HHsearch alignment for GI: 254780398 and conserved domain: pfam04445

>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.

Probab=94.25  E-value=0.11  Score=30.91  Aligned_cols=69  Identities=26%  Similarity=0.400  Sum_probs=54.3

Q ss_pred             HHHHHCCCCCCC--EEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH----------HHCCCCCCHHHHC
Q ss_conf             999971989998--7999758988234677502352599842554303688787532----------2001220000000
Q gi|254780398|r   38 KIAESSGSLDGI--TVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQ----------HPNRLEIIQDDAL  105 (284)
Q Consensus        38 ~iv~~~~~~~~~--~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~----------~~~~~~ii~~Dal  105 (284)
T Consensus        64 ~l~KAvG~k~~~~p~VlDATAGLG~DafiLAsLG~-~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~  142 (235)
T pfam04445        64 AIAKAVGIKGGYLPTVLDATAGLGRDAFVLASLGC-RVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSA  142 (235)
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHH
T ss_conf             89998667889998389878775788999981899-69999788999999999999987481557999962899838879


Q ss_pred             CC
Q ss_conf             14
Q gi|254780398|r  106 KV  107 (284)
Q Consensus       106 ~~  107 (284)
T Consensus       143 ~~  144 (235)
T pfam04445       143 DQ  144 (235)
T ss_pred             HH
T ss_conf             99