HHsearch results for GI: 254780398 and protein with PDBid: 1ne2_A
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.23 E-value=2.8e-10 Score=82.84 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=83.8
Q ss_pred HHHHHHHCCC--CCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 9999998189--843365841123989999999971---98999879997589882346775023525998425543036
Q gi|254780398|r 10 LKTILSHYKI--IPKKYMGQNFLLDLNILKKIAESS---GSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFP 84 (284)
Q Consensus 10 i~~ll~~~~~--~p~k~lGQnFL~d~~i~~~iv~~~---~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~ 84 (284)
+.-.|++..- .|+-+|-|. .++..++.+++..+ +...|+.|||+|||+|.|+..++.+++++|+++|+|+..++
T Consensus 10 l~~~l~~~~~~~~~~~~leQY-~t~~~iaa~~~~~~~~~gd~~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~ 88 (200)
T 1ne2_A 10 LEIRLQKLQQQGNFKNYLEQY-PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIE 88 (200)
T ss_dssp HHHHHHTSCCCC--------C-CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 999984689999998771007-9988999999999986699893989987575109999999679987967508999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCCCEEEEECCCHHH
Q ss_conf 887875322001220000000143155213322201120232246
Q gi|254780398|r 85 ILKDISSQHPNRLEIIQDDALKVDFEKFFNISSPIRIIANLPYNI 129 (284)
Q Consensus 85 ~l~~~~~~~~~~~~ii~~Dal~~d~~~~~~~~~~~~vvgNLPYnI 129 (284)
.++++.. +++++++|+.+++- .--.||+|.||..
T Consensus 89 ~a~~N~~----~~~~~~~d~~~~~~-------~fD~Vi~NPPfg~ 122 (200)
T 1ne2_A 89 TAKRNCG----GVNFMVADVSEISG-------KYDTWIMNPPFGS 122 (200)
T ss_dssp HHHHHCT----TSEEEECCGGGCCC-------CEEEEEECCCC--
T ss_pred HHHHHHH----HCCCEEEEHHHCCC-------CCCEEEECCCCCH
T ss_conf 9999898----57853765210577-------5488987798631