HHsearch alignment for GI: 254780398 and conserved domain: pfam01861
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=95.99 E-value=0.1 Score=31.03 Aligned_cols=110 Identities=15% Similarity=0.297 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89843365841123989999999971--9899987999758988234677502--3525998425543036887875322
Q gi|254780398|r 18 KIIPKKYMGQNFLLDLNILKKIAESS--GSLDGITVIEIGAGPGNLTQMLLTL--GARKVIVIEKDQQFFPILKDISSQH 93 (284)
Q Consensus 18 ~~~p~k~lGQnFL~d~~i~~~iv~~~--~~~~~~~VlEIGpG~G~LT~~Ll~~--~~~~v~aiEiD~~~~~~l~~~~~~~ 93 (284)
T Consensus 13 RP~~~~~~DQ~~~T~ET~v~Ra~l~~~rgdL~Gk~iL~vG--DDDLtSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~ 90 (243)
T pfam01861 13 RPEPIHEYDQGFVTPETTVARVALMYSRGDLEGKEILVLG--DDDLTSLAAALTGLPKRIAVVDIDERLIKFIERVAKEE 90 (243)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 9987310455631628899999999873885798799972--86187899996489854899967589999999999974
Q ss_pred HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 00122000000014315521332220112023224678
Q gi|254780398|r 94 PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT 131 (284)
Q Consensus 94 ~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss 131 (284)
T Consensus 91 gl~i~~~~~Dl-R~pLP~~l~~-~FD~f~TDPPyT~~G 126 (243)
T pfam01861 91 GLKIEAFVHDL-RNPLPEDLKH-KFDVFITDPPETVDG 126 (243)
T ss_pred CCCEEEEEECC-CCCCCHHHHC-CCCEEECCCCCCHHH
T ss_conf 99716887410-1489999961-679897189987789