HHsearch alignment for GI: 254780398 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.80 E-value=8.9e-06 Score=56.23 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=69.8
Q ss_pred HHH-HCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCC
Q ss_conf 999-7198999879997589882346775023525998425543036887875322001220000000143155213322
Q gi|254780398|r 39 IAE-SSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNISS 117 (284)
Q Consensus 39 iv~-~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~ 117 (284)
T Consensus 34 ~l~aaLp~~ry~~alE~GCa~G~lT~~LA~R-CdrLla~Dvs~~Av~~Ar~Rla~~~h-V~v~~~~vp~~wP~~~----F 107 (201)
T pfam05401 34 MLRLSLAQGTIANALEVGCAAGAFTERLAPY-CQRLTVIDVMPEAIARARLRMKKWSH-ISWIVSDVQQFSTNEL----F 107 (201)
T ss_pred HHHHHCCCHHHHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCC----E
T ss_conf 9998678343300204356624878999998-74673213629999999998557998-2898256666599888----6
Q ss_pred CEEEEECCCHHHHH
Q ss_conf 20112023224678
Q gi|254780398|r 118 PIRIIANLPYNIGT 131 (284)
Q Consensus 118 ~~~vvgNLPYnIss 131 (284)
T Consensus 108 DLIV~SEVlYYL~d 121 (201)
T pfam05401 108 DLIVVAEVLYYLGD 121 (201)
T ss_pred EEEEEEHHHHHHCC
T ss_conf 27975147786187