~y--~~~L~~~Fg~v~~la~ 288 (300)
T COG2813 224 -KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE-L----------WIVAN-RHLPY--EKKLKELFGNVEVLAK 288 (300)
T ss_pred -CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE-E----------EEEEC-CCCCH--HHHHHHHCCCEEEEEE
T ss_conf -00689848884677101678899999999976045977-9----------99975-88896--8999986287799983
No 76
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.67 E-value=7.4e-05 Score=50.53 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf 398999999997----1989998799975898823467750235259984255430368878753220-01220000000
Q gi|254780398|r 31 LDLNILKKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284)
Q Consensus 31 ~d~~i~~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284)
+|..+++++++. ++...++ |||.=||.|.+|..|++. +++|++||+++..++.+++....+. .+++++.+|+-
T Consensus 188 vN~~~~e~l~~~a~~~~~~~~~~-vlDLYcG~Gtfsl~LA~~-~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~ 265 (363)
T PRK05031 188 PNAAVNEKMLEWALDATKGSKGD-LLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 265 (363)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 79899999999999976138982-898605866426998862-6879999538999999999999869986499965899
Q ss_pred CCCHH--------HHC----CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHH---HCCCH--
Q ss_conf 14315--------521----33222011202322467889999985201000000110203344788753---01231--
Q gi|254780398|r 106 KVDFE--------KFF----NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT---AQKNS-- 168 (284)
Q Consensus 106 ~~d~~--------~~~----~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~---a~pg~-- 168 (284)
++.-. .+. ....+-.||-+-|=.=.++-..+++.. + +||+ ..|.|
T Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvDPPR~Gl~~~~~~~i~~------~------------~rIVYVSCnP~Tla 327 (363)
T PRK05031 266 EFTQAMNGVREFRRLKGIDLKSYNFSTIFVDPPRAGLDEETLKLVQN------Y------------ERILYISCNPETLK 327 (363)
T ss_pred HHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHC------C------------CEEEEEECCHHHHH
T ss_conf 99998734310100124664435586489899988874999999836------8------------90999928989999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCEECCCC-CCCEEEEEECCC
Q ss_conf 2332345432013320120001100001057-875788730125
Q gi|254780398|r 169 PHYGRLSVLTGWRTKATMMFDISPHVFFPSP-KVTSTVIHFIPH 211 (284)
Q Consensus 169 k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~P-kVdS~vi~l~pk 211 (284)
+| +..+.+. |++ -.+.+-..||+. .|.+.++ |++|
T Consensus 328 RD---l~~L~~~-y~l---~~v~~vDmFPqT~HvE~val-L~rk 363 (363)
T PRK05031 328 EN---LETLSQT-HKV---ERFALFDQFPYTHHMECGVL-LEKK 363 (363)
T ss_pred HH---HHHHHHC-CEE---EEEEEECCCCCCCCEEEEEE-EEEC
T ss_conf 99---9998744-658---89998426999972789999-9809
No 77
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.66 E-value=0.00027 Score=47.06 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHCCC---CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 2398999999997198---9998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r 30 LLDLNILKKIAESSGS---LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 30 L~d~~i~~~iv~~~~~---~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
.+++--.+.|-+.+.. .++..||+||||-|.|++.+++.|+ .|+++++.+..+++++....+.. +. .|...
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~g--v~---i~y~~ 112 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESG--VN---IDYRQ 112 (243)
T ss_pred EECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCC--CC---CCCHH
T ss_conf 40541221325544201477777088745883286499997799-46974387677899987544246--32---25223
Q ss_pred CCHHHHCCCCCCEEEEEC
Q ss_conf 431552133222011202
Q gi|254780398|r 107 VDFEKFFNISSPIRIIAN 124 (284)
Q Consensus 107 ~d~~~~~~~~~~~~vvgN 124 (284)
...+++...+++|.||-+
T Consensus 113 ~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 113 ATVEDLASAGGQFDVVTC 130 (243)
T ss_pred HHHHHHHHCCCCCCEEEE
T ss_conf 329999724897448977
No 78
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.66 E-value=2.6e-05 Score=53.35 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=47.9
Q ss_pred EEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 99758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r 52 IEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 52 lEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
||||||.|..+..+++....+++++|+++.+++.+++.... .+++++++|+.+++++
T Consensus 1 LDiGcG~G~~~~~l~~~~~~~v~giD~s~~~i~~a~~~~~~--~~~~~~~~d~~~~~~~ 57 (95)
T pfam08241 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQE--DGLTFVVGDAEDLPFP 57 (95)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC--CCCEEEEECCCCCCCC
T ss_conf 96462499999999845799999994978998776631026--6947998033246755
No 79
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=97.66 E-value=7e-05 Score=50.67 Aligned_cols=79 Identities=27% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf 89998799975898823467750235259984255430368878753220012200000001431552133222011202
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284)
+.++..||++|||.|.|...|.+...-.+.+||+|+..+....+ ..+.++++|+-+ .+..+.+.. +-+|
T Consensus 11 I~~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~------kg~~Vi~~D~d~-~l~~f~d~s--FD~V-- 79 (193)
T pfam07021 11 IPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVA------KGLSVIQGDADK-GLEHFPDKS--FDYV-- 79 (193)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHH------CCCCEECCCHHH-CHHHCCCCC--CCEE--
T ss_conf 58969899836889899999987669876983389999999986------479545077445-974577678--0378--
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 32246788999998
Q gi|254780398|r 125 LPYNIGTRLLFNWI 138 (284)
Q Consensus 125 LPYnIss~Il~~ll 138 (284)
|.|+.|..+-
T Consensus 80 ----Ils~vLqhl~ 89 (193)
T pfam07021 80 ----ILSQTLQATR 89 (193)
T ss_pred ----EHHHHHHHHC
T ss_conf ----6987998752
No 80
>KOG1270 consensus
Probab=97.64 E-value=0.00018 Score=48.16 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--C-----CCCCCHHHHCCCCHHHHCCCCCCE
Q ss_conf 998799975898823467750235259984255430368878753220--0-----122000000014315521332220
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--N-----RLEIIQDDALKVDFEKFFNISSPI 119 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~-----~~~ii~~Dal~~d~~~~~~~~~~~ 119 (284)
.|..||++|||.|-||+.|++.++ .|++|+.-+.+++.+++.....| + +++..+.|+-..- .+|
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--------~~f 159 (282)
T KOG1270 89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--------GKF 159 (282)
T ss_pred CCCEEEEECCCCCCCCHHHHHHCC-EEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHCC--------CCC
T ss_conf 786478723675502323575088-56852655999999987510490330564146302015332145--------656
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHH--HCCC------HHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 11202322467889999985201000000110203344788753--0123------123323454320133201200011
Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERIT--AQKN------SPHYGRLSVLTGWRTKATMMFDIS 191 (284)
Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~--a~pg------~k~Yg~LSv~~q~~~~v~~~~~V~ 191 (284)
-.| +.+.++.+.-. -.||.+.+. .+|| +-+..-+|-....++.=..+..||
T Consensus 160 DaV------vcsevleHV~d---------------p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp 218 (282)
T KOG1270 160 DAV------VCSEVLEHVKD---------------PQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVP 218 (282)
T ss_pred CEE------EEHHHHHHHHC---------------HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 454------41989998747---------------899999999984889825864112337776221129999886458
Q ss_pred CCEECCC
Q ss_conf 0000105
Q gi|254780398|r 192 PHVFFPS 198 (284)
Q Consensus 192 ~~~F~P~ 198 (284)
++-|-+.
T Consensus 219 ~Gth~~e 225 (282)
T KOG1270 219 KGTHTWE 225 (282)
T ss_pred CCCCCHH
T ss_conf 8875778
No 81
>PRK05785 hypothetical protein; Provisional
Probab=97.61 E-value=0.00015 Score=48.54 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHHCCCCCC-------CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEE
Q ss_conf 9778884479999998189843-------365841123989999999971989998799975898823467750235259
Q gi|254780398|r 1 MTMNNKSHSLKTILSHYKIIPK-------KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKV 73 (284)
Q Consensus 1 ~~~~~~~~~i~~ll~~~~~~p~-------k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v 73 (284)
|.++.+-+.++++..+ +.++ =++|||-+=-...++.+....+ .++..||++|+|+|.++..+.+. .++
T Consensus 1 ~~~~~~~e~V~~mF~~--IA~~YD~~N~~mSlG~~~~Wrr~~v~~~~~~~~-~~~~~vLDva~GTGd~a~~l~~~--~~v 75 (225)
T PRK05785 1 MGLGASWEELQEAYNK--IPKAYERANRLITFGNVDRWRAEAVKLIYKYDG-KSPLKVLDAGAGPGNMAYHLRKI--RYV 75 (225)
T ss_pred CCCCCCHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCHHHHHHHHCC--CEE
T ss_conf 9988888999999998--877899888898289709999999999873067-88882899568843999996347--869
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf 98425543036887875322001220000000143155
Q gi|254780398|r 74 IVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 74 ~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284)
+++++.+.+.+..+.. ..-+.+||.++.+++
T Consensus 76 ~~~D~s~~ML~~a~~~-------~~~v~~~ae~LPf~d 106 (225)
T PRK05785 76 VALDYTEEMLRLNLVA-------DDKVVGSFEAMPFRD 106 (225)
T ss_pred EEEECCHHHHHHHHHC-------CCCEEEHHHHCCCCC
T ss_conf 9998899999987643-------211373185399998
No 82
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00012 Score=49.28 Aligned_cols=78 Identities=21% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHC-CCCCCHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf 987999758988234677502352-599842554303688787532200-122000000014315521332220112023
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKVDFEKFFNISSPIRIIANL 125 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~-~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL 125 (284)
.-.+||||+|.|..+..++++.|. ..++||+-..-+..+.+......- |+.++++||..+- +.+.+.++=-+|.=|-
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l-~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL-DYLIPDGSLDKIYINF 127 (227)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHCCCCCCEEEEEEEC
T ss_conf 966999688898789999987898778999973489999999999829984699807799999-7358988565799979
Q ss_pred C
Q ss_conf 2
Q gi|254780398|r 126 P 126 (284)
Q Consensus 126 P 126 (284)
|
T Consensus 128 P 128 (227)
T COG0220 128 P 128 (227)
T ss_pred C
T ss_conf 9
No 83
>PRK06922 hypothetical protein; Provisional
Probab=97.56 E-value=0.00013 Score=48.99 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=57.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHH-HHHHHCCCCCCHHHHCCCCHHHHCCC-CCCEE
Q ss_conf 9899987999758988234677502352-599842554303688787-53220012200000001431552133-22201
Q gi|254780398|r 44 GSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDI-SSQHPNRLEIIQDDALKVDFEKFFNI-SSPIR 120 (284)
Q Consensus 44 ~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~-~~~~~~~~~ii~~Dal~~d~~~~~~~-~~~~~ 120 (284)
+--.|+.+++||||.|.+-..+-+..+. .++.|++....++.|++. ..+.. .-+++.||||++ .+.+.+ +..+.
T Consensus 417 dyi~G~~ivdiG~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~k-sW~V~~gDAL~l--~d~f~~eSvdTi 493 (679)
T PRK06922 417 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINL--SSSFEKESVDTI 493 (679)
T ss_pred ECCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCC-CCEEECCCCCCC--HHHCCCCCCCEE
T ss_conf 00147679986699621487667658998614666608899999887775489-842321430361--543475666468
Q ss_pred EEEC
Q ss_conf 1202
Q gi|254780398|r 121 IIAN 124 (284)
Q Consensus 121 vvgN 124 (284)
++|.
T Consensus 494 v~sS 497 (679)
T PRK06922 494 VYSS 497 (679)
T ss_pred EEHH
T ss_conf 7427
No 84
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00019 Score=47.98 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=85.3
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHH
Q ss_conf 65841123989999999971989998799975898823467750235259984255430368878753220-01220000
Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQD 102 (284)
Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~ 102 (284)
..-+-==.++.+++-+|..+.+.+|+.||+==||+|++-.+.--.|+ ++++.++|.+++.-.+.+++++. ..+.+...
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 85676885989999987774164698764576783488883664275-67603237999855664156627676168873
Q ss_pred -HHCCCCHHHHCCCCCCEEEEECCCHHHHHHH
Q ss_conf -0001431552133222011202322467889
Q gi|254780398|r 103 -DALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 (284)
Q Consensus 103 -Dal~~d~~~~~~~~~~~~vvgNLPYnIss~I 133 (284)
||.+.++++. .--.++.-.||.+||.+
T Consensus 253 ~Da~~lpl~~~----~vdaIatDPPYGrst~~ 280 (347)
T COG1041 253 LDATNLPLRDN----SVDAIATDPPYGRSTKI 280 (347)
T ss_pred CCCCCCCCCCC----CCCEEEECCCCCCCCCC
T ss_conf 02212778877----42358846998710024
No 85
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00015 Score=48.60 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHCC----CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH-----HCCCCCCH
Q ss_conf 9899999999719----89998799975898823467750235-25998425543036887875322-----00122000
Q gi|254780398|r 32 DLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQH-----PNRLEIIQ 101 (284)
Q Consensus 32 d~~i~~~iv~~~~----~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~-----~~~~~ii~ 101 (284)
|+-+-..++.+.. ..+ ..||-||-|.|+.++++++..+ .++++||||+..++..++-+... +.|++++.
T Consensus 58 de~~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i 136 (282)
T COG0421 58 DEFIYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIII 136 (282)
T ss_pred HHHHHHHHHHHCHHHHCCCC-CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 26889999870306437997-76999889766999999836884337999708899999998666754335797368996
Q ss_pred HHHCCCCHHHHCCCCCCEEE--EECCCH-----HHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHH
Q ss_conf 00001431552133222011--202322-----46788999998520100000011020334478875301231233234
Q gi|254780398|r 102 DDALKVDFEKFFNISSPIRI--IANLPY-----NIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 (284)
Q Consensus 102 ~Dal~~d~~~~~~~~~~~~v--vgNLPY-----nIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~L 174 (284)
+|+.++=- +. ...+-| +=--+. +.-|.-..+-+.....+ ..+++.|- |+..| ..
T Consensus 137 ~Dg~~~v~-~~---~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~----~Gi~v~q~----------~~~~~-~~ 197 (282)
T COG0421 137 DDGVEFLR-DC---EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKE----DGIFVAQA----------GSPFL-QD 197 (282)
T ss_pred CCHHHHHH-HC---CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC----CCEEEEEC----------CCCCC-CH
T ss_conf 10799987-48---876778998588998843023779999999986288----96899944----------78432-40
Q ss_pred HHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEE
Q ss_conf 5432013320120001100001057875788730
Q gi|254780398|r 175 SVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHF 208 (284)
Q Consensus 175 Sv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l 208 (284)
......+-.++.+|.+-+....|.|-..|....+
T Consensus 198 ~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f 231 (282)
T COG0421 198 EEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGF 231 (282)
T ss_pred HHHHHHHHHHHHHCCCCCCCEECCCEECCCCEEE
T ss_conf 7899999877753435655210241222781589
No 86
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.48 E-value=0.00022 Score=47.53 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=47.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHH-HHHHCCCCCCHHHHCCC
Q ss_conf 9987999758988234677502352-5998425543036887875-32200122000000014
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS-SQHPNRLEIIQDDALKV 107 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~-~~~~~~~~ii~~Dal~~ 107 (284)
+...+||||+|.|.-+..+++.++. .++++|+-..-+..+-... ...-.|+.++++||..+
T Consensus 54 ~~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~ 116 (229)
T PRK00121 54 DAPIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEV 116 (229)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 994399961589699999998688886899996169999999999982998389883478999
No 87
>KOG3420 consensus
Probab=97.47 E-value=0.00014 Score=48.74 Aligned_cols=105 Identities=17% Similarity=0.303 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 843365841123989999999971----9899987999758988234677502352599842554303688787532200
Q gi|254780398|r 20 IPKKYMGQNFLLDLNILKKIAESS----GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPN 95 (284)
Q Consensus 20 ~p~k~lGQnFL~d~~i~~~iv~~~----~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~ 95 (284)
+|+-.|-| |.+.+.++.-|+..+ +.-+|..++.+|+|.|.|+.+-.--++..|+.++||+...++...+..++.-
T Consensus 18 Kpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420 18 KPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred CCCHHHHH-CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHH
T ss_conf 43124551-79967899999999986201204746225247611567775057873378640588999998616687523
Q ss_pred CCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf 1220000000143155213322201120232246
Q gi|254780398|r 96 RLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 (284)
Q Consensus 96 ~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284)
+..+.++|+++.-+.. +.--..|=|-||.-
T Consensus 97 qidlLqcdildle~~~----g~fDtaviNppFGT 126 (185)
T KOG3420 97 QIDLLQCDILDLELKG----GIFDTAVINPPFGT 126 (185)
T ss_pred HHHEEEEECCCHHCCC----CEEEEEEECCCCCC
T ss_conf 3421222215511058----76766786689876
No 88
>KOG2915 consensus
Probab=97.47 E-value=0.00027 Score=47.01 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHH
Q ss_conf 9999997198999879997589882346775023-5-25998425543036887875322--00122000000014315
Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFE 110 (284)
Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~ 110 (284)
+.-|...+++.+|+.|+|-|.|-|+++.++++.- + .+++.+|.++..++...+.|..+ +.++++++.|+..--+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 9999998657999789863788634889999863767626999832878999999999737786348999641567735
No 89
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00018 Score=48.19 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=67.4
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC
Q ss_conf 999999719899987999758988234677502352-5998425543036887875322001220000000143155213
Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 (284)
Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~ 114 (284)
+...+..+.+.....|.++|||+|..|+.|+++-+. .+++++-++.|++.+++.. ++ .+...+|+-.+..++-.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~-~~f~~aDl~~w~p~~~~- 93 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PD-ATFEEADLRTWKPEQPT- 93 (257)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC---CC-CCEECCCHHHCCCCCCC-
T ss_conf 88998647866641034557788778899998688886760469999999999748---99-73210527544998763-
Q ss_pred CCCCEEEEECCCHHH---HHHHHHHHHHH
Q ss_conf 322201120232246---78899999852
Q gi|254780398|r 115 ISSPIRIIANLPYNI---GTRLLFNWISA 140 (284)
Q Consensus 115 ~~~~~~vvgNLPYnI---ss~Il~~ll~~ 140 (284)
--+++|-=++= -..++-+|++.
T Consensus 94 ----dllfaNAvlqWlpdH~~ll~rL~~~ 118 (257)
T COG4106 94 ----DLLFANAVLQWLPDHPELLPRLVSQ 118 (257)
T ss_pred ----CHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf ----3033443664436408999999985
No 90
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=97.46 E-value=0.0004 Score=45.96 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=97.7
Q ss_pred CCHHHHHH----HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf 39899999----99971989998799975898823467750235259984255430368878753220-01220000000
Q gi|254780398|r 31 LDLNILKK----IAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284)
Q Consensus 31 ~d~~i~~~----iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284)
+|+..... .-++++++..|.||+.=||-|.+|..|+++ ++.+++||+-+++++-.+++...+. .|++..+||+-
T Consensus 274 VN~~~~~~l~~~a~~~l~Lqg~e~V~DayCG~GtftLpLA~q-ak~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E 352 (434)
T TIGR00479 274 VNSEQTEKLVDRALEALELQGEEKVVDAYCGVGTFTLPLAKQ-AKSVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLE 352 (434)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 187677999999999971598655786315755200444401-2188887143767899988888603532013331232
Q ss_pred CCCHHHHC-CCCCCEEEEECCCHHH-HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCH--HHHHHHHHHHCC-
Q ss_conf 14315521-3322201120232246-788999998520100000011020334478875301231--233234543201-
Q gi|254780398|r 106 KVDFEKFF-NISSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNS--PHYGRLSVLTGW- 180 (284)
Q Consensus 106 ~~d~~~~~-~~~~~~~vvgNLPYnI-ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~--k~Yg~LSv~~q~- 180 (284)
+. ++++. ....+-+|+=--|=.= .+.+|..+++... . +.+.. -..|+| +| |-+|+..
T Consensus 353 ~~-~p~~~~e~~~~D~~llDPPR~GCa~~~L~~I~~~kP--~---rivYV---------SCNP~TLARD---l~~L~~~G 414 (434)
T TIGR00479 353 TV-LPKQPWEGISPDVVLLDPPRKGCAAEVLRTIIKLKP--K---RIVYV---------SCNPATLARD---LEVLCKEG 414 (434)
T ss_pred HH-CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCC--E---EEEEE---------ECCCHHHHHH---HHHHHHCC
T ss_conf 11-014422267789888888898745899998862077--0---59998---------4485347999---99997379
Q ss_pred CCCEEEECCCCCCEECCCC
Q ss_conf 3320120001100001057
Q gi|254780398|r 181 RTKATMMFDISPHVFFPSP 199 (284)
Q Consensus 181 ~~~v~~~~~V~~~~F~P~P 199 (284)
||.+. .|.+=.|||..
T Consensus 415 fY~i~---~~q~~DmFPhT 430 (434)
T TIGR00479 415 FYKIE---KVQPVDMFPHT 430 (434)
T ss_pred CEEEE---EEEEEECCCCC
T ss_conf 62678---88543057887
No 91
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=97.45 E-value=0.00031 Score=46.65 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=46.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHH-HH-HHCCCCCCHHHHCCC
Q ss_conf 9987999758988234677502352-5998425543036887875-32-200122000000014
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDIS-SQ-HPNRLEIIQDDALKV 107 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~-~~-~~~~~~ii~~Dal~~ 107 (284)
++..+||||+|.|..+..+++..+. ..+++|+-..-+..+.++. .. .-.|+.++++||..+
T Consensus 20 ~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~ 83 (199)
T pfam02390 20 EQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKL 83 (199)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHH
T ss_conf 9944999736888999999997899878999950599999999999845777378760479999
No 92
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=97.44 E-value=0.00017 Score=48.23 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=42.4
Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 971989998799975898823467750235259984255430368878753
Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~ 91 (284)
+.+.-.+|..||+||||-|-|+++|++.|+..|++|+.-+..++.++.=..
T Consensus 78 ~~~~~~~G~~vLDVGCGGGlLsE~lAR~Ga~~V~GID~~~~~i~~Ak~Ha~ 128 (275)
T TIGR01983 78 DELLKDSGLRVLDVGCGGGLLSEPLARLGANKVTGIDASEENIEVAKLHAK 128 (275)
T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 634117897799842785788899975588425775211779999998887
No 93
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00034 Score=46.39 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCHHHHHHHHH----HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHC
Q ss_conf 39899999999----71989998799975898823467750235259984255430368878753220-01220000000
Q gi|254780398|r 31 LDLNILKKIAE----SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDAL 105 (284)
Q Consensus 31 ~d~~i~~~iv~----~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal 105 (284)
.+..++.++.+ .++..+++.||+.=||.|.+|..|+++ .++|+++|+.+..++.+++....+. .|++++.+|+-
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae 351 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAE 351 (432)
T ss_pred ECHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 399999999999999974369977999355887013553124-6579999648999999999999739887799958688
Q ss_pred CCCHHHHCCCCCCEEEEECCCHHHHH-HHHHHHHH
Q ss_conf 14315521332220112023224678-89999985
Q gi|254780398|r 106 KVDFEKFFNISSPIRIIANLPYNIGT-RLLFNWIS 139 (284)
Q Consensus 106 ~~d~~~~~~~~~~~~vvgNLPYnIss-~Il~~ll~ 139 (284)
++-.... ....+-.||=+.|=.=.. ..+..+..
T Consensus 352 ~~~~~~~-~~~~~d~VvvDPPR~G~~~~~lk~l~~ 385 (432)
T COG2265 352 EFTPAWW-EGYKPDVVVVDPPRAGADREVLKQLAK 385 (432)
T ss_pred HHHHHHC-CCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 8865100-257999899899999999899999985
No 94
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00033 Score=46.52 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=58.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCH-HHHCCC
Q ss_conf 89999999971989998799975898823467750235--25998425543036887875322--00122000-000014
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQ-DDALKV 107 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~-~Dal~~ 107 (284)
+..-.-+.-.+.......|||||++.|.=|..++..-+ .+++++|+|+..++.+++.+.+. .++++++. ||+++.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
T ss_conf 14899999999734986499963523799999996388897699970798999999999997597652898835747999
No 95
>KOG1499 consensus
Probab=97.42 E-value=0.00017 Score=48.31 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHH
Q ss_conf 89998799975898823467750235259984255430368878753--2200122000000014315
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~ 110 (284)
+.++..||.||||+|.|+..-++.||++|+|||-- ..+....+... ++.+.++++.|.+-++.+|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP 124 (346)
T KOG1499 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDIELP 124 (346)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECH-HHHHHHHHHHHHCCCCCEEEEEECCEEEEECC
T ss_conf 30797899757881288999887375339999626-89999999998568660599950305787647
No 96
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00038 Score=46.09 Aligned_cols=85 Identities=31% Similarity=0.354 Sum_probs=67.3
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCCC
Q ss_conf 99997198999879997589882346775023525998425543036887875322--0012200000001431552133
Q gi|254780398|r 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFNI 115 (284)
Q Consensus 38 ~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~ 115 (284)
++++... +|+.|+..=+|-|-.|..+++.++..|+|+|+++..+++|+++..-+ .+.+..++||+-.+....
T Consensus 181 Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---- 254 (341)
T COG2520 181 RVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---- 254 (341)
T ss_pred HHHHHHC--CCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCC----
T ss_conf 9986306--9988998357865401246654786399994598999999999985576551567966488850204----
Q ss_pred CCCEEEEECCCHH
Q ss_conf 2220112023224
Q gi|254780398|r 116 SSPIRIIANLPYN 128 (284)
Q Consensus 116 ~~~~~vvgNLPYn 128 (284)
..--+|+-|+|..
T Consensus 255 ~~aDrIim~~p~~ 267 (341)
T COG2520 255 GVADRIIMGLPKS 267 (341)
T ss_pred CCCCEEEECCCCC
T ss_conf 6678898389872
No 97
>PRK11036 putative metallothionein SmtA; Provisional
Probab=97.40 E-value=0.00022 Score=47.55 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=50.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCC
Q ss_conf 9987999758988234677502352599842554303688787532--200122000000014
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKV 107 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~ 107 (284)
..-.||++|+|.|.++..|+++|+ +|+++++.+.+...+++.... ...+++++++|+-++
T Consensus 44 ~plrVLDvG~G~G~~a~~lA~~Gh-~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l 105 (256)
T PRK11036 44 RPLRVLDAGGGEGQTAIKMAELGH-QVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (256)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHH
T ss_conf 998399837987798999997799-79986699999999999988649661279885689988
No 98
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=97.38 E-value=0.00032 Score=46.59 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHH
Q ss_conf 12398999999997----1989998799975898823467750235259984255430368878753220-012200000
Q gi|254780398|r 29 FLLDLNILKKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDD 103 (284)
Q Consensus 29 FL~d~~i~~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~D 103 (284)
|=+|...+.++++. ++..+++ |++.=||.|.+|..|++. +++|++||+.+..++.+++....+. .+++.+.+|
T Consensus 176 fQvN~~~~~~l~~~a~~~~~~~~~~-vlDlYcG~Gtfsl~lA~~-~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~ 253 (353)
T pfam05958 176 TQPNAAVNIKMLEWACEVTQGSKGD-LLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMS 253 (353)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 7869899999999999986268995-899846888888999864-78799996259999999998998699864999728
Q ss_pred HCCCC--------HHHHCC----CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHH
Q ss_conf 00143--------155213----322201120232246788999998520100000011020334478875301231233
Q gi|254780398|r 104 ALKVD--------FEKFFN----ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHY 171 (284)
Q Consensus 104 al~~d--------~~~~~~----~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Y 171 (284)
+.++. +..... ....-.||=+.|=.=..+-+.+++.. +.+ ++.+ -..|.|=..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~i~~~~~~~d~vvlDPPR~G~~~~~~~~i~~------~~r-IvYV--------SCnP~TlaR 318 (353)
T pfam05958 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA------YER-ILYI--------SCNPETLKA 318 (353)
T ss_pred HHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHC------CCC-EEEE--------ECCHHHHHH
T ss_conf 9999998752422332036663224677258489877773999999846------996-8999--------489999999
Q ss_pred HHHHHHHCCCCCEEEECCCCCCEECCCC-CCCEEEEEECCC
Q ss_conf 2345432013320120001100001057-875788730125
Q gi|254780398|r 172 GRLSVLTGWRTKATMMFDISPHVFFPSP-KVTSTVIHFIPH 211 (284)
Q Consensus 172 g~LSv~~q~~~~v~~~~~V~~~~F~P~P-kVdS~vi~l~pk 211 (284)
=+..+..- | .+-.|.|-.+||+. .|.|.++ |++|
T Consensus 319 -Dl~~L~~~-Y---~l~~v~pvDmFPqT~HvE~V~l-L~rK 353 (353)
T pfam05958 319 -NLEQLSET-H---RVERFALFDQFPYTHHMECGVL-LERK 353 (353)
T ss_pred -HHHHHHCC-C---EEEEEEEECCCCCCCEEEEEEE-EECC
T ss_conf -99998406-4---7879998236999971898999-9809
No 99
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.001 Score=43.37 Aligned_cols=94 Identities=22% Similarity=0.373 Sum_probs=72.3
Q ss_pred HHHHHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCH
Q ss_conf 999999997198--9998799975898823467750235259984255430368878753220--012200000001431
Q gi|254780398|r 34 NILKKIAESSGS--LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDF 109 (284)
Q Consensus 34 ~i~~~iv~~~~~--~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~ 109 (284)
.+-+.+-..+.. ..+..+|+.=+|.|+|-.+-+.|+|..+++||.|.+.+..++++..... ++.+++.+|+..+ +
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~-L 106 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA-L 106 (187)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHH-H
T ss_conf 888999987343445798899946876476899985788569999659899999999999848761259984008999-8
Q ss_pred HHHCCCCCCEEEEECCCHH
Q ss_conf 5521332220112023224
Q gi|254780398|r 110 EKFFNISSPIRIIANLPYN 128 (284)
Q Consensus 110 ~~~~~~~~~~~vvgNLPYn 128 (284)
......+.--.|+--.||+
T Consensus 107 ~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHCCCCCCCCEEEECCCCC
T ss_conf 7227788512899689975
No 100
>KOG1540 consensus
Probab=97.34 E-value=0.00042 Score=45.81 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C------CEEEEECCCCCCHHHHHHHHHH--H
Q ss_conf 36584112398999999997198999879997589882346775023-5------2599842554303688787532--2
Q gi|254780398|r 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A------RKVIVIEKDQQFFPILKDISSQ--H 93 (284)
Q Consensus 23 k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~------~~v~aiEiD~~~~~~l~~~~~~--~ 93 (284)
=++|+|=| .-+..|..+++.++..+|+++.|+|.+|-.|++.- . .+|+..+|.+++....+++..+ .
T Consensus 80 mSlGiHRl----WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l 155 (296)
T KOG1540 80 MSLGIHRL----WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL 155 (296)
T ss_pred HHCCHHHH----HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 62123678----88876621587778758983477525677798761134577776179993898999999877751597
Q ss_pred -H-CCCCCCHHHHCCCCHHHH
Q ss_conf -0-012200000001431552
Q gi|254780398|r 94 -P-NRLEIIQDDALKVDFEKF 112 (284)
Q Consensus 94 -~-~~~~ii~~Dal~~d~~~~ 112 (284)
+ .++.++.+||-++++++-
T Consensus 156 ~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540 156 KASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCEEEEECCCCCCCCCCC
T ss_conf 768716999477010899977
No 101
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=97.32 E-value=0.00026 Score=47.13 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECC--------CCCCHHHHHHHHH--HHH-CCCCCCHHHHCCCCHH
Q ss_conf 99987999758988234677502352-5998425--------5430368878753--220-0122000000014315
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEK--------DQQFFPILKDISS--QHP-NRLEIIQDDALKVDFE 110 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEi--------D~~~~~~l~~~~~--~~~-~~~~ii~~Dal~~d~~ 110 (284)
...-.+||||+|.|..-..+++.+|. ..++||+ -+..+..+-+... +.. .|+.++++||.++...
T Consensus 18 ~~~p~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~~ 94 (216)
T TIGR00091 18 NQKPLVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLEK 94 (216)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
T ss_conf 14544898416876026899772799727778999887410227289988755766178442135221360232045
No 102
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=97.29 E-value=0.00049 Score=45.45 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHH-----HCCCCCCH
Q ss_conf 39899999999719---8999879997589882346775023-525998425543036887875322-----00122000
Q gi|254780398|r 31 LDLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQH-----PNRLEIIQ 101 (284)
Q Consensus 31 ~d~~i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~~-----~~~~~ii~ 101 (284)
.|+.+.+.+.-+.. ..+...||=||.|.|...+++++-. .++|+.||+|+..++..++-+... +.+++++.
T Consensus 56 ~De~~YhE~lvH~~~~~~~~pk~VLIiGGGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~ 135 (240)
T pfam01564 56 RDEFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVI 135 (240)
T ss_pred CCHHHHHHHHHCCHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 66888888874537765888553676458657999998567995389997578899999999879852434798559998
Q ss_pred HHHCCC
Q ss_conf 000014
Q gi|254780398|r 102 DDALKV 107 (284)
Q Consensus 102 ~Dal~~ 107 (284)
+|+.++
T Consensus 136 ~Dg~~~ 141 (240)
T pfam01564 136 GDGFKF 141 (240)
T ss_pred HHHHHH
T ss_conf 168999
No 103
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=97.28 E-value=0.0003 Score=46.72 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=50.6
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC---C-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 999997198999879997589882346775023---5-----25998425543036887875322001220000000143
Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG---A-----RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~---~-----~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+.|.+. +.++..||++|||.|.|-..|.+.+ . +.+..||+|..-+-.. .+ .+ +.||++| |+-+
T Consensus 5 ~~I~~~--Ip~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac---~~--RG-v~VIq~D-ld~G 75 (205)
T TIGR02081 5 ELILDL--IPPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLAC---VA--RG-VSVIQGD-LDEG 75 (205)
T ss_pred HHHHHH--CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHH---HH--CC-CCEECCC-CCCC
T ss_conf 889861--68887364101688789999997437898887120001023454459999---86--25-2013006-0034
Q ss_pred HHHHCCCCCCE
Q ss_conf 15521332220
Q gi|254780398|r 109 FEKFFNISSPI 119 (284)
Q Consensus 109 ~~~~~~~~~~~ 119 (284)
++.|.+.+-.+
T Consensus 76 L~~F~D~~FD~ 86 (205)
T TIGR02081 76 LEAFPDKSFDY 86 (205)
T ss_pred CCCCCCCCCCE
T ss_conf 01167887662
No 104
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=97.21 E-value=0.00083 Score=43.99 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 4112398999999997198999879997589882346775023-52-599842554303688787532200122000000
Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-AR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDA 104 (284)
Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Da 104 (284)
.+|-.-+..++.+++.+.+.++..+++.--|.|.=|.++|++. +. +|+|++.|+...+..++.+..+++++++++++|
T Consensus 3 m~~~H~PVll~Evl~~L~~~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF 82 (309)
T PRK00050 3 MEFKHIPVLLDEVVDGLAIKPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPFGGRFTIVHGNF 82 (309)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 88850663189999836828999999938898399999997279998899998988999999998652588289992779
Q ss_pred CCCC
Q ss_conf 0143
Q gi|254780398|r 105 LKVD 108 (284)
Q Consensus 105 l~~d 108 (284)
-+++
T Consensus 83 ~~l~ 86 (309)
T PRK00050 83 SDLA 86 (309)
T ss_pred HHHH
T ss_conf 8899
No 105
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.20 E-value=0.00034 Score=46.40 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=36.7
Q ss_pred EEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99758988234677502352-59984255430368878753220
Q gi|254780398|r 52 IEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP 94 (284)
Q Consensus 52 lEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~ 94 (284)
||||||+|.+|..+++..+. +|+++|+++.+++.+++.+....
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~ 44 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALG 44 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 98863379999999987899889998598899999999998713
No 106
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0015 Score=42.43 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC---------------------------------------
Q ss_conf 39899999999719899987999758988234677502352---------------------------------------
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--------------------------------------- 71 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~--------------------------------------- 71 (284)
+.++++.-|+..++-.++..+++==||.|.+..+.+-..++
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56999999999739999983416887734799999973445687633220045543213888999999999986514766
Q ss_pred -EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH--HHH-HHHHHHH-----H
Q ss_conf -599842554303688787532--2001220000000143155213322201120232246--788-9999985-----2
Q gi|254780398|r 72 -KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI--GTR-LLFNWIS-----A 140 (284)
Q Consensus 72 -~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI--ss~-Il~~ll~-----~ 140 (284)
.++++|+|+++++.++.+... ....+++..+|+-++.-+- ...-.+|+|.||.. .+. .+..|.. .
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~----~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL----EEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCC----CCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 6589874898999999998997698832899974432166876----669989958983011177046999999999999
Q ss_pred HCCCCCCCHHHHEEEHHHHHHHHHCCC
Q ss_conf 010000001102033447887530123
Q gi|254780398|r 141 DTWPPFWESLTLLFQKEVGERITAQKN 167 (284)
Q Consensus 141 ~~~~~~~~~~vlmvQkEvA~Rl~a~pg 167 (284)
...-..|...+|.--.++..++..+..
T Consensus 331 k~~~~~ws~~v~tt~e~~~~~~~~ra~ 357 (381)
T COG0116 331 KRLLAGWSRYVFTTSEDLLFCLGLRAD 357 (381)
T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 987257736999766778899876421
No 107
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0055 Score=38.89 Aligned_cols=154 Identities=22% Similarity=0.338 Sum_probs=78.4
Q ss_pred HHHHHCCC-CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCC-HHHHCCCCHHHHCC
Q ss_conf 99997198-999879997589882346775023525998425543-0368878753220012200-00000143155213
Q gi|254780398|r 38 KIAESSGS-LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQ-FFPILKDISSQHPNRLEII-QDDALKVDFEKFFN 114 (284)
Q Consensus 38 ~iv~~~~~-~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~-~~~~l~~~~~~~~~~~~ii-~~Dal~~d~~~~~~ 114 (284)
++.+.-++ .+++.+|+||+-+|..|.-+++++|++|+|||.-.. +..-|+ ..+ ++.+. ..|+-.+..+++..
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d~-rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----NDP-RVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHH----CCC-CEEEEECCCHHHCCHHHCCC
T ss_conf 9999648688997899826787629999987587479999703774378673----598-47998527831189878176
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEE--EHHHHHHHHHCCC---HHHHHH--HHHHHCCCCCEEEE
Q ss_conf 3222011202322467889999985201000000110203--3447887530123---123323--45432013320120
Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLF--QKEVGERITAQKN---SPHYGR--LSVLTGWRTKATMM 187 (284)
Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmv--QkEvA~Rl~a~pg---~k~Yg~--LSv~~q~~~~v~~~ 187 (284)
.+-.++.-+-| ||...++--+.....+. ..+++++ |=|++...+.+.| .+.+-. ++-..++.- +.-
T Consensus 144 --~~d~~v~DvSF-ISL~~iLp~l~~l~~~~--~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~--~~g 216 (245)
T COG1189 144 --KPDLIVIDVSF-ISLKLILPALLLLLKDG--GDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAK--ELG 216 (245)
T ss_pred --CCCEEEEEEEH-HHHHHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHH--HCC
T ss_conf --77847996423-31998889999742788--638997365555404322768634480158999999998886--459
Q ss_pred CCCCCCEECCCCCCCE
Q ss_conf 0011000010578757
Q gi|254780398|r 188 FDISPHVFFPSPKVTS 203 (284)
Q Consensus 188 ~~V~~~~F~P~PkVdS 203 (284)
+.+-.-.|.|.+-.+.
T Consensus 217 ~~~~gl~~Spi~G~~G 232 (245)
T COG1189 217 FQVKGLIKSPIKGGKG 232 (245)
T ss_pred CEEEEEECCCCCCCCC
T ss_conf 5786557267767878
No 108
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.05 E-value=0.001 Score=43.45 Aligned_cols=112 Identities=27% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-HHH--H
Q ss_conf 1898433658411239899999999719899987999758988234677502352599842554303688787-532--2
Q gi|254780398|r 17 YKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQ--H 93 (284)
Q Consensus 17 ~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~-~~~--~ 93 (284)
.+|+..++.|-+=+.|.. .=|+.+.+..++.||+.-.|+|--...-++++|.+|+.||.|+.-.+.++-+ ++. +
T Consensus 107 dGIrMhrt~~tdP~~Dt~---~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~ 183 (287)
T COG2521 107 DGIRMHRTKGTDPLEDTL---AKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF 183 (287)
T ss_pred CCEEEECCCCCCCHHHHH---HHHHEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCC
T ss_conf 157975136768078887---56624443668784432467138999998758748999960877277413588984202
Q ss_pred HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC-HHHHHHH
Q ss_conf 001220000000143155213322201120232-2467889
Q gi|254780398|r 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLP-YNIGTRL 133 (284)
Q Consensus 94 ~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP-YnIss~I 133 (284)
..++++|.||+-++ .+++.+.+- -.+|-..| +++++.+
T Consensus 184 ~~~i~iilGD~~e~-V~~~~D~sf-DaIiHDPPRfS~AgeL 222 (287)
T COG2521 184 EIAIKIILGDAYEV-VKDFDDESF-DAIIHDPPRFSLAGEL 222 (287)
T ss_pred CCCCEEECCCHHHH-HHCCCCCCC-CEEEECCCCCCHHHHH
T ss_conf 00317861659999-741886530-1686079733102357
No 109
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=97.04 E-value=0.0014 Score=42.64 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 123989999999971989998799975898823467750235--259984255430368878753220012200000001
Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
|-.-+..++.+++.+.+.++..+++.--|.|.=|.+||++.+ .+|++++.|+.....+++.+..+++++++++++|-+
T Consensus 2 f~H~PVll~Evi~~L~~~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~ 81 (310)
T pfam01795 2 FHHISVLLQEVVELLNIKPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPFKGRVTLIHSNFAN 81 (310)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 97641119999972683899999995889719999999848999979999898999999998530258858999253757
Q ss_pred CC
Q ss_conf 43
Q gi|254780398|r 107 VD 108 (284)
Q Consensus 107 ~d 108 (284)
++
T Consensus 82 l~ 83 (310)
T pfam01795 82 LF 83 (310)
T ss_pred HH
T ss_conf 99
No 110
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.99 E-value=0.00044 Score=45.71 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=58.0
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99981898433658411239899999999719899987999758988234677502352599842554303688787532
Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 (284)
Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~ 92 (284)
.-++|++.+-.+ .+++.+...+.-.+|++|||.|.-+..|+.++. .|+|+++.+..+..+++....
T Consensus 9 ~~~~Y~~~~~hs-------------~~~~~~~~~~~g~~LDlgcG~Grna~~La~~G~-~VtavD~s~~al~~~~~~a~~ 74 (198)
T PRK11207 9 FTDKYGLTRTHS-------------EVLEAVKVVKPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPMSIANLERIKAA 74 (198)
T ss_pred HHCCCCCCCCCH-------------HHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHH
T ss_conf 441488899978-------------999873358997477724788786999986898-599997999999999999987
Q ss_pred HH-CCCCCCHHHHCCCCHH
Q ss_conf 20-0122000000014315
Q gi|254780398|r 93 HP-NRLEIIQDDALKVDFE 110 (284)
Q Consensus 93 ~~-~~~~ii~~Dal~~d~~ 110 (284)
.. .+++....|....+++
T Consensus 75 ~~l~~v~~~~~Dl~~~~~~ 93 (198)
T PRK11207 75 ENLDNLHTRVVDLNNLTFD 93 (198)
T ss_pred CCCCEEEEEEECCCCCCCC
T ss_conf 5998246562031238877
No 111
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=96.96 E-value=0.00029 Score=46.87 Aligned_cols=85 Identities=16% Similarity=0.310 Sum_probs=60.4
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99981898433658411239899999999719899987999758988234677502352599842554303688787532
Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 (284)
Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~ 92 (284)
.-++|++.|-+| .+++.+...+.-.+|++|||.|-=+..|++.|. .|+|+++.+..+..+++....
T Consensus 9 f~kky~lt~~HS-------------ev~~a~~~i~pgk~LDlgcG~GRNslyLa~~G~-~VtavD~n~~aL~~l~~ia~~ 74 (192)
T pfam03848 9 FHKKYNTTPTHS-------------EVLEAVKTVKPGKALDLGCGQGRNSLFLSLLGY-DVTAVDHNENSIANLQDIKEK 74 (192)
T ss_pred HHHHCCCCCCCH-------------HHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHH
T ss_conf 776248998809-------------999998637997466604789731899986899-179997999999999999997
Q ss_pred HHCCCCCCHHHHCCCCHHH
Q ss_conf 2001220000000143155
Q gi|254780398|r 93 HPNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 93 ~~~~~~ii~~Dal~~d~~~ 111 (284)
..=.++....|+...++++
T Consensus 75 e~l~i~~~~~Din~~~~~e 93 (192)
T pfam03848 75 ENLDIPTALYDINSASIDE 93 (192)
T ss_pred CCCCCEEEEECCCCCCCCC
T ss_conf 0997526873155568767
No 112
>KOG3191 consensus
Probab=96.92 E-value=0.0031 Score=40.45 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 1239899999999719899987999758988234677502352--59984255430368878753220012200000001
Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
||.=+.+-....+... .....++|||+|.|..|..|.+.... ...|.++++..++.-.+...-+..+++++..|.+.
T Consensus 26 FlLlDaLekd~~eL~~-~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~ 104 (209)
T KOG3191 26 FLLLDALEKDAAELKG-HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS 104 (209)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEHHHHH
T ss_conf 3899999999999861-486058993488465999999741777169995499899988799998557752056525776
Q ss_pred CCHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 43155213322201120232246788
Q gi|254780398|r 107 VDFEKFFNISSPIRIIANLPYNIGTR 132 (284)
Q Consensus 107 ~d~~~~~~~~~~~~vvgNLPYnIss~ 132 (284)
- + ..++--.++=|-||--+++
T Consensus 105 ~----l-~~~~VDvLvfNPPYVpt~~ 125 (209)
T KOG3191 105 G----L-RNESVDVLVFNPPYVPTSD 125 (209)
T ss_pred H----H-CCCCCCEEEECCCCCCCCC
T ss_conf 6----3-3277308997899676985
No 113
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.86 E-value=0.0029 Score=40.59 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 1123989999999971989998799975898823467750235--25998425543036887875322001220000000
Q gi|254780398|r 28 NFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284)
Q Consensus 28 nFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284)
+|..-+.+++..++.+.+.++...++.--|.|.-|+++|++.+ ..+++++.|+..++..++.+..+.++++++++.|-
T Consensus 4 ~~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 4 SFRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 77762117999998526489947998237774768999985898870899768989999999985303784899957687
Q ss_pred CCC
Q ss_conf 143
Q gi|254780398|r 106 KVD 108 (284)
Q Consensus 106 ~~d 108 (284)
.++
T Consensus 84 ~l~ 86 (314)
T COG0275 84 NLA 86 (314)
T ss_pred HHH
T ss_conf 899
No 114
>PRK00811 spermidine synthase; Provisional
Probab=96.78 E-value=0.0034 Score=40.21 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH-----H-HCCCCCCH
Q ss_conf 9899999999719---8999879997589882346775023-52599842554303688787532-----2-00122000
Q gi|254780398|r 32 DLNILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQ-----H-PNRLEIIQ 101 (284)
Q Consensus 32 d~~i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~-----~-~~~~~ii~ 101 (284)
|+-+-+.+..+.. ..+.+.||=||.|.|..-+++++-. ..+|+.||+|+..++..++-+.. + +.|++++.
T Consensus 60 DE~~YhE~lvH~pl~~h~~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~ 139 (283)
T PRK00811 60 DEFIYHEMMTHVPLLAHPNPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVI 139 (283)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEH
T ss_conf 57777677540477738997748995687479999984278856799994689999999998388631330297159982
Q ss_pred HHHCCCC
Q ss_conf 0000143
Q gi|254780398|r 102 DDALKVD 108 (284)
Q Consensus 102 ~Dal~~d 108 (284)
+|+.++=
T Consensus 140 ~Dg~~fv 146 (283)
T PRK00811 140 GDGVKFV 146 (283)
T ss_pred HHHHHHH
T ss_conf 7899999
No 115
>pfam02636 DUF185 Uncharacterized ACR, COG1565. This family contains several uncharacterized proteins. One member has been described as an ATP synthase beta subunit transcription termination factor rho protein.
Probab=96.71 E-value=0.0071 Score=38.21 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=38.7
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHCC---------CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 997198999879997589882346775023---------525998425543036887875322
Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLG---------ARKVIVIEKDQQFFPILKDISSQH 93 (284)
Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~---------~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284)
.+..+..+.-.|+|+|||.|.|..-+++.- +-+++.||+.+.+....++.+...
T Consensus 10 w~~~g~p~~~~ivE~G~G~G~L~~dil~~l~~~~p~~~~~~~y~lvE~s~~L~~~Q~~~L~~~ 72 (240)
T pfam02636 10 WKALGSPPPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQKERLAGS 72 (240)
T ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 998298997089997997189999999999875946575346999808999999999975214
No 116
>KOG2361 consensus
Probab=96.67 E-value=0.0034 Score=40.20 Aligned_cols=89 Identities=25% Similarity=0.275 Sum_probs=60.5
Q ss_pred HCCCCCCCCC-------CCCCCCCHHHHHHHHH-HCCCCCCC--EEEEECCCCCHHHHHHHHCCCC---EEEEECCCCCC
Q ss_conf 8189843365-------8411239899999999-71989998--7999758988234677502352---59984255430
Q gi|254780398|r 16 HYKIIPKKYM-------GQNFLLDLNILKKIAE-SSGSLDGI--TVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQF 82 (284)
Q Consensus 16 ~~~~~p~k~l-------GQnFL~d~~i~~~iv~-~~~~~~~~--~VlEIGpG~G~LT~~Ll~~~~~---~v~aiEiD~~~ 82 (284)
+|..-|.|.| .-.|..|++.+.+--. .+...... .|||||||-|..+-+|++..+. .|.|.+.-++.
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A 109 (264)
T KOG2361 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 (264)
T ss_pred HHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHH
T ss_conf 66336466645666532454531167787756775075555734511222477751224442489987389974898689
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 3688787532200122000000
Q gi|254780398|r 83 FPILKDISSQHPNRLEIIQDDA 104 (284)
Q Consensus 83 ~~~l~~~~~~~~~~~~ii~~Da 104 (284)
++.+++.-...+.++.....|+
T Consensus 110 i~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361 110 IELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHHHHHCCCCCHHHHCCCCEEC
T ss_conf 9998736332645501200016
No 117
>PRK03612 spermidine synthase; Provisional
Probab=96.50 E-value=0.0052 Score=39.07 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHH--HHH------HHCCCC
Q ss_conf 3989999999971---98999879997589882346775023-52599842554303688787--532------200122
Q gi|254780398|r 31 LDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDI--SSQ------HPNRLE 98 (284)
Q Consensus 31 ~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~--~~~------~~~~~~ 98 (284)
.|+...++..-+. ...+.+.||=||.|.|.--+++++-. -++|+.||+|+..++..++. +.+ .+.|++
T Consensus 274 ~DE~~YhE~LvHp~m~~~~~p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~ 353 (516)
T PRK03612 274 RDEYRYHEALVHPALAASPRARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVT 353 (516)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEE
T ss_conf 64888776340402156999773899837760879998648996637899518899999985721444412323499648
Q ss_pred CCHHHHCCCC
Q ss_conf 0000000143
Q gi|254780398|r 99 IIQDDALKVD 108 (284)
Q Consensus 99 ii~~Dal~~d 108 (284)
++++|+.++=
T Consensus 354 v~~~Da~~~l 363 (516)
T PRK03612 354 VVNDDAFNWL 363 (516)
T ss_pred EEEHHHHHHH
T ss_conf 9853789999
No 118
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.013 Score=36.63 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=56.1
Q ss_pred CCCCC--CCCCCHHHHHHH--------HHHCC---CCCCCEEEEECCCCCHHHHHHHHCC---------CCEEEEECCCC
Q ss_conf 36584--112398999999--------99719---8999879997589882346775023---------52599842554
Q gi|254780398|r 23 KYMGQ--NFLLDLNILKKI--------AESSG---SLDGITVIEIGAGPGNLTQMLLTLG---------ARKVIVIEKDQ 80 (284)
Q Consensus 23 k~lGQ--nFL~d~~i~~~i--------v~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~---------~~~v~aiEiD~ 80 (284)
.++|+ -|.+-+.+-.-. ++... ....-.++|||||.|.|-.-+|+.- +-.+..||..+
T Consensus 40 ~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 40 VKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred HHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHCEEEEEECCH
T ss_conf 11244587452442688999999999999999836899844899679967699999999987597877305599992598
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf 30368878753220012200000001431552133222011202
Q gi|254780398|r 81 QFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284)
++...-++.+...... +.+. .|.+..+...+..||||
T Consensus 120 ~L~~~Qk~~L~~~~~~--~~~~-----~~~e~~p~~~~~i~~~N 156 (370)
T COG1565 120 ELRARQKETLKATEDL--IRWV-----EWVEDLPKKFPGIVVSN 156 (370)
T ss_pred HHHHHHHHHHHCCCCC--HHHH-----HHHHHCCCCCCEEEEEC
T ss_conf 9999999987433211--1667-----66875446675699851
No 119
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=96.46 E-value=0.0065 Score=38.44 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=50.5
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEE
Q ss_conf 98799975898823467750235259984255430368878753220012200000001431552133222011
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRI 121 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~v 121 (284)
....|+.|+|.|-.|+.+|-..+.+|..||-.+.|++.+++.+....+++ +++....+.++.+..+.|-+
T Consensus 56 ~~~alDcGAGIGRVTk~lL~~~f~~VDlVEpv~~Fl~~ak~~l~~~~~~~----~~~~~~gLQdf~P~~~~YD~ 125 (217)
T pfam05891 56 HLVALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEEKKKV----GNFFCVGLQDFTPEEGRYDL 125 (217)
T ss_pred CCEEEECCCCCCEECHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCC----CEEEECCCCCCCCCCCEEEE
T ss_conf 32665426763611266788754813575444999999999874037976----53897361016899981769
No 120
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=96.17 E-value=0.014 Score=36.31 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=47.9
Q ss_pred EEEEECCCCCHHHHHHHHC----CCC-EEEEECCCCCCHHHHHHHH--HHHHCCCCCCHHHHCCCCHHH
Q ss_conf 7999758988234677502----352-5998425543036887875--322001220000000143155
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTL----GAR-KVIVIEKDQQFFPILKDIS--SQHPNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~----~~~-~v~aiEiD~~~~~~l~~~~--~~~~~~~~ii~~Dal~~d~~~ 111 (284)
.|.=+|+|-|-|-+..++. +.+ +|.|||+++..+-.|+... ..=.++|++|++|--.++.+.
T Consensus 189 vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p~ 257 (447)
T pfam05185 189 VILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGPE 257 (447)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCC
T ss_conf 999985896489999999999819966999995687799999998505431780699908000579987
No 121
>KOG2187 consensus
Probab=96.11 E-value=0.019 Score=35.59 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHH----HHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9843365841123989999999----971989998799975898823467750235259984255430368878753220
Q gi|254780398|r 19 IIPKKYMGQNFLLDLNILKKIA----ESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP 94 (284)
Q Consensus 19 ~~p~k~lGQnFL~d~~i~~~iv----~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~ 94 (284)
++.+=|=|-=|=+|..+++..- ++++...+..++++=||+|.+...+++. +++|+.||+++..++.+++....+.
T Consensus 351 ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ng 429 (534)
T KOG2187 351 LTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQING 429 (534)
T ss_pred EEEEECCCHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEHHHHCC-CCCEEEEECCHHHCCHHHHCCHHCC
T ss_conf 689977631411470888999999999708998847998630688400001026-6612102338454443554001158
Q ss_pred -CCCCCCHHHHCCCCHHHHCC--CCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf -01220000000143155213--3222011202322467889999985
Q gi|254780398|r 95 -NRLEIIQDDALKVDFEKFFN--ISSPIRIIANLPYNIGTRLLFNWIS 139 (284)
Q Consensus 95 -~~~~ii~~Dal~~d~~~~~~--~~~~~~vvgNLPYnIss~Il~~ll~ 139 (284)
.+.+.|.|-|.+.=..-+.+ .+..+.+|-+-|=-=-...+.+.+.
T Consensus 430 isNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~ 477 (534)
T KOG2187 430 ISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALR 477 (534)
T ss_pred CCCCEEEECCHHHCCCHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 654024306420015012056788875689978886761099999998
No 122
>KOG1501 consensus
Probab=96.07 E-value=0.0076 Score=38.04 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=46.8
Q ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHH
Q ss_conf 879997589882346775023525998425543036887875322--00122000000
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDA 104 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Da 104 (284)
-.||.||.|+|-|+..-+..++..|+|+|.=..++..+++...++ ..++++|+.--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEEHHHCHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 8999726881089999887357707752122218999999884188765226620366
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.00 E-value=0.018 Score=35.65 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 239899999999719899987999758988234677502352-59984255430368878753220012200000001
Q gi|254780398|r 30 LLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 30 L~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
..|. -.--++..+++.+++.||+..+|+|.=|-.|++.... .|+|+|+++.=++.+++......-+..++.+|+..
T Consensus 229 VQD~-aSql~~~ll~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~ 305 (428)
T PRK10901 229 VQDA-SAQGCVTLLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY 305 (428)
T ss_pred EECH-HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8172-7678998649888987987168876689999996458928999698889999999999759973999776557
No 124
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=95.99 E-value=0.1 Score=31.03 Aligned_cols=110 Identities=15% Similarity=0.297 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89843365841123989999999971--9899987999758988234677502--3525998425543036887875322
Q gi|254780398|r 18 KIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93 (284)
Q Consensus 18 ~~~p~k~lGQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284)
+-.|...+-|-|-+-+..+.|.+=.. +...|..||=+| ..-||.--+.. .++.|+.++||++++.+.++...+.
T Consensus 13 RP~~~~~~DQ~~~T~ET~v~Ra~l~~~rgdL~Gk~iL~vG--DDDLtSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~ 90 (243)
T pfam01861 13 RPEPIHEYDQGFVTPETTVARVALMYSRGDLEGKEILVLG--DDDLTSLAAALTGLPKRIAVVDIDERLIKFIERVAKEE 90 (243)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 9987310455631628899999999873885798799972--86187899996489854899967589999999999974
Q ss_pred HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 00122000000014315521332220112023224678
Q gi|254780398|r 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284)
Q Consensus 94 ~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284)
.-+++.++.|. +..+++-... .--.++-..||.+..
T Consensus 91 gl~i~~~~~Dl-R~pLP~~l~~-~FD~f~TDPPyT~~G 126 (243)
T pfam01861 91 GLKIEAFVHDL-RNPLPEDLKH-KFDVFITDPPETVDG 126 (243)
T ss_pred CCCEEEEEECC-CCCCCHHHHC-CCCEEECCCCCCHHH
T ss_conf 99716887410-1489999961-679897189987789
No 125
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=95.95 E-value=0.024 Score=34.94 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 36584112398999999997198-----99987999758988234677502352599842554303688787
Q gi|254780398|r 23 KYMGQNFLLDLNILKKIAESSGS-----LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 23 k~lGQnFL~d~~i~~~iv~~~~~-----~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
=..|.=|..++.-..+.....+. .+...+|+||+|.|..|..++... ++|.|-|.-..|...|+++
T Consensus 65 LgRGsMfV~S~~Q~~~LL~~~~~~~~~~~~~~~LLDlGAGdG~VT~~la~~F-~~V~aTE~S~~Mr~rL~~r 135 (265)
T pfam05219 65 LGRGSMFIFSEEQFRKLLVIGGFQPASGQEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK 135 (265)
T ss_pred HCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH-CEEEEEECCHHHHHHHHHC
T ss_conf 4577658844999999972437678888776647883589978999999752-3588872789999999975
No 126
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.94 E-value=0.0023 Score=41.22 Aligned_cols=83 Identities=17% Similarity=0.301 Sum_probs=55.9
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99981898433658411239899999999719899987999758988234677502352599842554303688787532
Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 (284)
Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~ 92 (284)
.-++|++.|-+| .+++++...+.-.+|++|||.|-=+..|+..|. .|+|+++++..+..|++....
T Consensus 101 f~KKY~lt~tHS-------------ev~~a~~~i~pgkaLDLGCG~GRNsLyLa~~Gf-dVTA~D~N~~sl~~L~~ia~~ 166 (289)
T PRK12335 101 FHKKYNLTPTHS-------------EVLEAAKTVKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQASLENLQQIAEK 166 (289)
T ss_pred HHHHCCCCCCCH-------------HHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCC-CEEEEECCHHHHHHHHHHHHH
T ss_conf 786338998619-------------999987526887466604788822788975798-425886899999999999997
Q ss_pred HHCCCCCCHHHHCCCCH
Q ss_conf 20012200000001431
Q gi|254780398|r 93 HPNRLEIIQDDALKVDF 109 (284)
Q Consensus 93 ~~~~~~ii~~Dal~~d~ 109 (284)
..=+++....|....++
T Consensus 167 E~L~i~~~~yDIN~a~l 183 (289)
T PRK12335 167 ENLNIRAGSYDINSASL 183 (289)
T ss_pred CCCCCCCEEECCCCCCC
T ss_conf 19887725751666666
No 127
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.90 E-value=0.066 Score=32.20 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHH-HHHHHHC-CCCCCHHHHCC-CCHHHHCCCCCCE-
Q ss_conf 99987999758988234677502--35259984255430368878-7532200-12200000001-4315521332220-
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKD-ISSQHPN-RLEIIQDDALK-VDFEKFFNISSPI- 119 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~-~~~~~~~-~~~ii~~Dal~-~d~~~~~~~~~~~- 119 (284)
.++..++|.|+|.+.=|+.|+.. .+...++|+|...+.....+ ....+|+ .++-++||+.+ ++++.........
T Consensus 62 ~~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~~p~l~v~~v~~dy~~~l~~~~~~~~~~rl~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECHHCHHHCCCCCCCCCCEE
T ss_conf 76764773178862378999998621563887756899999999999977899768999633315744566557887589
Q ss_pred ----EEEECCCHHHHHHHHHHHHHH
Q ss_conf ----112023224678899999852
Q gi|254780398|r 120 ----RIIANLPYNIGTRLLFNWISA 140 (284)
Q Consensus 120 ----~vvgNLPYnIss~Il~~ll~~ 140 (284)
--|||.+=.=+..+|.++-..
T Consensus 142 ~flGSsIGNf~~~ea~~fL~~~~~~ 166 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQL 166 (301)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9707544789989999999999997
No 128
>KOG2730 consensus
Probab=95.85 E-value=0.0056 Score=38.83 Aligned_cols=169 Identities=21% Similarity=0.217 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHH
Q ss_conf 841123989999999971989-9987999758988234677502352599842554303688787532--2001220000
Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSL-DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQD 102 (284)
Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~-~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~ 102 (284)
||--..-+.++.-|+...... ..+.|+..=+|-|.=|..-+.++| .|++||+|+.-+..++++.+- -++++++|+|
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G 150 (263)
T KOG2730 72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICG 150 (263)
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCC-EEEEEECCHHHHHHHHCCCEEECCCCEEEEEEC
T ss_conf 5477251899999987888733743002545368842889987188-079985267888877606503257750588833
Q ss_pred HHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 00014315521332220112023224678899999852010000001102033447887530123123323454320133
Q gi|254780398|r 103 DALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRT 182 (284)
Q Consensus 103 Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~ 182 (284)
|+|+. .+| +....- ...+++| -.++|-+.|.+-++.-=-
T Consensus 151 D~ld~---------------------~~~------lq~~K~---~~~~vf~---------sppwggp~y~~~~~~DL~-- 189 (263)
T KOG2730 151 DFLDL---------------------ASK------LKADKI---KYDCVFL---------SPPWGGPSYLRADVYDLE-- 189 (263)
T ss_pred HHHHH---------------------HHH------HHHHHH---EEEEEEC---------CCCCCCCCHHHHHHHHHH--
T ss_conf 09999---------------------998------864101---0456616---------999999631332031020--
Q ss_pred CEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCCC------HHHHHHHHHHHHCCCCHHHH
Q ss_conf 201200011000010578757887301258855347------67899999999727313899
Q gi|254780398|r 183 KATMMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCC------LESLKKITQEAFGKRRKTLR 238 (284)
Q Consensus 183 ~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~------~~~~~~~~~~~F~~RRK~l~ 238 (284)
...+.+.-..|.-.|+|---|..+.|+......- ...+..+.+..+.+.-|++.
T Consensus 190 --~~~~p~~~~~fk~s~kispnv~~flprntdv~qls~~~~~~~~~~~i~~~~~n~~~k~i~ 249 (263)
T KOG2730 190 --THLKPMGTKIFKSSLKISPNVAYFLPRNTDVNQLARLARKVLGKCEIEQVKLNGYMKTIT 249 (263)
T ss_pred --HHCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf --105514899987655307444440874005899998657544559999999851134443
No 129
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.80 E-value=0.033 Score=34.09 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=110.8
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH---HHHCCC--CEEEEECCCCCCHHHH
Q ss_conf 99998189843365841123989999999971989998799975898823467---750235--2599842554303688
Q gi|254780398|r 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQM---LLTLGA--RKVIVIEKDQQFFPIL 86 (284)
Q Consensus 12 ~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~---Ll~~~~--~~v~aiEiD~~~~~~l 86 (284)
.+++++.-...|+-||.| +-..+++-||+.+.+.+.+.|+.--||.|.+-.. .+.+.. ..+...|++..-+...
T Consensus 152 ~ll~~fa~~~~k~~GEfy-TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 152 YLLRKFAEAEGKEAGEFY-TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLA 230 (489)
T ss_pred HHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHH
T ss_conf 999998886275578605-8799999999975776565234733540379999999997515550499895668899999
Q ss_pred HHHHHHH--HCCCCCCHHHHCCCCHHHHCCCCCCE-EEEECCCHHHHH-H-HHHHHH------HHHCCCCCCCHHHHEEE
Q ss_conf 7875322--00122000000014315521332220-112023224678-8-999998------52010000001102033
Q gi|254780398|r 87 KDISSQH--PNRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGT-R-LLFNWI------SADTWPPFWESLTLLFQ 155 (284)
Q Consensus 87 ~~~~~~~--~~~~~ii~~Dal~~d~~~~~~~~~~~-~vvgNLPYnIss-~-Il~~ll------~~~~~~~~~~~~vlmvQ 155 (284)
+-.+--+ ...+.+.++|-+.-++..-.....++ .|++|.||+.+. . ...... .....++ -..+-+.+.
T Consensus 231 ~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~-~~~~d~afi 309 (489)
T COG0286 231 KMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPT-KNSADLAFL 309 (489)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC-CCHHHHHHH
T ss_conf 9611662787422343344236873323466555016865799554443443310024320002577888-952789999
Q ss_pred HHHHHHHH--------HCCCHHHHH-----HHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCC
Q ss_conf 44788753--------012312332-----34543201332012000110000105787578873012588
Q gi|254780398|r 156 KEVGERIT--------AQKNSPHYG-----RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPHLN 213 (284)
Q Consensus 156 kEvA~Rl~--------a~pg~k~Yg-----~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk~~ 213 (284)
.....++. -+.|.--.| .-.-++. -..++-+...|.+.|++- .+..+++-+.+.+.
T Consensus 310 ~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~-~~~~~~ii~lp~~lF~~t-gi~~~Il~l~k~k~ 378 (489)
T COG0286 310 QHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE-DNLLEAIIGLPTGLFYNT-GIPTNILFLTKNKP 378 (489)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH-HHHHEEEEECCCCCCCCC-CCCCEEEEEECCCC
T ss_conf 9999971867705899258866277722579999875-031335342686420357-77608999615887
No 130
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.80 E-value=0.027 Score=34.57 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=49.0
Q ss_pred CCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCH
Q ss_conf 98799975898823467750235-259984255430368878753220-012200000001431
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDF 109 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~ 109 (284)
++.+++||.|.|.-...|+=..+ .+|+.+|-..+=+..|++...+.. ++++++++.|-++.-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~ 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ 131 (215)
T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCC
T ss_conf 8879985799997317688856688189971675079999999998599974986312766014
No 131
>PRK01581 speE spermidine synthase; Validated
Probab=95.80 E-value=0.013 Score=36.56 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHH--HHH-----H-HCCCCCCHHHHCCCCHHHHCCCC
Q ss_conf 99987999758988234677502352-599842554303688787--532-----2-00122000000014315521332
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDI--SSQ-----H-PNRLEIIQDDALKVDFEKFFNIS 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~--~~~-----~-~~~~~ii~~Dal~~d~~~~~~~~ 116 (284)
...+.||=+|.|.|.--+++|+-... +|+.||.|+.+.+..+.. +.. + +.+++++++||.++- .- ...
T Consensus 138 ~~~~rVLILGGGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL--~~-~~~ 214 (363)
T PRK01581 138 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFL--SS-PSS 214 (363)
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHH--HC-CCC
T ss_conf 887738998076439999987179856278995699999987519799875120014980499921089998--61-675
Q ss_pred CCEEEEECCCH
Q ss_conf 22011202322
Q gi|254780398|r 117 SPIRIIANLPY 127 (284)
Q Consensus 117 ~~~~vvgNLPY 127 (284)
.--.||.-+|=
T Consensus 215 ~FDvIIVDlPD 225 (363)
T PRK01581 215 LYDVIIIDFPD 225 (363)
T ss_pred CCCEEEEECCC
T ss_conf 44289995899
No 132
>KOG2899 consensus
Probab=95.71 E-value=0.013 Score=36.55 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=40.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99987999758988234677502-3525998425543036887875322
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDISSQH 93 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284)
....-+|+|||..|.||..|++. +++.|.+++||++++..+++.....
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC
T ss_conf 4762057506775465899998606433467615689999999735660
No 133
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=95.64 E-value=0.03 Score=34.32 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=73.4
Q ss_pred HCCCCCCCCCCCCCCCCHHHHH--HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8189843365841123989999--99997198999879997589882346775023525998425543036887875322
Q gi|254780398|r 16 HYKIIPKKYMGQNFLLDLNILK--KIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH 93 (284)
Q Consensus 16 ~~~~~p~k~lGQnFL~d~~i~~--~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284)
.-+.||-+. .|=+.+=+ -+...+ .+-.+||+=+|.|+|.-+-|.|+|+++++||.|...+..+.++++.+
T Consensus 30 ~~~tRPT~d-----~VREslFNiv~~~~~i---~~~~~LD~FAGsG~LG~EALSRgA~~~~f~E~d~~~~~~l~~N~~~L 101 (210)
T TIGR00095 30 GSSTRPTTD-----RVRESLFNIVILRPEI---VGAHFLDLFAGSGSLGLEALSRGAKSAVFVEQDKKVAQTLKENLSTL 101 (210)
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHHH---CCCEEEEEECCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 897445641-----2456787699998763---68727885406446537664014162378736867999999999998
Q ss_pred HCC-------CCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 001-------22000000014315521332220112023224678
Q gi|254780398|r 94 PNR-------LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284)
Q Consensus 94 ~~~-------~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284)
.|+ -++++++.+.++.....+...--.|.--.||+-..
T Consensus 102 ~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~~d~iylDPPf~~~~ 146 (210)
T TIGR00095 102 KNRLKLSGEQATVLNDAERALLFLAKKQTSPFDIIYLDPPFNTGL 146 (210)
T ss_pred HHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 887158530000000256665776517996114787148888761
No 134
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=95.58 E-value=0.016 Score=36.01 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCC-CCHHHHHHHHH----HHHCCCC--CCHHHHC-CCCHHHHCCC
Q ss_conf 99987999758988234677502352599842554-30368878753----2200122--0000000-1431552133
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQ-QFFPILKDISS----QHPNRLE--IIQDDAL-KVDFEKFFNI 115 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~-~~~~~l~~~~~----~~~~~~~--ii~~Dal-~~d~~~~~~~ 115 (284)
..+..+|++|.=+|..|..++++||++|++||.-. .+..-|++--. +-+| +. +...|+. ...||++.-.
T Consensus 76 vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N-~rGy~T~~d~~~~qP~P~lA~~ 152 (240)
T TIGR00478 76 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTN-IRGYVTPADIVKDQPMPDLAVV 152 (240)
T ss_pred ECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEEECCC-CCCCCCHHHHHCCCCCCCHHHH
T ss_conf 3786899705673048999987058467778603213343236366268964578-7444665654078889731444
No 135
>KOG1663 consensus
Probab=95.55 E-value=0.022 Score=35.18 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECC--CCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH--HHHHHCCCCCCHH
Q ss_conf 411239899999999719899987999758--988234677502352599842554303688787--5322001220000
Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGA--GPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI--SSQHPNRLEIIQD 102 (284)
Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGp--G~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~--~~~~~~~~~ii~~ 102 (284)
=+..+-+....-+...+.....+..||||. |-++|+-+++--.-.+|+++|+|+..++...+. +.+..+++++++|
T Consensus 53 ~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g 132 (237)
T KOG1663 53 SEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG 132 (237)
T ss_pred CCEECCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 00423768879999999985873389981212789999997459996599996186888875999986063303423425
Q ss_pred HHCCCCHHHH
Q ss_conf 0001431552
Q gi|254780398|r 103 DALKVDFEKF 112 (284)
Q Consensus 103 Dal~~d~~~~ 112 (284)
++++. ++++
T Consensus 133 ~a~es-Ld~l 141 (237)
T KOG1663 133 PALES-LDEL 141 (237)
T ss_pred CHHHH-HHHH
T ss_conf 25666-9999
No 136
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.51 E-value=0.051 Score=32.87 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHC
Q ss_conf 12398999999997198999879997589882346775023525998425543036887875322---001220000000
Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDAL 105 (284)
Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal 105 (284)
|-.|.+..++.+.-. ..|+.||.+=+=+|+-|-..+..||++|+.|+.+.+..+.+++++.-+ ..+..++++|++
T Consensus 201 fFlDqR~~R~~l~~~--~~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGEL--AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred EEHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHH
T ss_conf 528767999998613--168767886466769999998669971489826578999999999862997101056722399
Q ss_pred CCCHHHHCCCCCCEE-EEECCCH
Q ss_conf 143155213322201-1202322
Q gi|254780398|r 106 KVDFEKFFNISSPIR-IIANLPY 127 (284)
Q Consensus 106 ~~d~~~~~~~~~~~~-vvgNLPY 127 (284)
++ +......+.+|- ||-..|=
T Consensus 279 ~~-l~~~~~~g~~fDlIilDPPs 300 (393)
T COG1092 279 KW-LRKAERRGEKFDLIILDPPS 300 (393)
T ss_pred HH-HHHHHHCCCCCCEEEECCCC
T ss_conf 99-99998559955689978810
No 137
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.43 E-value=0.03 Score=34.35 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=52.9
Q ss_pred CCCCCCC-HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 8411239-899999999719899987999758988234677502352-59984255430368878753220012200000
Q gi|254780398|r 26 GQNFLLD-LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDD 103 (284)
Q Consensus 26 GQnFL~d-~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~D 103 (284)
|++++.. -+.-.++.+.+. +-..++|+||+.|.=-.+|=...|. .+.||||....++.+++.... .++.+|.
T Consensus 23 ~~~~~~sn~~~f~~~l~~~~--~ikSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~lk~~~~~----~~i~n~S 96 (204)
T TIGR03587 23 RQSLVAAKLAMFARALNRLP--KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN----INIIQGS 96 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC----CEEEECC
T ss_conf 34778889999999983578--88826896688477699998748744049995399999999865897----2699653
Q ss_pred HCCCCHHH
Q ss_conf 00143155
Q gi|254780398|r 104 ALKVDFEK 111 (284)
Q Consensus 104 al~~d~~~ 111 (284)
+++.....
T Consensus 97 Ild~~~~~ 104 (204)
T TIGR03587 97 LFDPFKDN 104 (204)
T ss_pred CCCCCCCC
T ss_conf 34667787
No 138
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=95.41 E-value=0.065 Score=32.24 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=66.8
Q ss_pred HHHHH-CCCCCCC-CCCCCCCCC-----HHHHHHHHHHCC-----CCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEC
Q ss_conf 99998-1898433-658411239-----899999999719-----899987999758988234677502--352599842
Q gi|254780398|r 12 TILSH-YKIIPKK-YMGQNFLLD-----LNILKKIAESSG-----SLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIE 77 (284)
Q Consensus 12 ~ll~~-~~~~p~k-~lGQnFL~d-----~~i~~~iv~~~~-----~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiE 77 (284)
.||+. |++. - .+-.++|+= -+-++.+.+.+. ...+-.+|+||.|.-.+ .+|+-. ...+.+|.|
T Consensus 20 aLL~~~ygl~--~wdiP~~~LcP~iP~R~nYIh~l~DLL~~~~~~~~~~v~gLDIGtGAscI-YPLLg~~~y~W~fvgtD 96 (254)
T pfam05971 20 ALLREFYGVS--IWDIPDGFLCPPVPGRADYIHWVADLLGHQDSDIPTLRRALDIGTGANCI-YPLLGVTEYGWRFVGSE 96 (254)
T ss_pred HHHHHHCCCC--EEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH-HHHHCCCCCCCEEEEEE
T ss_conf 9999865987--40079888389998688999999999754278877774677733664157-77540400486379762
Q ss_pred CCCCCHHHHHHHHHHHH---CCCCCCHHHHCCCCHHHHCCCCCC-EEEEECCCHHHHHHH
Q ss_conf 55430368878753220---012200000001431552133222-011202322467889
Q gi|254780398|r 78 KDQQFFPILKDISSQHP---NRLEIIQDDALKVDFEKFFNISSP-IRIIANLPYNIGTRL 133 (284)
Q Consensus 78 iD~~~~~~l~~~~~~~~---~~~~ii~~Dal~~d~~~~~~~~~~-~~vvgNLPYnIss~I 133 (284)
+|+..++.+++....++ +++++.+..--..=+......+.. -..+-|.||+-|..=
T Consensus 97 Id~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~~if~gii~~~e~fdftmCNPPF~~S~~e 156 (254)
T pfam05971 97 VDPQSLNSAKAIVEANPNLSDAIELRRQPQSTLIFNGLIGENERYDFTLCNPPFHASLAE 156 (254)
T ss_pred CCHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHH
T ss_conf 798999999999985833231169996378110223446876606663037986678888
No 139
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=95.39 E-value=0.026 Score=34.75 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=42.0
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 999999971989998799975898823467750235259984255430368
Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI 85 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~ 85 (284)
-=+++..++...++..|++||||.|.-.-.++..+|+.|+.+|--.-++-.
T Consensus 103 KW~Rl~~~i~~L~gk~VlDVGcgNGYy~~RMlg~ga~~viGiDPs~lf~~Q 153 (315)
T pfam08003 103 KWDRVLPHLSPLKGRTILDVGCGNGYHMWRMLGEGAALVVGIDPSELFLCQ 153 (315)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 299887342242689887517786499998622399879988981999999
No 140
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=94.93 E-value=0.045 Score=33.21 Aligned_cols=101 Identities=15% Similarity=0.342 Sum_probs=69.8
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCC
Q ss_conf 99999719899987999758988234677502352599842554303688787532200122000000014315521332
Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS 116 (284)
Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~ 116 (284)
-.|++++.+-..-.+|+.|||.|-=+.+|...|. -|.|++..+.-+..+.+..+.. ++.-++.++.++|--.+ +
T Consensus 63 s~v~eAvk~v~PcKtLDLGCGqGrNsLyLsl~GY-DV~awD~n~~siA~v~~~k~~E--nL~nl~t~~yDiNaa~~---~ 136 (239)
T TIGR00477 63 SEVLEAVKVVKPCKTLDLGCGQGRNSLYLSLAGY-DVDAWDHNEASIASVEEIKEKE--NLDNLRTDVYDINAAAL---D 136 (239)
T ss_pred HHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCC-CCEEECCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHC---C
T ss_conf 7777555023798653268888537899976168-4101216866887599888762--67110046554335540---1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 2201120232246788999998520100000011
Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISADTWPPFWESL 150 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~ 150 (284)
..|-+| +|| +++-+|....-|..+..|
T Consensus 137 e~YDFI------~sT-VVf~FL~a~rvP~iIanM 163 (239)
T TIGR00477 137 EDYDFI------LST-VVFMFLEAERVPEIIANM 163 (239)
T ss_pred CCCCEE------EEE-HHHHHHCCCCCHHHHHHH
T ss_conf 278742------102-012210588772678865
No 141
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=94.87 E-value=0.13 Score=30.35 Aligned_cols=53 Identities=26% Similarity=0.517 Sum_probs=39.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9998799975898823467750235-25998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.++..|+++|++||+-|..++++++ ..|++|++-+. .. ...+..++||+...+
T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~---------~~-~~~~~~i~gDi~~~~ 73 (176)
T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM---------KP-IQGVTFLRGDITDPE 73 (176)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC---------CC-CCCCEEECCCCCCHH
T ss_conf 7999999968999769999998566873999973446---------56-778456516766878
No 142
>KOG1271 consensus
Probab=94.81 E-value=0.023 Score=35.03 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=47.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCC
Q ss_conf 9987999758988234677502352-59984255430368878753--22001220000000143
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVD 108 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d 108 (284)
..+.||+.|+|.|.+-..|++.+-. +++.|+.-+..++.++.+.. +++|.++.-+.|+.+=+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~ 131 (227)
T KOG1271 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD 131 (227)
T ss_pred CCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 43211661579618899988713888864531578899999878875278853168873225775
No 143
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=94.78 E-value=0.026 Score=34.67 Aligned_cols=165 Identities=17% Similarity=0.274 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHCCCC---CCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH-----HH-CCCCCC
Q ss_conf 3989999999971989---99879997589882346775023-52599842554303688787532-----20-012200
Q gi|254780398|r 31 LDLNILKKIAESSGSL---DGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQ-----HP-NRLEII 100 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~---~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~-----~~-~~~~ii 100 (284)
.|+=+-+.|+.++.+. +.++||=||-|-|+.-|+.++-. -..++.||||..-++.-|+-+.. ++ .||++.
T Consensus 56 ~DEF~YhEMi~HvpL~~H~NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~ 135 (284)
T TIGR00417 56 RDEFIYHEMIAHVPLFAHPNPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLA 135 (284)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEE
T ss_conf 54435678998756536898854789963888468788755981679999727478999888261210566588803589
Q ss_pred HHHHCCCCHHHH--CCCCCCEEEE---ECCCHHHHHHH----HHHHHHHHCCCCCCCHHHHEEE-HHHHHHHHHCCCHHH
Q ss_conf 000001431552--1332220112---02322467889----9999852010000001102033-447887530123123
Q gi|254780398|r 101 QDDALKVDFEKF--FNISSPIRII---ANLPYNIGTRL----LFNWISADTWPPFWESLTLLFQ-KEVGERITAQKNSPH 170 (284)
Q Consensus 101 ~~Dal~~d~~~~--~~~~~~~~vv---gNLPYnIss~I----l~~ll~~~~~~~~~~~~vlmvQ-kEvA~Rl~a~pg~k~ 170 (284)
-+|-.++= .+. .+.+..|-|| +-=|=.-+--+ .+.++.....+ ..|+..| -| +.-
T Consensus 136 i~DG~~fl-~~~Gasdv~~~fDVIIvDstDPvGPa~~LF~~~Fy~~~~~aL~~----~Gv~v~Qss~----------s~~ 200 (284)
T TIGR00417 136 IDDGFKFL-RDTGASDVEKKFDVIIVDSTDPVGPAETLFTKEFYELLKKALNE----DGVIVAQSSE----------SPW 200 (284)
T ss_pred ECCCHHHH-HHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCC----------CCC
T ss_conf 82517989-76152222121447997277895655410217999999985299----9889980278----------843
Q ss_pred HHHHHHHHCCCCCEEEE-CCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 32345432013320120-001100001057875788730125
Q gi|254780398|r 171 YGRLSVLTGWRTKATMM-FDISPHVFFPSPKVTSTVIHFIPH 211 (284)
Q Consensus 171 Yg~LSv~~q~~~~v~~~-~~V~~~~F~P~PkVdS~vi~l~pk 211 (284)
+ .+-.+....-.++-+ |.+-.-++.+.|-=-|+++.|+--
T Consensus 201 ~-~~~~~~d~~r~~~~~~F~~~~~y~~~iPTYp~G~~~F~~~ 241 (284)
T TIGR00417 201 L-QLELIKDLKRKVKEVPFPITEYYTAAIPTYPSGLWSFIIA 241 (284)
T ss_pred C-CHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHC
T ss_conf 2-7488887888775268975304664078650235453220
No 144
>KOG1975 consensus
Probab=94.72 E-value=0.05 Score=32.92 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=57.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------CCCCHHHHCCCCHHHHCCCCCC
Q ss_conf 999879997589882346775023525998425543036887875322001-------2200000001431552133222
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-------LEIIQDDALKVDFEKFFNISSP 118 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~-------~~ii~~Dal~~d~~~~~~~~~~ 118 (284)
.+++.+++.|||.|.=-..--+.+..++++++|-..-++.+++.+....++ ..++.||-....+.+......|
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred CCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCC
T ss_conf 12230000056776207676551456357653434009999999999986664136516999714416689874257898
Q ss_pred -EEEEE
Q ss_conf -01120
Q gi|254780398|r 119 -IRIIA 123 (284)
Q Consensus 119 -~~vvg 123 (284)
+-||+
T Consensus 196 ~fDivS 201 (389)
T KOG1975 196 RFDIVS 201 (389)
T ss_pred CCCEEE
T ss_conf 855565
No 145
>KOG4300 consensus
Probab=94.67 E-value=0.069 Score=32.06 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=69.1
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCC-CCHHHHCCCCHHHHCCCCCCE
Q ss_conf 71989998799975898823467750235259984255430368878753220-0122-000000014315521332220
Q gi|254780398|r 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLE-IIQDDALKVDFEKFFNISSPI 119 (284)
Q Consensus 42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~-ii~~Dal~~d~~~~~~~~~~~ 119 (284)
.++....-.|||||+|+|+=-...--..-..|+++|-.+.|-+++.+.+.+.. -+++ .+.+|.-.+ +++.+.+- -
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l--~~l~d~s~-D 147 (252)
T KOG4300 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL--PQLADGSY-D 147 (252)
T ss_pred HHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCC--CCCCCCCE-E
T ss_conf 73435751369961468888535557888568986784879999998886425720577785052107--42136771-1
Q ss_pred EEEECCCH-HHHH--HHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
Q ss_conf 11202322-4678--89999985201000000110203344788753012312332345432013320
Q gi|254780398|r 120 RIIANLPY-NIGT--RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKA 184 (284)
Q Consensus 120 ~vvgNLPY-nIss--~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v 184 (284)
.||+-+=- +... +.|..+ .+-..|.+ ..+| + ..+...||.+.-+.|..+++
T Consensus 148 tVV~TlvLCSve~~~k~L~e~-~rlLRpgG--~iif-i----------EHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300 148 TVVCTLVLCSVEDPVKQLNEV-RRLLRPGG--RIIF-I----------EHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred EEEEEEEEECCCCHHHHHHHH-HHHCCCCC--EEEE-E----------ECCCCCCHHHHHHHHHHHCH
T ss_conf 577788872057799999998-87508895--8999-7----------21244210899999987455
No 146
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=94.57 E-value=0.15 Score=30.00 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHC-CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----------CCC
Q ss_conf 989999999971-98999879997589882346775023525998425543036887875322001-----------220
Q gi|254780398|r 32 DLNILKKIAESS-GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR-----------LEI 99 (284)
Q Consensus 32 d~~i~~~iv~~~-~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~-----------~~i 99 (284)
=..+|.+.+..+ ...++..||++|||.|.=-..-...+...+++++++..-+..+++.+.....+ ...
T Consensus 47 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f 126 (327)
T pfam03291 47 KSLLISLYASKTFQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFIAEF 126 (327)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 99999999887514688987998368664457889747986899966899999999999998642114444566750012
Q ss_pred CHHHHCCCCHHHH
Q ss_conf 0000001431552
Q gi|254780398|r 100 IQDDALKVDFEKF 112 (284)
Q Consensus 100 i~~Dal~~d~~~~ 112 (284)
+.+|.....+.+.
T Consensus 127 ~~~D~~~~~l~~~ 139 (327)
T pfam03291 127 ITGDCFVSSVREV 139 (327)
T ss_pred EECCCCHHHHHHH
T ss_conf 3156215678775
No 147
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=94.54 E-value=0.084 Score=31.53 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=52.6
Q ss_pred EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCH
Q ss_conf 799975898823467750235259984255430368878753220012200000001431552133222011202322
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPY 127 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPY 127 (284)
+|+|.=+|.|.++..+-+.+...+.|+|+|+..++..+.++.. .+.+|+.+++..++.+ .-.++|-.|-
T Consensus 2 ~vidlF~G~GG~s~G~~~aG~~~~~a~e~d~~a~~ty~~N~~~------~~~~Di~~~~~~~~~~---~Dvl~ggpPC 70 (319)
T pfam00145 2 KFIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFPK------VPIGDITLIDIKDIPD---IDILTGGFPC 70 (319)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCCCCCCHHHCCC---CCEEEECCCC
T ss_conf 5899780707899999987992999983899999999987799------9617754088747888---6889868999
No 148
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.40 E-value=0.059 Score=32.48 Aligned_cols=62 Identities=18% Similarity=0.377 Sum_probs=48.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHH--HHHH-----H-HCCCCCCHHHHCCC
Q ss_conf 999879997589882346775023-5259984255430368878--7532-----2-00122000000014
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKD--ISSQ-----H-PNRLEIIQDDALKV 107 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~--~~~~-----~-~~~~~ii~~Dal~~ 107 (284)
.....||=+|.|.|---++|++.. ..+++.||.|+++++..++ .+.. + +-+++++++||.++
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w 358 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW 358 (508)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
T ss_conf 66426999728751879999718885527897438899987300267666036776687569996547889
No 149
>PRK00536 speE spermidine synthase; Provisional
Probab=94.39 E-value=0.11 Score=30.86 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCC--------HHHHHHHHHHCCC---CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 433658411239--------8999999997198---99987999758988234677502352599842554303688787
Q gi|254780398|r 21 PKKYMGQNFLLD--------LNILKKIAESSGS---LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 21 p~k~lGQnFL~d--------~~i~~~iv~~~~~---~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
-.+.+|.=+++| +-+-+.|+.++.. .+.++||=||.|.|..-+++++-. .+++.||||+..++..++-
T Consensus 35 et~~fGkvlvLDG~i~t~~~ef~YhEMl~Hvpl~~Hp~Pk~VLIIGGGDGG~~REvlKH~-~~v~~VEID~~Vv~~sk~y 113 (262)
T PRK00536 35 KSKDFGEIAMLNKQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISF 113 (262)
T ss_pred ECCCCCEEEEEECEEEEECHHHHHHHHHHCHHHHCCCCCCEEEEECCCCHHHHHHHHCCC-CEEEEEEECHHHHHHHHHH
T ss_conf 744633179980638986006788888753023218997879998687559999987289-7669999678999999997
Q ss_pred HHHH
Q ss_conf 5322
Q gi|254780398|r 90 SSQH 93 (284)
Q Consensus 90 ~~~~ 93 (284)
+...
T Consensus 114 lP~~ 117 (262)
T PRK00536 114 FPHF 117 (262)
T ss_pred CHHH
T ss_conf 8565
No 150
>KOG3010 consensus
Probab=94.36 E-value=0.044 Score=33.26 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHCCCCCCC-EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 971989998-799975898823467750235259984255430368878753
Q gi|254780398|r 41 ESSGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 41 ~~~~~~~~~-~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~ 91 (284)
+.+...++. ..+|+|+|+|.-++.++.. .++|+|+++.+.+.+.+++...
T Consensus 26 ~ia~~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010 26 KIASRTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHEEECCCHHHHHHHHCCCC
T ss_conf 99842888645888456887114788875-4343130687999998611898
No 151
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.33 E-value=0.084 Score=31.52 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=54.5
Q ss_pred EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH
Q ss_conf 7999758988234677502352599842554303688787532200122000000014315521332220112023224
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn 128 (284)
.|+|.=+|.|.++..+-+.+...+.|+|+|+..++.++.++.. .++++|+.+++..++. +..-.++|-.|-+
T Consensus 2 ~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~-----~~~~~Di~~~~~~~~~--~~vDll~ggpPCQ 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKDFI--PDIDLLTGGFPCQ 73 (275)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-----CCCCCCHHHCCCCCCC--CCCCEEEECCCCC
T ss_conf 5999767807899999986998999996899999999988799-----9525886446532137--8878898689998
No 152
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=94.32 E-value=0.069 Score=32.07 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 89998799975898823467750235-2599842554303688787532
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQ 92 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~ 92 (284)
..++..|||+|+|+|.....++..++ ..|++-+.+ ...+.++++...
T Consensus 42 ~~~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~~-~~l~~l~~Nv~~ 89 (171)
T pfam10294 42 NLSGKNVLELGSGCGLVGIAVALLLPGASVTITDLE-EAIELMKKNIEL 89 (171)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCH-HHHHHHHHHHHH
T ss_conf 406876787056657589999985798589963837-899999999997
No 153
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=94.25 E-value=0.11 Score=30.91 Aligned_cols=69 Identities=26% Similarity=0.400 Sum_probs=54.3
Q ss_pred HHHHHCCCCCCC--EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----------HHCCCCCCHHHHC
Q ss_conf 999971989998--7999758988234677502352599842554303688787532----------2001220000000
Q gi|254780398|r 38 KIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ----------HPNRLEIIQDDAL 105 (284)
Q Consensus 38 ~iv~~~~~~~~~--~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~----------~~~~~~ii~~Dal 105 (284)
-+.+.+++..+. .|++--+|.|.=+--|+..|| +|+++|..+-++..|++-+.. ...++++++||+.
T Consensus 64 ~l~KAvG~k~~~~p~VlDATAGLG~DafiLAsLG~-~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~ 142 (235)
T pfam04445 64 AIAKAVGIKGGYLPTVLDATAGLGRDAFVLASLGC-RVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSA 142 (235)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHH
T ss_conf 89998667889998389878775788999981899-69999788999999999999987481557999962899838879
Q ss_pred CC
Q ss_conf 14
Q gi|254780398|r 106 KV 107 (284)
Q Consensus 106 ~~ 107 (284)
++
T Consensus 143 ~~ 144 (235)
T pfam04445 143 DQ 144 (235)
T ss_pred HH
T ss_conf 99
No 154
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=94.18 E-value=0.078 Score=31.74 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=39.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCC-CC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 8999879997589882346775023-52-5998425543036887875322001220000000143
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLG-AR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+.+++.|||+|+.||+-|+.++++- .. .|++|++-+-- ... ++++++||+.+-.
T Consensus 49 ~~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~---------pi~-gv~~i~gDi~~~~ 104 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------PIV-GVDFLQGDFRDEL 104 (209)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC---------CCC-CCEEECCCCCCHH
T ss_conf 5789989980689975789999973999739998653045---------378-9676403445889
No 155
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=94.16 E-value=0.13 Score=30.43 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCCHHHHHHH---HHHCCCCCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEECCCCCCHHHHHHHHHHHHC-CCCCCHHH
Q ss_conf 2398999999---99719899987999758988234677502-35-2599842554303688787532200-12200000
Q gi|254780398|r 30 LLDLNILKKI---AESSGSLDGITVIEIGAGPGNLTQMLLTL-GA-RKVIVIEKDQQFFPILKDISSQHPN-RLEIIQDD 103 (284)
Q Consensus 30 L~d~~i~~~i---v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~-~~v~aiEiD~~~~~~l~~~~~~~~~-~~~ii~~D 103 (284)
..-..+++.+ |+-+++.++-.-|+.=-|.|.=++.||++ +. -.++++|.|+...+.+++.++.+.+ ++.++++.
T Consensus 7 ~H~sVLL~E~Cklv~~L~ik~~G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~~~~~~~~~~~~ 86 (323)
T TIGR00006 7 KHQSVLLDEVCKLVEGLNIKPDGIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDFEGRRVVLIHDN 86 (323)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 89861088999997276548887365402585178999985239995078874798999999998532106757885076
Q ss_pred HCCC
Q ss_conf 0014
Q gi|254780398|r 104 ALKV 107 (284)
Q Consensus 104 al~~ 107 (284)
|-.+
T Consensus 87 F~~~ 90 (323)
T TIGR00006 87 FANF 90 (323)
T ss_pred CHHH
T ss_conf 0342
No 156
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.12 E-value=0.037 Score=33.75 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=64.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCC
Q ss_conf 99999997198999879997589882346775023525998425543036887875322001220000000143155213
Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFN 114 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~ 114 (284)
+++.+-++-+.-.+..|||.|.|.|--..+-++.+++.|++.++|+.....++-+...+.-.+.+++.|.+- +.+.
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~--- 142 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPA--- 142 (218)
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCEEEEEECCCCC-CCCC---
T ss_conf 877876086310365324415666708899998503788762788478888530622156216774313368-9864---
Q ss_pred CCCCEEEEECCCHHHHH
Q ss_conf 32220112023224678
Q gi|254780398|r 115 ISSPIRIIANLPYNIGT 131 (284)
Q Consensus 115 ~~~~~~vvgNLPYnIss 131 (284)
-...+.|-+=|+=+-
T Consensus 143 --~Dl~LagDlfy~~~~ 157 (218)
T COG3897 143 --FDLLLAGDLFYNHTE 157 (218)
T ss_pred --EEEEEEECEECCCHH
T ss_conf --038985030028358
No 157
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=94.10 E-value=0.15 Score=29.93 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=40.2
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 19899987999758988234677502352-59984255430368878753220012200000001
Q gi|254780398|r 43 SGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 43 ~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
.+......|++||.|.|.++..++++.|. +.+..+. +..++. ... ..+++++.||+.+
T Consensus 97 ~d~~~~~~vvDvGGG~G~~~~~i~~~~P~l~~~v~Dl-p~v~~~----a~~-~~rv~~~~gdff~ 155 (239)
T pfam00891 97 FDFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDL-PHVIAD----APS-ADRVEFVGGDFFE 155 (239)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEC-HHHHHH----CCC-CCCEEEECCCCCC
T ss_conf 3766787689967981899999999889983898646-877862----764-6854884487777
No 158
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=94.03 E-value=0.1 Score=30.96 Aligned_cols=88 Identities=26% Similarity=0.336 Sum_probs=57.6
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHHHHH-HCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCC
Q ss_conf 65841123989999999971989-99879997589882346775-02352-59984255430368878753220-01220
Q gi|254780398|r 24 YMGQNFLLDLNILKKIAESSGSL-DGITVIEIGAGPGNLTQMLL-TLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEI 99 (284)
Q Consensus 24 ~lGQnFL~d~~i~~~iv~~~~~~-~~~~VlEIGpG~G~LT~~Ll-~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~i 99 (284)
++=|+.+.|.=.+-.-.+..+.. +++.+++||.|.|.---.|+ =..+. +++.+|-..+=+..|++...+.+ +++++
T Consensus 25 ~~~~~h~lDSl~~~~~~~~~~~~r~~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L~L~N~~i 104 (197)
T TIGR00138 25 EIIQRHLLDSLKLLELFDISKNQRTGKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKELGLNNVEI 104 (197)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 78776402224330000245666633126773478971456534220576428984277406899999999838998242
Q ss_pred CHHHHCC---CCHHH
Q ss_conf 0000001---43155
Q gi|254780398|r 100 IQDDALK---VDFEK 111 (284)
Q Consensus 100 i~~Dal~---~d~~~ 111 (284)
+++.+-+ .+...
T Consensus 105 ~~~R~E~~g~~~~~~ 119 (197)
T TIGR00138 105 LNGRVEDLGSKQHEE 119 (197)
T ss_pred EEHHHHHCCCCCCCC
T ss_conf 001125505545333
No 159
>pfam05206 TRM13 Methyltransferase TRM13. This is a family of eukaryotic proteins which are responsible for 2'-O-methylation of tRNA at position 4. TRM13 shows no sequence similarity to other known methyltransferases.
Probab=93.98 E-value=0.18 Score=29.54 Aligned_cols=105 Identities=13% Similarity=0.245 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC------CEEEEECCCCCCHHHHHHHHHHHHC-CCCCCHHHHCCC
Q ss_conf 999999971989998799975898823467750235------2599842554303688787532200-122000000014
Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA------RKVIVIEKDQQFFPILKDISSQHPN-RLEIIQDDALKV 107 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~------~~v~aiEiD~~~~~~l~~~~~~~~~-~~~ii~~Dal~~ 107 (284)
++.-+.+.--+.++..++|.|+|.|.||..+.+.-. ..++.||+...=...=. .....++ .++=+..|+-++
T Consensus 6 lig~le~~~ll~~~~~~vEfGAGrG~LS~~v~~~l~~~~~~~~~~~LIDR~s~R~K~D~-k~r~~~~~~~~R~riDI~DL 84 (256)
T pfam05206 6 LIGNLEELGLLSPSTAYVEFGAGKGELSRYLNQCLLEDQLSNPGFVLIDRASNRLKADR-KIRKDESPPIKRLRIDIKDL 84 (256)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHH-HHHCCCCCCEEEEEEEHHHC
T ss_conf 99999973998999889997896469999999985234566763899988887754311-02137888258999532545
Q ss_pred CHHHHCCC--CCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 31552133--2220112023224678899999852
Q gi|254780398|r 108 DFEKFFNI--SSPIRIIANLPYNIGTRLLFNWISA 140 (284)
Q Consensus 108 d~~~~~~~--~~~~~vvgNLPYnIss~Il~~ll~~ 140 (284)
++..+... ..|+..||====.-+|++-++.+..
T Consensus 85 ~L~~v~~~~~~~~~vai~KHLCG~ATDLtLrcl~~ 119 (256)
T pfam05206 85 NLDKLLSLLKGKPVVAVSKHLCGAATDLTLRCLLN 119 (256)
T ss_pred CHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 77664431067977999411366347599998761
No 160
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.91 E-value=0.42 Score=27.21 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=59.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCC-----CCEEEEECCCCCCHHHH-HHHH-HHHHC-CCCCCHHHHCCC-CHHHHCC-
Q ss_conf 8999879997589882346775023-----52599842554303688-7875-32200-122000000014-3155213-
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLG-----ARKVIVIEKDQQFFPIL-KDIS-SQHPN-RLEIIQDDALKV-DFEKFFN- 114 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~-----~~~v~aiEiD~~~~~~l-~~~~-~~~~~-~~~ii~~Dal~~-d~~~~~~- 114 (284)
+.++..++|.|+|.+.=|+.|+..- +-..++|+|...+.+.. .+.. ..+++ .+.-+.||+.+. +|.....
T Consensus 74 i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCC
T ss_conf 58997699746887245899999998549974288651769999999987424048975588887537876542057544
Q ss_pred CCCCE------EEEECCCHHHHHHHHHHHHH
Q ss_conf 32220------11202322467889999985
Q gi|254780398|r 115 ISSPI------RIIANLPYNIGTRLLFNWIS 139 (284)
Q Consensus 115 ~~~~~------~vvgNLPYnIss~Il~~ll~ 139 (284)
.+.|- --|||..=.=+..+|.++..
T Consensus 154 ~~~~~l~~flGStIGNf~~~eA~~fL~~~~~ 184 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 6787599961654467897999999999999
No 161
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=93.83 E-value=0.16 Score=29.84 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=54.2
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECC
Q ss_conf 987999758988234677502352-59984255430368878753220-0122000000014315521332220112023
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANL 125 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNL 125 (284)
+..+++||.|.|.--..|+-..+. +++.+|.+.+=+..|++...... .++++++..+-+++...-++. .-.+-++.+
T Consensus 49 ~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~~~~~D~-v~aRA~a~l 127 (184)
T pfam02527 49 RIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQHEEQYDV-ITSRAVASL 127 (184)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCE-EEECHHCCH
T ss_conf 9868834798884679999967785599992828999999999998599976999560441464467878-998100579
Q ss_pred CH
Q ss_conf 22
Q gi|254780398|r 126 PY 127 (284)
Q Consensus 126 PY 127 (284)
|.
T Consensus 128 ~~ 129 (184)
T pfam02527 128 NE 129 (184)
T ss_pred HH
T ss_conf 99
No 162
>KOG1661 consensus
Probab=93.80 E-value=0.068 Score=32.12 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=58.2
Q ss_pred CCC-CCCCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHH-CCCC--EEEEECCCCCCHHHHHHHHHHHH---
Q ss_conf 658-411239899999999719--89998799975898823467750-2352--59984255430368878753220---
Q gi|254780398|r 24 YMG-QNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLT-LGAR--KVIVIEKDQQFFPILKDISSQHP--- 94 (284)
Q Consensus 24 ~lG-QnFL~d~~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~-~~~~--~v~aiEiD~~~~~~l~~~~~~~~--- 94 (284)
+.| +-=+--+.+-..+.+.+. +.++-..|++|.|.|-||-.... .++. ..+.||--+.++++.+++...+.
T Consensus 56 ~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~ 135 (237)
T KOG1661 56 KIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTS 135 (237)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56775487154789999999998623473101337874089999999945777665144415999999998777650473
Q ss_pred --------CCCCCCHHHHCCC
Q ss_conf --------0122000000014
Q gi|254780398|r 95 --------NRLEIIQDDALKV 107 (284)
Q Consensus 95 --------~~~~ii~~Dal~~ 107 (284)
.++.++.||..+.
T Consensus 136 e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661 136 ESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred HHHHHHCCCCEEEEECCCCCC
T ss_conf 045564148647996776234
No 163
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=93.64 E-value=0.15 Score=29.99 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=48.9
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf 71989998799975898823467750235-259984255430368878753220-01220000000143
Q gi|254780398|r 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284)
Q Consensus 42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284)
.+...++..|++||.|.|.--..|+-..+ .+++.+|...+=+..|++...... .+++++++-+-++.
T Consensus 64 ~~~~~~~~~vlDiGSGaGfPGiplAI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~ 132 (216)
T PRK00107 64 YLQGEKPIRVLDVGSGAGFPGIPLAIARPDLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFG 132 (216)
T ss_pred HCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC
T ss_conf 337665877997079999426789997787729997387699999999999769998799863544046
No 164
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=93.62 E-value=0.23 Score=28.84 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=56.0
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCH
Q ss_conf 99997198999879997589882346775023--5259984255430368878753220-012200000001431
Q gi|254780398|r 38 KIAESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDF 109 (284)
Q Consensus 38 ~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~ 109 (284)
-.+..+++.+++.||+.-+|+|.=|..|++.. ...|+|+|+++.=+..|++...... .++.+.+.|+.+.+.
T Consensus 75 l~~~~L~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~ 149 (277)
T pfam01189 75 LDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQ 149 (277)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 899971889999898836788816999998758987799837978999999999997599747999664445574
No 165
>KOG3924 consensus
Probab=93.59 E-value=0.15 Score=30.03 Aligned_cols=110 Identities=16% Similarity=0.262 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCC---------CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHH-
Q ss_conf 984336584112---------39899999999719899987999758988234677502-3525998425543036887-
Q gi|254780398|r 19 IIPKKYMGQNFL---------LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILK- 87 (284)
Q Consensus 19 ~~p~k~lGQnFL---------~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~- 87 (284)
+-+.+.|-|||= ..++-...+++.+++.++|.....|.|-|.+-...+.. +++.-+.+|+-....+...
T Consensus 155 ipd~~~L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~ 234 (419)
T KOG3924 155 IPDPAILNQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAEL 234 (419)
T ss_pred CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHH
T ss_conf 69978998752355663055533999999999963698872347776510236788875340010340541584788999
Q ss_pred ---------HHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH
Q ss_conf ---------87532200122000000014315521332220112023224
Q gi|254780398|r 88 ---------DISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN 128 (284)
Q Consensus 88 ---------~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn 128 (284)
+.|...++.++.++|+|+.-+............++-|.-|.
T Consensus 235 ~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd 284 (419)
T KOG3924 235 NKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD 284 (419)
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHCCEEEEEECCCCC
T ss_conf 99999999998477867214036354788889988630528887033479
No 166
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=93.57 E-value=0.086 Score=31.49 Aligned_cols=57 Identities=21% Similarity=0.451 Sum_probs=41.8
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCC---HHHHHHHHHH
Q ss_conf 99999971989998799975898823467750235259984255430---3688787532
Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQF---FPILKDISSQ 92 (284)
Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~---~~~l~~~~~~ 92 (284)
=+|++.++.+..+..|++||||.|.---.++..||+.++.++--.-+ .+.+++.+..
T Consensus 110 WDR~l~~~~pL~~~~i~DVGC~~GY~~~~M~~~Gak~~VG~DP~~L~~~QFE~~~~ll~~ 169 (316)
T TIGR00452 110 WDRVLPHLSPLKGRTILDVGCGSGYHLWRMLGEGAKLLVGIDPTELFLCQFEAVRKLLDN 169 (316)
T ss_pred HHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 554312466545777898336870688977620782787436578999999999987242
No 167
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=93.57 E-value=0.086 Score=31.47 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=42.7
Q ss_pred EEEEECCCCCHHHHHHHHCCCC---EEEEECCCCCCHHHHHHHHHHHHC-C--CCCCHH
Q ss_conf 7999758988234677502352---599842554303688787532200-1--220000
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQFFPILKDISSQHPN-R--LEIIQD 102 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~~---~v~aiEiD~~~~~~l~~~~~~~~~-~--~~ii~~ 102 (284)
.|++||+..|..|...++..+. +|+|+|-++..++.|++....++. + +++++.
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~~~~~~~~~~~ 59 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGLPNKEVKLLNA 59 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 97870177047999999741788731899868957999999862037878732899730
No 168
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=93.55 E-value=0.12 Score=30.47 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCC-EEEEECCCCCCHHHHHHHHHHHHCC--CCCCHHH
Q ss_conf 1239899999999719899987999758988234677502--352-5998425543036887875322001--2200000
Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GAR-KVIVIEKDQQFFPILKDISSQHPNR--LEIIQDD 103 (284)
Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~-~v~aiEiD~~~~~~l~~~~~~~~~~--~~ii~~D 103 (284)
|.+-.++.++++... .++..|-+.||-.|+.|.++-+. .+. ++++|+--..+++..++....+.+. ++++++|
T Consensus 45 yfI~~nL~E~~~~ks--lp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~~~~D 122 (247)
T TIGR00740 45 YFIGMNLAERFVPKS--LPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEVLCMD 122 (247)
T ss_pred HHHHHHHHHHHHHHC--CCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 999877776543311--688741223343235776653046878537988418888999999999874247882320102
Q ss_pred HCCCCHHH
Q ss_conf 00143155
Q gi|254780398|r 104 ALKVDFEK 111 (284)
Q Consensus 104 al~~d~~~ 111 (284)
++++.+.+
T Consensus 123 ~~~v~~~~ 130 (247)
T TIGR00740 123 IREVEIKN 130 (247)
T ss_pred HHHHHHHH
T ss_conf 45666655
No 169
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=93.42 E-value=0.41 Score=27.28 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=66.1
Q ss_pred CCCC--CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCC
Q ss_conf 5841--12398999999997198999879997589882346775023525998425543036887875322---001220
Q gi|254780398|r 25 MGQN--FLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEI 99 (284)
Q Consensus 25 lGQn--FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~i 99 (284)
-||+ |-.|.+-.++.++.. .++..||..=+=+|+.+-+-+.-+|.+|+.|+......+..++++.-+ .++.++
T Consensus 101 ~gqktG~flDqR~nR~~~~~~--~~g~rvLn~Fsytg~fsv~A~~~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~ 178 (286)
T pfam10672 101 RNQNFGLFLDMRLGRRWVQEN--AKGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSF 178 (286)
T ss_pred CCCCCEEEHHHHHHHHHHHHH--CCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 586667834238889999987--289832531147869999987679877999919889999999999976999543699
Q ss_pred CHHHHCCC
Q ss_conf 00000014
Q gi|254780398|r 100 IQDDALKV 107 (284)
Q Consensus 100 i~~Dal~~ 107 (284)
+.+|++++
T Consensus 179 ~~~D~f~~ 186 (286)
T pfam10672 179 LGHDIFKS 186 (286)
T ss_pred EEEHHHHH
T ss_conf 98309999
No 170
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=93.21 E-value=0.73 Score=25.71 Aligned_cols=112 Identities=20% Similarity=0.269 Sum_probs=68.0
Q ss_pred HCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEE----EEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 012312332345432013320120001100001057875788----7301258855347678999999997273138999
Q gi|254780398|r 164 AQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTV----IHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQ 239 (284)
Q Consensus 164 a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~v----i~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~ 239 (284)
++.+--+|=+.+.+++.+..+.+. -|-+.-.=-|++...+ ..++|| |...+...+.++++ ..++++|..
T Consensus 186 ~r~~v~eYlr~TaIvnPhA~I~f~--~Pdg~~~~f~R~t~~lP~~P~eikPH--P~Gvelg~L~~ml~---~t~~~tl~~ 258 (533)
T PRK04184 186 AKQGIYEYLKRTAIVNPHARITLK--DPDGEELVFERATDELPKPPKEIKPH--PHGVDLGTLKRMAA---RTDRSTLSE 258 (533)
T ss_pred HHCCHHHHHHHHHCCCCCEEEEEE--CCCCCEEEEEECCCCCCCCCCCCCCC--CCCCCHHHHHHHHH---HCCCCCHHH
T ss_conf 423699999765103784499998--89998799840456689898767899--86265889999998---759977899
Q ss_pred HHHHC----CC---HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 87631----81---789997877746571208999999999998636466
Q gi|254780398|r 240 SLKRL----GG---ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQDI 282 (284)
Q Consensus 240 ~L~~~----~~---~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~~i 282 (284)
=|.+. .. .++++.+|++++++|.+|+.+|..+|.+.+.+-+..
T Consensus 259 FL~~eFsrVg~~~A~ei~~~agl~~~~~p~~l~~~e~~~L~~a~~~~k~~ 308 (533)
T PRK04184 259 FLVSEFSRVGEKTAKEILEYAGLDPNKKPKELTWEEAERLVEAMKKMKFM 308 (533)
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99854355698999999997289999990018999999999999847788
No 171
>KOG2671 consensus
Probab=93.10 E-value=0.28 Score=28.31 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=121.6
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHH----
Q ss_conf 9999998189843365841123989999999971989998799975898823467750235259984255430368----
Q gi|254780398|r 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI---- 85 (284)
Q Consensus 10 i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~---- 85 (284)
=|+++++|.++-|.-.| |=-.|..+.--++..+-..+||.|.+==.|+|+|--..+.-|+ .|+.-|||-+.+..
T Consensus 172 ~R~li~~y~LK~R~yiG-nTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~ 249 (421)
T KOG2671 172 QRELIEKYDLKKRCYIG-NTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGE 249 (421)
T ss_pred HHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEHHHHCC-EEECCCCCHHEEECCCCC
T ss_conf 47676540611253237-7665556788875553067998874476566742666223063-564124531201134577
Q ss_pred ---HHHHHHHHH---CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHH
Q ss_conf ---878753220---01220000000143155213322201120232246788999998520100000011020334478
Q gi|254780398|r 86 ---LKDISSQHP---NRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVG 159 (284)
Q Consensus 86 ---l~~~~~~~~---~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA 159 (284)
.+.+|.++. --+.+..+|+..-.|..-. .--.+|.-.||.|--.. .+.-... .+=.-.| -
T Consensus 250 ~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~---~fDaIvcDPPYGVRe~~-rk~~~k~---------~~r~~~~-~ 315 (421)
T KOG2671 250 DESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL---KFDAIVCDPPYGVREGA-RKTGKKK---------SVRTTEE-S 315 (421)
T ss_pred CCCHHHHHHHHCCCCHHHHEEEECCCCCCHHHCC---EEEEEEECCCCCHHHHH-HHHCCCC---------CCCCCCC-C
T ss_conf 7426676877477532032045105676301032---33378727981145666-6541457---------6557521-2
Q ss_pred HHHHHCCCHHHHHHHHHHHCC-CCCEEEECCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 875301231233234543201-3320120001100001057875788730125
Q gi|254780398|r 160 ERITAQKNSPHYGRLSVLTGW-RTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 (284)
Q Consensus 160 ~Rl~a~pg~k~Yg~LSv~~q~-~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk 211 (284)
.|..--|.++.|+..|+.--. .|-.+.+-.=.+-+|||+|.-+---....|-
T Consensus 316 ~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~~e~~~~~~~P~ 368 (421)
T KOG2671 316 SRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTITEEYGEDDIPS 368 (421)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCC
T ss_conf 43355776446679999750887637663028558983474121257434777
No 172
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.91 E-value=0.4 Score=27.30 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=56.0
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC---EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCC
Q ss_conf 999999719899987999758988234677502352---59984255430368878753220-0122000000014
Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR---KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKV 107 (284)
Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~---~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~ 107 (284)
.--.+..+++.+++.||+.=+++|.=|..|++...+ .|+|+|+|++=...+++...... .++.+++.|+..+
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 7667997199997968880799976999999966899876997449878999999999971998348995133014
No 173
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=92.77 E-value=0.11 Score=30.89 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=78.5
Q ss_pred CHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCC
Q ss_conf 98999999997----1989998799975898823467750235259984255430368878753220-012200000001
Q gi|254780398|r 32 DLNILKKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALK 106 (284)
Q Consensus 32 d~~i~~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~ 106 (284)
|..|..+|.+. .+-..|-..||.=||.|..|.+|++.. .+|.|=||-+.-+..+..+...+. .|+++|--.|-+
T Consensus 184 Na~vn~kMLeWA~~~~~~~~g~DLLELYCGNGNFsLaLA~~f-~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEE 262 (361)
T TIGR02143 184 NAAVNQKMLEWALEVTQNSKGMDLLELYCGNGNFSLALAQNF-ERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEE 262 (361)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHH
T ss_conf 189999999999998358888720100026753104456533-3455430240247999999871798831010232799
Q ss_pred CCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHH--HHHCCCCCE
Q ss_conf 431552133222011202322467889999985201000000110203344788753012312332345--432013320
Q gi|254780398|r 107 VDFEKFFNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS--VLTGWRTKA 184 (284)
Q Consensus 107 ~d~~~~~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LS--v~~q~~~~v 184 (284)
+ .+-| .|.+++.||. =+-=--|++
T Consensus 263 f---------------------------------------------------t~A~---~~~R~F~RL~d~gIdL~~Y~f 288 (361)
T TIGR02143 263 F---------------------------------------------------TEAM---NGVREFRRLKDGGIDLKSYNF 288 (361)
T ss_pred H---------------------------------------------------HHHH---CCCCCCCCCCCCCCCCCCCCC
T ss_conf 9---------------------------------------------------9986---037765465668863342025
Q ss_pred EEECCCCCCEECCCCCCCEEEEEECCCCC---CCCCCHHHHH
Q ss_conf 12000110000105787578873012588---5534767899
Q gi|254780398|r 185 TMMFDISPHVFFPSPKVTSTVIHFIPHLN---PIPCCLESLK 223 (284)
Q Consensus 185 ~~~~~V~~~~F~P~PkVdS~vi~l~pk~~---~~~~~~~~~~ 223 (284)
..+|.-||-+ ..|...+.|..+-. +..|+++.+.
T Consensus 289 ~tiFVDPPRa-----GlD~~t~~Lv~~y~rIlYISCNP~TL~ 325 (361)
T TIGR02143 289 NTIFVDPPRA-----GLDPDTVKLVQKYERILYISCNPETLK 325 (361)
T ss_pred CEEEECCCCC-----CCCHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 6026779888-----889899999962598799846968999
No 174
>PRK10742 putative methyltransferase; Provisional
Probab=92.74 E-value=0.23 Score=28.87 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=54.2
Q ss_pred HHHHHCCCCCCC--EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----------HHCCCCCCHHHHC
Q ss_conf 999971989998--7999758988234677502352599842554303688787532----------2001220000000
Q gi|254780398|r 38 KIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ----------HPNRLEIIQDDAL 105 (284)
Q Consensus 38 ~iv~~~~~~~~~--~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~----------~~~~~~ii~~Dal 105 (284)
-+++.+++..+. +||+--+|.|.=+--|+..|| +|+.+|..+-++..|++-+.. ..++++++++|+.
T Consensus 77 ~lakAvG~k~~~~P~VlDATAGLGrDAfvLAslGc-~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds~ 155 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHH
T ss_conf 66787566789998189878874688999981798-69999788999999999999987381558999961678658689
Q ss_pred CC
Q ss_conf 14
Q gi|254780398|r 106 KV 107 (284)
Q Consensus 106 ~~ 107 (284)
++
T Consensus 156 ~~ 157 (250)
T PRK10742 156 TA 157 (250)
T ss_pred HH
T ss_conf 99
No 175
>KOG2651 consensus
Probab=92.73 E-value=0.22 Score=28.99 Aligned_cols=64 Identities=27% Similarity=0.340 Sum_probs=43.0
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 818984336584112398999999997----1989998799975898823467750235259984255430368878
Q gi|254780398|r 16 HYKIIPKKYMGQNFLLDLNILKKIAES----SGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 16 ~~~~~p~k~lGQnFL~d~~i~~~iv~~----~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284)
+...+|+| || =++++.+. .+...-+.|+++|+|.|-|++.|.-..--.|.|||-+..+.+..++
T Consensus 127 rkh~~~k~---qh------Ei~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651 127 RKHVRPKK---QH------EIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHCCCHHH---HH------HHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 51001788---98------9999999999887651871141157773289999864268169996463688999998
No 176
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.48 E-value=0.13 Score=30.46 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 89999999971989998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
+..+..++..++..+-+.++++|||+|-.-..|=.. +.+++.|+|..+|++...++--. + ++.++|+..
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y-D---~L~~Aea~~ 179 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY-D---TLYVAEAVL 179 (287)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHH-HHHCCCCCHHHHHHHHHHHCCCH-H---HHHHHHHHH
T ss_conf 899999997515776202344266767662767888-86512776269999998862415-7---888989998
No 177
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=92.38 E-value=0.51 Score=26.68 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-------------HHHHCCCC
Q ss_conf 98999999997198999879997589882346775023525998425543036887875-------------32200122
Q gi|254780398|r 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS-------------SQHPNRLE 98 (284)
Q Consensus 32 d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~-------------~~~~~~~~ 98 (284)
++-+.+. ...++..++..||--|||.|.=-..|+++|. .|+++|+-+..+....+.. ....++++
T Consensus 8 np~L~~~-~~~l~~~~~~rvlVPlCGks~D~~wLa~~G~-~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~ 85 (203)
T pfam05724 8 NPLLVRH-WDALNLPPGLRVLVPLCGKALDMVWLAEQGH-FVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIE 85 (203)
T ss_pred CHHHHHH-HHHCCCCCCCEEEEECCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEE
T ss_conf 9799999-9863899998899968998599999983898-4899956799999999973788751013662132058648
Q ss_pred CCHHHHCCCCHHHHCC---CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHH
Q ss_conf 0000000143155213---3222011202322467889999985201000000110203344788753012312332345
Q gi|254780398|r 99 IIQDDALKVDFEKFFN---ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLS 175 (284)
Q Consensus 99 ii~~Dal~~d~~~~~~---~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LS 175 (284)
+.+||+.+++...... ..... ..--||-..=.+-...+... .+++.+.+.+.+...- ..+.++|=+-.-.-+.
T Consensus 86 i~~gD~F~l~~~~~g~fD~IyDra-al~ALpp~~R~~Ya~~l~~l--L~pgg~~lLitl~y~~-~~~~GPPfsv~~~Ev~ 161 (203)
T pfam05724 86 LLCGDFFTLPREELGKFDLIYDRA-ALCALPPEMRPRYAKQMYEL--LPPGGEGLLITLDYPQ-TDHEGPPFSVPAAELE 161 (203)
T ss_pred EEECCHHCCCHHHCCCCCEEEEEC-CEEECCHHHHHHHHHHHHHH--HCCCCEEEEEEEECCC-CCCCCCCCCCCHHHHH
T ss_conf 997732137843468734899703-23538989999999999997--1899669999997386-5579948989999999
Q ss_pred HHHCCCCCEEEECCCCCCEECCCCC
Q ss_conf 4320133201200011000010578
Q gi|254780398|r 176 VLTGWRTKATMMFDISPHVFFPSPK 200 (284)
Q Consensus 176 v~~q~~~~v~~~~~V~~~~F~P~Pk 200 (284)
-+..-.|+++.+.. .+.+-+.|+
T Consensus 162 ~lf~~~f~i~~L~~--~d~~~~~~~ 184 (203)
T pfam05724 162 ALFGGGWKVARLER--EDALVPEPR 184 (203)
T ss_pred HHHCCCCEEEEEEE--ECCCCCCHH
T ss_conf 87089856999650--044545835
No 178
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=92.29 E-value=0.32 Score=27.91 Aligned_cols=106 Identities=15% Similarity=0.306 Sum_probs=62.1
Q ss_pred CCCCCCCC-----HHHHHHHHHHCCCC--------CCCEEEEECCCCCHHHHHHHHC-C-CCEEEEECCCCCCHHHHHHH
Q ss_conf 58411239-----89999999971989--------9987999758988234677502-3-52599842554303688787
Q gi|254780398|r 25 MGQNFLLD-----LNILKKIAESSGSL--------DGITVIEIGAGPGNLTQMLLTL-G-ARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 25 lGQnFL~d-----~~i~~~iv~~~~~~--------~~~~VlEIGpG~G~LT~~Ll~~-~-~~~v~aiEiD~~~~~~l~~~ 89 (284)
+-.+||+= -+-++.+.+.+... +.-.+|+||.|.-.+ .+|+-. - -.+.++.|||+.-++.+++.
T Consensus 82 iP~~~LcPpIPgR~nYIh~iaDLL~~~~~~~~p~g~~v~gLDIGtGAncI-YPLLG~~~ygW~fvgtDId~~sl~~A~~~ 160 (326)
T PRK11727 82 IPAGYLCPPIPGRADYIHHLADLLAEDNSGVIPKGANVRVLDIGVGANCI-YPIIGVQEYGWRFVGSDIDPQALASAQAI 160 (326)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEE-EEECCCEECCCEEEEECCCHHHHHHHHHH
T ss_conf 88877289998537799999998611366778888872367505674311-21014300176379961798999999999
Q ss_pred HHHHH---CCCCCC-HHHHCCCCHHHHCCCCCC-EEEEECCCHHHHHH
Q ss_conf 53220---012200-000001431552133222-01120232246788
Q gi|254780398|r 90 SSQHP---NRLEII-QDDALKVDFEKFFNISSP-IRIIANLPYNIGTR 132 (284)
Q Consensus 90 ~~~~~---~~~~ii-~~Dal~~d~~~~~~~~~~-~~vvgNLPYnIss~ 132 (284)
...++ +++++. +.|-..+ +......+.. ...+-|-||+-|..
T Consensus 161 v~~N~~L~~~I~lr~q~~~~~I-f~gii~~~e~fdftmCNPPF~~S~e 207 (326)
T PRK11727 161 ISANPGLNGAIRLRLQKDSKAI-FKGIIHKNERFDLTLCNPPFHASAA 207 (326)
T ss_pred HHHCCCCCCCEEEEECCCHHHH-HCCCCCCCCEEEEEECCCCCCCCHH
T ss_conf 9848201052799962786765-3245887665777851898767899
No 179
>KOG1541 consensus
Probab=91.99 E-value=0.35 Score=27.70 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=48.3
Q ss_pred CCCCCCC---CCCHHHHHHHHHHCCCCC--CCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 3658411---239899999999719899--98799975898823467750235259984255430368878
Q gi|254780398|r 23 KYMGQNF---LLDLNILKKIAESSGSLD--GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 23 k~lGQnF---L~d~~i~~~iv~~~~~~~--~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284)
+++.||= .+-...+.+-.+.+.... ..-||+||||.|--+..|.+.+ ...+.++|.+.+.+...+
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541 21 PKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVE 90 (270)
T ss_pred HHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECCCC-CEEEEECCCHHHHHHHHH
T ss_conf 1026663443221778887898760899887179983457774320021689-558862289899999997
No 180
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.95 E-value=0.74 Score=25.68 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=61.5
Q ss_pred CCCCCCCCHHHHHHHHH-HCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCC
Q ss_conf 58411239899999999-7198999879997589882346775023--5259984255430368878753220-012200
Q gi|254780398|r 25 MGQNFLLDLNILKKIAE-SSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEII 100 (284)
Q Consensus 25 lGQnFL~d~~i~~~iv~-~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii 100 (284)
-|-=|+.|++-.--.+. .+++.+++.||+.-+++|.=|..|++.- -..++|.|++..=+..|++...... .++.+.
T Consensus 90 aG~~yiQe~ssm~~~~~l~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt 169 (471)
T PRK11933 90 SGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALT 169 (471)
T ss_pred CCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 85499977688557888524889999899957785489999999758996699983889999999999997199847999
Q ss_pred HHHHCCC
Q ss_conf 0000014
Q gi|254780398|r 101 QDDALKV 107 (284)
Q Consensus 101 ~~Dal~~ 107 (284)
+.|+..+
T Consensus 170 ~~d~~~~ 176 (471)
T PRK11933 170 HFDGRVF 176 (471)
T ss_pred ECCHHHH
T ss_conf 3586674
No 181
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=91.84 E-value=0.28 Score=28.27 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=65.4
Q ss_pred HHCCCCCC-CEEEEECCCCCHHHHHHHHCCC--C-EEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCCHHHHCC
Q ss_conf 97198999-8799975898823467750235--2-5998425543036887875322--001220000000143155213
Q gi|254780398|r 41 ESSGSLDG-ITVIEIGAGPGNLTQMLLTLGA--R-KVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVDFEKFFN 114 (284)
Q Consensus 41 ~~~~~~~~-~~VlEIGpG~G~LT~~Ll~~~~--~-~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d~~~~~~ 114 (284)
....-... ..++++|.|.|.+...++...+ . .+.++++........++....+ .+++.+++++.++--...-.
T Consensus 119 ~~~~~~~~p~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 197 (311)
T TIGR00536 119 SLLSQPPLPLHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGG- 197 (311)
T ss_pred HHHCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC-
T ss_conf 5411477650111014563156665543046666226641122367888887677643201200101124443320366-
Q ss_pred CCCCEEEEECCCHHHHHHHHH
Q ss_conf 322201120232246788999
Q gi|254780398|r 115 ISSPIRIIANLPYNIGTRLLF 135 (284)
Q Consensus 115 ~~~~~~vvgNLPYnIss~Il~ 135 (284)
+ .--.+++|-||--......
T Consensus 198 p-~~~~~~~~ppy~~~~~~~~ 217 (311)
T TIGR00536 198 P-KLDLLVSNPPYIDEEDLAD 217 (311)
T ss_pred C-CEEEEECCCCCCCHHHHHH
T ss_conf 5-2236645886544134555
No 182
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=91.77 E-value=0.18 Score=29.47 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=61.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCH-HHH----CCCC
Q ss_conf 899987999758988234677502352--59984255430368878753220-012200000001431-552----1332
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDF-EKF----FNIS 116 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~-~~~----~~~~ 116 (284)
+.+|+.||+.||-||.=+...+..... .|+||++.+- ..+| .+++.|.|||..=.- +.+ .+.+
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~---------k~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM---------KGFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCC---------CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 107886786578987387788776068533899854557---------88564661475447678789999998578987
Q ss_pred CCE-EEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHH-EEEHHHHHHHHHCCCH
Q ss_conf 220-112023224678899999852010000001102-0334478875301231
Q gi|254780398|r 117 SPI-RIIANLPYNIGTRLLFNWISADTWPPFWESLTL-LFQKEVGERITAQKNS 168 (284)
Q Consensus 117 ~~~-~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vl-mvQkEvA~Rl~a~pg~ 168 (284)
..+ -|+|-.-=|||.-.- +.+ .+.+-| ..--+.|.+++++-|+
T Consensus 101 kk~DVV~SDaaP~~SG~~~---iDh------~Rs~dLv~~aL~ia~~vL~~~Gn 145 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGIWD---IDH------LRSIDLVELALDIAKEVLKPKGN 145 (192)
T ss_pred CEEEEEEECCCCCCCCCCC---CCH------HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4377898526888789875---434------43799999999999998615898
No 183
>KOG3178 consensus
Probab=91.71 E-value=0.12 Score=30.52 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=45.2
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf 987999758988234677502352599842554303688787532200122000000014
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284)
-+..+++|.|.|.+|..++... .++..++.|..++......+. ++ ++-+.||.++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~--~g-V~~v~gdmfq~ 233 (342)
T KOG3178 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA--PG-VEHVAGDMFQD 233 (342)
T ss_pred CCEEEECCCCHHHHHHHHHHHC-CCCCEEECCHHHHHHHHHHHC--CC-CCEECCCCCCC
T ss_conf 7668875874769999999758-877255147899985223206--78-65123645345
No 184
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=91.64 E-value=0.15 Score=29.94 Aligned_cols=80 Identities=11% Similarity=0.236 Sum_probs=65.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCCCH
Q ss_conf 899999999719899987999758988234677502-352-5998425543036887875322-0012200000001431
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKVDF 109 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~d~ 109 (284)
...-+..++..++..|...|++-||++.-|..|.+. +.. +|..++..+.+..+.+++.... -+++.++||+|+++.+
T Consensus 31 ~~Wr~~~m~~m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~ 110 (231)
T TIGR02752 31 KKWRKDTMKRMNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPY 110 (231)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCC
T ss_conf 88999998776564041211210373378889888617777167400358899999988875432002223052001787
Q ss_pred HHH
Q ss_conf 552
Q gi|254780398|r 110 EKF 112 (284)
Q Consensus 110 ~~~ 112 (284)
++.
T Consensus 111 ~~~ 113 (231)
T TIGR02752 111 DDN 113 (231)
T ss_pred CCC
T ss_conf 766
No 185
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=91.48 E-value=0.38 Score=27.48 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=36.5
Q ss_pred CHHHHHHHHHCC------CHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCC
Q ss_conf 138999876318------17899978777465712089999999999986364
Q gi|254780398|r 234 RKTLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 (284)
Q Consensus 234 RK~l~~~L~~~~------~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~ 280 (284)
.|.+.-+|..++ ...++..+||+++.++.+||.+|.-+|.+.++++-
T Consensus 12 ~K~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~g~Ls~~qi~~I~~~I~~~~ 64 (122)
T PRK05179 12 NKRVVIALTYIYGIGRTRAKEILAAAGIDPDTRVKDLTDEELDKLREEIDKNY 64 (122)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 97868477300275899999999982999766887656999999999998157
No 186
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.98 E-value=0.84 Score=25.32 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=24.6
Q ss_pred EEEECCCC--CHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99975898--82346775023525998425543036887875322001220000000143
Q gi|254780398|r 51 VIEIGAGP--GNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 51 VlEIGpG~--G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
|+=+|+|. ..|.+.|...+ +.|+.||.|+..++.+.+.+. +..++||+...+
T Consensus 3 IiI~GaG~vG~~La~~Ls~e~-~dV~vID~d~~~~~~~~~~lD-----v~~i~Gd~~~~~ 56 (455)
T PRK09496 3 IIILGAGQVGGTLAERLVGEN-NDVTVIDTDEERLRRLQDRLD-----VRTVVGNGSHPD 56 (455)
T ss_pred EEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCC-----EEEEEECCCCHH
T ss_conf 999998889999999998689-979999899999999886258-----689996689999
No 187
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=90.71 E-value=0.48 Score=26.86 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=36.7
Q ss_pred CHHHHHHHHHCCC------HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCC
Q ss_conf 1389998763181------7899978777465712089999999999986364
Q gi|254780398|r 234 RKTLRQSLKRLGG------ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 (284)
Q Consensus 234 RK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~ 280 (284)
.|.+.-+|..++. ..+...+||+++.++.+||.+|.-.|.+.++++-
T Consensus 10 ~K~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~g~Ls~~qi~~I~~~I~~~~ 62 (113)
T TIGR03631 10 NKRVEIALTYIYGIGRTRARKILEKAGIDPDKRVKDLTEEELNAIREEIEAKY 62 (113)
T ss_pred CCCHHHHHHCEECCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 96746065200275899999999992999877864499999999999998257
No 188
>KOG0822 consensus
Probab=90.65 E-value=0.9 Score=25.13 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=47.4
Q ss_pred EEEEECCCCCHHHHHHHHCC----C-CEEEEECCCCCCHHHHHH-HHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 79997589882346775023----5-259984255430368878-7532200122000000014315
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLG----A-RKVIVIEKDQQFFPILKD-ISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~----~-~~v~aiEiD~~~~~~l~~-~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
.|.=+|+|-|-|-++.++.- - -+++|||+++..+-.|+. ++..-++++++|.+|--+++.+
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap 436 (649)
T KOG0822 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP 436 (649)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCHHHHCCEEEEEECCCCCCCCC
T ss_conf 9999638876078899999987247157999933854404245424365468169993431246884
No 189
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.65 E-value=0.44 Score=27.07 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCH-HHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEE
Q ss_conf 99987999758988234677502352-599842554303-6887875322001220000000143155213322201120
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFF-PILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~-~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvg 123 (284)
.+.+.+||||-|.|--+...++.++. ..+.+|.=..-+ ..|.......-.++.+..+||..+ ..
T Consensus 343 ~k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~Evy~nGva~ll~~i~~~~l~Niri~~~D~~~l--------------l~ 408 (503)
T PRK01544 343 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI--------------LN 408 (503)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEHHHHHHH--------------HH
T ss_conf 5670899953698799999999689888899940656699999999986997599873359999--------------98
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC-HHH---HEEEHHHHHHHHHC
Q ss_conf 2322467889999985201000000-110---20334478875301
Q gi|254780398|r 124 NLPYNIGTRLLFNWISADTWPPFWE-SLT---LLFQKEVGERITAQ 165 (284)
Q Consensus 124 NLPYnIss~Il~~ll~~~~~~~~~~-~~v---lmvQkEvA~Rl~a~ 165 (284)
.+|.+.-+.+.. + +|+-|- .-| =++|.|+.+.+...
T Consensus 409 ~lp~~sld~i~i--l----fPDPWpKkRH~KRRli~~efl~~l~~~ 448 (503)
T PRK01544 409 DLPNNSLDGIYI--L----FPDPWIKNKQKKKRIFNKERLKILQDK 448 (503)
T ss_pred HCCCCCCCEEEE--E----CCCCCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf 566204041678--7----899997553220017799999999997
No 190
>KOG1227 consensus
Probab=90.59 E-value=0.12 Score=30.53 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCCHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCC
Q ss_conf 99879997589882346-775023525998425543036887875322--0012200000001
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK 106 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~-~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~ 106 (284)
.+..|.+.=+|.|..|. .++..+|+.|+|+|.++..++-|++....+ ..+..+++||--.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~ 256 (351)
T KOG1227 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN 256 (351)
T ss_pred CCCHHHHHHCCCCEEEEEHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 653012234265448740230057457999945879999999877741157887866510236
No 191
>KOG1709 consensus
Probab=90.57 E-value=0.47 Score=26.89 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=48.9
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 9999997198999879997589882346775023525998425543036887875322001220000
Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQD 102 (284)
Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~ 102 (284)
-+..++.+. +++-+|||||-|.|.+-..+-++.+..-..||-.+.....+++.--..+.++.+..|
T Consensus 91 Mha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709 91 MHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred HHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 999999986-179648984231677888886359863178735978999998636654454688713
No 192
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.99 E-value=0.89 Score=25.17 Aligned_cols=117 Identities=21% Similarity=0.383 Sum_probs=75.2
Q ss_pred HHHHHHHC------CCCCCCCCCCCCCCCHHHHHHHH--HHCCCCCCCEEEEECCCCCHHHHHH--HHCCCCEEEEECCC
Q ss_conf 99999981------89843365841123989999999--9719899987999758988234677--50235259984255
Q gi|254780398|r 10 LKTILSHY------KIIPKKYMGQNFLLDLNILKKIA--ESSGSLDGITVIEIGAGPGNLTQML--LTLGARKVIVIEKD 79 (284)
Q Consensus 10 i~~ll~~~------~~~p~k~lGQnFL~d~~i~~~iv--~~~~~~~~~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD 79 (284)
-+++++++ +-.|...+-|-|..-+..+.+++ ..-+...|..|+=+| .--||.-- |...|++|..|+||
T Consensus 107 f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDID 184 (354)
T COG1568 107 FKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDID 184 (354)
T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC--CCHHHHHHHHHCCCCCEEEEEECH
T ss_conf 899999999998449986100135645753101344321104675787689970--750657889863887337998315
Q ss_pred CCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCE-EEEECCCHHHHH
Q ss_conf 430368878753220-0122000000014315521332220-112023224678
Q gi|254780398|r 80 QQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPI-RIIANLPYNIGT 131 (284)
Q Consensus 80 ~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~-~vvgNLPYnIss 131 (284)
++++...++...+.. |+++.+.-| |+-.+++-+ ...+ .++-..||.|..
T Consensus 185 ERli~fi~k~aee~g~~~ie~~~~D-lr~plpe~~--~~kFDvfiTDPpeTi~a 235 (354)
T COG1568 185 ERLIKFIEKVAEELGYNNIEAFVFD-LRNPLPEDL--KRKFDVFITDPPETIKA 235 (354)
T ss_pred HHHHHHHHHHHHHHCCCCHHHEEEH-HCCCCHHHH--HHHCCEEECCCHHHHHH
T ss_conf 8999999999998483315540305-104583988--85077643596335799
No 193
>pfam06831 H2TH Formamidopyrimidine-DNA glycosylase H2TH domain. Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidized purines from damaged DNA. This family is the central domain containing the DNA-binding helix-two turn-helix domain.
Probab=89.98 E-value=0.75 Score=25.63 Aligned_cols=52 Identities=21% Similarity=0.435 Sum_probs=41.2
Q ss_pred HHHHCCCCHHHHHHHH---------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 9997273138999876---------318178999787774657120899999999999863
Q gi|254780398|r 227 QEAFGKRRKTLRQSLK---------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 227 ~~~F~~RRK~l~~~L~---------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
...+..|++.++..|. +++..++|-.++|.|..++.+|+.+|+.+|++.+..
T Consensus 16 ~~~l~~~~~~Ik~~LlDQ~~iaGiGNiy~dEiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 76 (93)
T pfam06831 16 AERLAKKKRPIKTALLDQRVVAGIGNIYADEVLFRAGIHPERPASSLSKKECEALHTVIKD 76 (93)
T ss_pred HHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9998658751999986677425653999999999918996787061999999999999999
No 194
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.72 E-value=0.9 Score=25.14 Aligned_cols=60 Identities=27% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf 9879997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284)
.-.+++.=+|.|.+...+-..+..-+.|+|+|+..+..++..+.. -.++.+|+-+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~ 62 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEA 62 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC----CCCHHHHHHHHCHHH
T ss_conf 854998658756588999864984899874698899999985888----742030376605222
No 195
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=89.66 E-value=0.83 Score=25.36 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 999999971989998799975898823467750235----2599842554303688787532200122000000014315
Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA----RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~----~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
+++.+.+... .....||++|||.|.-|..|++.-+ ..+++++|-+..+..+.+.. + .....-+|.-+..+.
T Consensus 74 i~~~~~~~~~-~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~---~-~~~~~Va~~~~lP~~ 148 (272)
T PRK11088 74 VANLLAERLD-EKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRY---P-QVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCC---C-CCEEEEEECCCCCCC
T ss_conf 9999997567-7786488815877789999999741157873799811799999996268---8-854999610018887
No 196
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.08 E-value=1 Score=24.81 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 9971989998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
.+.+++.++|.||=|+.|--..-..|.+ +|++|+||+.++.-...++-+.....+ +. ++|+.+
T Consensus 28 ~~~L~~~~~d~vl~I~s~G~n~l~yl~~-~p~~i~aVDlN~~q~~Ll~LK~aa~~~-l~--~~~f~~ 90 (376)
T pfam11899 28 MEALNLGPDDTVLAITSAGCNALSYLTA-GPARVHAVDLNPAQNALLELKLAAIRA-LP--YEDFWR 90 (376)
T ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHHC-CC--HHHHHH
T ss_conf 9984899999799983774359997626-977689984899999999999999981-99--999999
No 197
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.53 E-value=1.3 Score=24.21 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=86.3
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCHHHHC
Q ss_conf 99999719899987999758988234677502352-59984255430368878753220--0122000000014315521
Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFF 113 (284)
Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~~~~~ 113 (284)
..++..+. .+..+.+||+-.|-|..+|++.+.. .++|.|+.+...+-..+.+.... .++++..+|.+..=-.
T Consensus 8 ~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--- 82 (226)
T COG2384 8 TTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--- 82 (226)
T ss_pred HHHHHHHH--CCCCEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC---
T ss_conf 99999987--5994553267625768999965983268983106678999999887458852077752687312576---
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCC-
Q ss_conf 3322201120232246788999998520100000011020334478875301231233234543201332012000110-
Q gi|254780398|r 114 NISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISP- 192 (284)
Q Consensus 114 ~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~- 192 (284)
+.+..+.+|+- .+...|..+++.... .+.. + .|++=.|++-.|.-=.-+..--|++.--.-+.-
T Consensus 83 ~d~~d~ivIAG----MGG~lI~~ILee~~~--~l~~--------~-~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~ 147 (226)
T COG2384 83 EDEIDVIVIAG----MGGTLIREILEEGKE--KLKG--------V-ERLILQPNIHTYELREWLSANSYEIKAETILEED 147 (226)
T ss_pred CCCCCEEEEEC----CCHHHHHHHHHHHHH--HHCC--------C-CEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 67768799957----867899999998665--5057--------4-1078788878899999999679514431112146
Q ss_pred CEECCC
Q ss_conf 000105
Q gi|254780398|r 193 HVFFPS 198 (284)
Q Consensus 193 ~~F~P~ 198 (284)
+-|||.
T Consensus 148 ~kiYEI 153 (226)
T COG2384 148 GKIYEI 153 (226)
T ss_pred CEEEEE
T ss_conf 738899
No 198
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=88.41 E-value=0.6 Score=26.23 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf 9998799975898823467750235-2599842554303688787532200122000000014
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284)
.+...|+++|||.--|+-+-+...+ -..+|.+||..+++.+...+....-..++...|.+.-
T Consensus 101 ~~p~sVlDlaCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~~~Dl~~~ 163 (248)
T pfam07091 101 PPPRSVLDLACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEVRVRDLLTD 163 (248)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 998644200026883014233689986799970777899999999986298763798761047
No 199
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.38 E-value=0.61 Score=26.19 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=41.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 899987999758988234677502352--599842554303688787532200122000000014315
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
+.++..|+++|+-||.=++.++++... .|++|++++- ...++ +..+++|+..-+-.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~---------~~~~~-V~~iq~d~~~~~~~ 100 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPG-VIFLQGDITDEDTL 100 (205)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCC---------CCCCC-CEEEEEECCCCCHH
T ss_conf 058987998387998499999997388884899977545---------56789-46884132484379
No 200
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=88.34 E-value=1.1 Score=24.52 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 411239899999999719899987999758988234677502--35259984255430368878753220
Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP 94 (284)
Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~ 94 (284)
.+|-.-.++...+.+-...-....||++|.|+|+-+-+..+. ..+++++||..+.+....+.+....+
T Consensus 14 a~Yaa~~~vl~Ei~~r~p~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~ 83 (275)
T pfam09243 14 ATYAAVRASLDELAERVPQFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIP 83 (275)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 7799999999999986799998757772775799999999884247689997489999999999985184
No 201
>KOG3115 consensus
Probab=88.31 E-value=0.54 Score=26.52 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=44.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH--------CCCCCCHHHHCCC
Q ss_conf 9987999758988234677502352-59984255430368878753220--------0122000000014
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP--------NRLEIIQDDALKV 107 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~--------~~~~ii~~Dal~~ 107 (284)
..-.+.+||||-|.|+-.|....|. -+...||--...++.++...... .++.+...+++++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred CCCEEEEECCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHH
T ss_conf 5642786046765010120546863012200126888899999999975265433456530342120220
No 202
>PRK10445 endonuclease VIII; Provisional
Probab=87.49 E-value=1.6 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHH---------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 273138999876---------318178999787774657120899999999999863
Q gi|254780398|r 231 GKRRKTLRQSLK---------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 231 ~~RRK~l~~~L~---------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
..|++++++.|- +++..++|-.++|.|..++.+|+.+++.+|++.+.+
T Consensus 148 ~~~~~~IK~~LLDQ~vvaGIGNIYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 204 (263)
T PRK10445 148 RFRNRQFSGLLLDQAFLAGLGNYLRVEILWQVGLTGQHKAKDLNAAQLDALAHALLD 204 (263)
T ss_pred CCCCCHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 025750766511688675113889989999828997887020999999999999999
No 203
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=87.35 E-value=2 Score=23.05 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEE--EECCCCCCHHHHHHHHH--HHHCCCCCCH
Q ss_conf 8411239899999999719899987999758988234677502352599--84255430368878753--2200122000
Q gi|254780398|r 26 GQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVI--VIEKDQQFFPILKDISS--QHPNRLEIIQ 101 (284)
Q Consensus 26 GQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~--aiEiD~~~~~~l~~~~~--~~~~~~~ii~ 101 (284)
.|=.-.|+.-|-.+.+..-...+..|||||.|+|.=.-+.++.-+. ++ -=|.|+....-.+.... ..+|-..-+.
T Consensus 4 spAaeRNk~pIl~vL~~~l~~~~~~VLEIaSGTGQHav~fA~~lP~-l~WqPSD~~~~~~~sI~aw~~~~~l~Nl~~P~~ 82 (201)
T pfam06080 4 APAAERNREPILSVLQSYFAKTTERVLEIASGTGQHAVFFAPLLPN-LTWQPSDPDPNLRGSIAAWADQQGLRNLRPPLH 82 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 8466735889999999982747885799768726999999987899-885158888778999999987437776688737
Q ss_pred HHHCCCCH
Q ss_conf 00001431
Q gi|254780398|r 102 DDALKVDF 109 (284)
Q Consensus 102 ~Dal~~d~ 109 (284)
=|+.+-.|
T Consensus 83 LDv~~~~w 90 (201)
T pfam06080 83 LDVTRPPW 90 (201)
T ss_pred EECCCCCC
T ss_conf 63278998
No 204
>pfam00416 Ribosomal_S13 Ribosomal protein S13/S18. This family includes ribosomal protein S13 from prokaryotes and S18 from eukaryotes.
Probab=87.11 E-value=0.4 Score=27.32 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=30.4
Q ss_pred HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCC
Q ss_conf 7899978777465712089999999999986364
Q gi|254780398|r 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDNQ 280 (284)
Q Consensus 247 ~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~~ 280 (284)
..+...+|++++.|+.+|+.+|..+|.+.++++.
T Consensus 29 ~~Ic~~lgi~~~~k~~~Lt~~qi~~l~~~i~~~~ 62 (106)
T pfam00416 29 NQILKKAGVDKDKRVGELTEEEIDRIRDIISNYV 62 (106)
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999991959775715499999999999997520
No 205
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=86.98 E-value=1.6 Score=23.58 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=51.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH---HHC-C-CCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 3658411239899999999719899987999758988234677---502-3-5259984255430368878753220012
Q gi|254780398|r 23 KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQML---LTL-G-ARKVIVIEKDQQFFPILKDISSQHPNRL 97 (284)
Q Consensus 23 k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~L---l~~-~-~~~v~aiEiD~~~~~~l~~~~~~~~~~~ 97 (284)
..+|.-.+.++.=+-.+-+.+--.+.+.|+|+|...|.=.... ++. + ..+|++|++|-+... ++.... .++
T Consensus 8 ~W~G~piik~P~Dl~~~qeii~~~kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~--~~~i~~--~~I 83 (202)
T pfam04989 8 RWLGRPIIKLPQDMVAYQELIWELKPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHN--RPAIEA--PRI 83 (202)
T ss_pred EECCEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--HHHHCC--CCE
T ss_conf 1878540249899999999999859998999616766289999999997389987999957644335--435316--876
Q ss_pred CCCHHHHCCC
Q ss_conf 2000000014
Q gi|254780398|r 98 EIIQDDALKV 107 (284)
Q Consensus 98 ~ii~~Dal~~ 107 (284)
++++||-.+.
T Consensus 84 ~lieg~s~d~ 93 (202)
T pfam04989 84 TFIQGSSTDP 93 (202)
T ss_pred EEEECCCCCH
T ss_conf 9997685678
No 206
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=86.88 E-value=0.72 Score=25.74 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=40.5
Q ss_pred HHHHCCCCHHHHHHHH---------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 9997273138999876---------318178999787774657120899999999999863
Q gi|254780398|r 227 QEAFGKRRKTLRQSLK---------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 227 ~~~F~~RRK~l~~~L~---------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
...+..+++.|+..|- +++..++|-.++|+|..++.+|+.+||.+|++.+.+
T Consensus 158 ~~~l~~~~~~IK~~LlDQ~~iaGIGNiyadEiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~~ 218 (283)
T PRK13945 158 KKKLKGRTRSIKTALLDQSIVAGIGNIYADESLFKAGIRPTTEAGTLKKNQLERLREAIVE 218 (283)
T ss_pred HHHHHHCCCCCCEEEECCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9887526754351775188523454999999999859997786030899999999999999
No 207
>PRK04266 fibrillarin; Provisional
Probab=86.77 E-value=1.2 Score=24.27 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=49.3
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 7198999879997589882346775023-5259984255430368878753220012200000001
Q gi|254780398|r 42 SSGSLDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
.+.+.++..||=.|++.|.--..+.... ...|.|||.-++...-|-.....-+| +--|-+||-.
T Consensus 67 ~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R~N-ivPIl~DAr~ 131 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEERKN-IIPILGDARK 131 (226)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCC-CEEEECCCCC
T ss_conf 5675899879995477798488898751796499998270778999999850899-6257546788
No 208
>KOG2352 consensus
Probab=86.64 E-value=0.36 Score=27.61 Aligned_cols=66 Identities=14% Similarity=0.296 Sum_probs=45.2
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH
Q ss_conf 9998-79997589882346775023525998425543036887875322001220000000143155
Q gi|254780398|r 46 LDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK 111 (284)
Q Consensus 46 ~~~~-~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~ 111 (284)
.+.+ .++.+|||.-.|+..+-+-+...|+.+|+++--++..........-..++...|+.+..+++
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED 112 (482)
T ss_pred CHHHCEEEEECCCCCHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCCCCEEEEEECCHHCCCCC
T ss_conf 6545114761588779999998658777422005689999987514567742488980211035787
No 209
>PRK13699 putative methylase; Provisional
Probab=86.55 E-value=2.7 Score=22.21 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.7
Q ss_pred CHHHHHHHHH
Q ss_conf 7678999999
Q gi|254780398|r 218 CLESLKKITQ 227 (284)
Q Consensus 218 ~~~~~~~~~~ 227 (284)
..+.++.+++
T Consensus 149 Pv~L~e~lI~ 158 (227)
T PRK13699 149 PVTSLQPLIE 158 (227)
T ss_pred CHHHHHHHHH
T ss_conf 2999999999
No 210
>PRK11524 putative methyltransferase; Provisional
Probab=86.32 E-value=2.8 Score=22.08 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=7.4
Q ss_pred CHHCCCHHHHHHH
Q ss_conf 7120899999999
Q gi|254780398|r 260 RAENLSIEDFCRI 272 (284)
Q Consensus 260 R~e~Ls~~~~~~L 272 (284)
++|+++.||..+.
T Consensus 252 ~~~~~~~~~~~~~ 264 (284)
T PRK11524 252 VASHYSAEELAKV 264 (284)
T ss_pred HCCCCCHHHHHHH
T ss_conf 3534658899988
No 211
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=86.18 E-value=0.97 Score=24.93 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHC--CCCHHHHHHHHHC------CCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 76789999999972--7313899987631------81789997877746571208999999999998636
Q gi|254780398|r 218 CLESLKKITQEAFG--KRRKTLRQSLKRL------GGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 218 ~~~~~~~~~~~~F~--~RRK~l~~~L~~~------~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
+.+.|..++|.+=. ...|.+.-+|..+ ....+++.+|||++.|+.+|+-+|.-+|.+.+.+.
T Consensus 7 ~~~~f~~ivRI~gtdi~g~K~v~~aLt~I~GIG~~~A~~Ic~~~gid~~~r~g~Lteeei~~i~~~I~~~ 76 (154)
T PTZ00134 7 DSDQFQHILRILNTNVDGREKVTIALTAIKGIGRRFATVVCKQAGVDVTKRAGELTQEEINKIVAIISSP 76 (154)
T ss_pred CHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 7788335154038758999588998532206489999999998098945421649999999999997272
No 212
>KOG2811 consensus
Probab=85.81 E-value=3 Score=21.92 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=48.8
Q ss_pred CCEEEEECCCCCHHHHHHHHCCC-CEEE-EECCCCCCHHHHHH--HHHHHHCCCCCCHHHHCCCCHHHHC---CCCCCEE
Q ss_conf 98799975898823467750235-2599-84255430368878--7532200122000000014315521---3322201
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLGA-RKVI-VIEKDQQFFPILKD--ISSQHPNRLEIIQDDALKVDFEKFF---NISSPIR 120 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~~-~~v~-aiEiD~~~~~~l~~--~~~~~~~~~~ii~~Dal~~d~~~~~---~~~~~~~ 120 (284)
+..++|.|+|.|-||+.+...-. .++. .|=+|+.-...... ....++--++=+..|+-++++..+. ..+.|+-
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dLkL~~i~el~~~~~p~v 262 (420)
T KOG2811 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDLKLNAIPELKNSGKPYV 262 (420)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHEEEEEHHHCCCCCCCCCCCCCCCEE
T ss_conf 62589966870289999999853465799985201202443105552268612403572087638553200045698379
Q ss_pred EEECCCHHHHHHHHHHHHHH
Q ss_conf 12023224678899999852
Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISA 140 (284)
Q Consensus 121 vvgNLPYnIss~Il~~ll~~ 140 (284)
-||-==-..+|++-.+.+.+
T Consensus 263 aisKHLCG~ATDLtLRCl~~ 282 (420)
T KOG2811 263 AISKHLCGAATDLTLRCLLS 282 (420)
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 98422346212367888606
No 213
>KOG3987 consensus
Probab=85.80 E-value=0.55 Score=26.46 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=55.5
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC---CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 999818984336584112398999999997198---99987999758988234677502352599842554303688787
Q gi|254780398|r 13 ILSHYKIIPKKYMGQNFLLDLNILKKIAESSGS---LDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 13 ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~---~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
++.+-.|.---..|--|+-+++--.|....-++ +....+|++|+|.|-+|....... .+|.|-|....+...|+++
T Consensus 75 fms~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk 153 (288)
T KOG3987 75 FMSQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK 153 (288)
T ss_pred HHHHHCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHCCHH-HHHHHHHHHHHHHHHHHHC
T ss_conf 865403333026671698569999999831787558987068861678861001214218-9999987669999998652
No 214
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=85.72 E-value=0.83 Score=25.36 Aligned_cols=33 Identities=27% Similarity=0.552 Sum_probs=28.9
Q ss_pred HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 789997877746571208999999999998636
Q gi|254780398|r 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 247 ~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
..+...+||+++.++.+|+.+|...|.+.++++
T Consensus 31 ~~Ic~~lgi~~~~k~~~Ls~~qi~~i~~~i~~~ 63 (122)
T CHL00137 31 KKILEKANIDPDTRTKDLTDEQIVSIRQIIEEN 63 (122)
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999998498988552629999999999999847
No 215
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=85.67 E-value=2 Score=22.93 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.7
Q ss_pred CHHHHHHHHH
Q ss_conf 7678999999
Q gi|254780398|r 218 CLESLKKITQ 227 (284)
Q Consensus 218 ~~~~~~~~~~ 227 (284)
..+..+++++
T Consensus 167 P~~L~~~~I~ 176 (221)
T pfam01555 167 PEALLERLIL 176 (221)
T ss_pred CHHHHHHHHH
T ss_conf 5999999999
No 216
>pfam01269 Fibrillarin Fibrillarin.
Probab=85.45 E-value=1.6 Score=23.57 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=48.4
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHCC-CC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 7198999879997589882346775023-52-5998425543036887875322001220000000
Q gi|254780398|r 42 SSGSLDGITVIEIGAGPGNLTQMLLTLG-AR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284)
Q Consensus 42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284)
.+.+.++..||=.|++.|.--..+.... +. .|.|||.-++...-|-.....-+| +--|-+||-
T Consensus 68 ~~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R~N-IvPIl~DAr 132 (229)
T pfam01269 68 DIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPN-IVPILEDAR 132 (229)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCC-CEEEECCCC
T ss_conf 56858998799944777985767887228895399997173557899999742799-445766778
No 217
>PRK01103 formamidopyrimidine-DNA glycosylase; Validated
Probab=83.76 E-value=2.7 Score=22.12 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=39.1
Q ss_pred HHCCCCHHHHHHHH---------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHH
Q ss_conf 97273138999876---------31817899978777465712089999999999986
Q gi|254780398|r 229 AFGKRRKTLRQSLK---------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILT 277 (284)
Q Consensus 229 ~F~~RRK~l~~~L~---------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~ 277 (284)
.+..++..++..|- +++..++|-.++|+|..++.+|+.+|+.+|++.+.
T Consensus 149 ~l~~~~~~Ik~~LlDQ~~iaGiGNiyadEiLf~a~IhP~~~~~~Ls~~e~~~L~~~~~ 206 (273)
T PRK01103 149 KLRKKKTAIKPALLDQTIVVGVGNIYADEALFRAGIHPERPAGSLSKARAERLVEAIK 206 (273)
T ss_pred HHHCCCCHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHH
T ss_conf 7643654266762258846035398999999876487135001179999999999999
No 218
>pfam03486 HI0933_like HI0933-like protein.
Probab=82.98 E-value=3.9 Score=21.15 Aligned_cols=62 Identities=26% Similarity=0.386 Sum_probs=48.0
Q ss_pred CHHHHH-HHHHHHHCCCCHHHHHHHHHCCCHH----HHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 767899-9999997273138999876318178----9997877746571208999999999998636
Q gi|254780398|r 218 CLESLK-KITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 218 ~~~~~~-~~~~~~F~~RRK~l~~~L~~~~~~~----~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
+.+.+. .+.+....+..|++.+.|....++. +++..+++++.+..+++-++.-+|++.++.-
T Consensus 270 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~l~~~~~~~l~~~lk~~ 336 (405)
T pfam03486 270 DAEELAARLEKPRGAHPKKSLKNALAGLLPKRLALFLLEQAGIDPDKKLAQLSKKDLAALADLLKAW 336 (405)
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCC
T ss_conf 9999999999998868232399988877589999999997199868863657999999999998669
No 219
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=82.63 E-value=2.3 Score=22.56 Aligned_cols=86 Identities=19% Similarity=0.396 Sum_probs=54.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEEC
Q ss_conf 89998799975898823467750235259984255430368878753220012200000001431552133222011202
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIAN 124 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgN 124 (284)
+.+|.+.+++|+-+|.=|..|++++. .|+||+--+ +.+.| . . .+.++.+..|+.++.+++- +..+ +|.-
T Consensus 208 l~~Gm~aVDLGAaPGGWT~qLv~rg~-~V~AVDnG~-m~~~L---~-~-~~~V~H~~~dgf~f~P~~~---~vdw-lVCD 276 (356)
T PRK11760 208 LASGMRAVDLGACPGGWTYQLVRRGM-FVTAVDNGP-MAESL---M-D-TGQVEHLRADGFKFRPTRK---NVDW-LVCD 276 (356)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCC-EEEEECCCC-CCHHH---H-C-CCCEEEEECCCEEECCCCC---CEEE-EEEE
T ss_conf 16997587558699705899997798-899865876-78757---5-2-8875788146705636998---5208-9970
Q ss_pred C---CHHHHHHHHHHHHHHHC
Q ss_conf 3---22467889999985201
Q gi|254780398|r 125 L---PYNIGTRLLFNWISADT 142 (284)
Q Consensus 125 L---PYnIss~Il~~ll~~~~ 142 (284)
. |.-++. ++.+|+....
T Consensus 277 mvekP~rva~-lm~~Wl~~gw 296 (356)
T PRK11760 277 MVEKPARVAE-LMAQWLVNGW 296 (356)
T ss_pred CCCCHHHHHH-HHHHHHHCCC
T ss_conf 5368899999-9999875560
No 220
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=82.22 E-value=1.8 Score=23.32 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHCC------CHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 78999999997--273138999876318------1789997877746571208999999999998636
Q gi|254780398|r 220 ESLKKITQEAF--GKRRKTLRQSLKRLG------GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 220 ~~~~~~~~~~F--~~RRK~l~~~L~~~~------~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
+.|..+++.+= -...|.+.-+|..++ ...+++.+||+++.|+.+|+.+|.-+|.+.+++.
T Consensus 4 ~~~~~mvRI~gvdIp~~K~i~~ALt~IyGIG~~~A~~Ic~~lgId~~~k~~~Lte~qi~~l~~~i~~~ 71 (149)
T PRK04053 4 EEFRYIVRIANTDLDGTKPVEYALTGIKGIGRRTARAIARKLGLDPHAKLGYLSDEEIEKIEEALENP 71 (149)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 78667586508678999686444111148489999999999189987730749999999999999746
No 221
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=81.92 E-value=4.3 Score=20.91 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=51.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 99999981898433658411239899999999719--8999879997589882346775023525998425543036887
Q gi|254780398|r 10 LKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK 87 (284)
Q Consensus 10 i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~ 87 (284)
.+..|+.|=-.+..-..-+ =+..-.+..+.+... -.+++.+|+||+|+-.-.-.-+...++++++-|.-+.-.+.|+
T Consensus 18 p~~YL~~yy~~~~~~~~~~-~~~~f~l~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~f~~I~lsDy~~~Nr~el~ 96 (261)
T pfam01234 18 PRAYLNTYYKFASGDAAEM-QIVLFFLPNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEVFKEIHLSDYLPQNRDELI 96 (261)
T ss_pred HHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHH
T ss_conf 7999998548887774323-233788999999837787466689984789458888767765071786025576799999
Q ss_pred HHHHHH
Q ss_conf 875322
Q gi|254780398|r 88 DISSQH 93 (284)
Q Consensus 88 ~~~~~~ 93 (284)
+.....
T Consensus 97 kWl~~e 102 (261)
T pfam01234 97 KWLKKE 102 (261)
T ss_pred HHHHCC
T ss_conf 997069
No 222
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase; InterPro: IPR000191 Formamidopyrimidine-DNA glycosylase (3.2.2.23 from EC) (Fapy-DNA glycosylase) (gene fpg) is a bacterial enzyme involved in DNA repair and which excise oxidized purine bases to release 2,6-diamino-4-hydroxy-5N-methylformamido- pyrimidine (Fapy) and 7,8-dihydro-8-oxoguanine (8-OxoG) residues. In addition to its glycosylase activity, FPG can also nick DNA at apurinic/apyrimidinic sites (AP sites). FPG is a monomeric protein of about 32 Kd which binds and require zinc for its activity. The C-terminal region is the zinc binding site in the enzyme where four conserved and essential cysteines are located ..
Probab=81.88 E-value=3.8 Score=21.28 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=43.3
Q ss_pred HHHHHHHCCCCHHHHHHH---------HHCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 999999727313899987---------6318178999787774657120899999999999863
Q gi|254780398|r 224 KITQEAFGKRRKTLRQSL---------KRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 224 ~~~~~~F~~RRK~l~~~L---------~~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
..+..-..+.+|.|++.| -+++.+++|=.++|+|..-|.+|+.+|.-.|.+.+.+
T Consensus 157 ~~l~~~l~~~~r~~K~~LLDQ~~V~G~GNIYADE~LF~A~ihP~~~A~~L~~~~~~~L~~~i~~ 220 (292)
T TIGR00577 157 EYLFEKLAKSKRKIKTALLDQRLVAGLGNIYADEVLFRAGIHPERLANQLSKEECELLHKAIKE 220 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999998740403456865487576510106668998736881010001588899999999999
No 223
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=80.17 E-value=1.5 Score=23.72 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=61.6
Q ss_pred EEEEECCCCCCHHHHHHHHH--HHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHH--HHH--HH------HHHHHH
Q ss_conf 59984255430368878753--2200122000000014315521332220112023224--678--89------999985
Q gi|254780398|r 72 KVIVIEKDQQFFPILKDISS--QHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYN--IGT--RL------LFNWIS 139 (284)
Q Consensus 72 ~v~aiEiD~~~~~~l~~~~~--~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYn--Iss--~I------l~~ll~ 139 (284)
++.+.++|++.+..++++.. +..+.+++..+|+.++..+.. ...+-.||.|.||. ++. .+ +-..+.
T Consensus 262 ~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~--~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK 339 (716)
T PRK11783 262 KFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLP--KGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 339 (716)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCC--CCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 1899959989999999999981998862999567898579877--78982899678522013661468999999999999
Q ss_pred HHCCCCCCCHHHHEEEHHHHHHHHHCCCHH
Q ss_conf 201000000110203344788753012312
Q gi|254780398|r 140 ADTWPPFWESLTLLFQKEVGERITAQKNSP 169 (284)
Q Consensus 140 ~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k 169 (284)
. .-.+|+..++.=-.|.+.++--++..+
T Consensus 340 ~--~f~GW~~~ilT~~~~l~k~lgLra~k~ 367 (716)
T PRK11783 340 K--QFGGWNAALFSSSPELLSCLGLRADKQ 367 (716)
T ss_pred H--HCCCCEEEEEECCHHHHHHCCCCCCCE
T ss_conf 6--589986999978888997529883626
No 224
>TIGR03629 arch_S13P archaeal ribosomal protein S13P. This model describes exclusively the archaeal ribosomal protein S13P. It excludes the homologous eukaryotic 40S ribosomal protein S18 and bacterial 30S ribosomal protein S13.
Probab=79.76 E-value=2.5 Score=22.37 Aligned_cols=32 Identities=13% Similarity=0.329 Sum_probs=21.4
Q ss_pred HHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 78999787774657120899999999999863
Q gi|254780398|r 247 ENLLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 247 ~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
..+++.++|+++.|+.+|+.+|.-+|.+.+++
T Consensus 35 ~~Ic~~~gid~~~k~~~Lt~~ei~~i~~~i~~ 66 (144)
T TIGR03629 35 RAIARKLGVDPNAKLGYLDDEEIEKLEEAVEN 66 (144)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999909993536041999999999999985
No 225
>PTZ00146 fibrillarin; Provisional
Probab=79.07 E-value=3.7 Score=21.32 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=50.7
Q ss_pred HHHHHHH---HCCCCCCCEEEEECCCCCHHHHHHHHCC-CC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 9999999---7198999879997589882346775023-52-5998425543036887875322001220000000
Q gi|254780398|r 35 ILKKIAE---SSGSLDGITVIEIGAGPGNLTQMLLTLG-AR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284)
Q Consensus 35 i~~~iv~---~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284)
++.-|.. .+.+.++..||=+|++.|.--..+...- +. .|+|||.-++....|-.....-+| +--|-+||-
T Consensus 120 LAAaIl~Gl~~i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R~N-IvPIleDAr 194 (296)
T PTZ00146 120 LAAAIYGGVASIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRRTN-IVPIIEDAR 194 (296)
T ss_pred HHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCC-CEEEECCCC
T ss_conf 899997696444437999899851467986556665017886199997064668899999722798-335777789
No 226
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=79.03 E-value=4.6 Score=20.73 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCCC--CCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf 1989--9987999758988234677502--35259984255430368878753220-01220000000143
Q gi|254780398|r 43 SGSL--DGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284)
Q Consensus 43 ~~~~--~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284)
+++. +++.||++-+-||+=|-+|++. +-.-|+|+|....=+..|..+.+... -++.|++-|.-+|.
T Consensus 71 L~p~Gn~~~~vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~ 141 (284)
T TIGR00446 71 LEPEGNEKERVLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFG 141 (284)
T ss_pred ECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHH
T ss_conf 17787688879997408896489999986588518997376341066786555621003332413763001
No 227
>KOG4589 consensus
Probab=78.53 E-value=2.9 Score=21.95 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCC-CC-EEEEECC
Q ss_conf 8999879997589882346775023-52-5998425
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLG-AR-KVIVIEK 78 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~-~~-~v~aiEi 78 (284)
+.++++|||+|+-+|+-|.--.++. ++ .|..|++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 688877998167887189999886288742888743
No 228
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=78.16 E-value=2.3 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=29.7
Q ss_pred CHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 1789997877746571208999999999998636
Q gi|254780398|r 246 GENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 246 ~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
+..+++.+|+++++|+.+|+-+|.-+|.+.+.+.
T Consensus 30 a~~I~~~~gi~~~~r~~~Lteeei~~ir~~i~~~ 63 (121)
T COG0099 30 AKEICKKAGIDPDKRVGELTEEEIERLRDAIQNK 63 (121)
T ss_pred HHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9999999198866764529999999999999862
No 229
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=77.90 E-value=2.1 Score=22.91 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=86.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEE-CCCCCCHHHHHHHHHHHH-CC--
Q ss_conf 43365841123989999999971989998799975898823467750235259984-255430368878753220-01--
Q gi|254780398|r 21 PKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVI-EKDQQFFPILKDISSQHP-NR-- 96 (284)
Q Consensus 21 p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~ai-EiD~~~~~~l~~~~~~~~-~~-- 96 (284)
+++.+-+---.++.+.+.++......+++.+++--+|+|.+.....-.+. ++++. +++..++.-.+..+.++. ..
T Consensus 177 ~~~p~~~p~~~~p~~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~-~~~g~gd~~~~~~~g~~~~l~~~~~~~~~ 255 (358)
T TIGR01177 177 DRRPFFKPGSLDPKLARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGA-KPIGCGDLDWKLVEGARLNLEHYGIEDKV 255 (358)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCC-CCCCCCHHHHHHHCCCHHHHHHCCCCCCE
T ss_conf 54643256555546777776542024675100422266603323333211-00024403567642521113330554315
Q ss_pred CCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 220000000143155213322201120232246788999
Q gi|254780398|r 97 LEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLF 135 (284)
Q Consensus 97 ~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~ 135 (284)
+.+..+|+..+....-...+.--.++...||..++..-.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~g~~~~~~~ 294 (358)
T TIGR01177 256 FSVKRGDAKDLPLRLPGLDESVDAIATDPPYGRSTTAAG 294 (358)
T ss_pred EEEEECCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 676403300111003531011222212565453111221
No 230
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=77.50 E-value=4.8 Score=20.61 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=48.6
Q ss_pred CCEEEEECCCCCHHHHHHHHCC--CC-EEEEECCCCCCHHHHHHHHHHHH---CCCCCCHHHHCCCCH
Q ss_conf 9879997589882346775023--52-59984255430368878753220---012200000001431
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLTLG--AR-KVIVIEKDQQFFPILKDISSQHP---NRLEIIQDDALKVDF 109 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~~~--~~-~v~aiEiD~~~~~~l~~~~~~~~---~~~~ii~~Dal~~d~ 109 (284)
...|.=||.|+=-||.-++.+. .. .++.+|+|+......++.....+ .++.++.+|++....
T Consensus 122 p~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~ 189 (277)
T pfam03059 122 PSRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTT 189 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCC
T ss_conf 74489963788613899998850887314331278899999999998655300472899526444444
No 231
>KOG2360 consensus
Probab=77.16 E-value=3.8 Score=21.28 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=53.6
Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHH-HCCCCCCHHHHCCC
Q ss_conf 99971989998799975898823467750235--25998425543036887875322-00122000000014
Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQH-PNRLEIIQDDALKV 107 (284)
Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~-~~~~~ii~~Dal~~ 107 (284)
.+..++..++..|+.+=+-+|.=|..++.... .++.|.|.|.+-+..+++..... ...++.++|||+..
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360 205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred HHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 365438999882355414665321129988622487213234168899999999871787453201444477
No 232
>PRK04148 hypothetical protein; Provisional
Probab=76.79 E-value=6.2 Score=19.91 Aligned_cols=71 Identities=25% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHH-HHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 8999999997198999879997589882346-77502352599842554303688787532200122000000014315
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQ-MLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~-~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
+.+++.|.+.....++-.|+|+|-|-=.-.- .|.+.++ .|+++++++..++..++ ..+..+.+|..+=++.
T Consensus 2 ~~iaeyI~~~y~~~~~~kIvEvGIGf~~~vA~~L~e~g~-dv~~~Din~~aV~~a~~------~Gl~~v~DDif~P~l~ 73 (135)
T PRK04148 2 DTIAEYIARNYPHLKNGKIAELGIGFYFKVAKKLKESGF-DVIVIDINKKAVEKAKK------LGLNAFVDDIFNPNLE 73 (135)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCC-CEEEEECCHHHHHHHHH------CCCCEEECCCCCCCHH
T ss_conf 069999998542112873899923666789999987499-88999576554322123------2876375158899888
No 233
>KOG4058 consensus
Probab=76.73 E-value=4 Score=21.10 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=51.9
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHH--HHHHHHHCCCCCCHHHHCCCCHHHH
Q ss_conf 7198999879997589882346775023525998425543036887--8753220012200000001431552
Q gi|254780398|r 42 SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILK--DISSQHPNRLEIIQDDALKVDFEKF 112 (284)
Q Consensus 42 ~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~--~~~~~~~~~~~ii~~Dal~~d~~~~ 112 (284)
.+.-.+.-..+++|.|.|-+-.+-++.+..+-+.+|.++-++.+.+ ..-....+.......|.-++|+.+.
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058 67 LLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HCCCCCCCCEEECCCCCCEEEHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 7148998817852589852446666507776774330389999999999987425331022321100445556
No 234
>PRK10083 putative dehydrogenase; Provisional
Probab=76.33 E-value=6.4 Score=19.83 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=35.9
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHH-HHHHHHC--CCCEEEEECCCCCCHHHHHHH
Q ss_conf 999971989998799975898823-4677502--352599842554303688787
Q gi|254780398|r 38 KIAESSGSLDGITVIEIGAGPGNL-TQMLLTL--GARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 38 ~iv~~~~~~~~~~VlEIGpG~G~L-T~~Ll~~--~~~~v~aiEiD~~~~~~l~~~ 89 (284)
..+..+++.++++|+=+|+|+..+ .-.++++ +++.|++++.++.=.+.+++.
T Consensus 151 ~~~~~~~~~~g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~ 205 (339)
T PRK10083 151 NVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKES 205 (339)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC
T ss_conf 9998618999988999587659999999999856997899937989999999971
No 235
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=75.41 E-value=6.3 Score=19.89 Aligned_cols=129 Identities=17% Similarity=0.245 Sum_probs=83.2
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHH
Q ss_conf 999999719899987999758988234677502352-599842554303688787532--20012200000001431552
Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKF 112 (284)
Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~ 112 (284)
++-.++.+.+..-...++||.|.|-++-++++..|. +++.+-. +-.+...+|+... ...|++-|-=|.-+-.+++
T Consensus 138 ~~LL~~~A~L~~V~~lIDVGGGIGDI~AAl~~~FP~L~~T~~NL-P~A~DLV~EN~A~KG~ADR~~~~A~D~Y~E~YP~- 215 (306)
T TIGR02716 138 IELLLKRAKLDDVKKLIDVGGGIGDIAAALLKAFPELDVTLLNL-PSALDLVRENVAEKGLADRIRGVAVDIYKESYPE- 215 (306)
T ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC-
T ss_conf 99999875163132543338887789999997377523231205-4055677665541451004663156503387577-
Q ss_pred CCCCCCEEEEECCCHHH----HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 13322201120232246----78899999852010000001102033447887530123123323454320
Q gi|254780398|r 113 FNISSPIRIIANLPYNI----GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTG 179 (284)
Q Consensus 113 ~~~~~~~~vvgNLPYnI----ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q 179 (284)
+..-+++-+=|.. ||-++.|-... .+.+.+-.++ +-....|..++|-.||-.+-
T Consensus 216 ----~DAVLF~RILY~~N~Ql~T~l~~KAyDA--l~SGGR~LIL-------DMVI~DP~~PNyDYL~HY~~ 273 (306)
T TIGR02716 216 ----ADAVLFSRILYSANEQLSTILLKKAYDA--LRSGGRLLIL-------DMVIDDPENPNYDYLSHYLL 273 (306)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCEEEEE-------EEEECCCCCCCHHHHHHHHH
T ss_conf ----1165677887644678999999988752--2578807865-------43431856777146899998
No 236
>KOG2920 consensus
Probab=75.11 E-value=4.1 Score=21.02 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 23989999999971---9899987999758988234677502352599842554303
Q gi|254780398|r 30 LLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFF 83 (284)
Q Consensus 30 L~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~ 83 (284)
+-.-..++.+.+.+ -...++.|||+|||.|-........++..+++.+.....+
T Consensus 96 ecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920 96 ECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ECHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCCCHHHHHHCCCEEEEEECCHHHE
T ss_conf 337999999998753336744755686378645641666640353233473351124
No 237
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.62 E-value=7.5 Score=19.40 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=36.8
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH--HCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 999997198999879997589882346775--02352599842554303688787
Q gi|254780398|r 37 KKIAESSGSLDGITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 37 ~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
....+..+..++++|+=+|+|+..|.-.++ ..++.+|+++|.++.=.+.+++.
T Consensus 110 ~~~~~~~~~~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~ 164 (280)
T TIGR03366 110 MAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred HHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
T ss_conf 9999971789999899990786899999999984998799991998999999973
No 238
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=73.46 E-value=7.4 Score=19.44 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHH
Q ss_conf 8988234677502--35259984255430368878753220012200000001431552133222011202322467889
Q gi|254780398|r 56 AGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRL 133 (284)
Q Consensus 56 pG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~I 133 (284)
+|.|.+...+++. ....+++||.|+..++.+++. + ..++.||+.+-+.-.-.....--.+|...|-.-.+-.
T Consensus 4 ~G~g~~G~~la~~L~~~~~v~vId~d~~~~~~~~~~-----~-~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~ 77 (115)
T pfam02254 4 IGYGRVGRSLAEELREGGPVVVIDKDPERVEELREE-----G-VPVVVGDATDEEVLEEAGIEDADAVVAATGDDEANIL 77 (115)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC-----C-CEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 878889999999998089999999987998778866-----9-8699995688667876192028799996298499999
Q ss_pred HH
Q ss_conf 99
Q gi|254780398|r 134 LF 135 (284)
Q Consensus 134 l~ 135 (284)
+.
T Consensus 78 ~~ 79 (115)
T pfam02254 78 IV 79 (115)
T ss_pred HH
T ss_conf 99
No 239
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=72.28 E-value=8.1 Score=19.20 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=51.1
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC-C-EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 89999999971989998799975898823467750235-2-59984255430368878753220
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA-R-KVIVIEKDQQFFPILKDISSQHP 94 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~-~v~aiEiD~~~~~~l~~~~~~~~ 94 (284)
+.-+--.+..+++.++.+||++=+-||.=|-.|++.-+ + +|+|+++|..=+..+.+......
T Consensus 257 D~Saq~va~~L~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLG 320 (487)
T TIGR00563 257 DASAQWVATLLDPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLG 320 (487)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 1689999997388988747731148457047677424797208988621257889999998618
No 240
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=71.83 E-value=4 Score=21.14 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred EEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH--HHCCCCCCHHHHCCCCHHHHCCCCCCEE-EEECCC
Q ss_conf 9997589882346775023-52599842554303688787532--2001220000000143155213322201-120232
Q gi|254780398|r 51 VIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKDISSQ--HPNRLEIIQDDALKVDFEKFFNISSPIR-IIANLP 126 (284)
Q Consensus 51 VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~~~~~--~~~~~~ii~~Dal~~d~~~~~~~~~~~~-vvgNLP 126 (284)
|-+||+-.|.|..+|++.+ +..++|.|+.+.-.+.+++.... ..+++++..||.|+.=.+. ...... +.|
T Consensus 1 vADIGtDHayLpi~L~~~g~~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~---e~vd~ivIAG--- 74 (204)
T pfam04816 1 LADIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEEL---DLIDVIVIAG--- 74 (204)
T ss_pred CCEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCC---CCCCEEEEEC---
T ss_conf 9710545089999999779987799961667499999999997599753899977842205867---7657799948---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 246788999998520
Q gi|254780398|r 127 YNIGTRLLFNWISAD 141 (284)
Q Consensus 127 YnIss~Il~~ll~~~ 141 (284)
+....+..+|+..
T Consensus 75 --MGG~lI~~IL~~~ 87 (204)
T pfam04816 75 --MGGTLIADILEQG 87 (204)
T ss_pred --CCHHHHHHHHHHC
T ss_conf --6899999999818
No 241
>KOG2793 consensus
Probab=70.56 E-value=6 Score=20.02 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99879997589882346775023525998425543036887875
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDIS 90 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~ 90 (284)
...+|||+|.|+| +-..++......-+..+--++....|+.+.
T Consensus 86 ~~~~vlELGsGtg-lvG~~aa~~~~~~v~ltD~~~~~~~L~~~~ 128 (248)
T KOG2793 86 KYINVLELGSGTG-LVGILAALLLGAEVVLTDLPKVVENLKFNR 128 (248)
T ss_pred CCEEEEEECCCCC-HHHHHHHHHHCCEECCCCCHHHHHHHHHHH
T ss_conf 6405899668755-899999987366451277502678888866
No 242
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic; InterPro: IPR010109 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH . This entry includes both mitochondrial and peroxisomal forms of citrate synthase. Peroxisomal forms of the enzyme, recognized by the C-terminal targeting motif SKL, act in the glyoxylate cycle. Eukaryotic homologs include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans (Emericella nidulans).; GO: 0004108 citrate (Si)-synthase activity, 0044262 cellular carbohydrate metabolic process.
Probab=70.17 E-value=3.3 Score=21.62 Aligned_cols=120 Identities=15% Similarity=0.306 Sum_probs=64.9
Q ss_pred EEECCCHH-HHHHH----HHHHHHHHCCCCCCCHHHH-------EEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 12023224-67889----9999852010000001102-------033447887530123123323454320133201200
Q gi|254780398|r 121 IIANLPYN-IGTRL----LFNWISADTWPPFWESLTL-------LFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMF 188 (284)
Q Consensus 121 vvgNLPYn-Iss~I----l~~ll~~~~~~~~~~~~vl-------mvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~ 188 (284)
|++.+=.+ +|.+= +++-|.+..-.|+.-++|+ ..|+|||.|=. |.++-+- + |+.++
T Consensus 287 ~v~e~G~~n~t~eqlKdy~WktLnsG~VVPGYGHaVLRkTDPRY~cQREFALk~L--PdDplFk-------L---VS~ly 354 (430)
T TIGR01793 287 VVKEVGEDNLTEEQLKDYVWKTLNSGKVVPGYGHAVLRKTDPRYICQREFALKHL--PDDPLFK-------L---VSQLY 354 (430)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHCC--CCCHHHH-------H---HHHHH
T ss_conf 8775178877476789999976058954257665202688988431288883317--8961568-------8---64101
Q ss_pred CCCCCEE-------CCCCCCCE--EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH-HHCCCCCC
Q ss_conf 0110000-------10578757--88730125885534767899999999727313899987631817899-97877746
Q gi|254780398|r 189 DISPHVF-------FPSPKVTS--TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLL-HQAGIETN 258 (284)
Q Consensus 189 ~V~~~~F-------~P~PkVdS--~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l-~~~~i~~~ 258 (284)
+|-|..- +|=|+||| .|+. +.+--.+..|..+ +|. ..++| ++++.=++ +.+|++.-
T Consensus 355 ki~PgiLtE~GK~KNPwPNVDaHSGVLL-----qyyGlTE~~yYTV---LFG-----VSRAl-G~lsQLiwdRa~GlPlE 420 (430)
T TIGR01793 355 KIVPGILTELGKVKNPWPNVDAHSGVLL-----QYYGLTEARYYTV---LFG-----VSRAL-GVLSQLIWDRALGLPLE 420 (430)
T ss_pred CCCCCCEECCCCCCCCCCCCCCHHHHHH-----HHCCCCCCCCHHH---HHH-----HHHHH-HHHHHHHHHHHCCCCCC
T ss_conf 0168500047875786778752011676-----4024000021034---334-----66887-44368999865689856
Q ss_pred CCHHCCCHH
Q ss_conf 571208999
Q gi|254780398|r 259 LRAENLSIE 267 (284)
Q Consensus 259 ~R~e~Ls~~ 267 (284)
||-..|.|
T Consensus 421 -RPKS~ste 428 (430)
T TIGR01793 421 -RPKSFSTE 428 (430)
T ss_pred -CCCCCCCC
T ss_conf -88665346
No 243
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=69.77 E-value=2.1 Score=22.88 Aligned_cols=222 Identities=16% Similarity=0.154 Sum_probs=91.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHH---------HHHHHHC-CCCCCHHHHCCCCHHHHC-
Q ss_conf 99987999758988234677502352-59984255430368878---------7532200-122000000014315521-
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKD---------ISSQHPN-RLEIIQDDALKVDFEKFF- 113 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~---------~~~~~~~-~~~ii~~Dal~~d~~~~~- 113 (284)
...|+|++||||.|..=-.++..|+- .|.. ..+.---.||+- .....++ .++| .+|-+-|+.+.-
T Consensus 584 ~~AD~vvDiGPgAG~hGGevVa~G~~~~~~~-~~~SlTG~YL~G~~~I~vP~~R~~~~g~r~l~~--~gA~~nNLK~i~v 660 (956)
T TIGR00630 584 RAADYVVDIGPGAGEHGGEVVASGTPEEILA-NKDSLTGQYLSGKKKIEVPKERRKGNGKRVLTL--KGARENNLKNITV 660 (956)
T ss_pred HHCCEEEECCCCCCCCCCEEEEECCHHHHHC-CCCCCHHHHCCCCEECCCCCCCCCCCCCEEEEE--EECCCCCCCCCEE
T ss_conf 5579689858777604767888089799852-878712452078510367631125889559998--4201056402117
Q ss_pred --CCCCCEEEEE-------CCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEE-HHHHHHHH----HCCCHHHHHHHHHHHC
Q ss_conf --3322201120-------23224678899999852010000001102033-44788753----0123123323454320
Q gi|254780398|r 114 --NISSPIRIIA-------NLPYNIGTRLLFNWISADTWPPFWESLTLLFQ-KEVGERIT----AQKNSPHYGRLSVLTG 179 (284)
Q Consensus 114 --~~~~~~~vvg-------NLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQ-kEvA~Rl~----a~pg~k~Yg~LSv~~q 179 (284)
+.+.-+.|-| -|=+.|=-+.+.+.|......+ .-+--+| -|-=+|++ ++.|---.|=-.-.+.
T Consensus 661 ~iPLG~~t~iTGVSGSGKSTLind~L~~~~~~~L~~~~~~~---g~~~~I~G~e~lDKvi~iDQsPIGRTPRSNPATYtg 737 (956)
T TIGR00630 661 SIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTEP---GRYKDIEGLEHLDKVIEIDQSPIGRTPRSNPATYTG 737 (956)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 74077179997445874577799999999999985276456---652036300023846886577434346886432013
Q ss_pred CCCCEEEECC-----------CCCCEECCCCCCCE---------EEEEECCCCCCC---CC---CHHHHH-HHHHHHHCC
Q ss_conf 1332012000-----------11000010578757---------887301258855---34---767899-999999727
Q gi|254780398|r 180 WRTKATMMFD-----------ISPHVFFPSPKVTS---------TVIHFIPHLNPI---PC---CLESLK-KITQEAFGK 232 (284)
Q Consensus 180 ~~~~v~~~~~-----------V~~~~F~P~PkVdS---------~vi~l~pk~~~~---~~---~~~~~~-~~~~~~F~~ 232 (284)
.|.+|+.+|- -++=||+ |.. .+|+++-+.-|. +| .=+.|. ..+.. ..
T Consensus 738 vFd~IR~LFA~~PeAk~RGY~~GRFSFN----VkGGRCE~C~GDG~ikiEMhFLPDVYV~CevC~GkRYN~eTLEv--~Y 811 (956)
T TIGR00630 738 VFDEIRELFAETPEAKARGYKPGRFSFN----VKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEV--KY 811 (956)
T ss_pred CCHHHHHHHHCCCHHHHCCCCCCCEEEC----CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE--EE
T ss_conf 4305777640585378738899861465----88884324268854788513488820317877884037640168--84
Q ss_pred CCHHHHHHHHHCCCH---------------HHHHHCCCC---CCCCHHCCCH--HHHHHHHHHHHHC
Q ss_conf 313899987631817---------------899978777---4657120899--9999999998636
Q gi|254780398|r 233 RRKTLRQSLKRLGGE---------------NLLHQAGIE---TNLRAENLSI--EDFCRITNILTDN 279 (284)
Q Consensus 233 RRK~l~~~L~~~~~~---------------~~l~~~~i~---~~~R~e~Ls~--~~~~~L~~~l~~~ 279 (284)
+.|.+.-.|..-..+ +.|-+.|+. ...=+-.||= .|=++||..|+..
T Consensus 812 kGK~IadVLdMtveEA~eFF~~~P~I~rKL~~L~dVGLgY~~LGQpatTLSGGEAQRiKLA~ELskr 878 (956)
T TIGR00630 812 KGKNIADVLDMTVEEAREFFEAVPKISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR 878 (956)
T ss_pred CCCEEHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 2871123315866899887422605899999987624210204756664231589999999870787
No 244
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=67.92 E-value=10 Score=18.62 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHC---------------------CCCCC-CEEEEECCCCCHH--HHHHHHCC-CC-EEEEECCCC
Q ss_conf 41123989999999971---------------------98999-8799975898823--46775023-52-599842554
Q gi|254780398|r 27 QNFLLDLNILKKIAESS---------------------GSLDG-ITVIEIGAGPGNL--TQMLLTLG-AR-KVIVIEKDQ 80 (284)
Q Consensus 27 QnFL~d~~i~~~iv~~~---------------------~~~~~-~~VlEIGpG~G~L--T~~Ll~~~-~~-~v~aiEiD~ 80 (284)
.||-+|...++++.+.. --..| +-.|+||+|.-.- |.+++++- +. .|+-|+.|+
T Consensus 27 dnf~~DR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~La~e~GIrQFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DP 106 (268)
T pfam04672 27 DNYPVDREAGDALLAAFPGARAIARANRAFMHRAVRHLAEEAGIRQFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDP 106 (268)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCC
T ss_conf 58899999999999978877999999999999999999875495057760569999997214667329986399988982
Q ss_pred CCHHHHHHHHHHHH-CCCCCCHHHHCCC
Q ss_conf 30368878753220-0122000000014
Q gi|254780398|r 81 QFFPILKDISSQHP-NRLEIIQDDALKV 107 (284)
Q Consensus 81 ~~~~~l~~~~~~~~-~~~~ii~~Dal~~ 107 (284)
--+.+.+.++...+ ++..++++|..+-
T Consensus 107 vvlaHaraLL~~~~~~~t~~v~aDlrdp 134 (268)
T pfam04672 107 IVLTHARALLTSTPEGATDYIHADVRDP 134 (268)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCH
T ss_conf 7999999995689877469997777798
No 245
>KOG3806 consensus
Probab=67.86 E-value=3 Score=21.88 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=37.7
Q ss_pred EEE-HHHHHHHHHCCCHH--HHHHHHHHHCCCCCEEEECCCCCCEE
Q ss_conf 033-44788753012312--33234543201332012000110000
Q gi|254780398|r 153 LFQ-KEVGERITAQKNSP--HYGRLSVLTGWRTKATMMFDISPHVF 195 (284)
Q Consensus 153 mvQ-kEvA~Rl~a~pg~k--~Yg~LSv~~q~~~~v~~~~~V~~~~F 195 (284)
|++ .|||++.-++.+.+ +|..||--..+||+-.++.+|+..-|
T Consensus 100 l~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr~ 145 (177)
T KOG3806 100 LVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKRF 145 (177)
T ss_pred ECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCEE
T ss_conf 4698999999866108899898999889998873472541378657
No 246
>pfam11202 DUF2983 Protein of unknown function (DUF2983). This bacterial family of proteins has no known function.
Probab=65.29 E-value=11 Score=18.30 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC
Q ss_conf 39899999999719899987999758988234677502
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~ 68 (284)
+|++.++.|.+.- ...+-..++==.|.|++|.+|.+.
T Consensus 124 ID~~AL~~Il~~H-~~~~ivFVDGWTGKGaI~~EL~~a 160 (353)
T pfam11202 124 IDENALRYILARH-PPESIVFVDGWTGKGAITRELSRA 160 (353)
T ss_pred CCHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 5899999999868-987749970787721889999999
No 247
>KOG2940 consensus
Probab=64.45 E-value=7.1 Score=19.58 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=42.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 9987999758988234677502352599842554303688787532200122000000014315
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
....++.||+|.|++.+.|...+..+++-++-...+++-.+...... -.+.-..+|--..|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~-i~~~~~v~DEE~Ldf~ 134 (325)
T KOG2940 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPS-IETSYFVGDEEFLDFK 134 (325)
T ss_pred HCCCEEECCCCHHHHHHHHHHCCHHHEEEEECCHHHHHHHHCCCCCC-EEEEEEECCHHCCCCC
T ss_conf 07520440655446568877525134066404167999753268985-3799972551015655
No 248
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.48 E-value=12 Score=18.09 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=48.1
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 1989998799975898823467750235-25998425543036887875322001220000000
Q gi|254780398|r 43 SGSLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284)
Q Consensus 43 ~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284)
..+.+++.||=.|+-.|.--..+..... ..+.|||.-++....|-.....-+| +--|-+||-
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~N-i~PIL~DA~ 134 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPN-IIPILEDAR 134 (231)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCC-CEEEECCCC
T ss_conf 776999878995036798576777604787089999644469999999874787-400201368
No 249
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=62.75 E-value=4 Score=21.11 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=17.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCC
Q ss_conf 999879997589882346775023
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLG 69 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~ 69 (284)
...|.|+|+|||.|..=-.++..+
T Consensus 555 ~~AD~iIDlGPgAG~~GGeiv~~G 578 (944)
T PRK00349 555 RAADYIVDIGPGAGVHGGEVVASG 578 (944)
T ss_pred HHCCEEEEECCCCCCCCCEEEEEE
T ss_conf 528778971787777788799974
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=62.24 E-value=11 Score=18.36 Aligned_cols=54 Identities=24% Similarity=0.507 Sum_probs=33.5
Q ss_pred EEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCC--CCCCHHHHCC
Q ss_conf 99975898823467750235--25998425543036887875322001--2200000001
Q gi|254780398|r 51 VIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNR--LEIIQDDALK 106 (284)
Q Consensus 51 VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~--~~ii~~Dal~ 106 (284)
++++|+|.|..+ .+..... ..+++++....+....+..... .+. +..+.+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALG 109 (257)
T ss_pred EEEEECCCCHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHCC-CCCCCEEEEECCCCC
T ss_conf 588603854689-9999735785799936888999999986300-456635767604213
No 251
>KOG2782 consensus
Probab=61.85 E-value=6.8 Score=19.68 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHH
Q ss_conf 39899999999719899987999758988234677502352-59984255430368
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPI 85 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~ 85 (284)
.-+..++..++.+.+.++...++.--|.|.-|+.|+++++. ++.|.+.|+-....
T Consensus 27 HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~L 82 (303)
T KOG2782 27 HVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKL 82 (303)
T ss_pred CCCEEHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHCCCHHHHHH
T ss_conf 77545665898727778864788750577420788874727664000458689999
No 252
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=61.56 E-value=9.7 Score=18.73 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=43.4
Q ss_pred HHHHHHHCCCCHHHHHHHH---------HCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999997273138999876---------3181789997877746571208999999999998636
Q gi|254780398|r 224 KITQEAFGKRRKTLRQSLK---------RLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 224 ~~~~~~F~~RRK~l~~~L~---------~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
..+...+.++++.++..|- +++-.++|-.++|.|..-+.+|+..++..|++.+.+-
T Consensus 145 ~~l~~~l~~~~~~IK~~LLDQ~vvaGvGNIYa~E~Lf~agI~P~~~a~~l~~~~~~~l~~~i~~v 209 (273)
T COG0266 145 EYLAEKLAKKKRRIKTALLDQKVVAGVGNIYADEILFRAGIHPARPAGDLSLAQLALLHEAIKDV 209 (273)
T ss_pred HHHHHHHHCCCCCHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999873276416777640770303417888889987379854670302789999999999999
No 253
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=61.27 E-value=13 Score=17.84 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHHCCCCCCCEEEEECCCCCHH-HHHHHH-CCCCEEEEECCCCCCHHHHHHH
Q ss_conf 99971989998799975898823-467750-2352599842554303688787
Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNL-TQMLLT-LGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~L-T~~Ll~-~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
.++.+++.++++|+=+|+|+..| +-.+++ .++.+|++++.++.=.+.+++.
T Consensus 168 ~~~~~~~~~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~l 220 (358)
T TIGR03451 168 AVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF 220 (358)
T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
T ss_conf 98640799998899967376999999999983991899991988999999965
No 254
>KOG2198 consensus
Probab=60.99 E-value=14 Score=17.81 Aligned_cols=82 Identities=23% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCCCCCHHHHHHHHH----------HCCCCCCCEEEEECCCCCHHHHHHHHCCC-C----EEEEECCCCCCHHHHHHHHH
Q ss_conf 411239899999999----------71989998799975898823467750235-2----59984255430368878753
Q gi|254780398|r 27 QNFLLDLNILKKIAE----------SSGSLDGITVIEIGAGPGNLTQMLLTLGA-R----KVIVIEKDQQFFPILKDISS 91 (284)
Q Consensus 27 QnFL~d~~i~~~iv~----------~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-~----~v~aiEiD~~~~~~l~~~~~ 91 (284)
|.|++.+.-+-.|-. .+++.+++.||+.=+-+|.=|..|++..+ . .|+|=+.|..=...|.....
T Consensus 125 ~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198 125 HGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred CHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 26766421445211242442264020226799844420138984489999997237777736753457889999999985
Q ss_pred HHH-CCCCCCHHHHCCCC
Q ss_conf 220-01220000000143
Q gi|254780398|r 92 QHP-NRLEIIQDDALKVD 108 (284)
Q Consensus 92 ~~~-~~~~ii~~Dal~~d 108 (284)
..+ .++.+.+.|+..++
T Consensus 205 ~l~~~~~~v~~~~~~~~p 222 (375)
T KOG2198 205 RLPSPNLLVTNHDASLFP 222 (375)
T ss_pred CCCCCCEEEECCCCEECC
T ss_conf 269843334312110056
No 255
>PRK05867 short chain dehydrogenase; Provisional
Probab=60.29 E-value=13 Score=17.98 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=64.5
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHH----CCC-C
Q ss_conf 99987999758988---23467750235259984255430368878753220012200000001431-552----133-2
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKF----FNI-S 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~----~~~-~ 116 (284)
.+++.+|=-|.+.| ++.+.+++.++ +|....+|.+-.+.+.+......++...+.+|+.+.+- ..+ ... +
T Consensus 7 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~ei~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G 85 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 8999899979565999999999998699-999997988999999999984599199998369999999999999999959
Q ss_pred CCEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22011202322467889-------99998520100000011020334478875301
Q gi|254780398|r 117 SPIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.--.+|-|-=....+++ ..+.+.-+ + ..+|++-++++..|..+
T Consensus 86 ~iDiLVnNAG~~~~~~~~~~~~e~w~~~~~vN-----l-~g~f~~~~~~~~~m~~~ 135 (253)
T PRK05867 86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTN-----V-TGVFLTAQAAAKAMVKQ 135 (253)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 98599989977888750109999999999997-----5-99999999999999981
No 256
>KOG1298 consensus
Probab=59.49 E-value=13 Score=18.00 Aligned_cols=32 Identities=44% Similarity=0.534 Sum_probs=24.4
Q ss_pred EEEEECCCCC--HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 7999758988--23467750235259984255430
Q gi|254780398|r 50 TVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQF 82 (284)
Q Consensus 50 ~VlEIGpG~G--~LT~~Ll~~~~~~v~aiEiD~~~ 82 (284)
.|+=||+|-+ +|-..|.+.+ ++|+.||+|-..
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdG-RrVhVIERDl~E 80 (509)
T KOG1298 47 DVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSE 80 (509)
T ss_pred CEEEECCCCHHHHHHHHHHHCC-CEEEEEECCCCC
T ss_conf 4799888622789999985078-579999634556
No 257
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.69 E-value=15 Score=17.57 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=44.4
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=-|.+.| ++.+.+++.++ +|+...++..-.+.+.+......++...+.+|+.+.+
T Consensus 8 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~ 72 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVEEIKANGGEAIALKADVLDKE 72 (278)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 8999899958674899999999998799-8999979889999999999845990999982489999
No 258
>PRK09422 alcohol dehydrogenase; Provisional
Probab=58.21 E-value=15 Score=17.52 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEECCCCCCHHHHHHH
Q ss_conf 99999971989998799975898-823467750-2352599842554303688787
Q gi|254780398|r 36 LKKIAESSGSLDGITVIEIGAGP-GNLTQMLLT-LGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 36 ~~~iv~~~~~~~~~~VlEIGpG~-G~LT~~Ll~-~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
+...++.+++.++++|+=+|+|. |.+.-.+++ ....+|++++..+.=.+.+++.
T Consensus 151 ~~~al~~~~~~~G~~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~k~~~a~~l 206 (338)
T PRK09422 151 TYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV 206 (338)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
T ss_conf 88999984899998899968868999999999980898699998999999999972
No 259
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=58.16 E-value=11 Score=18.36 Aligned_cols=37 Identities=38% Similarity=0.482 Sum_probs=29.1
Q ss_pred CCCCCCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCC
Q ss_conf 989998799975898823467--75023525998425543
Q gi|254780398|r 44 GSLDGITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQ 81 (284)
Q Consensus 44 ~~~~~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~ 81 (284)
.+..+..|+=||.|+|.||-+ +.+.+. +|+.+|..+.
T Consensus 13 ~p~~gkkV~IIGaGPaGlsAA~~aa~~G~-~v~viEk~~~ 51 (350)
T PRK12770 13 PPPTGKKVAIIGAGPAGLAAAGYLACLGH-EVHVYDKLPE 51 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCC
T ss_conf 99897989999955889999999997899-8599953696
No 260
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=58.09 E-value=15 Score=17.50 Aligned_cols=113 Identities=16% Similarity=0.077 Sum_probs=62.9
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC-HHH----HCCC-
Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143-155----2133-
Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-FEK----FFNI- 115 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d-~~~----~~~~- 115 (284)
..+++.+|=.|.+.| ++.+.|++.++ +|+.+.+++.-.+.+.+.+.....++..+.+|+.+.+ ... ....
T Consensus 3 ~L~gK~alITGgs~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (253)
T PRK12826 3 DLMGRVALVTGAARGIGRAIAVRFAADGA-DVIVVDICGQAAAATAELVAAAGGKARAYQVDVRDRAALKALVAAGVERF 81 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 88998899948977899999999998799-89999898899999999998509958999951799999999999999983
Q ss_pred CCCEEEEECCCHHHH-------HHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHH
Q ss_conf 222011202322467-------8899999852010000001102033447887530
Q gi|254780398|r 116 SSPIRIIANLPYNIG-------TRLLFNWISADTWPPFWESLTLLFQKEVGERITA 164 (284)
Q Consensus 116 ~~~~~vvgNLPYnIs-------s~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a 164 (284)
+..-.+|-|--+... .+-+.+.+.-+. ...+++-++++..|..
T Consensus 82 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vNl------~~~~~~~~~~~~~m~~ 131 (253)
T PRK12826 82 GRLDILVANAGIFPLTPFAELDDEDWDRVIDVNL------TGTFLLTQAALPALKR 131 (253)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_conf 9987899899889999815599999999999875------6664337874699997
No 261
>KOG2912 consensus
Probab=57.97 E-value=15 Score=17.49 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=43.4
Q ss_pred EEECCCCCHHHHHHHH-CC-CCEEEEECCCCCCHHHHHHHHHHHH--CCCCCCHHHHCCCCHHHHCCCC---CCEEEEEC
Q ss_conf 9975898823467750-23-5259984255430368878753220--0122000000014315521332---22011202
Q gi|254780398|r 52 IEIGAGPGNLTQMLLT-LG-ARKVIVIEKDQQFFPILKDISSQHP--NRLEIIQDDALKVDFEKFFNIS---SPIRIIAN 124 (284)
Q Consensus 52 lEIGpG~G~LT~~Ll~-~~-~~~v~aiEiD~~~~~~l~~~~~~~~--~~~~ii~~Dal~~d~~~~~~~~---~~~~vvgN 124 (284)
++||.|.-.+- .|+. +. ...-+|.|+|..-++.+++...++. ..+.+++-.+-+.-+.+....+ .-..+..|
T Consensus 107 iDIgtgasci~-~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912 107 IDIGTGASCIY-PLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred EECCCCHHHHH-HHHHHHHCCCEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEEECCHHHCCHHHHCCCCCCEEEEEECC
T ss_conf 20267534667-86400021632366412102355454240003660103577845333201213226765324688328
Q ss_pred CCHHHH
Q ss_conf 322467
Q gi|254780398|r 125 LPYNIG 130 (284)
Q Consensus 125 LPYnIs 130 (284)
.||.=.
T Consensus 186 PPFfe~ 191 (419)
T KOG2912 186 PPFFEN 191 (419)
T ss_pred CCHHHC
T ss_conf 703303
No 262
>pfam04339 DUF482 Protein of unknown function, DUF482. This family contains several proteins of uncharacterized function.
Probab=57.86 E-value=15 Score=17.48 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCC-CCCHHCCCHHHHHHHHHHHHH
Q ss_conf 347678999999997273138999876318178999787774-657120899999999999863
Q gi|254780398|r 216 PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIET-NLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 216 ~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~-~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
+.+.+.|+.|+..+=+.|||+|++--+ .+.+.||.. ..+..++++++|-..++.+.+
T Consensus 167 N~~Y~~FddFL~~l~SrKRKnIrkER~------~v~~~gI~~~~l~G~~I~~~~w~~fy~fY~~ 224 (370)
T pfam04339 167 NRGYASFDDFLAALNSRKRKNIRKERR------KVAEQGITIRWLTGDEITPEHWDAFYRFYQD 224 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 799898899998735767889999999------9998697799972788999999999999999
No 263
>PRK06181 short chain dehydrogenase; Provisional
Probab=57.84 E-value=15 Score=17.48 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=41.3
Q ss_pred CCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 48 GITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 48 ~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
|+.+|=-|++.| ++.+.+++.++ +|+.+.+++.-.+.+.+.......+...+.+|..+.+
T Consensus 1 GKv~lITGassGIG~a~A~~la~~Ga-~vvl~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~ 63 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-RLVLAARNEERLASLAQELANYGAEALVVATDVSDAE 63 (263)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 99999958101999999999998799-8999988999999999999954996799980799999
No 264
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=57.80 E-value=15 Score=17.47 Aligned_cols=48 Identities=33% Similarity=0.457 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCHHH--HHHHHCCCC-EEEEECCC
Q ss_conf 9899999999719899987999758988234--677502352-59984255
Q gi|254780398|r 32 DLNILKKIAESSGSLDGITVIEIGAGPGNLT--QMLLTLGAR-KVIVIEKD 79 (284)
Q Consensus 32 d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT--~~Ll~~~~~-~v~aiEiD 79 (284)
.+.++++-.+....--...|+=+|+|+-.|| ++|++.+|. +|..+|.-
T Consensus 5 srAi~~~~~~~l~~~~e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~ 55 (283)
T TIGR00292 5 SRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERK 55 (283)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 488998889988755010667987897466899999842998069998511
No 265
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=57.69 E-value=15 Score=17.46 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=34.8
Q ss_pred HHHHCCCCCCCEEEEECCCCCHHH-HHHHH-CCCCEEEEECCCCCCHHHHHHH
Q ss_conf 999719899987999758988234-67750-2352599842554303688787
Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPGNLT-QMLLT-LGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G~LT-~~Ll~-~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
.++.++..++++|+=+|+|+..+. -.+++ .++.+|++++.+++-.+.+++.
T Consensus 161 a~~~~~~~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~ 213 (343)
T PRK09880 161 AAHQAGDLQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQM 213 (343)
T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC
T ss_conf 66524775698899984776799999999986998799997978999999972
No 266
>PRK06346 consensus
Probab=57.60 E-value=16 Score=17.45 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=45.0
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.++=-|.+.| ++++.+++.++ +|+.+.+|..-.+.+.+.+....++...+.+|+.+.+
T Consensus 3 l~gKv~lITGgs~GIG~a~a~~la~~Ga-~V~i~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 67 (251)
T PRK06346 3 LKGKVAIVTGAASGMGKSIAELFAKEGA-KVVVADLNLERAQKVVEEITSNGGTAIAVVANVTKQE 67 (251)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 8998899947578899999999998799-8999979899999999999963990899977889899
No 267
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=57.44 E-value=11 Score=18.32 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=18.6
Q ss_pred CEEEEECCCCCHHHH-HHHH-CCCCEEEEECCC
Q ss_conf 879997589882346-7750-235259984255
Q gi|254780398|r 49 ITVIEIGAGPGNLTQ-MLLT-LGARKVIVIEKD 79 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~-~Ll~-~~~~~v~aiEiD 79 (284)
..|+=||.|.|.||- +||. +|. .|+.+|--
T Consensus 2 ~~VvVIGaGIaGLTaAALLA~~G~-~Vtl~E~h 33 (499)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQH 33 (499)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCC-CEEEEEEE
T ss_conf 706998187267899999985399-67999740
No 268
>PRK11749 putative oxidoreductase; Provisional
Probab=57.28 E-value=16 Score=17.45 Aligned_cols=38 Identities=34% Similarity=0.420 Sum_probs=30.1
Q ss_pred CCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCH
Q ss_conf 899987999758988234--677502352599842554303
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFF 83 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~ 83 (284)
...+..|-=||.|+..|| ..|++.+. +|+.+|..+..=
T Consensus 137 ~~~gkkVAIIGaGPAGLsAA~~Lar~G~-~VtVfE~~~~~G 176 (460)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAG 176 (460)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCC
T ss_conf 6789989998967899999999997698-479970478787
No 269
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=56.43 E-value=16 Score=17.39 Aligned_cols=48 Identities=31% Similarity=0.387 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCC
Q ss_conf 39899999999719899987999758988234--67750235259984255
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKD 79 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD 79 (284)
+.+.++++..+.........|+=+|+|+-.|| .+|++.+. +|..+|..
T Consensus 13 itraI~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ 62 (262)
T COG1635 13 ITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERK 62 (262)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCC-EEEEEEEE
T ss_conf 789999999999987543267998768505789999986796-49999730
No 270
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=56.19 E-value=15 Score=17.51 Aligned_cols=37 Identities=38% Similarity=0.555 Sum_probs=31.1
Q ss_pred CCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCC
Q ss_conf 899987999758988234--67750235259984255430
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~ 82 (284)
...++.|-=||.|++.|| .+|+..|. .|+.+|..+..
T Consensus 190 ~~tGKkVAIIGaGPAGLsaAy~L~~~Gh-~VTVfE~~~~~ 228 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQA 228 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCC
T ss_conf 8889979996837899999999997799-06998158888
No 271
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=56.06 E-value=11 Score=18.42 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=25.7
Q ss_pred EEEEECCCCCHHHHHHH-HCCCC-EEEEECCCCCCH
Q ss_conf 79997589882346775-02352-599842554303
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLL-TLGAR-KVIVIEKDQQFF 83 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll-~~~~~-~v~aiEiD~~~~ 83 (284)
.|+=||+|.|.||-++. .+... .|+.+|..+.+-
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 899999448999999999853999889994289888
No 272
>PRK06198 short chain dehydrogenase; Provisional
Probab=55.85 E-value=17 Score=17.27 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=46.6
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
...++.+|=-|.+.| ++.+.|++.+++.|+...+|....+.+.+.......+...+.+|+.+.+
T Consensus 3 ~L~gK~alVTGas~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~ 69 (268)
T PRK06198 3 RLDGKIALVTGGTQGLGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALGAKAVFVQADLAKVE 69 (268)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 8899889995857789999999999879938999629888999999999954996799982689999
No 273
>pfam04072 LCM Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.
Probab=55.73 E-value=17 Score=17.26 Aligned_cols=81 Identities=19% Similarity=0.103 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHH-CCCCCCC-EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-HHHH----HCCCCCCHHH
Q ss_conf 398999999997-1989998-7999758988234677502352599842554303688787-5322----0012200000
Q gi|254780398|r 31 LDLNILKKIAES-SGSLDGI-TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDI-SSQH----PNRLEIIQDD 103 (284)
Q Consensus 31 ~d~~i~~~iv~~-~~~~~~~-~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~-~~~~----~~~~~ii~~D 103 (284)
+-...++..+.. +.-.++. .|+-+|+|.-+.-..|... +..+.-+|+|..-+-.+++. +.+. +.+.+.+..|
T Consensus 52 ~Rt~~~D~~v~~fl~~~~~~~qVV~LGaGlDTr~~Rl~~~-~~~~~~~evD~p~v~~~k~~~l~~~~~~~~~~~~~v~~D 130 (175)
T pfam04072 52 ARTRFFDDFLRAFLAAHPGARQVVILGAGLDTRAYRLDWP-AGGVRWFEVDLPEVIEFKRRLLPEAGARPPARRRYVAVD 130 (175)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCC-CCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 9999999999999985969878999696433547664698-899459994778899999999876368898675884688
Q ss_pred HCCCCHHHH
Q ss_conf 001431552
Q gi|254780398|r 104 ALKVDFEKF 112 (284)
Q Consensus 104 al~~d~~~~ 112 (284)
+.+.+|.+.
T Consensus 131 l~~~~w~~~ 139 (175)
T pfam04072 131 LRDDDWLDA 139 (175)
T ss_pred CCCHHHHHH
T ss_conf 764057999
No 274
>PRK08163 salicylate hydroxylase; Provisional
Probab=55.64 E-value=12 Score=18.11 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCHHHHHHHH--CCCCEEEEECCCCCCHH
Q ss_conf 998799975898823467750--23525998425543036
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFP 84 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD~~~~~ 84 (284)
....|+=||+|++.||-+++- .+ -.|+.+|..+.+.+
T Consensus 3 ~~~~V~IVGaGiaGL~lA~~L~r~G-i~v~V~Er~~~~~~ 41 (396)
T PRK08163 3 HVTPVLIVGGGIGGLAAALALARQG-IKVKLLEQAAEIGE 41 (396)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEECCCCCCCC
T ss_conf 9984999897889999999999789-99999917998887
No 275
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.52 E-value=17 Score=17.24 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.6
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=.|.+.| ++.+.+++.++ +|+.+.+++.-.+.+.+.......+...+.+|..+.+
T Consensus 3 L~gK~~lITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~ 67 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAQCAALGGEAEVYAANVTDEE 67 (253)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 8998899948877899999999998799-8999979999999999999965994899982479999
No 276
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.46 E-value=17 Score=17.23 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHH----CCC-CC
Q ss_conf 9987999758988---23467750235259984255430368878753220012200000001431-552----133-22
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKF----FNI-SS 117 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~----~~~-~~ 117 (284)
+++.+|=.|.+.| ++.+.+++.++ +|+.+.+++.-.+.+.+.+.....++..+.+|+.+.+- .++ ... +.
T Consensus 4 ~~Kv~lITGgs~GIG~a~a~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-RVVIYDSNEEAAEALAEELRAAGGEAALLVFDVTDEAAVRALIEAAVERFGG 82 (246)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 998899938975899999999998799-9999979999999999999965994899997289999999999999997499
Q ss_pred CEEEEECCCHH-------HHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 20112023224-------6788999998520100000011020334478875301
Q gi|254780398|r 118 PIRIIANLPYN-------IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 118 ~~~vvgNLPYn-------Iss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.-.+|-|-=.+ ++..-+.+.+.-+. ...+.+-++++..|...
T Consensus 83 iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl------~~~~~~~~~~~~~m~~~ 131 (246)
T PRK05653 83 LDVLVNNAGITRDALLPRMSEEDWDRVIDTNL------TGTFNVCRAALPPMRKA 131 (246)
T ss_pred CCEEEECCCCCCCCCCHHCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_conf 86999899999998801399999999999860------88999999999999984
No 277
>PRK06139 short chain dehydrogenase; Provisional
Probab=54.83 E-value=17 Score=17.17 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=44.9
Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+..+++.+|=-|++.| ++.+.+++.++ +|+.+.+|+.-.+.+.+.......+...+.+|+.+.+
T Consensus 2 g~L~gKvvlITGASsGIG~aiA~~~A~~Ga-~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~ 68 (324)
T PRK06139 2 GPLHGAVVVITGASSGIGRATAEAFARRGA-RLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHAD 68 (324)
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 985997799938254999999999998799-8999989999999999999954994899976678857
No 278
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=54.67 E-value=5.6 Score=20.21 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=17.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCC
Q ss_conf 8999879997589882346775023
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLG 69 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~ 69 (284)
+...|+|+++|||-|.---.++..+
T Consensus 875 i~~aD~iIDlGP~gG~~GG~iva~G 899 (1809)
T PRK00635 875 VKVADYVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred HHHCCEEEECCCCCCCCCCEEEEEE
T ss_conf 8648889974886677887799864
No 279
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=54.51 E-value=6.6 Score=19.77 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=12.9
Q ss_pred HHHCCCCCCCCHHCCCHHH-HHHHHHHHHHCCC
Q ss_conf 9978777465712089999-9999999863646
Q gi|254780398|r 250 LHQAGIETNLRAENLSIED-FCRITNILTDNQD 281 (284)
Q Consensus 250 l~~~~i~~~~R~e~Ls~~~-~~~L~~~l~~~~~ 281 (284)
+.++|+ .+.+++.||- +.+|.=.|.+..|
T Consensus 300 l~~aGV---I~~~DM~~Ev~l~KL~wlLGq~~D 329 (347)
T TIGR00519 300 LLQAGV---IGGEDMLPEVALVKLMWLLGQYSD 329 (347)
T ss_pred HHHHCC---CCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 987046---588987531454556776179978
No 280
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=54.19 E-value=18 Score=17.10 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=64.8
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH-H----CC-CCC
Q ss_conf 9987999758988---2346775023525998425543036887875322001220000000143155-2----13-322
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEK-F----FN-ISS 117 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~-~----~~-~~~ 117 (284)
+++.+|=-|.+.| ++.+.+++.++ +|....+|++-.+.+.+......++...+.+|+.+.+--+ . .. .+.
T Consensus 2 ~gKvalITG~s~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~d~~~v~~~v~~~~~~~G~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 519999968576899999999998799-9999979889999999999953992899994489999999999999997599
Q ss_pred CEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 2011202322467889-------99998520100000011020334478875301
Q gi|254780398|r 118 PIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 118 ~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.-.+|.|-=.+...++ ..+.+.-+ + ...+.+.++++..|..+
T Consensus 81 iDilvnnAg~~~~~~~~~~~~~~w~~~~~vN-----l-~g~~~~~~~~~p~m~~~ 129 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAIN-----L-TGALHMHHAVLPGMVER 129 (250)
T ss_pred CCEEEECCCCCCCCCCHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 9799989888999890349999999999998-----2-99999999999999974
No 281
>KOG1562 consensus
Probab=53.75 E-value=14 Score=17.70 Aligned_cols=86 Identities=13% Similarity=0.250 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHH---------HHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHHHHHH
Q ss_conf 3365841123989---------9999999719---89998799975898823467750235-259984255430368878
Q gi|254780398|r 22 KKYMGQNFLLDLN---------ILKKIAESSG---SLDGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 22 ~k~lGQnFL~d~~---------i~~~iv~~~~---~~~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~~l~~ 88 (284)
+..+||-+..|.. -...|..++. +.+-+.|+=||-|.|..-+..++... .++..+|+|...++.-++
T Consensus 84 s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~ 163 (337)
T KOG1562 84 SATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQ 163 (337)
T ss_pred HHHHCCEEEECCEEECCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHH
T ss_conf 65322267307824777533200554333263445789874799944884130113103460106754336789999998
Q ss_pred HHH----HHH-CCCCCCHHHHCCC
Q ss_conf 753----220-0122000000014
Q gi|254780398|r 89 ISS----QHP-NRLEIIQDDALKV 107 (284)
Q Consensus 89 ~~~----~~~-~~~~ii~~Dal~~ 107 (284)
-+. .+. .++.++-||...+
T Consensus 164 y~p~la~gy~~~~v~l~iGDG~~f 187 (337)
T KOG1562 164 YLPTLACGYEGKKVKLLIGDGFLF 187 (337)
T ss_pred HHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 738875367897148995568999
No 282
>PRK05866 short chain dehydrogenase; Provisional
Probab=53.60 E-value=18 Score=17.05 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECC
Q ss_conf 8844799999981898433---658411239899999999719899987999758988---2346775023525998425
Q gi|254780398|r 5 NKSHSLKTILSHYKIIPKK---YMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEK 78 (284)
Q Consensus 5 ~~~~~i~~ll~~~~~~p~k---~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEi 78 (284)
|+-.-|.+-+...++||-. .+|-.+.-++ -...|+.+|=-|.+.| ++.+.+++.|+ +|+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P----------~dL~GKvaLITGassGIG~aiA~~la~~Ga-~Vvl~~R 72 (290)
T PRK05866 4 RPLRRLTDQLTLAGMRPPISPQLLPNRPPRTP----------VDLTGKRILLTGASSGIGEAAAEKFARRGA-TVVAVAR 72 (290)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----------CCCCCCEEEECCCCCHHHHHHHHHHHHCCC-EEEEEEC
T ss_conf 71678888888850688889755678999949----------789999899908130999999999998699-8999989
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-H----HCCC-CCCEEEEECCCHHHHHHH
Q ss_conf 54303688787532200122000000014315-5----2133-222011202322467889
Q gi|254780398|r 79 DQQFFPILKDISSQHPNRLEIIQDDALKVDFE-K----FFNI-SSPIRIIANLPYNIGTRL 133 (284)
Q Consensus 79 D~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-~----~~~~-~~~~~vvgNLPYnIss~I 133 (284)
+.+-.+.+.+......++...+.+|..+.+-- . .... +.--.+|-|-=..+..++
T Consensus 73 ~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiLVNNAG~~~~~~~ 133 (290)
T PRK05866 73 RKDLLDAVADRITAAGGDAMAIPCDLSDLDAVDALVADVEERIGGVDILINNAGRSIRRPL 133 (290)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH
T ss_conf 9999999999999649908999778898999999999999985998889975766678742
No 283
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.56 E-value=19 Score=16.94 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=44.3
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
-.+++.+|=-|.+.| ++.+.+++.++ +|..+.++..-.+.+.+.......+...+.+|..+.+
T Consensus 3 sL~gKvalITGas~GIG~aiA~~la~~Ga-~V~l~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~ 68 (238)
T PRK07666 3 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARSEENLKAVAKEVEAEGVKAVIATADVSDYE 68 (238)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf 99999899916377899999999998799-8999989999999999999955992799993079999
No 284
>PRK07677 short chain dehydrogenase; Provisional
Probab=52.09 E-value=19 Score=16.90 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=43.3
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+++.+|=-|.+.| ++.+.|++.++ +|+...+|..-.+.+.+......+++..+.+|..+.+
T Consensus 2 ~gK~alVTGgs~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~ 65 (254)
T PRK07677 2 KEKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPD 65 (254)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 529899958767899999999998799-9999969999999999999856990999980389999
No 285
>KOG0163 consensus
Probab=52.02 E-value=19 Score=16.89 Aligned_cols=172 Identities=12% Similarity=0.163 Sum_probs=93.8
Q ss_pred CCCHHHHHH-----HHHCCCCCCCCCCCC----CCCCHHHHHHHHHHCCCCCCCEEE--EECCCCCHHHHHHHHCCCC-E
Q ss_conf 884479999-----998189843365841----123989999999971989998799--9758988234677502352-5
Q gi|254780398|r 5 NKSHSLKTI-----LSHYKIIPKKYMGQN----FLLDLNILKKIAESSGSLDGITVI--EIGAGPGNLTQMLLTLGAR-K 72 (284)
Q Consensus 5 ~~~~~i~~l-----l~~~~~~p~k~lGQn----FL~d~~i~~~iv~~~~~~~~~~Vl--EIGpG~G~LT~~Ll~~~~~-~ 72 (284)
|+|++|..+ +++|+ -|+|||- |-+-+...+.|...-- ....|+ |-|+|.---|.++++--|. .
T Consensus 98 NPY~~I~~lYs~etIK~Y~---GkSLGq~~PHvFAIADKa~RdMr~~k~--SQSIIVSGESGAGKTEstK~vLrYLces~ 172 (1259)
T KOG0163 98 NPYQEIDGLYSPETIKEYR---GKSLGQLPPHVFAIADKAYRDMRVYKL--SQSIIVSGESGAGKTESTKAVLRYLCESW 172 (1259)
T ss_pred CCHHHCCCCCCHHHHHHHC---CCCCCCCCCCEEEECHHHHHHHHHHHH--CCCEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 5121033224878898853---776567898245432678899999864--24079955787885355899999999604
Q ss_pred EEEECCCCCCHHH--HHHHHHH---HHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHH------HHHH
Q ss_conf 9984255430368--8787532---200122000000014315521332220112023224678899999------8520
Q gi|254780398|r 73 VIVIEKDQQFFPI--LKDISSQ---HPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGTRLLFNW------ISAD 141 (284)
Q Consensus 73 v~aiEiD~~~~~~--l~~~~~~---~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss~Il~~l------l~~~ 141 (284)
-+|=+|+.++.+. +-+.|.. ..|+=.--.|-|.++.+.+- -.|+|- ++|.-+|.+- ....
T Consensus 173 gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk------~~VvGG---yvSHYLLEkSRiC~Qaa~ER 243 (1259)
T KOG0163 173 GSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDK------GQVVGG---YVSHYLLEKSRICRQAAEER 243 (1259)
T ss_pred CCCCCHHHHHHCCCHHHHHHCCCHHHCCCCHHHCCCEEEEEECCC------CCEECH---HHHHHHHHHHHHHHHHHCCC
T ss_conf 777837777760271888834630101577122012179997587------854110---46688887718988510134
Q ss_pred CCCCCCCHHHHEEE------HHHHHHHH-HCCCHHHHHHHH-HHHCCCCCEEEECCCCCCEECCCC
Q ss_conf 10000001102033------44788753-012312332345-432013320120001100001057
Q gi|254780398|r 142 TWPPFWESLTLLFQ------KEVGERIT-AQKNSPHYGRLS-VLTGWRTKATMMFDISPHVFFPSP 199 (284)
Q Consensus 142 ~~~~~~~~~vlmvQ------kEvA~Rl~-a~pg~k~Yg~LS-v~~q~~~~v~~~~~V~~~~F~P~P 199 (284)
++ ++.+| -+.-++|. ++|. +|..|+ =.+++|.+.+.-..+|.+-+.|.-
T Consensus 244 NY-------HiFY~LiAGas~dl~~kL~L~~pd--~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~ 300 (1259)
T KOG0163 244 NY-------HIFYQLIAGASPDLRKKLSLGKPD--DFRYLKRGCTQYFANAKTEQKIPGNRKSKNH 300 (1259)
T ss_pred CH-------HHHHHHHCCCCHHHHHHHCCCCCH--HHHHHHCCHHHHCCCCCHHHCCCCCCCCCCC
T ss_conf 22-------578999728988899875359921--4447750302312574111028533468520
No 286
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=50.72 E-value=10 Score=18.54 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=98.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEC--CCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9843365841123989999999971989998799975--89882346775023525998425543036887875322001
Q gi|254780398|r 19 IIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIG--AGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNR 96 (284)
Q Consensus 19 ~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIG--pG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~ 96 (284)
..|-..||==|=.|+.+++.|++.+++. ++.-+-|| --.=.|-++|... ..+|-.=. .+++..-+ ++....-
T Consensus 291 Y~pGDALGVw~~Ndp~LV~~iL~~L~~~-~~~~Vt~~KQ~~~~~l~~AL~~~--fELT~~t~--~~~~~yA~-~~~~~~L 364 (628)
T TIGR01931 291 YEPGDALGVWYKNDPALVKEILELLNLD-PDEKVTVGKQGKVIPLKEALISH--FELTQLTK--PLVKAYAE-LTGNEEL 364 (628)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCEEEECCCCCEEHHHHHHHHC--CCHHCCCH--HHHHHHHH-HHHHHHH
T ss_conf 6256530456488989999999970889-66606862467641488986405--76010487--89999998-7656310
Q ss_pred CCCCH-HHHCCCCHHHHCCCCCCEEEEE--CCC--HHHHHHHHHHHHH---------HHCCCCCCCHHHHEE---EHHHH
Q ss_conf 22000-0000143155213322201120--232--2467889999985---------201000000110203---34478
Q gi|254780398|r 97 LEIIQ-DDALKVDFEKFFNISSPIRIIA--NLP--YNIGTRLLFNWIS---------ADTWPPFWESLTLLF---QKEVG 159 (284)
Q Consensus 97 ~~ii~-~Dal~~d~~~~~~~~~~~~vvg--NLP--YnIss~Il~~ll~---------~~~~~~~~~~~vlmv---QkEvA 159 (284)
-.|+. +|-- .+..+.....=..+|- -.| .+.|++=++.+|. +......-.+.|++| .++.-
T Consensus 365 ~~l~~P~~~~--~L~~y~~~~~~~D~~~ny~~Pap~~l~a~~li~lLRPL~PRLYSIaSSq~ev~dEVHlTVg~V~y~~~ 442 (628)
T TIGR01931 365 KALIAPEDKE--KLKAYIANTPLVDLVRNYDYPAPADLDAEQLISLLRPLTPRLYSIASSQAEVDDEVHLTVGVVRYEAE 442 (628)
T ss_pred HHHHCCCCHH--HHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEEC
T ss_conf 7560787558--99999735987899722478998635979999974778851121888986568806887668898205
Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECC
Q ss_conf 875301231233234543201332012000110000105787578873012
Q gi|254780398|r 160 ERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIP 210 (284)
Q Consensus 160 ~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~p 210 (284)
-|.-+-.. . |.|+-.++---. -.+|.-+...|.=|-..|.=||=+=|
T Consensus 443 G~~r~Gga-S--~fLA~rl~~gd~-v~vyve~N~nFRLP~d~dtPiIMIGp 489 (628)
T TIGR01931 443 GRARLGGA-S--GFLAERLEEGDT-VKVYVERNDNFRLPEDPDTPIIMIGP 489 (628)
T ss_pred CEEEECCC-H--HHHHHHCCCCCE-EEEEEEECCCCCCCCCCCCCEEEECC
T ss_conf 64774410-5--778865088976-77887517788888888978787368
No 287
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=50.68 E-value=20 Score=16.76 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=83.9
Q ss_pred EEECCCCCHHHHHHHHCC------CCEEEEECC--CCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHH------HCCCCC
Q ss_conf 997589882346775023------525998425--543036887875322001220000000143155------213322
Q gi|254780398|r 52 IEIGAGPGNLTQMLLTLG------ARKVIVIEK--DQQFFPILKDISSQHPNRLEIIQDDALKVDFEK------FFNISS 117 (284)
Q Consensus 52 lEIGpG~G~LT~~Ll~~~------~~~v~aiEi--D~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~------~~~~~~ 117 (284)
++.=+|-|.+-.-+=+.+ .+.|.+.|+ |+..+...+..|.. ..++..+|+.+++..+ ..+-
T Consensus 2 idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~~---~~~~~~~DI~~i~~~~~~~~~~~Pd~-- 76 (425)
T TIGR00675 2 IDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFGN---DEKVPFGDITKISPSDLLRHIAIPDF-- 76 (425)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCC---CCEECCCCCCCCCCCCCCCCCCCCCE--
T ss_conf 4542551357899997410141113788720166877899999976478---84206776333660115001248867--
Q ss_pred CEEEEECCC---HHHHHHHHHHHHHHHCCCCCCCHHHHEEEHH--------------HHHHHHHCCCHHHHHH-HHHHHC
Q ss_conf 201120232---2467889999985201000000110203344--------------7887530123123323-454320
Q gi|254780398|r 118 PIRIIANLP---YNIGTRLLFNWISADTWPPFWESLTLLFQKE--------------VGERITAQKNSPHYGR-LSVLTG 179 (284)
Q Consensus 118 ~~~vvgNLP---YnIss~Il~~ll~~~~~~~~~~~~vlmvQkE--------------vA~Rl~a~pg~k~Yg~-LSv~~q 179 (284)
-.++|=-| |+++.... ....+.+--.+.++.+|-. =..+|+.... ++.|+ ++|+++
T Consensus 77 -D~L~gGFPCQ~FS~AG~~~----~~~GF~dED~RGtLFFe~~RilK~KkP~~FllENVkgL~~hd~-~~~G~Tf~vI~~ 150 (425)
T TIGR00675 77 -DILLGGFPCQPFSIAGKRK----GELGFEDEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDK-SQRGRTFKVIIE 150 (425)
T ss_pred -EEEECCCCCCHHHHHCCCC----CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHCCCCC-CCCCCHHHHHHH
T ss_conf -8996389971344641167----6688656677775289989999851895788443611017886-134527899999
Q ss_pred C----CCCEEEECC-CCCCEECC-CCCCCEEEEEECCC
Q ss_conf 1----332012000-11000010-57875788730125
Q gi|254780398|r 180 W----RTKATMMFD-ISPHVFFP-SPKVTSTVIHFIPH 211 (284)
Q Consensus 180 ~----~~~v~~~~~-V~~~~F~P-~PkVdS~vi~l~pk 211 (284)
. =|+|.+ + |=-.++|= .|+=-..|.-.=.|
T Consensus 151 ~Le~lGY~v~~--~~VLNa~dFGNvPQ~ReRiyIvG~r 186 (425)
T TIGR00675 151 TLEELGYKVEY--KEVLNAKDFGNVPQNRERIYIVGFR 186 (425)
T ss_pred HHHHCCCEEEH--HHHHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 99873887733--6466166517876650589999851
No 288
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=50.51 E-value=19 Score=16.84 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=12.5
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHH
Q ss_conf 99997198999879997589882346
Q gi|254780398|r 38 KIAESSGSLDGITVIEIGAGPGNLTQ 63 (284)
Q Consensus 38 ~iv~~~~~~~~~~VlEIGpG~G~LT~ 63 (284)
+..+..++.+ |.+ +|-..|-+|-
T Consensus 74 ~~l~~~Gi~P-d~v--~GhSlGE~aA 96 (298)
T smart00827 74 RLWRSWGVRP-DAV--VGHSLGEIAA 96 (298)
T ss_pred HHHHHCCCCC-CEE--EECCHHHHHH
T ss_conf 9999859987-778--6557989999
No 289
>PRK07201 short chain dehydrogenase; Provisional
Probab=48.97 E-value=21 Score=16.59 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=56.0
Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-----HHCC-
Q ss_conf 9899987999758988---234677502352599842554303688787532200122000000014315-----5213-
Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFN- 114 (284)
Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-----~~~~- 114 (284)
+...|+.+|=-|++.| ++...|++.|+ +|+++-++..-.+.+.+......++...+.+|+.+.+-- ....
T Consensus 372 g~L~GKvalITGASSGIG~A~A~~LA~~GA-~Vvl~AR~~e~Le~v~~ei~~~Gg~a~~~~~DVtd~~~v~~lv~~i~~~ 450 (663)
T PRK07201 372 GPLEGKHVIITGASSGIGRATAIKVAEAGA-TVFALARDGEKLDELVAEIRARGGQAHAYTCDLTDSASVEHTVKDILGR 450 (663)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 887994799938875999999999998799-8999989999999999999955991899996279999999999999996
Q ss_pred CCCCEEEEECCCHHHHH
Q ss_conf 32220112023224678
Q gi|254780398|r 115 ISSPIRIIANLPYNIGT 131 (284)
Q Consensus 115 ~~~~~~vvgNLPYnIss 131 (284)
.+.--.+|.|-=..|..
T Consensus 451 ~G~IDVLVNNAG~si~~ 467 (663)
T PRK07201 451 HGHVDYLVNNAGRSIRR 467 (663)
T ss_pred CCCCCEEEECCCCCCCC
T ss_conf 79988899896446757
No 290
>PRK12831 putative oxidoreductase; Provisional
Probab=48.83 E-value=21 Score=16.58 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 899987999758988234--67750235259984255430368
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFPI 85 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~~~ 85 (284)
...+..|-=||.|+..|| ..|++++. .|+.+|.++..=..
T Consensus 137 ~~~gkkVAVIGsGPAGLsaA~~La~~G~-~VtVfE~~~~~GG~ 178 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKKGY-DVTIFEALHEPGGV 178 (464)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCCCCE
T ss_conf 7899989998976899999999997699-17998278888980
No 291
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=48.61 E-value=22 Score=16.56 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=31.5
Q ss_pred CCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCHH
Q ss_conf 899987999758988234--6775023525998425543036
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFP 84 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~~ 84 (284)
...++.|-=||.|+..|| ..|++.+. .|+.+|..+..=.
T Consensus 134 ~~tgkkVAVIGaGPAGLsaA~~La~~G~-~VtVfE~~~~~GG 174 (560)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYQLRRLGH-AVTIFEAGPKLGG 174 (560)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCCCC
T ss_conf 7789989998977899999999997698-5899676788898
No 292
>PRK06847 hypothetical protein; Provisional
Probab=48.45 E-value=17 Score=17.23 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=26.9
Q ss_pred CCEEEEECCCCCHHHHHHHH--CCCCEEEEECCCCCCH
Q ss_conf 98799975898823467750--2352599842554303
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFF 83 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD~~~~ 83 (284)
-..|+=||.|++.||-+++- .+. .|+.+|.++...
T Consensus 4 ~kkV~IVGaG~aGL~lA~~L~~~Gi-~v~V~E~~~~~~ 40 (375)
T PRK06847 4 VKKVLIVGGGIGGMSAAIALRKAGI-SVDLVEIDPEWR 40 (375)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCC
T ss_conf 9879999966899999999996799-999990899988
No 293
>PRK07208 hypothetical protein; Provisional
Probab=47.91 E-value=22 Score=16.53 Aligned_cols=37 Identities=38% Similarity=0.533 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCCCHHH
Q ss_conf 98799975898823467--750235259984255430368
Q gi|254780398|r 48 GITVIEIGAGPGNLTQM--LLTLGARKVIVIEKDQQFFPI 85 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~--Ll~~~~~~v~aiEiD~~~~~~ 85 (284)
.+.|+=||+|+..||-+ |.+.+ ..|+.+|.+.+.-..
T Consensus 3 ~kkv~IiGAG~~GL~aA~~L~~~g-~~v~vlEk~~~vGGl 41 (474)
T PRK07208 3 KKSVVIIGAGPAGLTAAYELVKRG-YPVTILEADPEVGGI 41 (474)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCE
T ss_conf 875999897689999999998689-975999789987544
No 294
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=47.87 E-value=22 Score=16.49 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=64.4
Q ss_pred HHHHCCCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC-
Q ss_conf 999719899987999758988---23467750235259984255430368878753220012200000001431-5521-
Q gi|254780398|r 39 IAESSGSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF- 113 (284)
Q Consensus 39 iv~~~~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~- 113 (284)
|.+..++ +++.+|=-|.+.| ++.+.+++.++ +|....++..-.+.+.+.......+...+.+|+.+-+- ..+.
T Consensus 4 i~~lf~L-~gKvalVTG~s~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~v~ 81 (259)
T PRK08213 4 VLELFDL-TGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWLAADVADEADIERLAE 81 (259)
T ss_pred HHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 6787399-999899948776899999999998699-99999798899999999999549958999826899999999999
Q ss_pred ---C-CCCCEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHH
Q ss_conf ---3-3222011202322467889-------999985201000000110203344788753
Q gi|254780398|r 114 ---N-ISSPIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERIT 163 (284)
Q Consensus 114 ---~-~~~~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~ 163 (284)
. .+.--.+|-|--.....++ ..+.+.-+ + ..+|.+-++++..+.
T Consensus 82 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vN-----l-~g~f~~~~~~~~~~m 136 (259)
T PRK08213 82 ETLERFGHIDILVNNAGATWGAPAEDHPVEAWDKVMNLN-----V-RGTFLLSQAVAKRSM 136 (259)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH-----C-CCHHHHHHHHHHHHH
T ss_conf 999983999899989977889864569999999999884-----4-119999999999999
No 295
>PRK05650 short chain dehydrogenase; Provisional
Probab=47.66 E-value=22 Score=16.46 Aligned_cols=58 Identities=10% Similarity=-0.021 Sum_probs=38.9
Q ss_pred EEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 7999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 50 TVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 50 ~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.||=-|+|.| ++.+.+++.++ +|..+.+|+.-.+.+.+.......+..++.+|+.+-+
T Consensus 2 rVlITGassGIG~alA~~la~~G~-~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~ 62 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKELREAGGDGFYQRCDVRDYS 62 (270)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 799988764999999999998899-8999979889999999999844992899984589999
No 296
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=47.41 E-value=23 Score=16.44 Aligned_cols=36 Identities=36% Similarity=0.608 Sum_probs=29.5
Q ss_pred CCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCC
Q ss_conf 99987999758988234--67750235259984255430
Q gi|254780398|r 46 LDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~ 82 (284)
..+..|-=||.|+..|| ..|++.+. +|+.+|..+..
T Consensus 141 ~~gkkVAVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~ 178 (472)
T PRK12810 141 KTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERDDRI 178 (472)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCC
T ss_conf 689989998977899999999986697-58997257777
No 297
>PRK07233 hypothetical protein; Provisional
Probab=47.40 E-value=17 Score=17.14 Aligned_cols=15 Identities=27% Similarity=0.467 Sum_probs=9.8
Q ss_pred EEEECCCHHHHHHHH
Q ss_conf 112023224678899
Q gi|254780398|r 120 RIIANLPYNIGTRLL 134 (284)
Q Consensus 120 ~vvgNLPYnIss~Il 134 (284)
.||..+|-+...+++
T Consensus 244 ~VI~a~p~~~~~~ll 258 (430)
T PRK07233 244 AVISTIPPPLLARLA 258 (430)
T ss_pred EEEECCCHHHHHHHC
T ss_conf 999899989999756
No 298
>pfam05869 Dam DNA N-6-adenine-methyltransferase (Dam). This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.
Probab=47.14 E-value=23 Score=16.41 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=51.3
Q ss_pred CHHHHCCCCHHHHCCCCCCEEEEECCCHHH-HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 000000143155213322201120232246-7889999985201000000110203344788753012312332345432
Q gi|254780398|r 100 IQDDALKVDFEKFFNISSPIRIIANLPYNI-GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLT 178 (284)
Q Consensus 100 i~~Dal~~d~~~~~~~~~~~~vvgNLPYnI-ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~ 178 (284)
...|+|..||... -.|..|.||+= -.+++.+..+....+. ..|+|+ .+...+..+ .....
T Consensus 50 ~edd~L~~dW~~~------g~vf~NPPYsr~i~~~v~kA~e~~~~g~---~~VvmL--------~~a~~st~W--f~~~~ 110 (179)
T pfam05869 50 AEDNALKQDWSER------GAAFMNPPYSREIRPWVKKAIEQREKGN---QTVVLL--------LAATSSTWW--FEDAL 110 (179)
T ss_pred HHHHHHHHHHHCC------CCEEECCCCCCCHHHHHHHHHHHHHHCC---EEEEEE--------ECCCCCCHH--HHHHH
T ss_conf 3001556443037------8589679986666999999999998399---589999--------745898707--88885
Q ss_pred CCCCCEEEECCCCCCEECC----CCCCC-----EEEEEECCC
Q ss_conf 0133201200011000010----57875-----788730125
Q gi|254780398|r 179 GWRTKATMMFDISPHVFFP----SPKVT-----STVIHFIPH 211 (284)
Q Consensus 179 q~~~~v~~~~~V~~~~F~P----~PkVd-----S~vi~l~pk 211 (284)
+...+|. |..++-.|.. .+.++ |+|+.+.|-
T Consensus 111 ~~A~eI~--fI~GRi~Fi~p~tg~~~~~gn~kgs~i~if~p~ 150 (179)
T pfam05869 111 ENADEIR--FIRGRIAFISPETGEDEKDGNSKGSAIAIFRPW 150 (179)
T ss_pred CCCCEEE--EECCCEEEECCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 2698899--805734432688898764579988599998877
No 299
>PRK06753 hypothetical protein; Provisional
Probab=47.04 E-value=17 Score=17.17 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=24.8
Q ss_pred EEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCHH
Q ss_conf 799975898823467750235-25998425543036
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFFP 84 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~~ 84 (284)
.|+=||.|++.||-+++-... -.|+.+|.++....
T Consensus 2 kV~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~~ 37 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHTVKVFEKNESVTE 37 (373)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 899999458999999999977999999888999887
No 300
>PRK07814 short chain dehydrogenase; Provisional
Probab=46.37 E-value=23 Score=16.34 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHH-C----C-CC
Q ss_conf 99987999758988---23467750235259984255430368878753220012200000001431552-1----3-32
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-F----N-IS 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~-~----~-~~ 116 (284)
.+++.+|=-|.+.| ++...+++.++ +|+...+++.-.+.+.+.......+...+.+|+.+.+--+- . . .+
T Consensus 8 L~gKvalITGgs~GIG~aia~~la~~Ga-~V~i~~~~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~G 86 (263)
T PRK07814 8 LDGQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999899958966899999999998799-899996989999999999985299289998158999999999999999829
Q ss_pred CCEEEEECCCHHHHHHH
Q ss_conf 22011202322467889
Q gi|254780398|r 117 SPIRIIANLPYNIGTRL 133 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~I 133 (284)
.--.+|.|.-+....++
T Consensus 87 ~iDiLVnNAg~~~~~~~ 103 (263)
T PRK07814 87 RLDIVVNNVGGTMPNPL 103 (263)
T ss_pred CCCEEEECCCCCCCCCH
T ss_conf 98899989866788844
No 301
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=46.21 E-value=24 Score=16.33 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCCCCCCC----CHHHHHHHHHHCCCCC----CCEEEEECCCCCHHHHHHHHCCCC--EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65841123----9899999999719899----987999758988234677502352--5998425543036887875322
Q gi|254780398|r 24 YMGQNFLL----DLNILKKIAESSGSLD----GITVIEIGAGPGNLTQMLLTLGAR--KVIVIEKDQQFFPILKDISSQH 93 (284)
Q Consensus 24 ~lGQnFL~----d~~i~~~iv~~~~~~~----~~~VlEIGpG~G~LT~~Ll~~~~~--~v~aiEiD~~~~~~l~~~~~~~ 93 (284)
..||..=. ++.+++.+-......+ .-.+||||+ |+-..+...+. .|++|+... .+
T Consensus 21 ~~GQ~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lr~LEVGA----Lst~N~~S~~~~~dv~rIDLnS-----------q~ 85 (220)
T pfam11968 21 KLGQSKDRGGDSSKVLVEWLKPLLVRLKLGEGKLRALEVGA----LSTKNACSKSGLFDVTRIDLNS-----------QE 85 (220)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECC----CCCCCHHCCCCEEEEEEEECCC-----------CC
T ss_conf 83767778997238999997773577223777631775545----5642122256747778852589-----------99
Q ss_pred HCCCCCCHHHHCCCCHHHHCCCCCCEEEEE
Q ss_conf 001220000000143155213322201120
Q gi|254780398|r 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIA 123 (284)
Q Consensus 94 ~~~~~ii~~Dal~~d~~~~~~~~~~~~vvg 123 (284)
++ |.+.||++.+++.- .+..|.||+
T Consensus 86 p~---I~qqDFmerPlP~~--e~e~F~iIS 110 (220)
T pfam11968 86 PG---ILQQDFMERPLPKD--ESEKFDIIS 110 (220)
T ss_pred CC---CHHHHHHHCCCCCC--CCCCCCEEE
T ss_conf 87---14432440778888--311413588
No 302
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=45.23 E-value=19 Score=16.92 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=24.9
Q ss_pred CEEEEECCCCCHHHHHHHH--CCCCEEEEECCCCCCH
Q ss_conf 8799975898823467750--2352599842554303
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFF 83 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD~~~~ 83 (284)
..|+=||.|++.||-+++- ++. .|+.+|..+...
T Consensus 2 ~DV~IvGaG~aGl~lA~~L~~~Gi-~v~V~Er~~~~~ 37 (349)
T pfam01494 2 TDVLIVGGGPAGLMLALLLARAGV-RVVLVERHATTS 37 (349)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCCC
T ss_conf 978999928899999999987799-899992899988
No 303
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=44.39 E-value=25 Score=16.15 Aligned_cols=47 Identities=32% Similarity=0.399 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCC
Q ss_conf 899999999719899987999758988234--677502352599842554
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~ 80 (284)
+.++++..+.+...-...|.=+|+|+..|| .+|++.+. +|..+|..-
T Consensus 2 rai~~~y~~~l~~~~e~DV~IVGaGpsGL~aA~~LAk~g~-KV~i~E~~l 50 (229)
T pfam01946 2 RAITERYFEDLLDYAESDVVIVGAGPSGLTAAYYLAKKGL-KVAIIERSL 50 (229)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 2789999999987642688998878179999999987898-599996452
No 304
>PRK06475 salicylate hydroxylase; Provisional
Probab=44.32 E-value=18 Score=16.98 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=25.2
Q ss_pred CEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCH
Q ss_conf 8799975898823467750235-2599842554303
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFF 83 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~ 83 (284)
..|+=||+|++.||-+++-... .+|+.+|..+.+.
T Consensus 3 ~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~ 38 (400)
T PRK06475 3 GSILIAGAGVAGLSAALELAARGWAVTIIEKAQELS 38 (400)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 979998958899999999997899999991799888
No 305
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.21 E-value=25 Score=16.13 Aligned_cols=32 Identities=38% Similarity=0.521 Sum_probs=19.0
Q ss_pred CEEEEECCCCCHHHHHH--HHCCCCEEEEECCCCC
Q ss_conf 87999758988234677--5023525998425543
Q gi|254780398|r 49 ITVIEIGAGPGNLTQML--LTLGARKVIVIEKDQQ 81 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~L--l~~~~~~v~aiEiD~~ 81 (284)
..|+=||.|.|.|+-++ ++.+ .+|..+|....
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G-~~V~VlE~~~~ 37 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAG-LKVTVLEKNDR 37 (487)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCC
T ss_conf 62999898878999999999689-97999963788
No 306
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.90 E-value=26 Score=16.10 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH-HHHHHH----CCCCCCHHHHC
Q ss_conf 3989999999971989998799975898823467750235259984255430368878-753220----01220000000
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKD-ISSQHP----NRLEIIQDDAL 105 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~-~~~~~~----~~~~ii~~Dal 105 (284)
+-....+..+..+-......|+.+|+|.-+=-..+-. +..+..+|+|..-+-.+++ ++.+.. ...+.+-.|+.
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~--~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~ 153 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDW--PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEECCC--CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 9999999999999983665899975546532345488--88874897887379999998730327998761799832256
Q ss_pred CCCHHHHCC
Q ss_conf 143155213
Q gi|254780398|r 106 KVDFEKFFN 114 (284)
Q Consensus 106 ~~d~~~~~~ 114 (284)
+-||.+-..
T Consensus 154 ~~dw~~~L~ 162 (297)
T COG3315 154 EDDWPQALA 162 (297)
T ss_pred CCCHHHHHH
T ss_conf 454599998
No 307
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=43.71 E-value=26 Score=16.09 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=65.0
Q ss_pred HHHCCCCCCCEEEEECCCCCHHH-HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCC
Q ss_conf 99719899987999758988234-67750235259984255430368878753220-01220000000143155213322
Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLT-QMLLTLGARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISS 117 (284)
Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT-~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~ 117 (284)
++......+..|||-=+|+|.=. +...+.+..+|++-++|+..++.++++...++ .++++.++||-.+=. ....
T Consensus 44 ~~~~~~~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~----~~~~ 119 (376)
T PRK04338 44 LKAFGPKRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLH----ENER 119 (376)
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH----HCCC
T ss_conf 999742069768740676549999998727998799956999999999999998299826981324899998----3787
Q ss_pred CEEEEECCCHHHHHHHHHHHHH
Q ss_conf 2011202322467889999985
Q gi|254780398|r 118 PIRIIANLPYNIGTRLLFNWIS 139 (284)
Q Consensus 118 ~~~vvgNLPYnIss~Il~~ll~ 139 (284)
.+.+|-==||.-.+|.|..-+.
T Consensus 120 ~fD~IDlDPfGSp~pflDsAi~ 141 (376)
T PRK04338 120 KFDVVDIDPFGSPAPFLDSAIR 141 (376)
T ss_pred CCCEEEECCCCCCCHHHHHHHH
T ss_conf 5877867899992087999999
No 308
>PRK06370 mercuric reductase; Validated
Probab=43.70 E-value=25 Score=16.17 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=12.1
Q ss_pred EEEEECCCCCHHHHHHHHCCC-CEEEEECCC
Q ss_conf 799975898823467750235-259984255
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGA-RKVIVIEKD 79 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD 79 (284)
.|+=||.|+|.+|-++-.... .+|..||.+
T Consensus 6 DviVIG~GpAG~~AA~~aa~~G~~V~liEk~ 36 (459)
T PRK06370 6 DAVVIGAGQAGPPLAARAAGLGMKVALIERG 36 (459)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 5899998889999999999689919999689
No 309
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=43.55 E-value=16 Score=17.36 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHCC----CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 239899999999719----8999879997589882346775023525998425
Q gi|254780398|r 30 LLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEK 78 (284)
Q Consensus 30 L~d~~i~~~iv~~~~----~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEi 78 (284)
.-|-.|+..++..-. ..+....+++|||.|.|+.-|..-|. .-..++.
T Consensus 37 fEDlaIAayLi~LW~~~~~~~~~~~FvDlGCGNGlLV~IL~~EGy-~G~GiD~ 88 (112)
T pfam07757 37 FEDLAIAAYLIMLWRQTRSAESLQSFVDIGCGNGLLVYILASEGY-RGYGIDL 88 (112)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCC-CCCCCCC
T ss_conf 899999999999999861425788537714772289998986788-7733141
No 310
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.51 E-value=21 Score=16.65 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=41.2
Q ss_pred CCCCCEE-EEECCCCCHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHH--HH--HHCCCCCCHHHHCCCC
Q ss_conf 8999879-99758988234677502-3525998425543036887875--32--2001220000000143
Q gi|254780398|r 45 SLDGITV-IEIGAGPGNLTQMLLTL-GARKVIVIEKDQQFFPILKDIS--SQ--HPNRLEIIQDDALKVD 108 (284)
Q Consensus 45 ~~~~~~V-lEIGpG~G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~--~~--~~~~~~ii~~Dal~~d 108 (284)
......+ .=-|-|.|.+-..|++- ..++++.+|.|-+.+..+-..+ +. ...|+.+.+.+..+++
T Consensus 64 ~~~~yp~l~~yG~GnG~~ik~Ll~~~~~k~ivVfE~d~evi~~~~~~~d~s~~l~~~Rl~l~~~~~~~~~ 133 (594)
T COG2604 64 KYNNYPVLVIYGLGNGELIKALLNNKNLKHIVVFEPDIEVIKVALKLLDFSEELQNYRLILLHLSEENLD 133 (594)
T ss_pred HHCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHH
T ss_conf 5058865999714848999999626664559998771449999998888999872173899705533388
No 311
>KOG2617 consensus
Probab=43.49 E-value=12 Score=18.13 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=53.4
Q ss_pred HEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE-EECCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2033447887530123123323454320133201-200011000010578757887301258855347678999999997
Q gi|254780398|r 152 LLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT-MMFDISPHVFFPSPKVTSTVIHFIPHLNPIPCCLESLKKITQEAF 230 (284)
Q Consensus 152 lmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~-~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~~~~~~~~~~~~~~~F 230 (284)
+++|+|||.+-+.. .+. =-+++..+++- -+.+-.-..=.|=|+||+.==.+... ....+..|+.+ +|
T Consensus 346 ~~~qrefA~kh~~~--dpl----~~lv~~l~kiap~vl~e~gk~kNp~PNVD~hSGvll~~---yGl~e~~fyTV---LF 413 (458)
T KOG2617 346 YKVQREFALKHLPD--DPL----FLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQY---YGLPELFFYTV---LF 413 (458)
T ss_pred HHHHHHHHHHCCCC--CCC----HHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHH---HCCCHHHHHHH---HH
T ss_conf 89999999863898--840----44237787646588888745058997656677789987---07718988999---98
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHC
Q ss_conf 2731389998763181789997877746571208999999999998636
Q gi|254780398|r 231 GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITNILTDN 279 (284)
Q Consensus 231 ~~RRK~l~~~L~~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~~ 279 (284)
.-.| ..-.|.+. -|-+.+|. +-.||.+.+.+-|.++++....+
T Consensus 414 gVsR--a~Gvlsql---iw~ralg~-pieRPks~~t~~~~~~~~~~~~~ 456 (458)
T KOG2617 414 GVSR--ALGVLSQL---IWDRALGL-PIERPKSVSTDWLHRFTNMVRER 456 (458)
T ss_pred HHHH--HHHHHHHH---HHHHHHCC-CCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 7766--67889999---99987078-64473003358999999875203
No 312
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=43.06 E-value=26 Score=16.02 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCCCC-CHHHHHHHHHHCCCC----CCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHH--------------H
Q ss_conf 841123-989999999971989----998799975898823467750235259984255430368--------------8
Q gi|254780398|r 26 GQNFLL-DLNILKKIAESSGSL----DGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPI--------------L 86 (284)
Q Consensus 26 GQnFL~-d~~i~~~iv~~~~~~----~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~--------------l 86 (284)
|-+|-. -..-++.|.+.+... .-.++|++|||-++.--+|++++.-.+-.--.|.+-+.+ +
T Consensus 91 GT~F~~Ga~~Yid~i~~~ip~~~~~~~vRt~LDvGCGVASfGayLl~r~vltMS~AP~D~HeaQVQfALERGiPA~igvl 170 (506)
T pfam03141 91 GTQFPHGADAYIDFLAQVIPLIAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVL 170 (506)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 87676679999999998567555798568999768872103777632784588734764118889999971852566564
Q ss_pred HHHHHHHH-CCCCCCHHHHCCCCHHHH-----------CCCCCCEEEEECCCHH
Q ss_conf 78753220-012200000001431552-----------1332220112023224
Q gi|254780398|r 87 KDISSQHP-NRLEIIQDDALKVDFEKF-----------FNISSPIRIIANLPYN 128 (284)
Q Consensus 87 ~~~~~~~~-~~~~ii~~Dal~~d~~~~-----------~~~~~~~~vvgNLPYn 128 (284)
-...-.++ +-|..+|+.-..++|... .-+++ |.|.+--|-|
T Consensus 171 gT~rLPyPs~sFDm~HCsRC~IpW~~~dG~~LlEvdRvLRPGG-YfV~S~pPv~ 223 (506)
T pfam03141 171 GTRRLPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGG-YFVLSGPPVY 223 (506)
T ss_pred HCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEHCCCCCC-EEEECCCCCC
T ss_conf 0353588753301244224567410479778865400004786-6994678655
No 313
>pfam04378 DUF519 Protein of unknown function (DUF519). Bacterial family of unknown function, possibly secreted.
Probab=43.06 E-value=26 Score=16.02 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=87.0
Q ss_pred EEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHH
Q ss_conf 99975898823467750235259984255430368878753220012200000001431552133222011202322467
Q gi|254780398|r 51 VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIG 130 (284)
Q Consensus 51 VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIs 130 (284)
-+..=||-=.+...+++.+ .+++++|.-+.-++.|++.+.... ++++.+.|..+--..-+.+.+..--|.=--||-+.
T Consensus 61 ~l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~-~v~v~~~DG~~~l~a~lPP~~rRglVLIDPpYE~k 138 (245)
T pfam04378 61 KLRYYPGSPLLARQLLRAQ-DRLVLCELHPSDYPLLKAEFAGDR-RVRVHQADGFAALKAFLPPKERRGLVLIDPPFELK 138 (245)
T ss_pred CCCCCCCCHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHCCCC-CCEEEECCHHHHHHHHCCCCCCCEEEEECCCCCCH
T ss_conf 9688899899999848966-768988559799999998745587-65799365899999668997786799967986665
Q ss_pred HHH--HHHHHHHHCCCCCCCHHHHEE-----EHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCE
Q ss_conf 889--999985201000000110203-----3447887530123123323454320133201200011000010578757
Q gi|254780398|r 131 TRL--LFNWISADTWPPFWESLTLLF-----QKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 (284)
Q Consensus 131 s~I--l~~ll~~~~~~~~~~~~vlmv-----QkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS 203 (284)
+.. +...+.... ..|...++++ +.+-.+++... ...+.+--.+. +++- |.+ ...+..-.-|
T Consensus 139 ~ey~~v~~~l~~a~--~r~~~g~y~iWYPi~~~~~~~~~~~~-----l~~~~~~~~l~--~El~--v~~-~~~~~gm~GS 206 (245)
T pfam04378 139 DEYQRVVAALREAY--KRWPTGIYAIWYPIKDRRQVKRFYRA-----LEGTGIRKILI--IELE--VRP-DSDPRGMNGS 206 (245)
T ss_pred HHHHHHHHHHHHHH--HHCCCCEEEEEEECCCHHHHHHHHHH-----HHHCCCCCEEE--EEEE--ECC-CCCCCCCCCE
T ss_conf 69999999999999--85788379999655874999999999-----98538987489--9999--627-9999995520
Q ss_pred EEEEECCC
Q ss_conf 88730125
Q gi|254780398|r 204 TVIHFIPH 211 (284)
Q Consensus 204 ~vi~l~pk 211 (284)
.++.+-|-
T Consensus 207 Gm~iiNPP 214 (245)
T pfam04378 207 GMVVINPP 214 (245)
T ss_pred EEEEECCC
T ss_conf 59998787
No 314
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=42.47 E-value=23 Score=16.37 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCCCHHHH--HHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH
Q ss_conf 999879997589882346--77502352-59984255430368878753220012200000001431
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQ--MLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~--~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~ 109 (284)
..+..||=||.|.-+..+ .|++.+|+ .|++-|+++.+ .+.... ++++++..++..-|+
T Consensus 8 l~gk~vLVVGGG~vA~rK~~~Ll~~gA~VtVvsp~~~~el----~~l~~~--~~i~~~~~~~~~~dl 68 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHITVISPEITENL----VKLVEE--GKIRWKEKEFEPSDI 68 (202)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHH----HHHHHC--CCCEEEECCCCHHHH
T ss_conf 2898699988989999999999868996999869999899----999976--994476167886675
No 315
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.14 E-value=27 Score=15.94 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=43.9
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=.|.+.| ++.+.|++.++ +|+...+++.-.+.+.+..... +++..+.+|+.+.+
T Consensus 3 l~gK~~lVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~-g~~~~~~~Dvs~~~ 66 (238)
T PRK05786 3 LKGKNVLIVGVSPGLGYAVAYFALREGA-SVYAFARSEEKLKEIKKTLAKY-GNVIYVVGDVSKLE 66 (238)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCC-CCEEEEECCCCCHH
T ss_conf 7998899928987899999999998799-9999969889999999987435-97799975789999
No 316
>PRK12939 short chain dehydrogenase; Provisional
Probab=42.04 E-value=27 Score=15.93 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHH-C-----CC
Q ss_conf 899987999758988---23467750235259984255430368878753220012200000001431552-1-----33
Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKF-F-----NI 115 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~-~-----~~ 115 (284)
..+++.+|=-|.+.| ++.+.|++.++ .|+...++..-.+.+.+.......++..+.+|+.+.+--+- . ..
T Consensus 4 ~L~~KvalVTGgs~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 4 SLAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99998799958366899999999998799-99999698899999999999559909999924899999999999999974
Q ss_pred CCCEEEEECCCHHHHHHHH-------HHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 2220112023224678899-------9998520100000011020334478875301
Q gi|254780398|r 116 SSPIRIIANLPYNIGTRLL-------FNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 116 ~~~~~vvgNLPYnIss~Il-------~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
+..-.+|.|-=+....++. .+.+.-+ + ..++++-|++...|...
T Consensus 83 g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~iN-----l-~~~~~~~k~~~~~m~~~ 133 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVN-----V-RGTFLMSRAALPHLRDS 133 (250)
T ss_pred CCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 999799988778999990349999999999998-----2-99999999999999984
No 317
>PRK07236 hypothetical protein; Provisional
Probab=41.79 E-value=25 Score=16.21 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCC-CEEEEECCCCC
Q ss_conf 998799975898823467750235-25998425543
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQ 81 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~ 81 (284)
..-.|+=||.|++.||-+++-+.. ..|+.+|..+.
T Consensus 5 ~~~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~~ 40 (386)
T PRK07236 5 SKPRAVVVGGSLGGLFAANLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999689999368999999999858999899868998
No 318
>PRK07479 consensus
Probab=41.35 E-value=28 Score=15.86 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=43.5
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+++.+|=.|.+.| ++.+.|++.++ +|+...+|+.-.+.+.+.......+...+.+|+.+.+
T Consensus 4 ~gK~alITGgs~GIG~a~a~~la~~G~-~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~ 67 (252)
T PRK07479 4 SGKVAIVTGAGSGFGEGIAKRFAREGA-KVVVADLNAAAAERVASEIADAGGNAIAVAADVSRGA 67 (252)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 998899938876899999999998799-9999979899999999999853997899992589999
No 319
>pfam00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disea
Probab=41.09 E-value=16 Score=17.41 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.5
Q ss_pred EEECCCHHHHHHHHHHHHHH
Q ss_conf 12023224678899999852
Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISA 140 (284)
Q Consensus 121 vvgNLPYnIss~Il~~ll~~ 140 (284)
.||||||++|..-|..+...
T Consensus 2 ~V~nLp~~~t~~~l~~~F~~ 21 (70)
T pfam00076 2 FVGNLPPDTTEEDLKDLFSK 21 (70)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 89599995889999999998
No 320
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=40.03 E-value=29 Score=15.73 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=48.3
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH----HHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
Q ss_conf 7887301258855347678999999997273138999876318178----999787774657120899999999999863
Q gi|254780398|r 203 STVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLKRLGGEN----LLHQAGIETNLRAENLSIEDFCRITNILTD 278 (284)
Q Consensus 203 S~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~----~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 278 (284)
+..|-+.|.. +.+.+.+-+ .=.+++|.++|.|++..++. ++++.+| ++..-.++++.+.-.|++.++.
T Consensus 261 ~i~iDllP~~-----~~~~l~~~l--~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~ 332 (408)
T COG2081 261 TLSIDLLPDV-----DAEELLREL--RRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKA 332 (408)
T ss_pred EEEEECCCCC-----CHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCCHHHHHHHHHHHHC
T ss_conf 6999648999-----999999999--7658556899999877326799999985357-8742565598889999999754
Q ss_pred C
Q ss_conf 6
Q gi|254780398|r 279 N 279 (284)
Q Consensus 279 ~ 279 (284)
=
T Consensus 333 ~ 333 (408)
T COG2081 333 W 333 (408)
T ss_pred C
T ss_conf 7
No 321
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=39.98 E-value=29 Score=15.73 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=43.3
Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+..+++.+|=.|.+.| ++.+.+++.++ +|+.+++|+.-.+.+.+. +++++..+.+|+.+.+
T Consensus 2 ~~L~gK~alVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~~~~~---~~~~~~~~~~Dv~~~~ 65 (263)
T PRK06200 2 GWLTGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKCASLRQR---FGDDVLVVEGDVTSYA 65 (263)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---HCCCEEEEECCCCCHH
T ss_conf 871728899958667999999999998799-999997999999999998---1886468717999999
No 322
>PRK06172 short chain dehydrogenase; Provisional
Probab=39.95 E-value=29 Score=15.72 Aligned_cols=113 Identities=14% Similarity=0.059 Sum_probs=61.5
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC-HHHHC----CCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143-15521----3322
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-FEKFF----NISS 117 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d-~~~~~----~~~~ 117 (284)
.+++.+|=-|.+.| ++.+.+++.++ +|+...+++.-.+.+.+.......+...+.+|..+-+ ...+. ..-+
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G 83 (253)
T PRK06172 5 FSGQVALVTGGAAGIGRATAIAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFIACDVTRDAEVKALVEKTIAAYG 83 (253)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 6999899937576899999999998799-899997988999999999996499379998189999999999999999829
Q ss_pred CE-EEEECCCHH--------HHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 20-112023224--------6788999998520100000011020334478875301
Q gi|254780398|r 118 PI-RIIANLPYN--------IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 118 ~~-~vvgNLPYn--------Iss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
+. .+|-|-=.. ++..-..+.+.-+ + ..++.+.++++..|..+
T Consensus 84 ~iDiLVNNAGi~~~~~~~~~~~~e~w~~~~~vN-----l-~g~~~~~~~~~~~m~~~ 134 (253)
T PRK06172 84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVN-----V-KGVWLCMKYQIPLMLAQ 134 (253)
T ss_pred CCCEEEECCCCCCCCCCCHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 999999898889999990139999999999997-----3-99999999999999985
No 323
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=39.80 E-value=30 Score=15.71 Aligned_cols=61 Identities=34% Similarity=0.565 Sum_probs=40.9
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf 89998799975898-823467750-2352599842554303688787532200122000000014
Q gi|254780398|r 45 SLDGITVIEIGAGP-GNLTQMLLT-LGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284)
Q Consensus 45 ~~~~~~VlEIGpG~-G~LT~~Ll~-~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284)
...|..|+=+|+|| |-|.-+.++ .+|++|++.|.++-=.+.+++ ..- .--+.+...|.+++
T Consensus 159 ~~~G~~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~neyRleLAkk-~Ga-t~~vn~~kEd~~k~ 221 (341)
T TIGR00692 159 DLAGEDVLVIGAGPIGLMAVAVAKAAGARNVIVIDKNEYRLELAKK-MGA-TRVVNVAKEDLVKV 221 (341)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH-CCC-CEEEECCCCCHHHH
T ss_conf 7688718998577478999999877278405996586479999987-098-65870101476898
No 324
>PRK07538 hypothetical protein; Provisional
Probab=39.46 E-value=26 Score=16.09 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=24.3
Q ss_pred EEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf 7999758988234677502352-59984255430
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQF 82 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~ 82 (284)
.|+=||.|++.||-+++-.... .|+.+|..+.+
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPEL 35 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 8999990589999999999789998999369988
No 325
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=39.33 E-value=30 Score=15.67 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=79.5
Q ss_pred EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf 79997589882346775023525998425543036887875322001220000000143155213322201120232246
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284)
.+|.+| .|.||.-| +---++.|-. .+.++.|++........| ||...-+..+.-..+-.-+.-+.-=++
T Consensus 201 v~LPLg--eg~Lt~NL---GiPIvVV~tK-sD~me~LEKe~dy~dEhF-----DfIqq~LR~fCLqyGAALiYTSvKe~k 269 (490)
T pfam05783 201 VLLPLG--ENVLTHNL---GIPVVVVCTK-CDAMSVLEKEHDYRDEHF-----DFIQSHIRRFCLQYGAALIYTSVKEEK 269 (490)
T ss_pred CCCCCC--CCCCCCCC---CCCEEEEEEC-CHHHHHHHHHCCCCHHHH-----HHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 214689--87100047---9877999946-418888765126206778-----999999999998619657885235450
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCE
Q ss_conf 78899999852010000001102033447887530123123323454320133201200011000010578757
Q gi|254780398|r 130 GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS 203 (284)
Q Consensus 130 ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS 203 (284)
--.+|.+++.+..+...|+.-.+.|.|+ .+.-+.|..+-..++++..-++.++ .+-|=+.+-++|-|.-
T Consensus 270 N~dlLykYl~HRiYgfpF~~pa~vvekD---aVFIPaGWD~~kKI~il~EN~~~~~--~~~~y~diI~kP~~rk 338 (490)
T pfam05783 270 NLDLLYKYLVHKIYGFPFNTPALVVEKD---AVFIPAGWDNEKKIGILHENFQTVK--PEDPYEDFIVKPPVRK 338 (490)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEECC---CEEECCCCCCHHHHHHHHHHCCCCC--CCCCHHHCCCCCCCCC
T ss_conf 1899999999886188779864464035---3573278772766556676432158--7874232244787533
No 326
>KOG0024 consensus
Probab=39.16 E-value=30 Score=15.65 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=38.5
Q ss_pred HHHHHCCCCCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEECCCCCCHHHHHH
Q ss_conf 999971989998799975898-823467750-235259984255430368878
Q gi|254780398|r 38 KIAESSGSLDGITVIEIGAGP-GNLTQMLLT-LGARKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 38 ~iv~~~~~~~~~~VlEIGpG~-G~LT~~Ll~-~~~~~v~aiEiD~~~~~~l~~ 88 (284)
--++.++...+++||=.|+|+ |.+|..-++ -+|.+|+.+|.++.-.+.+++
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 03332476668868997676899999999987498728996067779999998
No 327
>PRK06720 hypothetical protein; Provisional
Probab=39.14 E-value=30 Score=15.65 Aligned_cols=62 Identities=29% Similarity=0.278 Sum_probs=43.2
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.++=-|.|.| ++.+.+++.++ +|....+|..-.+...+......++...+.+|..+.+
T Consensus 14 L~gKvalITGa~~GIG~a~A~~la~~Ga-~Vvi~d~~~~~~~~~~~~i~~~g~~a~~~~~Dvs~~~ 78 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQG 78 (169)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 2999999989754899999999998699-8999527636599999999974995378975889999
No 328
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=39.00 E-value=28 Score=15.88 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=15.8
Q ss_pred CEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCC
Q ss_conf 879997589882346--7750235259984255430
Q gi|254780398|r 49 ITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQF 82 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~ 82 (284)
..++=||.|.-++-. .+.+.+ .+|+.+|..+++
T Consensus 158 ~~v~ViGgG~ig~E~A~~~~~lG-~~Vtli~~~~~l 192 (438)
T PRK07251 158 KRLGILGGGNIGLEFAGLYNKLG-SKVTVLDAASTF 192 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECCCC
T ss_conf 76999888645889999998348-768999846100
No 329
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=38.24 E-value=31 Score=15.56 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=64.5
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-HH----CCC-CC
Q ss_conf 9987999758988---234677502352599842554303688787532200122000000014315-52----133-22
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KF----FNI-SS 117 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-~~----~~~-~~ 117 (284)
+++.+|=-|.+.| ++.+.+++.++ +|+...+|..-.+.+.+.......+...+.+|+.+.+-- .+ ... +.
T Consensus 13 ~gK~alITGgs~GIG~~ia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 91 (259)
T PRK06124 13 AGQVALVTGSARGLGLEIARALAEAGA-HVLVNGRNAARVEAAVAALRAAGGAAEALVFDISDEEAVAAAFARIDAEHGR 91 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 999899928674899999999998799-9999969889999999999965995899995179999999999999997599
Q ss_pred CEEEEECCCHHHHHHHH-------HHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 20112023224678899-------9998520100000011020334478875301
Q gi|254780398|r 118 PIRIIANLPYNIGTRLL-------FNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 118 ~~~vvgNLPYnIss~Il-------~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
--.+|-|.-.+...++. .+.++-+ +. ..+.+-++++..|...
T Consensus 92 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~~N-----l~-g~~~~~q~~~~~M~~~ 140 (259)
T PRK06124 92 LDILVNNVGARNRRPLAELDDAEIRALLETD-----LV-APILLSRLAAQRMVRQ 140 (259)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHC
T ss_conf 9799989888999990669999999999998-----49-9999999999998776
No 330
>KOG1122 consensus
Probab=38.18 E-value=31 Score=15.55 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf 997198999879997589882346775023--5259984255430368878753220-01220000000143
Q gi|254780398|r 40 AESSGSLDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284)
Q Consensus 40 v~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284)
|-.++++++..|++.-+-+|.=|.+++..- -.-|+|-+....-+..++.....+. ++..+.+.|..++.
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred EEECCCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 452079988711212107995077899987277469961354377999998899748774489736763255
No 331
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=38.17 E-value=31 Score=15.55 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHH-HHH--------HHH----HHCCC
Q ss_conf 39899999999719899987999758988234677502352599842554303688-787--------532----20012
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPIL-KDI--------SSQ----HPNRL 97 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l-~~~--------~~~----~~~~~ 97 (284)
+++-+.+. ...++..++..|+==|||.+.=-..|+++|. +|++||+-+..++.. ++. ... ..+++
T Consensus 22 vnp~L~~~-~~~L~~~~~~rVlVPlCGKs~Dm~wLa~~G~-~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i 99 (218)
T PRK13255 22 VNPLLQKY-WPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEI 99 (218)
T ss_pred CCHHHHHH-HHHCCCCCCCEEEEECCCCHHHHHHHHHCCC-EEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCE
T ss_conf 99799999-9960878898699948986776999984897-269983529999999997389863013676037753882
Q ss_pred CCCHHHHCCCCHHHHCCC---CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHH
Q ss_conf 200000001431552133---22201120232246788999998520100000011020334478875301231233234
Q gi|254780398|r 98 EIIQDDALKVDFEKFFNI---SSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRL 174 (284)
Q Consensus 98 ~ii~~Dal~~d~~~~~~~---~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~L 174 (284)
+|.+||+.+++....... .....+|| ||-..-.+-..++... .+++.+...+.+... .+.+.++|=+-.-.-+
T Consensus 100 ~i~~gDfF~L~~~~~g~~DaIyDRaal~A-Lpp~~R~~Y~~~l~~l--l~~g~~~LLitl~Y~-q~~~~GPPFsv~~~Ev 175 (218)
T PRK13255 100 SLYCGDFFALTAADLADVDAVYDRAALIA-LPEEMRERYVQQLAAL--LPAGCRGLLVTLDYP-QEELAGPPFSVSDEEV 175 (218)
T ss_pred EEEECCCCCCCHHHCCCCCEEEECCCEEC-CCHHHHHHHHHHHHHH--CCCCCCEEEEEEECC-CCCCCCCCCCCCHHHH
T ss_conf 79966420278635477488997538012-8989999999999986--499874899998627-6556896998999999
Q ss_pred HHHHCCCCCEEEECCC
Q ss_conf 5432013320120001
Q gi|254780398|r 175 SVLTGWRTKATMMFDI 190 (284)
Q Consensus 175 Sv~~q~~~~v~~~~~V 190 (284)
.-+..-.|+++.+...
T Consensus 176 ~~ly~~~~~i~~L~~~ 191 (218)
T PRK13255 176 EALFAGDFEIELLERQ 191 (218)
T ss_pred HHHHCCCCEEEEEEEE
T ss_conf 9984378679997631
No 332
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=31 Score=15.55 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=5.8
Q ss_pred EEEEECCCCCHHH
Q ss_conf 7999758988234
Q gi|254780398|r 50 TVIEIGAGPGNLT 62 (284)
Q Consensus 50 ~VlEIGpG~G~LT 62 (284)
.||=+|.|+-.-.
T Consensus 213 DVLvVGgGPAgaa 225 (520)
T COG3634 213 DVLVVGGGPAGAA 225 (520)
T ss_pred EEEEECCCCCHHH
T ss_conf 4999868863167
No 333
>PRK06194 hypothetical protein; Provisional
Probab=37.69 E-value=32 Score=15.51 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=42.9
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.++=-|.+.| ++.+.+++.++ +|+.+.++..-.+.+.+.+.....++..+.+|+.+.+
T Consensus 4 l~gKvavITGassGIG~a~A~~la~~Ga-~Vvl~d~~~~~l~~~~~~l~~~g~~v~~~~~DVsd~~ 68 (301)
T PRK06194 4 FAGKVAVITGAASGFGREFARIGARLGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAA 68 (301)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 8999899927377999999999998799-8999979889999999999845984999965689999
No 334
>PRK07588 hypothetical protein; Provisional
Probab=37.63 E-value=29 Score=15.79 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHHCCC-CEEEEECCCCCCH
Q ss_conf 799975898823467750235-2599842554303
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLTLGA-RKVIVIEKDQQFF 83 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~~~~-~~v~aiEiD~~~~ 83 (284)
.|+=||.|.+.||-++.-+.. ..++.+|..+.+-
T Consensus 2 kVlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r 36 (391)
T PRK07588 2 KIAISGAGIAGATLAHWLQRTGHEPTLIERAPKLR 36 (391)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 79999932899999999986899989990389888
No 335
>pfam05833 FbpA Fibronectin-binding protein A N-terminus (FbpA). This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host.
Probab=37.63 E-value=32 Score=15.50 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=19.5
Q ss_pred CCCEEE--EECCCCCHH-----HHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 998799--975898823-----467750235259984255430368878
Q gi|254780398|r 47 DGITVI--EIGAGPGNL-----TQMLLTLGARKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 47 ~~~~Vl--EIGpG~G~L-----T~~Ll~~~~~~v~aiEiD~~~~~~l~~ 88 (284)
..|.|+ +++.+.|.. .-.|.-+. .+++.++-|...+.-++.
T Consensus 92 ~~DRii~l~f~~~~G~~~~~~Li~ElmGr~-SNiiLvd~~~~Iida~k~ 139 (447)
T pfam05833 92 GFDRIVEFEFEKRDGDEIEYTLIVELMGRH-SNIILVDENNKIIDAIKH 139 (447)
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEECCCC-CCEEEECCCCCEEHHHHC
T ss_conf 883799999972699730489999971786-618998799948601112
No 336
>PRK09186 flagellin modification protein A; Provisional
Probab=37.43 E-value=32 Score=15.48 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=42.8
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH-HHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---23467750235259984255430368878753-22001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISS-QHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~-~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=-|.+.| ++.+.|++.++ +|+...+|..-.+.+.+... ....++..+.+|+.+-+
T Consensus 2 L~gK~~lVTGgs~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~ 67 (255)
T PRK09186 2 LEGKTILITGAGGLIGSALVKAILEAGG-IVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQE 67 (255)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 8959899979586899999999998799-99999698899999999998705980799984689999
No 337
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=37.17 E-value=32 Score=15.54 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=12.0
Q ss_pred EEEECCCCCHHHHHHHH--CCCCEEEEECCC
Q ss_conf 99975898823467750--235259984255
Q gi|254780398|r 51 VIEIGAGPGNLTQMLLT--LGARKVIVIEKD 79 (284)
Q Consensus 51 VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD 79 (284)
|+=||.|+|.+|-++-. .+ ++|..||.+
T Consensus 3 vvVIG~GpaG~~aA~~aa~~G-~kV~lIEk~ 32 (458)
T PRK06912 3 LVIIGGGPAGYVAAITAAQNG-KEVTLIDEA 32 (458)
T ss_pred EEEEEECHHHHHHHHHHHHCC-CEEEEEECC
T ss_conf 999900889999999999785-959999589
No 338
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=36.86 E-value=25 Score=16.15 Aligned_cols=45 Identities=33% Similarity=0.557 Sum_probs=26.5
Q ss_pred EECCCCCHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHH-HCCCCH
Q ss_conf 97589882346775--0235259984255430368878753220012200000-001431
Q gi|254780398|r 53 EIGAGPGNLTQMLL--TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDD-ALKVDF 109 (284)
Q Consensus 53 EIGpG~G~LT~~Ll--~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~D-al~~d~ 109 (284)
=||+|.|.|-.++. ..|. +|+.+|.+.. ..+|--.++.| --+||-
T Consensus 3 VIGAG~gGLA~A~rL~~~G~-~vtv~E~~d~-----------pGGRA~~~~~~fGf~fD~ 50 (526)
T TIGR02734 3 VIGAGFGGLALAIRLQAAGI-RVTVVEKRDK-----------PGGRAGVLEDDFGFRFDT 50 (526)
T ss_pred EECCCHHHHHHHHHHHHCCC-EEEEEEECCC-----------CCCEEEEEECCCCEEEEC
T ss_conf 85777689999999973795-2899860689-----------875055688157546605
No 339
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=36.63 E-value=33 Score=15.40 Aligned_cols=47 Identities=32% Similarity=0.368 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCC
Q ss_conf 899999999719899987999758988234--677502352599842554
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQ 80 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~ 80 (284)
+.++++..+-+.......|.=+|+|+-.|| .+|++.+. +|..+|..-
T Consensus 10 raI~~~y~~~l~~~~e~DVvIVGaGpsGLtAAy~LAk~g~-Kv~i~E~~l 58 (257)
T PRK04176 10 RAIVESYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL 58 (257)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 9999999999987640688998888279999999986896-599997134
No 340
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=36.05 E-value=17 Score=17.18 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHC
Q ss_conf 99987999758988234677502
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTL 68 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~ 68 (284)
...|.|++||||.|..--.++..
T Consensus 547 ~~AD~iIDiGPgAG~~GGeIv~~ 569 (935)
T COG0178 547 RAADHIIDIGPGAGEHGGEIVAE 569 (935)
T ss_pred HHCCEEEEECCCCCCCCCEEEEC
T ss_conf 64688996079877678789970
No 341
>PRK07576 short chain dehydrogenase; Provisional
Probab=35.95 E-value=34 Score=15.33 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=42.0
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=.|.+.| ++++.+++.++ +|+...+|+.-++...+.......+...+.+|+.+.+
T Consensus 6 L~gK~alVTGgs~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 70 (260)
T PRK07576 6 LAGKNVFVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEALGVSADVRDYA 70 (260)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 3899899958961999999999998799-9999979889999999999953994899993189999
No 342
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=35.91 E-value=34 Score=15.33 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=29.8
Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCC
Q ss_conf 9719899987999758988234677502-352-599842554
Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQ 80 (284)
Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~ 80 (284)
..+++.++.+|+|+=||-|-.|+-+... +++ .|+++--++
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EEECCCCCCEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHH
T ss_conf 775268998799983488507444110028750598856434
No 343
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=35.84 E-value=34 Score=15.32 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=61.1
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC-HHHH----CCC-C
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143-1552----133-2
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-FEKF----FNI-S 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d-~~~~----~~~-~ 116 (284)
.+++.+|=-|.+.| ++.+.+++.++ +|+...++..-.+.+.+.......++..+.+|..+.+ ..++ ... +
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 80 (258)
T PRK12429 2 LKGKTALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAKAAEAIKKAGGKAIGVAMDVTDEEAINAGIDKVVETFG 80 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 8959899948875899999999998799-999997988999999999984499189998358999999999999999829
Q ss_pred CCEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22011202322467889-------99998520100000011020334478875301
Q gi|254780398|r 117 SPIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.--.+|.|--+....++ ..+.++-+ + ..++.+-+++...|...
T Consensus 81 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vN-----l-~~~~~~~~~~~p~m~~~ 130 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIM-----L-DGAFLTTKAALPHMKAQ 130 (258)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHH-----H-HHHEEEHHHHHHHHHHC
T ss_conf 97099989988899881559999999999976-----2-32122006777766435
No 344
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.50 E-value=35 Score=15.29 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=41.5
Q ss_pred CCCCCCEEEEEC--C--CCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf 989998799975--8--988-234677502352599842554303688787532200122000000014
Q gi|254780398|r 44 GSLDGITVIEIG--A--GPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV 107 (284)
Q Consensus 44 ~~~~~~~VlEIG--p--G~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~ 107 (284)
+..+++.+|=-| . |.| ++.+.+++.++ +|....+..+..+.+.+...+.... .++.+|+.+-
T Consensus 2 g~L~GK~~lVTG~a~~~GIG~aiA~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~g~~-~~~~~Dv~~~ 68 (260)
T PRK06997 2 GFLAGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSD-LVFPCDVADD 68 (260)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCC-EEEECCCCCH
T ss_conf 98999889998998872899999999998599-9999808806699999999862984-7998379999
No 345
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=35.43 E-value=35 Score=15.28 Aligned_cols=109 Identities=21% Similarity=0.340 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCCE---EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 23123323454320133201200011000010578757---887301258855347678999999997273138999876
Q gi|254780398|r 166 KNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVTS---TVIHFIPHLNPIPCCLESLKKITQEAFGKRRKTLRQSLK 242 (284)
Q Consensus 166 pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS---~vi~l~pk~~~~~~~~~~~~~~~~~~F~~RRK~l~~~L~ 242 (284)
-|--+|=+-+..++.++.+.+.---..-.-||+ -++. .=-.+.|+ |...+.+.+..+++ ..||.+++.=|.
T Consensus 190 qgi~eYlkrTaiinPhA~I~l~dPdG~~~vf~r-~t~~lP~pP~E~kPH--P~gvd~~~L~~M~~---~T~~~tv~~fL~ 263 (538)
T COG1389 190 QGIYEYLKRTAIINPHARIVLKDPDGNLVVFPR-STDKLPKPPKEIKPH--PHGVDLDTLKKMAH---RTRRSTVREFLV 263 (538)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCEEEECC-CHHHCCCCCCCCCCC--CCCCCHHHHHHHHH---HHHHHHHHHHHH
T ss_conf 479999988753387417999889986787133-141179993004899--76457889999998---753435999999
Q ss_pred H----CCC---HHHHHHCCCCCCCCHHCCC----HHHHHHHHHHHHHCC
Q ss_conf 3----181---7899978777465712089----999999999986364
Q gi|254780398|r 243 R----LGG---ENLLHQAGIETNLRAENLS----IEDFCRITNILTDNQ 280 (284)
Q Consensus 243 ~----~~~---~~~l~~~~i~~~~R~e~Ls----~~~~~~L~~~l~~~~ 280 (284)
. ... +++++..|++++.-|.+|+ .++--+|.+.+.+.+
T Consensus 264 sef~rig~~ta~e~~e~~g~~~~~~p~~L~~~~~~eea~~lv~a~~~~~ 312 (538)
T COG1389 264 SEFSRIGEKTADELLEYAGFDPDKKPRELTKKKTREEAEKLVEAFKKMK 312 (538)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 9987762667999999846796548788603457899999999998586
No 346
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=35.26 E-value=35 Score=15.27 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=84.3
Q ss_pred HHHHHHCC-----CCCCCCCCCCCCCCHHHHHHHHHHCC----CCCCCEEEEECCCCCHHHHHHHH-----CCCC-EEEE
Q ss_conf 99999818-----98433658411239899999999719----89998799975898823467750-----2352-5998
Q gi|254780398|r 11 KTILSHYK-----IIPKKYMGQNFLLDLNILKKIAESSG----SLDGITVIEIGAGPGNLTQMLLT-----LGAR-KVIV 75 (284)
Q Consensus 11 ~~ll~~~~-----~~p~k~lGQnFL~d~~i~~~iv~~~~----~~~~~~VlEIGpG~G~LT~~Ll~-----~~~~-~v~a 75 (284)
..|.+++| |||+- + |=+|+.|+...-.+|. -.+-...++.=||-|.....-++ -++. ++|.
T Consensus 196 Q~L~E~FN~vPl~IRP~s-F---FQTNP~VA~~LYATAr~WV~e~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTG 271 (386)
T TIGR02085 196 QALPERFNDVPLFIRPQS-F---FQTNPKVAAQLYATARQWVRELPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTG 271 (386)
T ss_pred HHHHHHHCCCCEEECCCC-C---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 221444189861663786-4---467878898876889999974571103201046541278998987641589704431
Q ss_pred ECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCH-HHHHHHHH
Q ss_conf 4255430368878753220-012200000001431552133222011202322-46788999
Q gi|254780398|r 76 IEKDQQFFPILKDISSQHP-NRLEIIQDDALKVDFEKFFNISSPIRIIANLPY-NIGTRLLF 135 (284)
Q Consensus 76 iEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPY-nIss~Il~ 135 (284)
|||....+.-+++-..... .++.+--=|+-++--.+ ..+.|--|+=|-|= .|++++-.
T Consensus 272 IEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~--~e~~PeLVlVNPPRRGiG~eL~~ 331 (386)
T TIGR02085 272 IEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQ--AESVPELVLVNPPRRGIGKELCD 331 (386)
T ss_pred EEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--CCCCCCEEEECCCCCCCCHHHHH
T ss_conf 3437789999999998735332104544579999862--36889657767888887606899
No 347
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.71 E-value=36 Score=15.21 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 99987999758988---23467750235259984255430368878753220012200000001
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
.+++.+|=-|+|.| ++.+.+++.|+ +|+.+.+|+.-+..+.+.......++..+..|..+
T Consensus 3 lk~Kv~lITGas~GIG~aiA~~~A~~Ga-~Vii~~r~~~~l~~~~~~i~~~g~~~~~~~~d~~~ 65 (227)
T PRK08862 3 IKNSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALNDTYEQCSALTDNVYSYQLKDFS 65 (227)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9999999979887999999999998799-99999699999999999999758974899951661
No 348
>PRK06185 hypothetical protein; Provisional
Probab=34.50 E-value=35 Score=15.27 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf 9987999758988234677502352-59984255430
Q gi|254780398|r 47 DGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQF 82 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~ 82 (284)
....|+=||.|+..||-+++-..+. .|+.+|..+.+
T Consensus 5 ~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~ 41 (409)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF 41 (409)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 7899899991889999999999779999999189998
No 349
>KOG3311 consensus
Probab=34.26 E-value=27 Score=15.98 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=3.8
Q ss_pred CHHHHHHHHHH
Q ss_conf 31233234543
Q gi|254780398|r 167 NSPHYGRLSVL 177 (284)
Q Consensus 167 g~k~Yg~LSv~ 177 (284)
|...|.-|.+-
T Consensus 122 G~rh~~gl~vR 132 (152)
T KOG3311 122 GLRHFWGLRVR 132 (152)
T ss_pred CCEECCCCCCC
T ss_conf 40111488424
No 350
>PRK07045 putative monooxygenase; Reviewed
Probab=34.22 E-value=36 Score=15.16 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCEEEEECCCCCHHHHHHH--HCCCCEEEEECCCCCC
Q ss_conf 9879997589882346775--0235259984255430
Q gi|254780398|r 48 GITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQQF 82 (284)
Q Consensus 48 ~~~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~~~ 82 (284)
.-.|+=||+|++.||-+++ +.+. .|+.+|..+..
T Consensus 5 ~~dVlIvGaG~aGl~lA~~L~r~G~-~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGH-SVTVVERAARN 40 (388)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf 9858999928899999999986799-89999089987
No 351
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=34.18 E-value=36 Score=15.16 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=38.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 899987999758988234677502352599842554303688787532
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ 92 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~ 92 (284)
...+..++.==+|-|+|-..-++.|+ .|+|+|.++..+-+|+..+..
T Consensus 88 ~~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlEy 134 (875)
T COG1743 88 PFEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLEY 134 (875)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCC-EEEEEECCCHHHHHHHHHHHC
T ss_conf 45687402665689866358886476-368973160899999999721
No 352
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.00 E-value=37 Score=15.14 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=41.7
Q ss_pred CCCCCCEEEEECC----CCCH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9899987999758----9882-346775023525998425543036887875322001220000000143
Q gi|254780398|r 44 GSLDGITVIEIGA----GPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 44 ~~~~~~~VlEIGp----G~G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+..+++.+|=.|+ |.|. +.+.|++.+++ |+....++...+.+++........+ ++.+|+.+.+
T Consensus 3 g~L~GK~alITGaa~~~GIG~aiA~~La~~GA~-V~i~~~~e~~~~~~~~~~~~~g~~~-~~~~Dvsd~~ 70 (271)
T PRK06505 3 GLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGDALGKRVKPLAESLGSDL-VLPCDVEDIA 70 (271)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHCCCCE-EEECCCCCHH
T ss_conf 757999799979999854999999999986999-9998186688999999999649818-9983799999
No 353
>KOG2918 consensus
Probab=33.91 E-value=37 Score=15.13 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=44.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHCC-CCEEEEECCCCCCHHHHHH-HHHHHHC---CCCCCHHHHCCCCHHHHCCCCCCEE
Q ss_conf 999879997589882346775023-5259984255430368878-7532200---1220000000143155213322201
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQMLLTLG-ARKVIVIEKDQQFFPILKD-ISSQHPN---RLEIIQDDALKVDFEKFFNISSPIR 120 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~Ll~~~-~~~v~aiEiD~~~~~~l~~-~~~~~~~---~~~ii~~Dal~~d~~~~~~~~~~~~ 120 (284)
....-|+..|+|.-.|--.|+..+ ...+.-+|+|-..+-..+- .....+. -..++..|....+...+ ....|+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l--~s~~Y~ 163 (335)
T KOG2918 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDL--HSGRYH 163 (335)
T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEE--CCCCEE
T ss_conf 786599973777551233122047767632898237289887776304681566664001145323686411--167602
Q ss_pred EEE
Q ss_conf 120
Q gi|254780398|r 121 IIA 123 (284)
Q Consensus 121 vvg 123 (284)
++|
T Consensus 164 ~~g 166 (335)
T KOG2918 164 LIG 166 (335)
T ss_pred EEC
T ss_conf 652
No 354
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=33.63 E-value=37 Score=15.10 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=5.0
Q ss_pred EEECCCHHHHHH
Q ss_conf 120232246788
Q gi|254780398|r 121 IIANLPYNIGTR 132 (284)
Q Consensus 121 vvgNLPYnIss~ 132 (284)
||..+|-+...+
T Consensus 257 VI~a~p~~~~~~ 268 (430)
T TIGR03467 257 VVLAVPPRHAAS 268 (430)
T ss_pred EEECCCHHHHHH
T ss_conf 998989899986
No 355
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase; InterPro: IPR004410 Malonyl CoA-acyl carrier protein transacylase 2.3.1.39 from EC is involved in fatty acid biosynthesis and transfers the malonyl moeity from coenzyme A to acyl-carrier protein.; GO: 0004314 [acyl-carrier-protein] S-malonyltransferase activity, 0006633 fatty acid biosynthetic process.
Probab=33.50 E-value=33 Score=15.42 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=5.1
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 22467889999985
Q gi|254780398|r 126 PYNIGTRLLFNWIS 139 (284)
Q Consensus 126 PYnIss~Il~~ll~ 139 (284)
||+=...|-..|+.
T Consensus 239 ~~~~g~~~k~~L~~ 252 (295)
T TIGR00128 239 PYTNGDRIKEKLIE 252 (295)
T ss_pred HHCCHHHHHHHHHH
T ss_conf 00144789999999
No 356
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=33.47 E-value=37 Score=15.09 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=66.2
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-----HHCC-CC
Q ss_conf 99987999758988---234677502352599842554303688787532200122000000014315-----5213-32
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-----KFFN-IS 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-----~~~~-~~ 116 (284)
.+++.+|=-|.|.| ++.+.+++.++ +|+...++++-.+.+.+.+.....+...+..|..+.+-- .... .+
T Consensus 7 L~gK~alVTG~~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G 85 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAEKAVAKLRQEGIKAHAAAFNVTHKQEIEAAIEHIEKDIG 85 (254)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999899968567899999999998699-999996988999999999984498189998268999999999999999839
Q ss_pred CCEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22011202322467889-------99998520100000011020334478875301
Q gi|254780398|r 117 SPIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.--.+|.|-=.+...++ ..+.+.-+ + ..+|++-++++..|...
T Consensus 86 ~iDilVnNAG~~~~~~~~~~~~e~w~~~~~vN-----l-~g~f~~~q~~~~~m~~~ 135 (254)
T PRK08085 86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVN-----Q-TAVFLVSQAVARYMVKR 135 (254)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 98699989867888770109899999999998-----4-99999999985998873
No 357
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.40 E-value=37 Score=15.08 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=60.5
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEE-EECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----CC-
Q ss_conf 99987999758988---234677502352599-84255430368878753220012200000001431-5521----33-
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVI-VIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----NI- 115 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~-aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~~- 115 (284)
.+++.||=.|.+.| ++.+.+++.+++ |+ ....|.+-.+.+.+.+.....++..+.+|..+.+- ..+. ..
T Consensus 3 L~gK~vlITGgs~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDKNEEAANELLEEIKEVGGDAIAVKADVSSEDDVENLVEQIVEKF 81 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 89988999378458999999999987998-99981799899999999999639908999835899999999999999980
Q ss_pred CCCEEEEECCCHHHHHH-------HHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22201120232246788-------999998520100000011020334478875301
Q gi|254780398|r 116 SSPIRIIANLPYNIGTR-------LLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 116 ~~~~~vvgNLPYnIss~-------Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
+..-.+|-|--.....+ -+.+.+.-+. ...+.+-+.++..|...
T Consensus 82 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~Nl------~~~~~~~~~~~~~m~~~ 132 (247)
T PRK05565 82 GKIDILVNNAGISKFGLVTDMTDEEWDRVINVNL------TGVMRLTRYALPIMIKR 132 (247)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
T ss_conf 9984999899878999915599999999999854------78999999857988756
No 358
>PRK07035 short chain dehydrogenase; Provisional
Probab=33.21 E-value=38 Score=15.06 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=41.0
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+++.+|=-|.+.| ++.+.+++.++ +|+...++..-.+.+.+......++...+.+|..+.+
T Consensus 7 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~ 70 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEME 70 (252)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 899899958874999999999998799-8999979889999999999964995799982489999
No 359
>pfam07669 Eco57I Eco57I restriction endonuclease. Homologues of the Escherichia coli Eco57I restriction endonuclease are found in several phylogenetically diverse bacteria.
Probab=32.83 E-value=13 Score=17.86 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=9.6
Q ss_pred EEEECCCHHHHH
Q ss_conf 112023224678
Q gi|254780398|r 120 RIIANLPYNIGT 131 (284)
Q Consensus 120 ~vvgNLPYnIss 131 (284)
.||||.||..++
T Consensus 5 vVIGNPPY~~~~ 16 (106)
T pfam07669 5 VVIGNPPYQESD 16 (106)
T ss_pred EEEECCCCCCCC
T ss_conf 897089994335
No 360
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=32.61 E-value=37 Score=15.10 Aligned_cols=54 Identities=30% Similarity=0.500 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCCHHHHHH-HHCCCCEEEEECCCCCC--HHHHHHHHHHHHCCCCCC
Q ss_conf 99987999758988234677-50235259984255430--368878753220012200
Q gi|254780398|r 46 LDGITVIEIGAGPGNLTQML-LTLGARKVIVIEKDQQF--FPILKDISSQHPNRLEII 100 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT~~L-l~~~~~~v~aiEiD~~~--~~~l~~~~~~~~~~~~ii 100 (284)
.++..|.=||.|.-++-.++ +.+.+++|+.|...+.+ .+.+.+....+++ ++++
T Consensus 141 f~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~a~~~~~e~~~~~~k-I~v~ 197 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPK-IEVK 197 (555)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCC-EEEE
T ss_conf 17986999838889999999999748908999978756858999999985798-5999
No 361
>KOG0114 consensus
Probab=31.91 E-value=29 Score=15.76 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=18.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 220112023224678899999852
Q gi|254780398|r 117 SPIRIIANLPYNIGTRLLFNWISA 140 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~Il~~ll~~ 140 (284)
...-.|-||||.|||.=+..+...
T Consensus 18 nriLyirNLp~~ITseemydlFGk 41 (124)
T KOG0114 18 NRILYIRNLPFKITSEEMYDLFGK 41 (124)
T ss_pred HEEEEEECCCCCCCHHHHHHHHHC
T ss_conf 226777448865468999998614
No 362
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=31.90 E-value=40 Score=14.93 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCC------CCCCEEEEECCCCCHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHHHHC---CCCCCHH
Q ss_conf 999999997198------999879997589882346775023--52599842554303688787532200---1220000
Q gi|254780398|r 34 NILKKIAESSGS------LDGITVIEIGAGPGNLTQMLLTLG--ARKVIVIEKDQQFFPILKDISSQHPN---RLEIIQD 102 (284)
Q Consensus 34 ~i~~~iv~~~~~------~~~~~VlEIGpG~G~LT~~Ll~~~--~~~v~aiEiD~~~~~~l~~~~~~~~~---~~~ii~~ 102 (284)
.-++.+++.+.- .++-.+|+||.|.--+ .+|+-.. -...+.-|+|+.-.+.++...+.+++ .+++.
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCI-YPliG~~eYgwrfvGseid~~sl~sAk~ii~~N~~l~~~I~lr-- 135 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCI-YPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLR-- 135 (292)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC-CCCCCCEEECCEEECCCCCHHHHHHHHHHHHCCCCHHHHEEEE--
T ss_conf 7999999998743898776764788504576420-0213321212200157468778888899987090415333677--
Q ss_pred HHCCCCHHHHC----CCC-CCEEEEECCCHHHHHHH
Q ss_conf 00014315521----332-22011202322467889
Q gi|254780398|r 103 DALKVDFEKFF----NIS-SPIRIIANLPYNIGTRL 133 (284)
Q Consensus 103 Dal~~d~~~~~----~~~-~~~~vvgNLPYnIss~I 133 (284)
++-|-..++ ..+ .-..+.-|.||+=|-.=
T Consensus 136 --~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~d 169 (292)
T COG3129 136 --RQKDSDAIFNGIIGKNERYDATLCNPPFHDSAAD 169 (292)
T ss_pred --ECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf --5268543416510344333057518983020999
No 363
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=31.90 E-value=40 Score=14.93 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCCHH---HHHHHHH--------------------HCCCCCCCEEEEECCCCCHHHHHHHHCCC-----C
Q ss_conf 843365841123989---9999999--------------------71989998799975898823467750235-----2
Q gi|254780398|r 20 IPKKYMGQNFLLDLN---ILKKIAE--------------------SSGSLDGITVIEIGAGPGNLTQMLLTLGA-----R 71 (284)
Q Consensus 20 ~p~k~lGQnFL~d~~---i~~~iv~--------------------~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~-----~ 71 (284)
.+-|++.-+|.-|.. +-++|.+ .+.+..++..+|.|.|...=|+.|+..-+ .
T Consensus 28 qtpktlpP~~FYD~~GS~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ 107 (321)
T COG4301 28 QTPKTLPPKYFYDDRGSELFEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLL 107 (321)
T ss_pred CCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 69867997312336277999999616300673268999999999999760865489716896288999999752137740
Q ss_pred EEEEECCCCCCHH-HHHHHHHHHHC-CCCCCHHHH
Q ss_conf 5998425543036-88787532200-122000000
Q gi|254780398|r 72 KVIVIEKDQQFFP-ILKDISSQHPN-RLEIIQDDA 104 (284)
Q Consensus 72 ~v~aiEiD~~~~~-~l~~~~~~~~~-~~~ii~~Da 104 (284)
..+.|+++..... .++.+...+++ .+.-+.||.
T Consensus 108 ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~ 142 (321)
T COG4301 108 RYVPIDVSASILRATATAILREYPGLEVNALCGDY 142 (321)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 35540222899998999999867997676312568
No 364
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=31.85 E-value=40 Score=14.92 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=13.7
Q ss_pred EEEEECCCCCHHHHHHH--HCCCCEEEEECCCC
Q ss_conf 79997589882346775--02352599842554
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQ 80 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~ 80 (284)
.|+=||.|+|.++-++. +.+ .+|..||.+.
T Consensus 5 DviVIG~GpaG~~aA~~aa~~G-~~ValIEk~~ 36 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAG-WRVALIEQSN 36 (441)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 9899997889999999999789-9299997589
No 365
>PRK07890 short chain dehydrogenase; Provisional
Probab=31.58 E-value=40 Score=14.89 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=42.3
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=-|.+.| ++++.+++.++ +|+...++..-.+.+.+.......+...+.+|..+.+
T Consensus 3 L~gK~alVTG~s~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~ 67 (258)
T PRK07890 3 LKDKVVVVSGVGPGLGTTLAVRAAREGA-DVVLAARTAERLDEVAKQIDDLGRRALAVVTDITDEA 67 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 8998899968565899999999998799-8999979899999999999964995899981699999
No 366
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=31.56 E-value=40 Score=14.89 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=4.5
Q ss_pred EEEEECCCCC
Q ss_conf 5998425543
Q gi|254780398|r 72 KVIVIEKDQQ 81 (284)
Q Consensus 72 ~v~aiEiD~~ 81 (284)
+|+.+|..++
T Consensus 194 ~Vtvv~~~~~ 203 (460)
T PRK06292 194 KVTVFERGDR 203 (460)
T ss_pred EEEEEEECCC
T ss_conf 6999962475
No 367
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=31.17 E-value=41 Score=14.85 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=41.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCE-EEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 3658411239899999999719899987-999758988234677502352599842554303688787532200122000
Q gi|254780398|r 23 KYMGQNFLLDLNILKKIAESSGSLDGIT-VIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQ 101 (284)
Q Consensus 23 k~lGQnFL~d~~i~~~iv~~~~~~~~~~-VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~ 101 (284)
++|-+| -++.|++.+.-.++.. |-+.|||.+.|...+-. ..+|+..+.- +. | -.|+.
T Consensus 48 ~~WP~n------Pvd~iI~~lk~~p~~~vIaD~GCGdA~lA~~~~~--~~kV~SfDLv-----------a~--n-~~Vt~ 105 (214)
T pfam05148 48 KKWPVN------PLDVIIRKLKRRPGNGVIADLGCGEARIAFRKRE--FENVHSFDLV-----------AV--N-KRVIP 105 (214)
T ss_pred HHCCCC------HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCC--CCEEEEEECC-----------CC--C-CCCCC
T ss_conf 748977------7999999998489971899758865799986467--8738851325-----------68--9-88351
Q ss_pred HHHCCCCHHH
Q ss_conf 0000143155
Q gi|254780398|r 102 DDALKVDFEK 111 (284)
Q Consensus 102 ~Dal~~d~~~ 111 (284)
+|.-++.+++
T Consensus 106 cDi~~~PL~d 115 (214)
T pfam05148 106 CDMARVPLED 115 (214)
T ss_pred CCCCCCCCCC
T ss_conf 3533687887
No 368
>PRK06949 short chain dehydrogenase; Provisional
Probab=30.94 E-value=41 Score=14.83 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=63.4
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-HHC----C-CC
Q ss_conf 99987999758988---234677502352599842554303688787532200122000000014315-521----3-32
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KFF----N-IS 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-~~~----~-~~ 116 (284)
.+++.+|=-|.+.| ++.+.+++.++ +|....++.+-.+.+.+.......+...+.+|+-+.+-- .+. . .+
T Consensus 7 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~G 85 (258)
T PRK06949 7 LEGKVALVTGASSGLGQRFAQVLSQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 8999899958577999999999998799-999996988999999999996599289998268999999999999999849
Q ss_pred CCEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22011202322467889-------99998520100000011020334478875301
Q gi|254780398|r 117 SPIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.--.+|-|--.....++ ..+.+.-+ . ...+.+-++++.+|+++
T Consensus 86 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vN-----l-~g~~~~~~~~~~~mi~~ 135 (258)
T PRK06949 86 TIDILVNNSGVSTTQKLVDVTPADFEFVFDTN-----T-RGAFFVAQEVAKRMIAR 135 (258)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHH
T ss_conf 99899989988999892659999999999987-----0-99999999999999984
No 369
>TIGR01764 excise DNA binding domain, excisionase family; InterPro: IPR010093 An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This entry represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This entry identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (IPR000551 from INTERPRO).; GO: 0003677 DNA binding.
Probab=30.92 E-value=41 Score=14.82 Aligned_cols=38 Identities=5% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 788844799999981898433658411239899999999
Q gi|254780398|r 3 MNNKSHSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAE 41 (284)
Q Consensus 3 ~~~~~~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~ 41 (284)
++-+..||.+++.+.++.+-|- |.+|+++..-++.-++
T Consensus 11 Lgv~~~t~~~l~~~g~l~~~~~-G~~~ri~~~~v~~~~~ 48 (49)
T TIGR01764 11 LGVSKSTVYRLIEEGELPAYRV-GRHYRIKREDVDEYLE 48 (49)
T ss_pred CCCCHHHHHHHHHCCCCCEEEC-CCCEECCHHHHHHHHH
T ss_conf 1999057899997189850006-8602024999999871
No 370
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.57 E-value=42 Score=14.79 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCCCCCEEEEEC--C--CCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 989998799975--8--988-2346775023525998425543036887875322001220000000143
Q gi|254780398|r 44 GSLDGITVIEIG--A--GPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 44 ~~~~~~~VlEIG--p--G~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+..+++.+|=-| . |.| ++.+.+++.+++ |....+..+..+.+++...+.... .++.+|+.+-+
T Consensus 2 g~L~gK~~lVTGa~~~~GIG~aia~~la~~Ga~-v~~~~~~~~~~~~~~~~~~~~g~~-~~~~~Dv~~~~ 69 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGAE-LAFTYVVDKLEERVRKMAAELDSE-LVFRCDVASDD 69 (261)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHCCCC-EEEECCCCCHH
T ss_conf 999998899989878638999999999985999-999737615599999999873980-89988999999
No 371
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=30.38 E-value=42 Score=14.77 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=62.9
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-HHC----CC-C
Q ss_conf 99987999758988---234677502352599842554303688787532200122000000014315-521----33-2
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KFF----NI-S 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-~~~----~~-~ 116 (284)
.+++.+|=-|.+.| ++.+.|++.++ +|+...+|..-.+.+.+.......+...+.+|+.+.+-- .+. .. +
T Consensus 9 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G 87 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAVSKLG 87 (255)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999899958877899999999998799-999996988999999999996599089998368999999999999999819
Q ss_pred CCEEEEECC------CHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 220112023------2246788999998520100000011020334478875301
Q gi|254780398|r 117 SPIRIIANL------PYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 117 ~~~~vvgNL------PYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.--.+|-|- |+.++..=..+.++-+ + ...+.+-++++..|...
T Consensus 88 ~iDilVnNAG~~~~~~~d~~~~~~~~~~~~N-----l-~~~~~~~~~~~p~m~~~ 136 (255)
T PRK06113 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELN-----V-FSFFHLSQLVAPEMEKN 136 (255)
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 9889998788789987759999999999996-----4-99999999999988871
No 372
>KOG2931 consensus
Probab=30.17 E-value=42 Score=14.74 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCH--HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 12398999999997198999879997589882--3467750235259984255430368878753220012200000001
Q gi|254780398|r 29 FLLDLNILKKIAESSGSLDGITVIEIGAGPGN--LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 29 FL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~--LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
|-.=+.+++.+...++-..=..|+-+|-|.|| |++.-++- +..|.+ +-+|+.|-..
T Consensus 102 yPsmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~h-p~rV~G---------------------LvLIn~~~~a 159 (326)
T KOG2931 102 YPSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNH-PERVLG---------------------LVLINCDPCA 159 (326)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC-HHHEEE---------------------EEEEECCCCC
T ss_conf 888899998899998761744379951340099999988529-425567---------------------9998327897
Q ss_pred CCHHHHCCCCCCEEEEECCCHH-HHHHHHHHHHHH
Q ss_conf 4315521332220112023224-678899999852
Q gi|254780398|r 107 VDFEKFFNISSPIRIIANLPYN-IGTRLLFNWISA 140 (284)
Q Consensus 107 ~d~~~~~~~~~~~~vvgNLPYn-Iss~Il~~ll~~ 140 (284)
--|.++.- .++.+|+=|+ .-|+-+..++..
T Consensus 160 ~gwiew~~----~K~~s~~l~~~Gmt~~~~d~ll~ 190 (326)
T KOG2931 160 KGWIEWAY----NKVSSNLLYYYGMTQGVKDYLLA 190 (326)
T ss_pred CHHHHHHH----HHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 33899999----99877787760322118999999
No 373
>PRK07478 short chain dehydrogenase; Provisional
Probab=30.01 E-value=43 Score=14.73 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=43.2
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=-|.+.| ++.+.+++.++ +|+...++..-.+.+.+......++...+.+|..+.+
T Consensus 4 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~l~~~~~ei~~~g~~~~~~~~Dvt~~~ 68 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEA 68 (254)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 8998799958876899999999998799-9999979889999999999964990899976899999
No 374
>pfam09040 H-K_ATPase_N Gastric H+/K+-ATPase, N terminal domain. Members of this family adopt an alpha-helical conformation under hydrophobic conditions. The domain contains tyrosine residues, phosphorylation of which regulates the function of the ATPase. Additionally, the domain also interacts with various structural proteins, including the spectrin-binding domain of ankyrin III.
Probab=29.60 E-value=25 Score=16.21 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=9.6
Q ss_pred EEEEECCCCCHHH
Q ss_conf 7999758988234
Q gi|254780398|r 50 TVIEIGAGPGNLT 62 (284)
Q Consensus 50 ~VlEIGpG~G~LT 62 (284)
.-+|.|||+|.=-
T Consensus 9 ysvelgpgpggdm 21 (41)
T pfam09040 9 YSVELGPGPGGDM 21 (41)
T ss_pred EEEEECCCCCCHH
T ss_conf 8887068997107
No 375
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=29.57 E-value=43 Score=14.68 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=30.9
Q ss_pred CCCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCHH
Q ss_conf 899987999758988234--6775023525998425543036
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFFP 84 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~~ 84 (284)
...+..|-=||.|+..|| ..|++.|. .|+.+|.+++.=.
T Consensus 547 ~~tgKKVAVIGsGPAGLaAA~~Lar~Gh-~VTVFEk~~~~GG 587 (1032)
T PRK09853 547 SGSRHPVAVIGAGPAGLAAGYFLARAGH-PVTVFEREENAGG 587 (1032)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCC
T ss_conf 7889979998968899999999997799-3699815897884
No 376
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=29.50 E-value=43 Score=14.67 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHH----CC-CC
Q ss_conf 99987999758988---23467750235259984255430368878753220012200000001431-552----13-32
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKF----FN-IS 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~----~~-~~ 116 (284)
..++.+|=-|.+.| ++...+++.++ .|+...+++.-++...+.......+...+.+|+.+.+- ..+ .. .+
T Consensus 8 l~gK~alVTG~s~GIG~aiA~~la~~Ga-~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAEAGA-TIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEDGIQAMVAQIEKEVG 86 (265)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 8999899958576899999999998699-999995998999999999995499179999328999999999999999829
Q ss_pred CCEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22011202322467889-------99998520100000011020334478875301
Q gi|254780398|r 117 SPIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.--.+|.|-=.....++ ..+.+.-+ + ..++.+-++++..|..+
T Consensus 87 ~iDiLVnNAG~~~~~~~~~~~~e~~~~~~~vN-----l-~g~~~~~~~~~~~m~~~ 136 (265)
T PRK07097 87 VIDILVNNAGIIRRIPMLEMSAEDFRQVIDID-----L-NAPFIVSKAVLPSMIKK 136 (265)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHH
T ss_conf 99899989989999882659999999999986-----0-72899999999989980
No 377
>PRK06227 consensus
Probab=29.48 E-value=43 Score=14.67 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----CC-C
Q ss_conf 99987999758988---23467750235259984255430368878753220012200000001431-5521----33-2
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----NI-S 116 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~~-~ 116 (284)
.+++.+|=-|.+.| ++.+.+++.++ +|+...+|+.......+.......+...+.+|+.+.+- ..+. .. +
T Consensus 3 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G 81 (256)
T PRK06227 3 LSGKVAIVTGGGQGIGAAIAQTFAENGA-KVVIADIDEEAGLEREEMLRSNGLDALFVKTDVSDEEDVKNMVRKTVERYG 81 (256)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 9998899958668899999999998799-999996988899999999995599189998168999999999999999829
Q ss_pred CCEEEEECCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22011202322467889-------99998520100000011020334478875301
Q gi|254780398|r 117 SPIRIIANLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 117 ~~~~vvgNLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
.--.+|-|-=.....++ ..+.+.-+ + ..++.+.++++..|...
T Consensus 82 ~iDiLVNNAGi~~~~~~~~~~~e~w~~~~~vN-----l-~g~f~~~~~~~p~m~~~ 131 (256)
T PRK06227 82 GIDILINNAGIFSGKSIFERTLEEWERVIRVN-----L-TGPYLCSKYAAEEMIKN 131 (256)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 99799989989999890349899999999998-----2-99999999999999984
No 378
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=28.97 E-value=42 Score=14.78 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=21.4
Q ss_pred HHHHEEEH-HHHHHHHHCCC-H-HHHHHHHHHHCCCCCEEEECCCCCCEE
Q ss_conf 11020334-47887530123-1-233234543201332012000110000
Q gi|254780398|r 149 SLTLLFQK-EVGERITAQKN-S-PHYGRLSVLTGWRTKATMMFDISPHVF 195 (284)
Q Consensus 149 ~~vlmvQk-EvA~Rl~a~pg-~-k~Yg~LSv~~q~~~~v~~~~~V~~~~F 195 (284)
+++.+=.. ||||=.+.=+| | .+|+ ++.==-.|++-++=-|++|
T Consensus 196 ~A~~~A~~a~~aEV~VvMHG~tsD~yc----~~HRGVkVRKMHTSRRDAF 241 (413)
T TIGR02153 196 AAVRAATSAPIAEVVVVMHGETSDTYC----LVHRGVKVRKMHTSRRDAF 241 (413)
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCCEE----EEECCCEEECCCCCCHHHH
T ss_conf 999983369710038884012488679----9965823503658810255
No 379
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=28.84 E-value=45 Score=14.60 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCCH
Q ss_conf 99987999758988234--677502352599842554303
Q gi|254780398|r 46 LDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQFF 83 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~~ 83 (284)
..+..|-=||.|+..|| ..|++.|. .|+.+|.+++.=
T Consensus 535 ~~gkKVAVIGsGPAGLaAA~~Lar~Gh-~VTVFEk~~~~G 573 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPG 573 (1012)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCC
T ss_conf 899889998977899999999997799-569981589788
No 380
>COG5085 Predicted membrane protein [Function unknown]
Probab=28.81 E-value=39 Score=14.98 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=41.4
Q ss_pred CHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH--HHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHH
Q ss_conf 00000014315521332220112023224678--89999985201000000110203344788753012312332
Q gi|254780398|r 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGT--RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 (284)
Q Consensus 100 i~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss--~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg 172 (284)
--.|++.+..+..+.++ +.=++-.||-+++ +++++.+.....-..+-..++++|+++.-|+-.+.-.-.|-
T Consensus 55 ~~s~~~~~~~~k~w~p~--~~n~~R~p~vl~gYLQLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q 127 (230)
T COG5085 55 YPSDALGLATKKAWRPS--VVNIARVPVVLIGYLQLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQ 127 (230)
T ss_pred CHHHHHCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62355402577755778--65220045999999999999999999999999999998877778899999999999
No 381
>KOG4503 consensus
Probab=28.81 E-value=39 Score=14.98 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=41.4
Q ss_pred CHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH--HHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHH
Q ss_conf 00000014315521332220112023224678--89999985201000000110203344788753012312332
Q gi|254780398|r 100 IQDDALKVDFEKFFNISSPIRIIANLPYNIGT--RLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG 172 (284)
Q Consensus 100 i~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss--~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg 172 (284)
--.|++.+..+..+.++ +.=++-.||-+++ +++++.+.....-..+-..++++|+++.-|+-.+.-.-.|-
T Consensus 55 ~~s~~~~~~~~k~w~p~--~~n~~R~p~vl~gYLQLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q 127 (230)
T KOG4503 55 YPSDALGLATKKAWRPS--VVNIARVPVVLIGYLQLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQ 127 (230)
T ss_pred CHHHHHCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62355402577755778--65220045999999999999999999999999999998877778899999999999
No 382
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.65 E-value=45 Score=14.58 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=40.7
Q ss_pred CCCCCCEEEEECC----CCCH-HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9899987999758----9882-346775023525998425543036887875322001220000000143
Q gi|254780398|r 44 GSLDGITVIEIGA----GPGN-LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 44 ~~~~~~~VlEIGp----G~G~-LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+..+++.+|=-|. |.|. +.+.+++.++ +|+....+++..+.+.+... .+...+.+|+.+-+
T Consensus 3 g~L~gK~~lVTGaag~~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~ 68 (252)
T PRK06079 3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVD---EEDLLVECDVASDE 68 (252)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCC---CCCEEEEEECCCHH
T ss_conf 61399889998999987799999999998699-99998488799999998508---88659995189999
No 383
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=28.57 E-value=45 Score=14.57 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=5.5
Q ss_pred CCCEEEEEC-CCCCHH
Q ss_conf 998799975-898823
Q gi|254780398|r 47 DGITVIEIG-AGPGNL 61 (284)
Q Consensus 47 ~~~~VlEIG-pG~G~L 61 (284)
..-.++-.| .|++.|
T Consensus 47 n~VGl~tmag~~~~Vl 62 (187)
T cd01452 47 NNVGLMTMAGNSPEVL 62 (187)
T ss_pred CCEEEEEECCCCCEEE
T ss_conf 3113576158986689
No 384
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.57 E-value=45 Score=14.57 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=14.4
Q ss_pred EEEEECCCCCHHHHHHHH--CCCCEEEEECCC
Q ss_conf 799975898823467750--235259984255
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLT--LGARKVIVIEKD 79 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD 79 (284)
.|+=||.|+|.+|-++-. .+ .+|..||..
T Consensus 6 DvvVIGgGpaG~~aA~~aa~~G-~kV~liE~~ 36 (472)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLG-LETVCVERY 36 (472)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 7899998889999999999789-969999637
No 385
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=28.47 E-value=45 Score=14.56 Aligned_cols=74 Identities=26% Similarity=0.319 Sum_probs=44.9
Q ss_pred HHHHHHHHCCCCCCCEEE---EECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHH---HHHCCCCCCHHHHCCC
Q ss_conf 999999971989998799---9758988234677502352-59984255430368878753---2200122000000014
Q gi|254780398|r 35 ILKKIAESSGSLDGITVI---EIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISS---QHPNRLEIIQDDALKV 107 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~Vl---EIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~---~~~~~~~ii~~Dal~~ 107 (284)
+++..-..+.-.+..+|| +=|+|.-+|-++++...+. .+-.||+++.-...|..++. ..+-+|-+. +|=|.|
T Consensus 40 l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~Lp~i~~~l~~~~~kFIiF-~DDLSF 118 (248)
T pfam05673 40 LLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGDLPDIVDLLRGRPYRFILF-CDDLSF 118 (248)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHCCCCCEEEE-ECCCCC
T ss_conf 9999999980898613676768989888999999998631495699987888721999999996499757999-635576
Q ss_pred CH
Q ss_conf 31
Q gi|254780398|r 108 DF 109 (284)
Q Consensus 108 d~ 109 (284)
+-
T Consensus 119 e~ 120 (248)
T pfam05673 119 EE 120 (248)
T ss_pred CC
T ss_conf 78
No 386
>KOG4212 consensus
Probab=28.19 E-value=46 Score=14.53 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=24.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHH
Q ss_conf 133222011202322467889999985201000000110203344
Q gi|254780398|r 113 FNISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKE 157 (284)
Q Consensus 113 ~~~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkE 157 (284)
.++..+-.+||||-|++.+.-|.+-+..... .+.+-|-+-||
T Consensus 211 ~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk---v~~vdf~idKe 252 (608)
T KOG4212 211 SPPLHNKVFVANLDYKVGNKKLKQVFGMAGK---VQSVDFSIDKE 252 (608)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHCCCEE---EEEECEEECCC
T ss_conf 8876640366123445465789987441102---55501004246
No 387
>PRK13984 putative oxidoreductase; Provisional
Probab=28.08 E-value=46 Score=14.52 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCC
Q ss_conf 99987999758988234--67750235259984255430
Q gi|254780398|r 46 LDGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 (284)
Q Consensus 46 ~~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~ 82 (284)
..++.|==||+|+..|| ..|++.|. .|+.+|.++..
T Consensus 281 ~tGKKVAVIGsGPAGLaaA~~Lar~Gh-~VtVFE~~~~~ 318 (604)
T PRK13984 281 KKGKKVAIVGSGPAGLSAAYFLATMGY-EVEVYESLSKP 318 (604)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 789989998986899999999998698-68997456778
No 388
>smart00362 RRM_2 RNA recognition motif.
Probab=28.05 E-value=34 Score=15.35 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=17.3
Q ss_pred EEEECCCHHHHHHHHHHHHHH
Q ss_conf 112023224678899999852
Q gi|254780398|r 120 RIIANLPYNIGTRLLFNWISA 140 (284)
Q Consensus 120 ~vvgNLPYnIss~Il~~ll~~ 140 (284)
..|+|||+++|..-|..++..
T Consensus 2 i~I~nlp~~~t~~~l~~~f~~ 22 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSK 22 (72)
T ss_pred EEECCCCCCCCHHHHHHHHHH
T ss_conf 899189998989999999998
No 389
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=27.99 E-value=46 Score=14.51 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=12.9
Q ss_pred CEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCC
Q ss_conf 879997589882346--775023525998425543
Q gi|254780398|r 49 ITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQ 81 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~ 81 (284)
+.++=||.|.-++-. .+.+.+ .+|+.+|..++
T Consensus 176 k~v~ViGgG~ig~E~A~~~~~lG-~~Vtii~~~~~ 209 (464)
T PRK05976 176 KSLVVVGGGYIGLEWGSMLRKFG-VEVTVVEAADR 209 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECCC
T ss_conf 55999899689999999999539-86999985365
No 390
>KOG2078 consensus
Probab=27.95 E-value=28 Score=15.84 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCHHHHCCC
Q ss_conf 8999879997589882346775023525998425543036887875322---00122000000014
Q gi|254780398|r 45 SLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQH---PNRLEIIQDDALKV 107 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~---~~~~~ii~~Dal~~ 107 (284)
..+++.|-.+=+|-|-.....++.+| .|+|-+..++.++.|+....-+ +.++++++-||-.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCCCCHHHHHHCCCCCCCCCHHHCCC-EEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHH
T ss_conf 58741334440476743350222585-899347997899999975653665613636644618887
No 391
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=27.58 E-value=47 Score=14.46 Aligned_cols=70 Identities=30% Similarity=0.374 Sum_probs=46.7
Q ss_pred CCC-CCCCCCCCCHHHHH--HHHHHCCCCCCCEEEEECCCC-CHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHH
Q ss_conf 433-65841123989999--999971989998799975898-8234677502-3525998425543036887875
Q gi|254780398|r 21 PKK-YMGQNFLLDLNILK--KIAESSGSLDGITVIEIGAGP-GNLTQMLLTL-GARKVIVIEKDQQFFPILKDIS 90 (284)
Q Consensus 21 p~k-~lGQnFL~d~~i~~--~iv~~~~~~~~~~VlEIGpG~-G~LT~~Ll~~-~~~~v~aiEiD~~~~~~l~~~~ 90 (284)
|.. ..-+=+|.++-.+- -.+.......+++|+=+|+|+ |-++..+++. ++..|+++++++.=.+.+++..
T Consensus 139 pd~~~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 139 PDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCCHHHECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC
T ss_conf 999975532015809989999984245788998999888899999999998769827999799989999999877
No 392
>PRK07109 short chain dehydrogenase; Provisional
Probab=27.27 E-value=48 Score=14.43 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=44.5
Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
...+++.|+=-|+..| ++.+.+++.++ +|+++-+++.-.+.+.+.......+...+.+|.-+.+
T Consensus 4 k~l~~KvVvITGASsGIGra~A~~fA~~Ga-~Vvl~aR~~~~L~~~a~e~~~~G~~~~~~~~DVsd~~ 70 (338)
T PRK07109 4 KPLGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEGLAAEIRAAGGEALAVVADVADAE 70 (338)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCHH
T ss_conf 606989899948434999999999998799-8999989999999999999963981899980179999
No 393
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=27.17 E-value=48 Score=14.42 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=12.0
Q ss_pred EEEECCCHHHHHHHHHH
Q ss_conf 11202322467889999
Q gi|254780398|r 120 RIIANLPYNIGTRLLFN 136 (284)
Q Consensus 120 ~vvgNLPYnIss~Il~~ 136 (284)
.||..+|-+...+++..
T Consensus 266 ~VV~a~p~~~~~~ll~~ 282 (452)
T PRK11883 266 AVIVAVPHPVLPSLLAE 282 (452)
T ss_pred EEEECCCHHHHHHHHCC
T ss_conf 89989898999987455
No 394
>KOG3201 consensus
Probab=27.10 E-value=24 Score=16.28 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 89999999971989998799975898823467750235--2599842554303688787532200122000000014315
Q gi|254780398|r 33 LNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGA--RKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 33 ~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~--~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
+.++-.+.+..+.-.+..|+|.|.|.-.|..-+++..+ +.|..-+=++.-+..+++....+. -..+-.+-++++++.
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~-~s~~tsc~vlrw~~~ 93 (201)
T KOG3201 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM-ASSLTSCCVLRWLIW 93 (201)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCC-CCCCCEEHHHHHHHH
T ss_conf 9999999806067767889872674465545520453587358871697899997999985120-025650003478776
No 395
>PRK07774 short chain dehydrogenase; Provisional
Probab=26.91 E-value=48 Score=14.39 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----C-CCC
Q ss_conf 9987999758988---23467750235259984255430368878753220012200000001431-5521----3-322
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----N-ISS 117 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~-~~~ 117 (284)
+++.+|=-|.+.| ++.+.|++.++ +|+...++.+-.+.+.+.......+...+.+|+.+-+- .++. . .+.
T Consensus 5 ~gK~alVTGgs~GiG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~fG~ 83 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADRTVSAFGG 83 (250)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 998899979768899999999998699-9999979889999999999855984999982589999999999999998399
Q ss_pred CEEEEECC------CHH----HHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCC
Q ss_conf 20112023------224----67889999985201000000110203344788753012
Q gi|254780398|r 118 PIRIIANL------PYN----IGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQK 166 (284)
Q Consensus 118 ~~~vvgNL------PYn----Iss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~p 166 (284)
--.+|-|- |+. ++-.-..+.+..+ + ...|.+-++++..|..+.
T Consensus 84 iDilVNnAg~~~~~~~~~~~~~~~~~w~~~~~vN-----l-~~~f~~~~~~~~~m~~~~ 136 (250)
T PRK07774 84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVN-----L-DGALVCTRAVYKHMAKRG 136 (250)
T ss_pred CCEEEECCCCCCCCCCCCHHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHCC
T ss_conf 9899988843578999742129999999999998-----8-999999999999999829
No 396
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=26.86 E-value=48 Score=14.38 Aligned_cols=11 Identities=9% Similarity=0.585 Sum_probs=4.7
Q ss_pred EEEEECCCCCC
Q ss_conf 59984255430
Q gi|254780398|r 72 KVIVIEKDQQF 82 (284)
Q Consensus 72 ~v~aiEiD~~~ 82 (284)
+|+.+|..+++
T Consensus 194 ~Vtlie~~~~l 204 (452)
T TIGR03452 194 RVTIVNRSTKL 204 (452)
T ss_pred EEEEEEECCCC
T ss_conf 49999967622
No 397
>TIGR02517 type_II_gspD general secretion pathway protein D; InterPro: IPR013356 In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (IPR013355 from INTERPRO) and to the type III secretion system pore YscC/HrcC (IPR003522 from INTERPRO).; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex, 0019867 outer membrane.
Probab=26.85 E-value=14 Score=17.78 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCCCC-CCCCCCCCCCHHHH-HHH
Q ss_conf 79999998189843-36584112398999-999
Q gi|254780398|r 9 SLKTILSHYKIIPK-KYMGQNFLLDLNIL-KKI 39 (284)
Q Consensus 9 ~i~~ll~~~~~~p~-k~lGQnFL~d~~i~-~~i 39 (284)
+|+++++. + . +-+|+||++||++- -+|
T Consensus 7 di~~~v~~--i--sG~~tGknfiiDP~Vk~Gki 35 (697)
T TIGR02517 7 DISTVVKA--I--SGDLTGKNFIIDPRVKGGKI 35 (697)
T ss_pred CHHHHHHH--H--HHHHCCCEEEECCCCCCCEE
T ss_conf 48999999--8--67744940887688632058
No 398
>pfam06881 Elongin_A RNA polymerase II transcription factor SIII (Elongin) subunit A. This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin.
Probab=26.46 E-value=23 Score=16.36 Aligned_cols=16 Identities=13% Similarity=0.386 Sum_probs=14.2
Q ss_pred EECCCHHHHHHHHHHH
Q ss_conf 2023224678899999
Q gi|254780398|r 122 IANLPYNIGTRLLFNW 137 (284)
Q Consensus 122 vgNLPYnIss~Il~~l 137 (284)
||++||.+--|||.++
T Consensus 4 vG~vPy~ll~piL~~~ 19 (108)
T pfam06881 4 VGGVPFELLEPVLEKC 19 (108)
T ss_pred CCCCCHHHHHHHHCCC
T ss_conf 5679889999998319
No 399
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=26.19 E-value=29 Score=15.79 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=25.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCC------H-HHHEEEHHHHHHHHH
Q ss_conf 011202322467889999985201000000------1-102033447887530
Q gi|254780398|r 119 IRIIANLPYNIGTRLLFNWISADTWPPFWE------S-LTLLFQKEVGERITA 164 (284)
Q Consensus 119 ~~vvgNLPYnIss~Il~~ll~~~~~~~~~~------~-~vlmvQkEvA~Rl~a 164 (284)
.+++.+||-+|..|+|. +++++.++..-. . .+=|||.|.++++--
T Consensus 362 ~~~f~~LP~~I~~QLLn-il~RDpHGNv~VS~IeTEKLLi~lV~~~l~~~~~~ 413 (566)
T TIGR02477 362 KALFESLPETIRKQLLN-ILDRDPHGNVQVSQIETEKLLIELVQTELAKRKKE 413 (566)
T ss_pred HHHHHHCCHHHHHHHHH-HHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 99974078679999987-52679988537421127899999999999999863
No 400
>pfam04572 Gb3_synth Alpha 1,4-glycosyltransferase conserved region. The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilize UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region.
Probab=26.01 E-value=37 Score=15.11 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=8.5
Q ss_pred ECCCCCCEECCCCC
Q ss_conf 00011000010578
Q gi|254780398|r 187 MFDISPHVFFPSPK 200 (284)
Q Consensus 187 ~~~V~~~~F~P~Pk 200 (284)
+...||++|||.|-
T Consensus 58 ~~vlp~~aFYpI~~ 71 (135)
T pfam04572 58 FTVLPPDAFYPIPW 71 (135)
T ss_pred EEECCCCCEEECCH
T ss_conf 48708324673576
No 401
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=25.83 E-value=43 Score=14.72 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHCCCCCCCCHHCCCHHHHHHHH
Q ss_conf 997877746571208999999999
Q gi|254780398|r 250 LHQAGIETNLRAENLSIEDFCRIT 273 (284)
Q Consensus 250 l~~~~i~~~~R~e~Ls~~~~~~L~ 273 (284)
|++=.|-.+--|++++-+.+-+|+
T Consensus 229 L~~G~iVFDG~p~~~~~~~~~~iY 252 (253)
T TIGR02315 229 LKAGEIVFDGAPSELDDEVLRRIY 252 (253)
T ss_pred HHCCCEEECCCHHHHHHHHHHHHC
T ss_conf 666721453785564299999845
No 402
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase; InterPro: IPR012817 Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, IPR012801 from INTERPRO, 1.13.11.1 from EC. Note: a number of annotated database entries for members of this family have EC numbers that refers to IPR012801 from INTERPRO; whereas members of this family acts in pathways for the biodegradation of chlorinated aromatic compounds.; GO: 0005506 iron ion binding, 0018575 chlorocatechol 12-dioxygenase activity, 0006725 aromatic compound metabolic process.
Probab=25.72 E-value=32 Score=15.51 Aligned_cols=173 Identities=15% Similarity=0.240 Sum_probs=89.4
Q ss_pred HHHHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC--HHHHHHHHCCCCEEEEECCCCCCH--
Q ss_conf 79999998189843-3658411239899999999719899987999758988--234677502352599842554303--
Q gi|254780398|r 9 SLKTILSHYKIIPK-KYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPG--NLTQMLLTLGARKVIVIEKDQQFF-- 83 (284)
Q Consensus 9 ~i~~ll~~~~~~p~-k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G--~LT~~Ll~~~~~~v~aiEiD~~~~-- 83 (284)
.||++|.++++.-- =+=|=+||+.-.=+..+.=.++..=+.+|.||-.+.| .-|.+-++ ||..+ |--+-..
T Consensus 14 avR~~L~~heVT~~EYr~g~~Yl~~v~eagE~pLl~DvFfnsTi~~~~~~~Gi~~gS~~aiq-GPYF~---~~AP~v~Gk 89 (258)
T TIGR02465 14 AVRDVLVRHEVTEDEYRTGVQYLMKVAEAGETPLLLDVFFNSTIVEIENRKGISRGSTSAIQ-GPYFL---EDAPLVEGK 89 (258)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEECCCCCCCCCCHHCC-CCCCC---CCCCEECCC
T ss_conf 99998740668847899999998864302522677766310203543125762547600205-88311---688600378
Q ss_pred -HHHHHHHH-HHHCCCCCCHHHHCCCC-----------H---------------H--HHC------CCCCCE--EEEECC
Q ss_conf -68878753-22001220000000143-----------1---------------5--521------332220--112023
Q gi|254780398|r 84 -PILKDISS-QHPNRLEIIQDDALKVD-----------F---------------E--KFF------NISSPI--RIIANL 125 (284)
Q Consensus 84 -~~l~~~~~-~~~~~~~ii~~Dal~~d-----------~---------------~--~~~------~~~~~~--~vvgNL 125 (284)
+.|+-.-. .+..++ ++.|.+...+ | | +++ ...+.+ +=+-=.
T Consensus 90 P~~L~~yd~D~~~P~l-~~~G~V~~~~G~~v~gAvIDVWHSTPDG~YSGfhdniP~q~~YRGkl~t~~dGsyevrt~~PV 168 (258)
T TIGR02465 90 PGTLKTYDTDDHKPRL-LIRGTVRDLSGEPVAGAVIDVWHSTPDGKYSGFHDNIPDQDYYRGKLVTAADGSYEVRTTMPV 168 (258)
T ss_pred CCCCCCCCCCCCCCEE-EEEEEEECCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCC
T ss_conf 5636620057889806-887778515785643747875405788886676766786421355156548887578741436
Q ss_pred CHHH-----HHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCC
Q ss_conf 2246-----78899999852010000001102033447887530123123323454320133201200011000010578
Q gi|254780398|r 126 PYNI-----GTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPK 200 (284)
Q Consensus 126 PYnI-----ss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~Pk 200 (284)
||.| |.++|..++..+. |+-||+=+. +-.+|- =.+.+|+||+=- --|.-.|=. .
T Consensus 169 PY~IP~~GPtG~LLe~YlG~HS----WRPAHvH~k-------v~adG~-----~~L~TQ~YFEGg--~y~DdDcC~---G 227 (258)
T TIGR02465 169 PYQIPDAGPTGALLETYLGRHS----WRPAHVHYK-------VRADGY-----RPLTTQAYFEGG--EYVDDDCCN---G 227 (258)
T ss_pred CCCCCCCCCCHHHHHHHCCCCC----CCCCCEEEE-------ECCCCC-----CCCCCEEEECCC--CCCCCCCCC---C
T ss_conf 6417877760578875602667----776522588-------716988-----411010132278--501555578---8
Q ss_pred CCEEEEE
Q ss_conf 7578873
Q gi|254780398|r 201 VTSTVIH 207 (284)
Q Consensus 201 VdS~vi~ 207 (284)
|.|.+|.
T Consensus 228 V~SeLi~ 234 (258)
T TIGR02465 228 VKSELIT 234 (258)
T ss_pred CCCCEEE
T ss_conf 8855430
No 403
>PRK06500 short chain dehydrogenase; Provisional
Probab=25.61 E-value=51 Score=14.24 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC-HHHHCC----C-
Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143-155213----3-
Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD-FEKFFN----I- 115 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d-~~~~~~----~- 115 (284)
..+++++|=.|.+.| ++.+.+++.++ +|+...+|++-++.+.+.+ ..+...+.+|..+.+ ..++.+ .
T Consensus 3 rl~gK~~lITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFAAEGA-RVAITGRDAATLEAARAEL---GEDALVIRNDAGSVAAQRALAQALAEAG 78 (249)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 98998899937687899999999998799-9999969989999999985---8975999951799999999999999976
Q ss_pred CCCEEEEECCCHHHHHHH
Q ss_conf 222011202322467889
Q gi|254780398|r 116 SSPIRIIANLPYNIGTRL 133 (284)
Q Consensus 116 ~~~~~vvgNLPYnIss~I 133 (284)
+.--.+|-|--+..-.++
T Consensus 79 g~iDiLvnnAG~~~~~~~ 96 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPL 96 (249)
T ss_pred CCCCEEEECCCCCCCCCH
T ss_conf 999899989987899991
No 404
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.49 E-value=51 Score=14.23 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=43.5
Q ss_pred CCCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9899987999758988---23467750235259984255-43036887875322001220000000143
Q gi|254780398|r 44 GSLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKD-QQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 44 ~~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD-~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+..+++.++=.|.+.| ++.+.+++.++ +|+...+. ....+.+.+.......++..+..|+.+.+
T Consensus 3 ~~LkgK~~lITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 70 (250)
T PRK12825 3 GSLSGRVALVTGAARGIGRAIALRLAAAGA-DVIVHPPSDEAAAEETVAAVEALGRRAQAVQADVTDAA 70 (250)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHH
T ss_conf 660978899938955899999999998799-89999798878999999999853994899994189999
No 405
>PRK05868 hypothetical protein; Validated
Probab=25.47 E-value=51 Score=14.23 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=25.0
Q ss_pred CEEEEECCCCCHHHHHHHH--CCCCEEEEECCCCCCHH
Q ss_conf 8799975898823467750--23525998425543036
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQFFP 84 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD~~~~~ 84 (284)
..||=+|+|.+.||-++.- .+. .|+.+|..+.+-+
T Consensus 2 ~kVlIvGaGiAGlalA~~L~r~G~-~VtV~Er~p~~r~ 38 (372)
T PRK05868 2 KTVLVSGASVAGTAAAYWLGRHGY-SVTMVERHPGLRP 38 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCCCC
T ss_conf 999998988899999999985899-8899957999888
No 406
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=25.43 E-value=51 Score=14.22 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=7.8
Q ss_pred EEECCCHHHHHHHHHHHHHHH
Q ss_conf 120232246788999998520
Q gi|254780398|r 121 IIANLPYNIGTRLLFNWISAD 141 (284)
Q Consensus 121 vvgNLPYnIss~Il~~ll~~~ 141 (284)
+|--||= |-..++..+.+..
T Consensus 124 ~iEvLPG-v~Pkvi~~i~~~t 143 (181)
T COG1954 124 FIEVLPG-VMPKVIKEITEKT 143 (181)
T ss_pred EEEECCC-CCHHHHHHHHHHC
T ss_conf 7988675-4399999998755
No 407
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=25.21 E-value=41 Score=14.81 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=79.1
Q ss_pred HHHHHHHCCCC-CCCE-EEEECCCC--CHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH
Q ss_conf 99999971989-9987-99975898--8234677502352-599842554303688787532200122000000014315
Q gi|254780398|r 36 LKKIAESSGSL-DGIT-VIEIGAGP--GNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE 110 (284)
Q Consensus 36 ~~~iv~~~~~~-~~~~-VlEIGpG~--G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~ 110 (284)
+-.|++.++.. +-|. ++=||-|- -.+|.+|..+.++ +++.||-+-. +-+..-+.... =+++-+ .+
T Consensus 159 a~Eil~ql~~~~k~D~V~~pVGGGGLisG~~~yl~~~s~~TkiiGvEP~GA--Psm~~sL~~ge-vvTL~k-------iD 228 (415)
T TIGR02079 159 AVEILEQLEEETKIDYVVVPVGGGGLISGVTSYLKEKSPKTKIIGVEPEGA--PSMKASLEAGE-VVTLDK-------ID 228 (415)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCC-CEEECC-------CC
T ss_conf 566775058676776899847740578889998731178641787468864--88999996489-674136-------78
Q ss_pred HHCCCCCCEEEEECCCHHHHHHHHH--HHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCC-EEEE
Q ss_conf 5213322201120232246788999--998520100000011020334478875301231233234543201332-0120
Q gi|254780398|r 111 KFFNISSPIRIIANLPYNIGTRLLF--NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTK-ATMM 187 (284)
Q Consensus 111 ~~~~~~~~~~vvgNLPYnIss~Il~--~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~-v~~~ 187 (284)
+|-+ +.-.+=||.|-|++.-.++. .+..- ........|.=|+|+| =|+|.|. |+|||..=-.+. -++
T Consensus 229 ~FVD-GAAV~rvG~LnF~~~k~~~d~v~~~~v-~EGaVC~tiLdlYn~E---giVaEPA----GALSiAAL~~~~r~ei- 298 (415)
T TIGR02079 229 KFVD-GAAVKRVGDLNFKALKKVVDEVEVTLV-PEGAVCSTILDLYNLE---GIVAEPA----GALSIAALEELSREEI- 298 (415)
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHCCEEEEEC-CCCCHHHHHHHHHHCC---CEEEECC----HHHHHHHHHHHCHHCC-
T ss_conf 5304-178987866889999876501475863-7985246678854168---2698151----3667999875122004-
Q ss_pred CCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf 0011000010578757887301258
Q gi|254780398|r 188 FDISPHVFFPSPKVTSTVIHFIPHL 212 (284)
Q Consensus 188 ~~V~~~~F~P~PkVdS~vi~l~pk~ 212 (284)
=+++||++.---
T Consensus 299 -------------~gKTVVC~vSGG 310 (415)
T TIGR02079 299 -------------KGKTVVCVVSGG 310 (415)
T ss_pred -------------CCCEEEEEEECC
T ss_conf -------------697279995277
No 408
>KOG0108 consensus
Probab=25.14 E-value=41 Score=14.84 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=3.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 39899999999
Q gi|254780398|r 31 LDLNILKKIAE 41 (284)
Q Consensus 31 ~d~~i~~~iv~ 41 (284)
.|...+..-++
T Consensus 68 ~d~e~a~~Air 78 (435)
T KOG0108 68 TDEETAERAIR 78 (435)
T ss_pred CCHHHHHHHHH
T ss_conf 77677999998
No 409
>PRK05876 short chain dehydrogenase; Provisional
Probab=25.02 E-value=52 Score=14.17 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
..++.++=-|.+.| ++.+.+++.++ +|+...+|..-.+...+.+.....++..+.+|..+.+
T Consensus 4 ~~gKvavITGaasGIG~a~A~~la~~Ga-~Vvi~d~~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~ 68 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHRE 68 (275)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 8998799928266999999999998799-8999979889999999999826984799978889999
No 410
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=24.99 E-value=52 Score=14.17 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=11.3
Q ss_pred EEEEECCCCCHHH--HHHHHCCCCEEEEECCCCC
Q ss_conf 7999758988234--6775023525998425543
Q gi|254780398|r 50 TVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQ 81 (284)
Q Consensus 50 ~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~ 81 (284)
.++=||.|.-++- ..+...+ .+|+.+|..++
T Consensus 178 ~vvIIGgG~ig~E~A~~~~~lG-~~Vtiv~~~~~ 210 (465)
T PRK05249 178 SLIIYGAGVIGCEYASIFRGLG-VKVDLINTRDR 210 (465)
T ss_pred EEEEECCCCCHHHHHHHHHHHC-CEEEEEECCCC
T ss_conf 5999999821799999999609-87789721660
No 411
>pfam09012 FeoC FeoC like transcriptional regulator. This family contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependant transcriptional repressor.
Probab=24.85 E-value=53 Score=14.15 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 4799999981898433658411239899999999719
Q gi|254780398|r 8 HSLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSG 44 (284)
Q Consensus 8 ~~i~~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~ 44 (284)
..+|+.++.++-...+.|.+||=.++..++-|.+..-
T Consensus 3 ~~lr~~l~~~g~~s~~~Ls~~f~~~~~~v~~ML~~wi 39 (68)
T pfam09012 3 TELKQYLQERGRASLAELARHFKMSPDAVEAMLEVWI 39 (68)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8999999991984799999897939999999999999
No 412
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=24.85 E-value=53 Score=14.15 Aligned_cols=53 Identities=15% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCCCHH----HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCCCC
Q ss_conf 898823----46775023525998425543036887875322--001220000000143
Q gi|254780398|r 56 AGPGNL----TQMLLTLGARKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALKVD 108 (284)
Q Consensus 56 pG~G~L----T~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~~d 108 (284)
-|.|.+ ++.|++.+++.|+.+..|..-...++..+... ..+++++.+|..+.+
T Consensus 5 GGaGFIGS~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~~~~~~~~DI~D~~ 63 (280)
T pfam02719 5 GGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDPKLRFFIGDVRDRE 63 (280)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 48867999999999968998899990887427789999886267898389981168989
No 413
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.73 E-value=53 Score=14.14 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=39.5
Q ss_pred CCCCEEEEECC----CCC-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 99987999758----988-2346775023525998425543036887875322001220000000143
Q gi|254780398|r 46 LDGITVIEIGA----GPG-NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGp----G~G-~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
.+++.+|=.|+ |.| ++.+.+++.++ +|....++....+.+++...+... -.++.+|+.+-+
T Consensus 3 L~GK~alITGaag~~GIG~aiA~~la~~GA-~V~i~~~~~~~~~~~~~l~~~~g~-~~~~~~Dvs~~~ 68 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNDALKKRVEPIAQELGS-PYVYELDVSKEE 68 (274)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC-CEEEEECCCCHH
T ss_conf 899879998999983799999999998699-999984887899999999986299-769990289999
No 414
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=24.58 E-value=47 Score=14.49 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHHHHHH--CCCCEEEEECCCCCC
Q ss_conf 799975898823467750--235259984255430
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQF 82 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD~~~ 82 (284)
.|+=||.| +.|+-++.. .++ +|+.+|+...+
T Consensus 11 DVVVvG~G-aGl~AA~~Aa~~Ga-~VivlEK~~~~ 43 (515)
T PRK12837 11 DVVVAGSG-GGVAGAYTAAREGL-SVALVEATDKF 43 (515)
T ss_pred CEEEECHH-HHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf 97998906-99999999998799-88999788988
No 415
>pfam00698 Acyl_transf_1 Acyl transferase domain.
Probab=24.46 E-value=47 Score=14.44 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=7.0
Q ss_pred ECCCCCHHHHH
Q ss_conf 75898823467
Q gi|254780398|r 54 IGAGPGNLTQM 64 (284)
Q Consensus 54 IGpG~G~LT~~ 64 (284)
+|-..|-++-.
T Consensus 88 ~GHSlGE~aA~ 98 (319)
T pfam00698 88 VGHSLGEIAAA 98 (319)
T ss_pred EECCCCHHHHH
T ss_conf 66370489999
No 416
>PRK07326 short chain dehydrogenase; Provisional
Probab=24.35 E-value=54 Score=14.10 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=50.3
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----C-CCC
Q ss_conf 9987999758988---23467750235259984255430368878753220012200000001431-5521----3-322
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----N-ISS 117 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~-~~~ 117 (284)
+|+.+|=-|.+.| ++.+.+++.++ +|+...+|..-.+.+.+.+.. .++..+.+|+.+.+- ..+. . .+.
T Consensus 4 ~GKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~--~~~~~~~~Dv~d~~~v~~~v~~~~~~~G~ 80 (235)
T PRK07326 4 NGKAALVTGGSKGIGFAVAEALAAAGY-RVAICARDESELEAAAQELGK--RNVLGLACDVRDEADVRQAVDAHVEAFGG 80 (235)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 998999938267999999999998799-999998988999999998423--98699996389999999999999998299
Q ss_pred CEEEEECCCHHHHHHH
Q ss_conf 2011202322467889
Q gi|254780398|r 118 PIRIIANLPYNIGTRL 133 (284)
Q Consensus 118 ~~~vvgNLPYnIss~I 133 (284)
--.+|-|--.....++
T Consensus 81 iDiLVNNAGi~~~~~~ 96 (235)
T PRK07326 81 LDILVNNAGVGHFAPV 96 (235)
T ss_pred CEEEEECCCCCCCCCH
T ss_conf 6699988877899882
No 417
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.76 E-value=55 Score=14.03 Aligned_cols=113 Identities=10% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEE-CCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH-HHHC----C-C
Q ss_conf 99987999758988---23467750235259984-255430368878753220012200000001431-5521----3-3
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVI-EKDQQFFPILKDISSQHPNRLEIIQDDALKVDF-EKFF----N-I 115 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~ai-EiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~-~~~~----~-~ 115 (284)
.+++.++=-|.+.| ++.+.+++.+++ |+.. -.++...+.+.+.......+...+++|+.+-+- ..+. . .
T Consensus 2 L~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAKEGYD-IAINYARSRKAAEETANEIEQLGRKALVVKANVGDVEKIKEMFSQIDEHF 80 (250)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 89498999587669999999999988998-99975999899999999999549958999847999999999999999980
Q ss_pred CCCEEEEECCCHHHHHHHHH-------HHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 22201120232246788999-------998520100000011020334478875301
Q gi|254780398|r 116 SSPIRIIANLPYNIGTRLLF-------NWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 116 ~~~~~vvgNLPYnIss~Il~-------~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
+.--.+|.|--..+..++.. +.+.-+ + ...+.+.+++..+|...
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vN-----l-~~~~~~~~~~~~~m~~~ 131 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNIN-----A-KALLFCAQEAAKLMEKN 131 (250)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHC
T ss_conf 998899987856788992669999999999874-----0-37999999999999863
No 418
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.54 E-value=56 Score=14.00 Aligned_cols=12 Identities=50% Similarity=1.043 Sum_probs=4.6
Q ss_pred EEEECCCCCHHH
Q ss_conf 999758988234
Q gi|254780398|r 51 VIEIGAGPGNLT 62 (284)
Q Consensus 51 VlEIGpG~G~LT 62 (284)
|+=||.|+|.++
T Consensus 7 viVIG~GpaG~~ 18 (467)
T PRK07818 7 VVVLGAGPGGYV 18 (467)
T ss_pred EEEECCCHHHHH
T ss_conf 899997889999
No 419
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.44 E-value=56 Score=13.99 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=64.5
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHH-HHC----C-C
Q ss_conf 899987999758988---234677502352599842554303688787532200122000000014315-521----3-3
Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFE-KFF----N-I 115 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~-~~~----~-~ 115 (284)
..+++.+|=-|.+.| ++.+.|++.++ +|+...+++.-.+...+......+++..+.+|..+.+-- .+. . .
T Consensus 4 ~l~gKvalVTGgs~GIG~a~A~~la~~Ga-~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~ 82 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 88999899958577899999999998799-99999798899999999999629939999815899999999999999981
Q ss_pred CCCEEEEECCCHHHHHHHHH-------HHHHHHCCCCCCCHHHHEEEHHHHHHHH
Q ss_conf 22201120232246788999-------9985201000000110203344788753
Q gi|254780398|r 116 SSPIRIIANLPYNIGTRLLF-------NWISADTWPPFWESLTLLFQKEVGERIT 163 (284)
Q Consensus 116 ~~~~~vvgNLPYnIss~Il~-------~ll~~~~~~~~~~~~vlmvQkEvA~Rl~ 163 (284)
+.--.+|-|--.+..+++.. +.+.-+ + ..++.+-++++..|.
T Consensus 83 G~iDiLVnnAG~~~~~~~~~~~~e~w~~~~~vN-----l-~g~~~~~~~~~p~M~ 131 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIH-----V-DGAFLTTKAALKHMY 131 (262)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHH-----H-HHHHHHHHHHHHHHH
T ss_conf 999999989988999991659999999999997-----5-899999999999999
No 420
>PRK06116 glutathione reductase; Validated
Probab=23.29 E-value=56 Score=13.97 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=14.0
Q ss_pred CEEEEECCCCCHHHH--HHHHCCCCEEEEECCCCC
Q ss_conf 879997589882346--775023525998425543
Q gi|254780398|r 49 ITVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQ 81 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~ 81 (284)
+.++=||.|.-++-. .+.+.+ .+|+.+|..++
T Consensus 168 ~~v~IiGgG~ig~E~A~~~~~lG-~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLHGLG-SETHLFVRGDA 201 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHHC-CEEEEEEECCC
T ss_conf 77999999666999999999609-84899994484
No 421
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase; InterPro: IPR005933 The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline. 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch include the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase. ; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=23.09 E-value=28 Score=15.88 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHH-CCCHHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCC
Q ss_conf 23224678899999852010000001102033447887530-12312332345432013320120001100001057875
Q gi|254780398|r 124 NLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITA-QKNSPHYGRLSVLTGWRTKATMMFDISPHVFFPSPKVT 202 (284)
Q Consensus 124 NLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a-~pg~k~Yg~LSv~~q~~~~v~~~~~V~~~~F~P~PkVd 202 (284)
=||=++-.++|..-..+.......- =||.||.|||+|++. =.|-=+=.+.|.=.+..+||
T Consensus 307 AL~EQVv~DVL~SAFdSAGQRCSAL-RvLcvQedvADr~ltmi~GAM~El~vg~P~~l~TDv------------------ 367 (525)
T TIGR01238 307 ALAEQVVADVLRSAFDSAGQRCSAL-RVLCVQEDVADRVLTMIKGAMDELKVGKPIRLTTDV------------------ 367 (525)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC------------------
T ss_conf 3504899999976651314246788-898777778778999987345552038886303676------------------
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHH--CCCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHCCCHHHHHHHHH
Q ss_conf 7887301258855347678999999997--27313899987631817899978777465712089999999999
Q gi|254780398|r 203 STVIHFIPHLNPIPCCLESLKKITQEAF--GKRRKTLRQSLKRLGGENLLHQAGIETNLRAENLSIEDFCRITN 274 (284)
Q Consensus 203 S~vi~l~pk~~~~~~~~~~~~~~~~~~F--~~RRK~l~~~L~~~~~~~~l~~~~i~~~~R~e~Ls~~~~~~L~~ 274 (284)
-+..|.+.=+++.+|+= .+..|++...-.. .+++. ....-..-.||--+.++++-+|.+
T Consensus 368 -----------GPVIDaeAkq~ll~HI~~M~~~~k~~~q~~~~-~~eda-~~~~hgtFV~P~lfEld~~~eL~~ 428 (525)
T TIGR01238 368 -----------GPVIDAEAKQNLLAHIEKMKAKAKKVAQVKLD-DDEDA-VESRHGTFVAPTLFELDDLDELKK 428 (525)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHH-HHHCCCCCCCCHHHHCCCHHHHHH
T ss_conf -----------77306788999999999988733003445442-00345-762058846617751046577612
No 422
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=22.87 E-value=57 Score=13.92 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=32.1
Q ss_pred HHCCCCCCCEEEEECCCCCHHH-HHHHH-CCCCEEEEECCCCCCHHHHHHH
Q ss_conf 9719899987999758988234-67750-2352599842554303688787
Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLT-QMLLT-LGARKVIVIEKDQQFFPILKDI 89 (284)
Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT-~~Ll~-~~~~~v~aiEiD~~~~~~l~~~ 89 (284)
..+++.++++|+=+|+|.-.+. -.+++ .++ +|++++.++.=.+.+++.
T Consensus 160 ~~~~v~~g~~V~V~G~G~iGl~a~~~ak~~Ga-~Vi~vd~~~~rle~a~~~ 209 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred HHCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC
T ss_conf 31178999889998974899999999998599-799994999999999964
No 423
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.53 E-value=42 Score=14.79 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHH------------------CCCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHH
Q ss_conf 4112398999999997------------------19899987999758988234677502--352599842554303688
Q gi|254780398|r 27 QNFLLDLNILKKIAES------------------SGSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPIL 86 (284)
Q Consensus 27 QnFL~d~~i~~~iv~~------------------~~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l 86 (284)
-|-..|..+...|+.. ........+|++|.|+|.---++-.. ..+.++.+|-.+.+-++.
T Consensus 75 lh~~tdm~V~Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~ 154 (484)
T COG5459 75 LHCRTDMAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVG 154 (484)
T ss_pred CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHH
T ss_conf 03220388999999861578999999999999748886861020037787521233203378802212340489999999
No 424
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=22.49 E-value=58 Score=13.87 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=40.6
Q ss_pred CCCEEEEECCCCC---HHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 9987999758988---2346775023525998425-543036887875322001220000000143
Q gi|254780398|r 47 DGITVIEIGAGPG---NLTQMLLTLGARKVIVIEK-DQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 47 ~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEi-D~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
+++.+|=-|.+.| ++.+.+++.++ +|+...+ +....+.+.+.......++..+.+|+.+.+
T Consensus 4 ~gK~~lITGgs~GIG~aia~~la~~G~-~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlt~~~ 68 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVLNYASSEAGAEALVAEIGALGGKALAVQGDVADAE 68 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 998899948976899999999998799-89999698565899999999963995899990389999
No 425
>PRK08589 short chain dehydrogenase; Validated
Probab=22.42 E-value=59 Score=13.86 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=42.4
Q ss_pred CCCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 899987999758988---2346775023525998425543036887875322001220000000143
Q gi|254780398|r 45 SLDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVD 108 (284)
Q Consensus 45 ~~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d 108 (284)
..+++.+|=-|.+.| ++.+.+++.++ +|++..+++...+.+++... ..++...+.+|+.+.+
T Consensus 3 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~d~~~~~~~~~~~i~~-~g~~~~~~~~Dvsd~~ 67 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKS-NGGKAKAYHVDISDEQ 67 (272)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHH-CCCCEEEEEECCCCHH
T ss_conf 99979899978256999999999998699-99998382789999999995-5994899996079999
No 426
>KOG1928 consensus
Probab=22.37 E-value=37 Score=15.10 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=13.6
Q ss_pred EECCCCCHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 97589882346775023525998425543
Q gi|254780398|r 53 EIGAGPGNLTQMLLTLGARKVIVIEKDQQ 81 (284)
Q Consensus 53 EIGpG~G~LT~~Ll~~~~~~v~aiEiD~~ 81 (284)
..++|.-.+ .+++.++. .+.++-.|-.
T Consensus 170 ds~~~~s~~-kp~~~~~l-sv~~v~~~lp 196 (409)
T KOG1928 170 DSPNGYSIL-KPFLDSGL-SVIAVTPDLP 196 (409)
T ss_pred CCCCCCCCC-CCHHHHHH-HHCCCCCCCH
T ss_conf 588874445-63767334-3302454726
No 427
>KOG1596 consensus
Probab=21.78 E-value=60 Score=13.78 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=43.4
Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 9719899987999758988234677502-352-5998425543036887875322001220000000
Q gi|254780398|r 41 ESSGSLDGITVIEIGAGPGNLTQMLLTL-GAR-KVIVIEKDQQFFPILKDISSQHPNRLEIIQDDAL 105 (284)
Q Consensus 41 ~~~~~~~~~~VlEIGpG~G~LT~~Ll~~-~~~-~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal 105 (284)
+.+.+.++..||=.|++.|.--...... ++. -|.|||.-++.-..|-....+-+| +--|-.||-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtN-iiPIiEDAr 215 (317)
T KOG1596 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTN-IIPIIEDAR 215 (317)
T ss_pred CCEEECCCCEEEEEECCCCCEEEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC-CEEEEECCC
T ss_conf 012535886699963367843330000307774399998435532889987642687-002450477
No 428
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.61 E-value=61 Score=13.76 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCC
Q ss_conf 9987999758988234--67750235259984255430
Q gi|254780398|r 47 DGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~ 82 (284)
.++.|==||.|+..|| ..|++.+. .|+.+|..+..
T Consensus 326 tGKkVAIIGsGPAGLsaA~~Lar~G~-~VTVFE~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLTRNGV-AVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 89989998977899999999997697-57995257778
No 429
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.52 E-value=61 Score=13.75 Aligned_cols=35 Identities=31% Similarity=0.520 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCHHH--HHHHHCCCCEEEEECCCCCC
Q ss_conf 9987999758988234--67750235259984255430
Q gi|254780398|r 47 DGITVIEIGAGPGNLT--QMLLTLGARKVIVIEKDQQF 82 (284)
Q Consensus 47 ~~~~VlEIGpG~G~LT--~~Ll~~~~~~v~aiEiD~~~ 82 (284)
.+..|-=||.|+..|| ..|++.|. .|+.+|..++.
T Consensus 309 ~gkKVAVIGsGPAGLaaA~~Lar~G~-~VTVfE~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf 89989998975899999999997599-06999368888
No 430
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=21.49 E-value=61 Score=13.74 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEECCCCCCHHHHHH
Q ss_conf 9998799975898-823467750-235259984255430368878
Q gi|254780398|r 46 LDGITVIEIGAGP-GNLTQMLLT-LGARKVIVIEKDQQFFPILKD 88 (284)
Q Consensus 46 ~~~~~VlEIGpG~-G~LT~~Ll~-~~~~~v~aiEiD~~~~~~l~~ 88 (284)
..+++|+=+|+|. |.+.-.+++ .++++|++++.++.=.+.+++
T Consensus 162 ~~g~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~ 206 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206 (341)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHH
T ss_conf 788869998997543299999998499289999489999998986
No 431
>PRK13748 putative mercuric reductase; Provisional
Probab=21.32 E-value=62 Score=13.72 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=24.3
Q ss_pred CEEEEECCCCCHHHHHHH--HCCCCEEEEECCCC
Q ss_conf 879997589882346775--02352599842554
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLL--TLGARKVIVIEKDQ 80 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll--~~~~~~v~aiEiD~ 80 (284)
-.|+=||.|+|..+-++- +.+. +|..||.+.
T Consensus 99 yDliVIG~GpaG~~AA~~Aa~~G~-kValVE~~~ 131 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGA-RVTLIERGT 131 (561)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 768998958899999999997899-799994799
No 432
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=21.30 E-value=62 Score=13.72 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH
Q ss_conf 99999997198999879997589882346775-0235259984255430368878753220012200000001431
Q gi|254780398|r 35 ILKKIAESSGSLDGITVIEIGAGPGNLTQMLL-TLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDF 109 (284)
Q Consensus 35 i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll-~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~ 109 (284)
+++.+++.. +...|+|||-|.=.=.-..+ +.++ .|+++++++.-++ ..+..+.+|..+=++
T Consensus 4 ~a~~ia~~~---~~gkiVEVGIG~~~~vA~~L~~~g~-dv~~tDi~~~av~----------~gl~~v~DDif~P~~ 65 (127)
T pfam03686 4 VAEYIAREN---ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEKAVP----------EGLRFVVDDITNPNI 65 (127)
T ss_pred HHHHHHHHC---CCCCEEEEECCCCHHHHHHHHHCCC-CEEEEECCCCCCC----------CCCCEEECCCCCCCH
T ss_conf 999987418---7885899913688899999998599-6899977765766----------788878725889898
No 433
>PRK09291 short chain dehydrogenase; Provisional
Probab=21.26 E-value=62 Score=13.72 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=55.3
Q ss_pred CCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCC-CHHHHCCCCCCEEEEE
Q ss_conf 987999758988---234677502352599842554303688787532200122000000014-3155213322201120
Q gi|254780398|r 48 GITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKV-DFEKFFNISSPIRIIA 123 (284)
Q Consensus 48 ~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~-d~~~~~~~~~~~~vvg 123 (284)
+++||=-|++.| ++...+++.|+ +|++.-.+..-...+++........+.++..|..+. +...... ...-.+|-
T Consensus 2 gK~vLITGAssGIGraiA~~la~~G~-~Vi~~~r~~~~l~~l~~~~~~~g~~~~~~~lDv~~~~~~~~~~~-~~iDvLVN 79 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-RVIAGVQIAPQVTELRAEAARRGLALRVEKLDLTDAIDRARAAE-WDVDVLLN 79 (257)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCC-CCCCEEEE
T ss_conf 99899968985899999999998799-89999687899999999998529955999898899999999808-99999998
Q ss_pred CCCHHHHHHH-------HHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHC
Q ss_conf 2322467889-------99998520100000011020334478875301
Q gi|254780398|r 124 NLPYNIGTRL-------LFNWISADTWPPFWESLTLLFQKEVGERITAQ 165 (284)
Q Consensus 124 NLPYnIss~I-------l~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~ 165 (284)
|-=+....++ +.+.++-+. ...+.+-+.|...|..+
T Consensus 80 NAGi~~~g~i~e~~~~~~~~~~~vNv------~g~~~ltq~~lp~M~~~ 122 (257)
T PRK09291 80 NAGIGEAGALVDIPVELVRELFETNV------FGPLELTQGVVRKMVAR 122 (257)
T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
T ss_conf 98568997734499999999999997------99999999978999876
No 434
>TIGR00497 hsdM type I restriction-modification system, M subunit; InterPro: IPR004546 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the M subunit (HsdM) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC. The M subunit (HsdM) functions in methylation of specific adenine residues, which is required for both restriction and modification activities , , . Methylation of specific residues prevents the host from digesting its own genome via its restriction enzymes. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=21.11 E-value=62 Score=13.70 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=71.1
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHCCC------CEEEEECCCCCCH
Q ss_conf 999981898433658411239899999999719--89998799975898823467750235------2599842554303
Q gi|254780398|r 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSG--SLDGITVIEIGAGPGNLTQMLLTLGA------RKVIVIEKDQQFF 83 (284)
Q Consensus 12 ~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~--~~~~~~VlEIGpG~G~LT~~Ll~~~~------~~v~aiEiD~~~~ 83 (284)
.++..|.-.+.|+ |-.|..-..+.+-+++..- ...-+.+.+..+|.|.+.....+.-. .....-|++...+
T Consensus 187 ~~~~~~~~~~g~~-gg~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~cg~g~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 265 (516)
T TIGR00497 187 FLLALYASNAGKS-GGEFFTPQDVSELLAKIALGGKDTVDDVYDPCCGSGSLLLQFSKVLGKDKNSLKGYFGQEINLTTY 265 (516)
T ss_pred HHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHCCHHH
T ss_conf 9999875204656-665446255898988764045200234443104751367787877323101122220210011034
Q ss_pred HHHHHHHHHH---HCCCCCCHHHHCCCCHHH-H----CCCCCCEEEEECCCHHHHH
Q ss_conf 6887875322---001220000000143155-2----1332220112023224678
Q gi|254780398|r 84 PILKDISSQH---PNRLEIIQDDALKVDFEK-F----FNISSPIRIIANLPYNIGT 131 (284)
Q Consensus 84 ~~l~~~~~~~---~~~~~ii~~Dal~~d~~~-~----~~~~~~~~vvgNLPYnIss 131 (284)
...+-..--+ -.+++++++|.+.-.-.+ . .+.+.--.+++|.||.++.
T Consensus 266 ~~c~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~c~~~~~~~~~~~~pp~~~~w 321 (516)
T TIGR00497 266 NLCRLNLFLHDIDYANFNIANGDTLLDPEWEKHYVNCSDDEGFDAVVSNPPYSTKW 321 (516)
T ss_pred HHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEEE
T ss_conf 45555455531230010000231003620121001246777732455378742000
No 435
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.81 E-value=63 Score=13.66 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=41.6
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-HHH-HCCCCCCHHHHCCCC
Q ss_conf 99987999758988---2346775023525998425543036887875-322-001220000000143
Q gi|254780398|r 46 LDGITVIEIGAGPG---NLTQMLLTLGARKVIVIEKDQQFFPILKDIS-SQH-PNRLEIIQDDALKVD 108 (284)
Q Consensus 46 ~~~~~VlEIGpG~G---~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~-~~~-~~~~~ii~~Dal~~d 108 (284)
.+++.+|=.|.+.| ++++.+++.++ +|+...+|..-...+.+.. ..+ ..++..+.+|..+.+
T Consensus 6 L~gK~alITG~s~GIG~a~a~~la~~Ga-~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~ 72 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEA 72 (265)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
T ss_conf 8999899957577999999999998799-999997988999999999987369965999975799999
No 436
>PRK11096 ansB L-asparaginase II; Provisional
Probab=20.51 E-value=64 Score=13.62 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHHCCCCCCHH-HHCCCC---HHHHCCCCCCEEEEEC-CCH-HHHHHHHHHHH
Q ss_conf 75322001220000-000143---1552133222011202-322-46788999998
Q gi|254780398|r 89 ISSQHPNRLEIIQD-DALKVD---FEKFFNISSPIRIIAN-LPY-NIGTRLLFNWI 138 (284)
Q Consensus 89 ~~~~~~~~~~ii~~-Dal~~d---~~~~~~~~~~~~vvgN-LPY-nIss~Il~~ll 138 (284)
.....++ +-|.|| |-|..- +.-..+.+.|..+.|- .|- .++|+=-.+|+
T Consensus 97 ~~~~~DG-~VVtHGTDTmeeTA~~Lsl~~~~~kPVVlTGAqrp~~~~ssDg~~NL~ 151 (347)
T PRK11096 97 DCDKTDG-FVITHGTDTMEETAYFLDLTVKCDKPVVLVGAMRPSTAMSADGPLNLY 151 (347)
T ss_pred HCCCCCE-EEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf 6579988-999248737999999999871479988996788788887860799999
No 437
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor; InterPro: IPR006529 These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs. The well-characterised members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (IPR006509 from INTERPRO). Members of this subfamily are found in plants, metazoa and fungi. ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=20.45 E-value=49 Score=14.37 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=11.2
Q ss_pred EEECCCHHHHHHHHHHHHH
Q ss_conf 1202322467889999985
Q gi|254780398|r 121 IIANLPYNIGTRLLFNWIS 139 (284)
Q Consensus 121 vvgNLPYnIss~Il~~ll~ 139 (284)
.|||||||.+-.=+.-||+
T Consensus 339 yi~nLP~~L~d~Qv~eLL~ 357 (577)
T TIGR01642 339 YIGNLPLYLKDDQVKELLE 357 (577)
T ss_pred EECCCCCCCCHHHHHHHHH
T ss_conf 6627876555178898540
No 438
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.45 E-value=64 Score=13.61 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=45.0
Q ss_pred CEEEEECCCCCH--HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCC
Q ss_conf 879997589882--346775023525998425543036887875322001220000000143155213322201120232
Q gi|254780398|r 49 ITVIEIGAGPGN--LTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLP 126 (284)
Q Consensus 49 ~~VlEIGpG~G~--LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLP 126 (284)
++|+=+|-|.-. +.+.|-+.+ .+++++|.|++.++.+++. + ..++.||+.+-+.-+....+.--.+|.-+|
T Consensus 418 ~hvii~G~Gr~G~~va~~L~~~~-~~~vvid~d~~~v~~~~~~-----g-~~v~~GDa~~~~~L~~agi~~A~~vvit~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLASG-IPLVVIETSRTRVDELRER-----G-IRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC-----C-CEEEEECCCCHHHHHHCCCCCCCEEEEEEC
T ss_conf 99899898866999999999879-9889998989999999968-----9-979997899889998579132499999819
Q ss_pred HHHHH
Q ss_conf 24678
Q gi|254780398|r 127 YNIGT 131 (284)
Q Consensus 127 YnIss 131 (284)
=.-..
T Consensus 491 d~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred CHHHH
T ss_conf 88999
No 439
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=20.27 E-value=65 Score=13.59 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=16.3
Q ss_pred EEEEECCCCCHHHH--HHHHCCCCEEEEECCCCCCH
Q ss_conf 79997589882346--77502352599842554303
Q gi|254780398|r 50 TVIEIGAGPGNLTQ--MLLTLGARKVIVIEKDQQFF 83 (284)
Q Consensus 50 ~VlEIGpG~G~LT~--~Ll~~~~~~v~aiEiD~~~~ 83 (284)
.++=||.|.=++-. .+.+.+. +|+.+|..+++.
T Consensus 170 ~~~IIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~ll 204 (453)
T PRK07846 170 SLVIVGGGFIAAEFAHVFSALGV-RVTVVNRSDRLL 204 (453)
T ss_pred EEEEECCCHHHHHHHHHHHHHCC-EEEEEEECCCCC
T ss_conf 49998997579999999995299-268997465324
No 440
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=20.17 E-value=65 Score=13.57 Aligned_cols=31 Identities=35% Similarity=0.655 Sum_probs=16.0
Q ss_pred EEEEECCCCCHHHHHHHH--CCCCEEEEECCCCC
Q ss_conf 799975898823467750--23525998425543
Q gi|254780398|r 50 TVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQ 81 (284)
Q Consensus 50 ~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD~~ 81 (284)
.|+=||.|...|+-++.. .++ +|+.+|+.+.
T Consensus 7 DVvVVG~G~AGl~AAi~Aae~Ga-~VillEK~~~ 39 (567)
T PRK12842 7 DVLVIGSGAAGLSAAITARKLGL-DVVVLEKEPV 39 (567)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf 96998968899999999998799-0899977998
No 441
>PRK12839 hypothetical protein; Provisional
Probab=20.04 E-value=66 Score=13.56 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=17.2
Q ss_pred CEEEEECCCCCHHHHHHHH--CCCCEEEEECCCCC
Q ss_conf 8799975898823467750--23525998425543
Q gi|254780398|r 49 ITVIEIGAGPGNLTQMLLT--LGARKVIVIEKDQQ 81 (284)
Q Consensus 49 ~~VlEIGpG~G~LT~~Ll~--~~~~~v~aiEiD~~ 81 (284)
-.|+=||.|.+.||-++.. .++ +|+.||+...
T Consensus 10 ~DVvVVGsG~AGl~AAi~Aa~~Ga-~VivlEK~~~ 43 (574)
T PRK12839 10 YDVIVVGSGAGGLSAAVSAAYGGK-KVAVVEKASV 43 (574)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf 578998968999999999998899-2899968999
Done!