HHsearch alignment for GI: 254780398 and conserved domain: pfam02384
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.25 E-value=1.7e-05 Score=54.44 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=116.9
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC--------CCCEEEEECCCCCCH
Q ss_conf 999981898433658411239899999999719899987999758988234677502--------352599842554303
Q gi|254780398|r 12 TILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL--------GARKVIVIEKDQQFF 83 (284)
Q Consensus 12 ~ll~~~~~~p~k~lGQnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~--------~~~~v~aiEiD~~~~ 83 (284)
T Consensus 12 ~ll~~~a~~~g~~~Geff-TPr~Vv~lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~ 90 (312)
T pfam02384 12 YLLGKFANEEGKSGGEFY-TPREVSKLIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTY 90 (312)
T ss_pred HHHHHHHHHHCCCCCEEC-CCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHH
T ss_conf 999999987387586358-8789999999982899999882168773378999999999843785565563688998999
Q ss_pred HHHHHHHHHH---HCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHHHH-------------------------HHHH
Q ss_conf 6887875322---00122000000014315521332220112023224678-------------------------8999
Q gi|254780398|r 84 PILKDISSQH---PNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNIGT-------------------------RLLF 135 (284)
Q Consensus 84 ~~l~~~~~~~---~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnIss-------------------------~Il~ 135 (284)
T Consensus 91 ~la~mNm~lhgi~~~~~~i~~gdsl~~~~~~~--~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiq 168 (312)
T pfam02384 91 RLARMNMILHGIEYNDFGIRHGDTLLSPKFEE--DKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQ 168 (312)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHH
T ss_conf 99999999847988745521477655767665--4551189837864667665432102721103687888744299999
Q ss_pred HHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHH-HHHHHHCCCCCEEEECCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 9985201000000110203344788753012312332-345432013320120001100001057875788730125
Q gi|254780398|r 136 NWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYG-RLSVLTGWRTKATMMFDISPHVFFPSPKVTSTVIHFIPH 211 (284)
Q Consensus 136 ~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg-~LSv~~q~~~~v~~~~~V~~~~F~P~PkVdS~vi~l~pk 211 (284)
T Consensus 169 h~l~~L-k-~~GraaiVlp~-g~----Lf~~~-~e~~iR~~ll--e~~~l~aVI~LP~~lF~~-tgi~t~ilv~~k~ 234 (312)
T pfam02384 169 HIIYHL-S-PNGRAAVVLPN-GV----LFRGG-AEGDIRKALV--EKDLIEAVIALPPNLFYN-TGIPTCILFLTKN 234 (312)
T ss_pred HHHHHC-C-CCCEEEEEECC-CC----CCCCC-HHHHHHHHHH--HCCCEEEEEECCCCCCCC-CCCCEEEEEEECC
T ss_conf 999856-9-99769999558-23----10465-0889999999--759769999589775338-9984799999889