HHsearch results for GI: 254780398 and protein with PDBid: 1qyr_A
>1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24
Probab=100.00 E-value=0 Score=516.07 Aligned_cols=248 Identities=35% Similarity=0.579 Sum_probs=231.3
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHCC
Q ss_conf 41123989999999971989998799975898823467750235259984255430368878753220012200000001
Q gi|254780398|r 27 QNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTLGARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALK 106 (284)
Q Consensus 27 QnFL~d~~i~~~iv~~~~~~~~~~VlEIGpG~G~LT~~Ll~~~~~~v~aiEiD~~~~~~l~~~~~~~~~~~~ii~~Dal~ 106 (284)
||||+|++++++||+.+++.++|.|||||||+|+||..|++++ ++|+|||+|+++++.|++.+...+ +++++++|+|+
T Consensus 1 QnFL~d~~i~~~iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~L~~~~~~~~-~~~ii~~D~l~ 78 (252)
T 1qyr_A 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMT 78 (252)
T ss_dssp CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGG-GEEEECSCGGG
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHCCC-CEEEEECHHHH
T ss_conf 9852788999999984489997969998998729999998168-976999962128899998763177-62565011455
Q ss_pred CCHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 43155213-32220112023224678899999852010000001102033447887530123123323454320133201
Q gi|254780398|r 107 VDFEKFFN-ISSPIRIIANLPYNIGTRLLFNWISADTWPPFWESLTLLFQKEVGERITAQKNSPHYGRLSVLTGWRTKAT 185 (284)
Q Consensus 107 ~d~~~~~~-~~~~~~vvgNLPYnIss~Il~~ll~~~~~~~~~~~~vlmvQkEvA~Rl~a~pg~k~Yg~LSv~~q~~~~v~ 185 (284)
+|+.++.. .+.|++|||||||||||+|+++++.... .++.|++|+|||||+||+|+||+++||+|||++|++|+++
T Consensus 79 ~~~~~~~~~~~~~~~vvgNLPY~Ist~il~~ll~~~~---~~~~~v~mvQkEvA~Ri~A~~gsk~yg~lsv~~q~~~~~~ 155 (252)
T 1qyr_A 79 FNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTD---AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVI 155 (252)
T ss_dssp CCHHHHHHHHTSCEEEEEECCTTTHHHHHHHHHTTGG---GEEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHHHEEEE
T ss_pred HCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC---CEEEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 2321221036897599946628899999997511366---3000247776899888834799835536777533111202
Q ss_pred EECCCCCCEECCCCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHC
Q ss_conf 200011000010578757887301258855--347678999999997273138999876318178999787774657120
Q gi|254780398|r 186 MMFDISPHVFFPSPKVTSTVIHFIPHLNPI--PCCLESLKKITQEAFGKRRKTLRQSLKRLGGENLLHQAGIETNLRAEN 263 (284)
Q Consensus 186 ~~~~V~~~~F~P~PkVdS~vi~l~pk~~~~--~~~~~~~~~~~~~~F~~RRK~l~~~L~~~~~~~~l~~~~i~~~~R~e~ 263 (284)
++++|||++|+|+|||||++|+++|++++. ..+.+.++.+++.+|++|||+|+|+|+.....++++++|++++.|||+
T Consensus 156 ~~~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rRK~l~n~L~~~~~~~~l~~~~i~~~~R~e~ 235 (252)
T 1qyr_A 156 PVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAEN 235 (252)
T ss_dssp EEEEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHHHTTTTCCHHHHHHTTCCTTSBGGG
T ss_pred EEEEECHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCHHH
T ss_conf 52388546546599840677998855878752068999999999998545288999874044199999779882339333
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8999999999998636
Q gi|254780398|r 264 LSIEDFCRITNILTDN 279 (284)
Q Consensus 264 Ls~~~~~~L~~~l~~~ 279 (284)
|+++||++|++.+.++
T Consensus 236 Ls~~~~~~L~~~l~~~ 251 (252)
T 1qyr_A 236 ISVAQYCQMANYLAEN 251 (252)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999999999840