HHsearch alignment for GI: 254780398 and conserved domain: pfam05175

>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.99  E-value=1.5e-09  Score=79.65  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHHHH-CCCCCCHHHHCCCC
Q ss_conf             39899999999719899987999758988234677502352-59984255430368878753220-01220000000143
Q gi|254780398|r   31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGAR-KVIVIEKDQQFFPILKDISSQHP-NRLEIIQDDALKVD  108 (284)
Q Consensus        31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~-~v~aiEiD~~~~~~l~~~~~~~~-~~~~ii~~Dal~~d  108 (284)
T Consensus        16 lD~Gt-~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~   94 (170)
T pfam05175        16 LDIGS-RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAV   94 (170)
T ss_pred             CCHHH-HHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             79899-99997089778994999776482989999997898679851544999999999999809984899974466657


Q ss_pred             HHHHCCCCCCEEEEECCCHHHHHH----HHHHHHHH---HCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             155213322201120232246788----99999852---01000000110203344788753012312332345432013
Q gi|254780398|r  109 FEKFFNISSPIRIIANLPYNIGTR----LLFNWISA---DTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWR  181 (284)
Q Consensus       109 ~~~~~~~~~~~~vvgNLPYnIss~----Il~~ll~~---~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~  181 (284)
T Consensus        95 ~~~-----~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG--~l~~V~n~~l-----------~y--~~~l~~~f  154 (170)
T pfam05175        95 EPG-----KFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGG--ELWIVANRHL-----------GY--PSLLEELF  154 (170)
T ss_pred             CCC-----CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--EEEEEEECCC-----------CC--HHHHHHHH
T ss_conf             788-----6608998977211420328999999999999616497--9999998999-----------94--79999860


Q ss_pred             CCEEEECC
Q ss_conf             32012000
Q gi|254780398|r  182 TKATMMFD  189 (284)
Q Consensus       182 ~~v~~~~~  189 (284)
T Consensus       155 ~~v~~~~~  162 (170)
T pfam05175       155 GNVEVLAK  162 (170)
T ss_pred             CCEEEEEE
T ss_conf             88899973