HHsearch alignment for GI: 254780398 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.32 E-value=7e-07 Score=63.09 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-C-CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCHHHHCC
Q ss_conf 398999999997198999879997589882346775023-5-25998425543036887875322--0012200000001
Q gi|254780398|r 31 LDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLG-A-RKVIVIEKDQQFFPILKDISSQH--PNRLEIIQDDALK 106 (284)
Q Consensus 31 ~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~-~-~~v~aiEiD~~~~~~l~~~~~~~--~~~~~ii~~Dal~ 106 (284)
T Consensus 86 iYpkD~s~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~ 165 (309)
T pfam08704 86 LYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCK 165 (309)
T ss_pred ECCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHC
T ss_conf 55600999999809899999998367842999999997488865999844789999999999874987505889852001
Q ss_pred CCH
Q ss_conf 431
Q gi|254780398|r 107 VDF 109 (284)
Q Consensus 107 ~d~ 109 (284)
T Consensus 166 ~gf 168 (309)
T pfam08704 166 SGF 168 (309)
T ss_pred CCC
T ss_conf 366