HHsearch alignment for GI: 254780398 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.99 E-value=1.5e-09 Score=79.65 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf 39899999999719899987999758988234677502352-59984255430368878753220-01220000000143
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD 108 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d 108 (284)
T Consensus 16 lD~Gt-~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~ 94 (170)
T pfam05175 16 LDIGS-RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAV 94 (170)
T ss_pred CCHHH-HHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 79899-99997089778994999776482989999997898679851544999999999999809984899974466657
Q ss_pred HHHHCCCCCCEEEEECCCHHHHHH----HHHHHHHH---HCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 155213322201120232246788----99999852---01000000110203344788753012312332345432013
Q gi|254780398|r 109 FEKFFNISSPIRIIANLPYNIGTR----LLFNWISA---DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR 181 (284)
Q Consensus 109 ~~~~~~~~~~~~vvgNLPYnIss~----Il~~ll~~---~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~ 181 (284)
T Consensus 95 ~~~-----~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG--~l~~V~n~~l-----------~y--~~~l~~~f 154 (170)
T pfam05175 95 EPG-----KFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGG--ELWIVANRHL-----------GY--PSLLEELF 154 (170)
T ss_pred CCC-----CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--EEEEEEECCC-----------CC--HHHHHHHH
T ss_conf 788-----6608998977211420328999999999999616497--9999998999-----------94--79999860
Q ss_pred CCEEEECC
Q ss_conf 32012000
Q gi|254780398|r 182 TKATMMFD 189 (284)
Q Consensus 182 ~~v~~~~~ 189 (284)
T Consensus 155 ~~v~~~~~ 162 (170)
T pfam05175 155 GNVEVLAK 162 (170)
T ss_pred CCEEEEEE
T ss_conf 88899973